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Additional file 4: Figure S2. The principal coordinate analysis (PCoA) of the (A) bacterial and (B) fungal communities in the rhizosphere of wild rice populations of the in situ natural reserves (ZTI, Zhangtang; AJSI, Anjiashan; STSI, Shuitaoshu) and ex situ (ZT, Zhangtang; AJS, Anjiashan; STS, Shuitaoshu).

Additional file 5: Figure S3. The wild rice sites. The three in situ natural reserve sites (A) AJSI, (B) STSI and (C) ZTI and three ex situ artificial protection nurseries (D) AJS, (E) STS and (F) ZT. (In Figure C, professor Dazhou Chen who is one of the initiators for Dongxiang wild rice conservation is observing the growth status of wild rice).

Additional file 1: Table S1. Statistics for the quality assessment of the sequencing data.

Additional file 3: Figure S1. The α-diversity of the (A, B) bacterial and (C, D) fungal communities in the rhizosphere of wild rice populations of the in situ natural reserves (ZTI, Zhangtang; AJSI, Anjiashan; STSI, Shuitaoshu) and ex situ (ZT, Zhangtang; AJS, Anjiashan; STS, Shuitaoshu).

Additional file 2: Table S2. Details of the sampling sites.

Microbial communities from rhizosphere (rhizomicrobiomes) have been significantly impacted by domestication as evidenced by a comparison of the rhizomicrobiomes of wild and related cultivated rice accessions. While there have been many published studies focusing on the structure of the rhizomicrobiome, studies comparing the functional traits of the microbial communities in the rhizospheres of wild rice and cultivated rice accessions are not yet available. In this study, we used metagenomic data from experimental rice plots to analyze the potential functional traits of the microbial communities in the rhizospheres of wild rice accessions originated from Africa and Asia in comparison with their related cultivated rice accessions. The functional potential of rhizosphere microbial communities involved in alanine, aspartate and glutamate metabolism, methane metabolism, carbon fixation pathways, citrate cycle (TCA cycle), pyruvate metabolism and lipopolysaccharide biosynthesis pathways were found to be enriched in the rhizomicrobiomes of wild rice accessions. Notably, methane metabolism in the rhizomicrobiomes of wild and cultivated rice accessions clearly differed. Key enzymes involved in methane production and utilization were overrepresented in the rhizomicrobiome samples obtained from wild rice accessions, suggesting that the rhizomicrobiomes of wild rice maintain a different ecological balance for methane production and utilization compared with those of the related cultivated rice accessions. A novel assessment of the impact of rice domestication on the primary metabolic pathways associated with microbial taxa in the rhizomicrobiomes was performed. Results indicated a strong impact of rice domestication on methane metabolism; a process that represents a critical function of the rhizosphere microbial community of rice. The findings of this study provide important information for future breeding of rice varieties with reduced methane emission during cultivation for sustainable agriculture.

Solutions of organic analytes of known mass fraction are typically used to calibrate the measurement processes used to determine these compounds in matrix samples. Appropriate value assignments and uncertainty calculations for calibration solutions are critical for accurate measurements. Evidence of successful participation in formal, relevant international comparisons is needed to document measurement capability claims (CMCs) made by national metrology institutes (NMIs) and designated institutes (DIs). To enable NMIs and DIs to update or establish their claims, in 2015 the Organic Analysis Working Group (OAWG) sponsored CCQM-K131 “Low-Polarity Analytes in a Multicomponent Organic Solution: Polycyclic Aromatic Hydrocarbons (PAHs) in Acetonitrile”. Polycyclic aromatic hydrocarbons (PAHs) result from combustion sources and are ubiquitous in environmental samples. The PAH congeners, benz[a]anthracene (BaA), benzo[a]pyrene (BaP), and naphthalene (Nap) were selected as the target analytes for CCQM-K131. These targets span the volatility range of PAHs found in environmental samples and include potentially problematic chromatographic separations. Nineteen NMIs participated in CCQM-K131. The consensus summary mass fractions for the three PAHs are in the range of (5 to 25) μg/g with relative standard deviations of (2.5 to 3.5) %. Successful participation in CCQM-K131 demonstrates the following measurement capabilities in determining mass fraction of organic compounds of moderate to insignificant volatility, molar mass of 100 g/mol up to 500 g/mol, and polarity pKow < −2 in a multicomponent organic solution ranging in mass fraction from 100 ng/g to 100 μg/g: (1) value assignment of primary reference standards (if in-house purity assessment carried out), (2) value assignment of single and/or multi-component organic solutions, and (3) separation and quantification using gas chromatography or liquid chromatography. KEY WORDS FOR SEARCH benz[a]anthracene (BaA), benzo[a]pyrene (BaP), gas chromatography(GC), isotope dilution (ID), liquid chromatography (LC), mass spectrometry (MS), naphthalene (Nap), organic calibration solution, polycyclic aromatic hydrocarbon (PAH) Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCQM, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

Extraction, chromatographic separation, and quantification of low-concentration organic compounds in complex matrices are core challenges for reference material producers and providers of calibration services. Evidence of successful participation in formal, relevant international comparisons is needed to document measurement capability claims made by national metrology institutes (NMIs) and designated institutes (DIs). To enable NMIs and DIs to update or establish their claims, in 2014 the Organic Analysis Working Group (OAWG) initiated CCQM-K95.1 “Low-Polarity Analytes in a Botanical Matrix: Polycyclic Aromatic Hydrocarbons (PAHs) in Tea”. This was a follow-on comparison from CCQM-K95 which was completed in 2014. The polycyclic aromatic hydrocarbons (PAHs) benz[a]anthracene (BaA) and benzo[a]pyrene (BaP) are considered priority pollutants by U.S. Environmental Protection Agency and are regulated contaminants in food, pose chromatographic separation challenges, and for which exist well-characterized measurement procedures and standard materials. BaA and BaP in a smoked tea were therefore selected as representative target measurands for CCQM-K95.1. Ten NMIs participated in CCQM-K95.1. The consensus summary mass fractions for the two PAHs are in the range of (50 to 70) ng/g with relative standard deviations of (6 to 10) %. Successful participation in CCQM K95.1 demonstrates the following measurement capabilities in determining mass fraction of organic compounds, with molar mass of 100 g/mol to 500 g/mol and having polarity pKow −2, in a botanical matrix ranging in mass fraction from 10 ng/g to 1000 ng/g: (1) value assignment of primary reference standards (if in-house purity assessment carried out), (2) value assignment of single and/or multi-component organic solutions, (3) extraction of analytes of interest from the matrix, (4) cleanup and separation of analytes of interest from interfering matrix or extract components, and (5) separation and quantification using gas chromatography or liquid chromatography. KEY WORDS FOR SEARCH benz[a]anthracene (BaA), benzo[a]pyrene (BaP), gas chromatography(GC), isotope dilution (ID), liquid chromatography (LC), mass spectrometry (MS), polycyclic aromatic hydrocarbon (PAH), yerba mate tea Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCQM, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

The second key comparison for the quantity pH, CCQM-K17, was carried out to assess the degree of equivalence of the national primary measurement procedures used to determine the pH of primary standard buffer solutions. The CCQM-K17 comparison allows estimations of the capability of ten national metrology institutes (NMIs) to determine the pH of a phthalate buffer of unknown concentration at different temperatures. The key comparison was co-ordinated by the CCQM Working Group on Electrochemical Analysis and piloted by the Physikalisch-Technische Bundesanstalt (PTB) with assistance from the National Institute of Standards and Technology (NIST) and the Slovak Institute of Metrology (SMU). The measurement results of the NMIs agreed not at the same level as for the first key comparison on pH CCQM-K9. The results obtained by seven of the eleven participants agree very well within the uncertainty stated by the participants. Four participants obtained results somewhat lower. The two groups of results are most obviously evident at a measurement temperature of 37 °C. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCQM, according to the provisions of the Mutual Recognition Arrangement (MRA).