72 results on '"Charles JP"'
Search Results
2. Power Line Communication System for Grid Distributed Renewable Energy
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Aillerie M, Petit P, Le Qt, T.V. Nguyen, Charles Jp, Laboratoire Matériaux Optiques, Photonique et Systèmes (LMOPS), and CentraleSupélec-Université de Lorraine (UL)
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Renewable energy ,Engineering ,MODBUS protocol ,020209 energy ,Direct current bus ,02 engineering and technology ,7. Clean energy ,Bus network ,0202 electrical engineering, electronic engineering, information engineering ,Electronic engineering ,Modbus ,Back-side bus ,Control bus ,System bus ,Smart dc-dc converter ,[PHYS.PHYS.PHYS-OPTICS]Physics [physics]/Physics [physics]/Optics [physics.optics] ,business.industry ,Electrical engineering ,Programmable logic controller ,Optimizer ,Power-line communication (PLC) ,021001 nanoscience & nanotechnology ,Power-line communication ,Local bus ,0210 nano-technology ,business - Abstract
International audience; The multi-sources nature of renewable energy production can be taken into account thanks to involving the solutions of distributed architecture based on individual DC-DC converters, connected to a direct current (DC) bus. Associated to this architecture, to assume simply the communication between the modules, one solution is the use of the DC bus power bus to support the communication between optimizers and a central controller using a power-line communication approach (PLC). The current work consists, at first, in the analysis of the pertinent information necessary to exchange between DC-DC converters and a central controller and, at second, by the development of a new hardware solution for the PLC from the conception of the communication system to the realization of a prototype. The various possible devices connected on the bus or networks are considered as programmable logic controllers, various sensors, micro controllers and grid inverters. At minima, the information to exchange between the various devices may include the maximumpower point of photovoltaic modules (MPP) and the temperature of the individual sources. At first, the ASCII Modbus protocol was chosen in the present work to assume the PLC communication on the DC bus. The interfacing circuitry between the DC bus and PLC controller is achieved by TRSV04 transceiver and power coupling circuit.
- Published
- 2015
3. Effect of auditing: evidence from variability of stock returns and trading volume
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Chen, Charles JP, Srinidhi, Bin, Su, Xijia, Chen, Charles JP, Srinidhi, Bin, and Su, Xijia
- Abstract
Although the benefits of auditing are uncontroversial in developed markets, there is scant evidence about its effect in emerging economies. Auditing derives its value by increasing the credibility of financial statements, which in turn increases investors’ reliance on them in developed markets. Financial statement information is common to all investors and therefore increased reliance on it should reduce divergence in investors’ assessment of firm value. We examine the effect of interim auditing on inter-investor divergence with a large sample of listed Chinese firms and find that it decreases more for firms whose reports are audited compared to non-audited firms. This finding suggests that investors rely more on audited financial information. Results of this study are robust to variations in event window length and specification of empirical measures.
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- 2014
4. Etude technico-économique d’un système hybride (aérogénérateur et moteur diesel) pour la production d’électricité.
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Merad, L, primary, Benyoucef, B, additional, and Charles, JP, additional
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- 2010
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5. 5636440 Process for manufacturing a hollow blade for a turbo-machine
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Bichon, Matthieu, primary, Douguet Charles, JP, additional, Lorieux Alain, GH, additional, Louesdon Yvon, MJ, additional, and Renou Florence, AN, additional
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- 1997
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6. Journaling: creating space for 'i.'.
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Charles JP
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- 2010
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7. Use of topical negative pressure with a lipidocolloid dressing: results of a clinical evaluation.
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Téot L, Lambert L, Ourabah Z, Bey E, Steenman C, Wierzbiecka E, Malikov S, Charles JP, Vives F, and Bohbot S
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- 2006
8. Nurse salaries in Washington DC and nationally.
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Charles JP, Piper S, Mailey SK, Davis P, and Baigis J
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The District of Columbia is overstaffed compared to the rest of the nation. The authors determined that a local area direct data collection was needed to examine nurse supply and salaries in the District of Columbia. An 11-item tool was developed by the DC Consortium and mailed to 187 employers of nurses in July of 1997. This sample included hospitals, long-term care facilities, home health agencies. The initial response rate was only 34%, however telephone and direct followup raised this to 81%. The ranges of salaries for several categories of nurses including nurse assistants, LPNs, and both basic and advanced practice nurses were tracked. Expected salary advances were also estimated according to institutional responses. 'Across DC facilities higher salaries and wider salary ranges exist for those with higher skill levels and advanced preparation.' 'Demand for skilled RNs in hospitals will increase by 36% by the year 2020.' [ABSTRACT FROM AUTHOR]
- Published
- 2000
9. 2D analysis of functional stress degradations on power VDMOS transistor
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Beydoun, B., Zoaeter, M., Alaeddine, A., Rachidi, I., Bahsoun, F., Charlot, JJ., and Charles, JP.
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- 2004
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10. Human walking biomechanics on sand substrates of varying foot sinking depth.
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Grant BF, Charles JP, D'Août K, Falkingham PL, and Bates KT
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Our current understanding of human gait is mostly based on studies using hard, level surfaces in a laboratory environment. However, humans navigate a wide range of different substrates every day, which incur varied demands on stability and efficiency. Several studies have shown that when walking on natural compliant substrates there is an increase in energy expenditure. However, these studies report variable changes to other aspects of gait such as muscle activity. Discrepancies between studies exist even within substrate types (e.g. sand), which suggests that relatively 'fine-scale' differences in substrate properties exert quantifiable influences on gait mechanics. In this study, we compare human walking mechanics on a range of sand substrates that vary in overall foot sinking depth. We demonstrate that variation in the overall sinking depth in sand is associated with statistically significant changes in joint angles and spatiotemporal variables in human walking but exerts relatively little influence on pendular energy recovery and muscle activations. Significant correlated changes between gait metrics are frequently recovered, suggesting a degree of coupled or mechanistic interaction in their variation within and across substrates. However, only walking speed (and its associated spatiotemporal variables) correlate frequently with absolute foot sinkage depth within individual sand substrates, but not across them. This suggests a causative relationship between walking speed and foot sinkage depth within individual sand substates is not coupled with systematic changes in joint kinematics and muscle activity in the same way as is observed across sand substrates., (© 2024. Published by The Company of Biologists Ltd.)
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- 2024
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11. The impacts of muscle-specific force-velocity properties on predictions of mouse muscle function during locomotion.
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Charles JP, Kissane RWP, and Askew GN
- Abstract
Introduction: The accuracy of musculoskeletal models and simulations as methods for predicting muscle functional outputs is always improving. However, even the most complex models contain various assumptions and simplifications in how muscle force generation is simulated. One common example is the application of a generalised ("generic") force-velocity relationship, derived from a limited data set to each muscle within a model, uniformly across all muscles irrespective of whether those muscles have "fast" or "slow" contractile properties. Methods: Using a previously built and validated musculoskeletal model and simulation of trotting in the mouse hindlimb, this work examines the predicted functional impact of applying muscle-specific force-velocity properties to typically fast (extensor digitorum longus; EDL) and slow-contracting (soleus; SOL) muscles. Results: Using "real" data led to EDL producing more positive work and acting significantly more spring-like, and soleus producing more negative work and acting more brake-like in function compared to muscles modelled using "generic" force-velocity data. Extrapolating these force-velocity properties to other muscles considered "fast" or "slow" also substantially impacted their predicted function. Importantly, this also further impacted EDL and SOL function beyond that seen when changing only their properties alone, to a point where they show an improved match to ex vivo experimental data. Discussion: These data suggest that further improvements to how musculoskeletal models and simulations predict muscle function should include the use of different values defining their force-velocity relationship depending on their fibre-type composition., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Charles, Kissane and Askew.)
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- 2024
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12. Attitudinal barriers to buprenorphine prescription and former waiver training.
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Gannon MP, Tello M, Wakeman S, Charles JP, Lipsitz S, and Samal L
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- Humans, Male, Female, Drug Prescriptions, Middle Aged, Adult, Analgesics, Opioid therapeutic use, Surveys and Questionnaires, Nurse Practitioners education, Physicians, Primary Care education, Narcotic Antagonists therapeutic use, Health Knowledge, Attitudes, Practice, Buprenorphine therapeutic use, Opioid-Related Disorders drug therapy, Attitude of Health Personnel, Opiate Substitution Treatment, Practice Patterns, Physicians'
- Abstract
Objective: Opioid use disorder (OUD) can be effectively treated with buprenorphine maintenance. Recent changes in federal policy have removed the requirement for physicians to complete additional training to apply for a Drug Enforcement Administration (DEA) waiver to prescribe buprenorphine. At that time, few primary care providers (PCPs) had completed the training for a DEA waiver to prescribe buprenorphine. Our goal was to identify addressable barriers that may persist despite updates to federal legislation., Design: A 42-item survey was distributed to 662 physicians and nurse practitioners at two academic medical centers with 100 respondents., Setting: The survey was sent via email and administered anonymously through SurveyMonkey., Patients and Participants: All participants were PCPs, and all PCPs at the two academic medical centers were eligible to participate., Interventions: PCPs responded to the survey by answering questions online., Main Outcome Measures: PCPs answered questions regarding previous buprenorphine waiver training status, local OUD prevalence, the effectiveness of OUD treatment modalities, and previous barriers to training., Results: Respondents were compared using descriptive statistics and logistic regression. Of the 100 respondents (response rate: 15 percent), 69 percent had not completed the training. Ninety-nine percent of PCPs agreed that OUD was an issue in their area, 94 percent saw patients with OUD, and 91 percent rated buprenorphine maintenance as a very effective treatment for OUD. Previously waivered and nonwaivered providers did not differ in their responses to these questions. Those who had been waivered were less likely to say they did not see enough patients with OUD to justify training (odds ratio [OR] 0.267, p = 0.005) and were less likely to express concern about allowing patients with OUD into their practice (OR 0.348, p = 0.020) than PCPs who had applied for the DEA waiver., Conclusions: Despite nonwaivered PCPs recognizing OUD's prevalence, they were concerned about allowing patients with OUD into their practice and said there were not enough patients to justify training. This suggests that attitudinal barriers are the most appropriate target for current intervention.
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- 2024
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13. Static versus dynamic muscle modelling in extinct species: a biomechanical case study of the Australopithecus afarensis pelvis and lower extremity.
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Wiseman ALA, Charles JP, and Hutchinson JR
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- Humans, Lower Extremity, Walking, Pelvis, Muscle, Skeletal physiology, Tendons physiology
- Abstract
The force a muscle generates is dependent on muscle structure, in which fibre length, pennation angle and tendon slack length all influence force production. Muscles are not preserved in the fossil record and these parameters must be estimated when constructing a musculoskeletal model. Here, we test the capability of digitally reconstructed muscles of the Australopithecus afarensis model (specimen AL 288-1) to maintain an upright, single-support limb posture. Our aim was to ascertain the influence that different architectural estimation methods have on muscle specialisation and on the subsequent inferences that can be extrapolated about limb function. Parameters were estimated for 36 muscles in the pelvis and lower limb and seven different musculoskeletal models of AL 288-1 were produced. These parameters represented either a 'static' Hill-type muscle model ( n = 4 variants) which only incorporated force, or instead a 'dynamic' Hill-type muscle model with an elastic tendon and fibres that could vary force-length-velocity properties ( n = 3 variants). Each muscle's fibre length, pennation angle, tendon slack length and maximal isometric force were calculated based upon different input variables. Static (inverse) simulations were computed in which the vertical and mediolateral ground reaction forces (GRF) were incrementally increased until limb collapse (simulation failure). All AL 288-1 variants produced somewhat similar simulated muscle activation patterns, but the maximum vertical GRF that could be exerted on a single limb was not consistent between models. Three of the four static-muscle models were unable to support >1.8 times body weight and produced models that under-performed. The dynamic-muscle models were stronger. Comparative results with a human model imply that similar muscle group activations between species are needed to sustain single-limb support at maximally applied GRFs in terms of the simplified static simulations ( e.g. , same walking pose) used here. This approach demonstrated the range of outputs that can be generated for a model of an extinct individual. Despite mostly comparable outputs, the models diverged mostly in terms of strength., Competing Interests: John R. Hutchinson is an Academic Editor for PeerJ., (©2024 Wiseman et al.)
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- 2024
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14. The Functional and Anatomical Impacts of Healthy Muscle Ageing.
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Charles JP and Bates KT
- Abstract
Even "healthy" muscle ageing is often associated with substantial changes in muscle form and function and can lead to increased injury risks and significant negative impacts on quality of life. However, the impacts of healthy muscle ageing on the fibre architecture and microstructure of different muscles and muscle groups throughout the lower limb, and how these are related to their functional capabilities, are not fully understood. Here, a previously established framework of magnetic resonance and diffusion tensor imaging was used to measure the muscle volumes, intramuscular fat, fibre lengths and physiological cross-sectional areas of 12 lower limb muscles in a cohort of healthily aged individuals, which were compared to the same data from a young population. Maximum muscle forces were also measured from an isokinetic dynamometer. The more substantial interpopulation differences in architecture and functional performance were located within the knee extensor muscles, while the aged muscles were also more heterogeneous in muscle fibre type and atrophy. The relationships between architecture and muscle strength were also more significant in the knee extensors compared to other functional groups. These data highlight the importance of the knee extensors as a potential focus for interventions to negate the impacts of muscle ageing.
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- 2023
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15. Editorial: The human foot: function in progress.
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Bates KT, Venkadesan M, Vereecke EE, Charles JP, and D'Août K
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Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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- 2023
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16. The Role of Artificial Intelligence in the Detection and Implementation of Biomarkers for Hepatocellular Carcinoma: Outlook and Opportunities.
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Mansur A, Vrionis A, Charles JP, Hancel K, Panagides JC, Moloudi F, Iqbal S, and Daye D
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Liver cancer is a leading cause of cancer-related death worldwide, and its early detection and treatment are crucial for improving morbidity and mortality. Biomarkers have the potential to facilitate the early diagnosis and management of liver cancer, but identifying and implementing effective biomarkers remains a major challenge. In recent years, artificial intelligence has emerged as a promising tool in the cancer sphere, and recent literature suggests that it is very promising in facilitating biomarker use in liver cancer. This review provides an overview of the status of AI-based biomarker research in liver cancer, with a focus on the detection and implementation of biomarkers for risk prediction, diagnosis, staging, prognostication, prediction of treatment response, and recurrence of liver cancers.
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- 2023
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17. Digital healthcare equity in primary care: implementing an integrated digital health navigator.
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Rodriguez JA, Charles JP, Bates DW, Lyles C, Southworth B, and Samal L
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- Humans, Delivery of Health Care, Ethnicity, Ambulatory Care Facilities, Primary Health Care, Healthcare Disparities, Diabetes Mellitus, Type 2 therapy
- Abstract
The 21st Century Cures Act and the rise of telemedicine led to renewed focus on patient portals. However, portal use disparities persist and are in part driven by limited digital literacy. To address digital disparities in primary care, we implemented an integrated digital health navigator program supporting portal use among patients with type II diabetes. During our pilot, we were able to enroll 121 (30.9%) patients onto the portal. Of newly enrolled or trained patients, 75 (62.0%) were Black, 13 (10.7%) were White, 23 (19.0%) were Hispanic/Latinx, 4 (3.3%) were Asian, 3 (2.5%) were of another race or ethnicity, and 3 (2.5%) had missing data. Our overall portal enrollment for clinic patients with type II diabetes increased for Hispanic/Latinx patients from 30% to 42% and Black patients from 49% to 61%. We used the Consolidated Framework for Implementation Research to understand key implementation components. Using our approach, other clinics can implement an integrated digital health navigator to support patient portal use., (© The Author(s) 2023. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
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- 2023
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18. The association between muscle architecture and muscle spindle abundance.
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Kissane RWP, Charles JP, Banks RW, and Bates KT
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- Humans, Mechanoreceptors physiology, Proprioception physiology, Movement physiology, Muscle Spindles physiology, Muscle, Skeletal physiology
- Abstract
Across the human body, skeletal muscles have a broad range of biomechanical roles that employ complex proprioceptive control strategies to successfully execute a desired movement. This information is derived from peripherally located sensory apparatus, the muscle spindle and Golgi tendon organs. The abundance of these sensory organs, particularly muscle spindles, is known to differ considerably across individual muscles. Here we present a comprehensive data set of 119 muscles across the human body including architectural properties (muscle fibre length, mass, pennation angle and physiological cross-sectional area) and statistically test their relationships with absolute spindle number and relative spindle abundance (the residual value of the linear regression of the log-transformed spindle number and muscle mass). These data highlight a significant positive relationship between muscle spindle number and fibre length, emphasising the importance of fibre length as an input into the central nervous system. However, there appears to be no relationship between muscles architecturally optimised to function as displacement specialists and their provision of muscle spindles. Additionally, while there appears to be regional differences in muscle spindle abundance, independent of muscle mass and fibre length, our data provide no support for the hypothesis that muscle spindle abundance is related to anatomical specialisation., (© 2023. The Author(s).)
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- 2023
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19. Skeletal muscle function underpins muscle spindle abundance.
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Kissane RWP, Charles JP, Banks RW, and Bates KT
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- Humans, Locomotion, Muscle Fibers, Skeletal physiology, Walking physiology, Muscle Spindles physiology, Muscle, Skeletal physiology
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Muscle spindle abundance is highly variable within and across species, but we currently lack any clear picture of the mechanistic causes or consequences of this variation. Previous use of spindle abundance as a correlate for muscle function implies a mechanical underpinning to this variation, but these ideas have not been tested. Herein, we use integrated medical imaging and subject-specific musculoskeletal models to investigate the relationship between spindle abundance, muscle architecture and in vivo muscle behaviour in the human locomotor system. These analyses indicate that muscle spindle number is tightly correlated with muscle fascicle length, absolute fascicle length change, velocity of fibre lengthening and active muscle forces during walking. Novel correlations between functional indices and spindle abundance are also recovered, where muscles with a high abundance predominantly function as springs, compared to those with a lower abundance mostly functioning as brakes during walking. These data demonstrate that muscle fibre length, lengthening velocity and fibre force are key physiological signals to the central nervous system and its modulation of locomotion, and that muscle spindle abundance may be tightly correlated to how a muscle generates work. These insights may be combined with neuromechanics and robotic studies of motor control to help further tease apart the functional drivers of muscle spindle composition.
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- 2022
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20. Impact of Kidney Failure Risk Prediction Clinical Decision Support on Monitoring and Referral in Primary Care Management of CKD: A Randomized Pragmatic Clinical Trial.
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Samal L, D'Amore JD, Gannon MP, Kilgallon JL, Charles JP, Mann DM, Siegel LC, Burdge K, Shaykevich S, Lipsitz S, Waikar SS, Bates DW, and Wright A
- Abstract
Rationale & Objective: To design and implement clinical decision support incorporating a validated risk prediction estimate of kidney failure in primary care clinics and to evaluate the impact on stage-appropriate monitoring and referral., Study Design: Block-randomized, pragmatic clinical trial., Setting & Participants: Ten primary care clinics in the greater Boston area. Patients with stage 3-5 chronic kidney disease (CKD) were included. Patients were randomized within each primary care physician panel through a block randomization approach. The trial occurred between December 4, 2015, and December 3, 2016., Intervention: Point-of-care noninterruptive clinical decision support that delivered the 5-year kidney failure risk equation as well as recommendations for stage-appropriate monitoring and referral to nephrology., Outcomes: The primary outcome was as follows: Urine and serum laboratory monitoring test findings measured at one timepoint 6 months after the initial primary care visit and analyzed only in patients who had not undergone the recommended monitoring test in the preceding 12 months. The secondary outcome was nephrology referral in patients with a calculated kidney failure risk equation value of >10% measured at one timepoint 6 months after the initial primary care visit., Results: The clinical decision support application requested and processed 569,533 Continuity of Care Documents during the study period. Of these, 41,842 (7.3%) documents led to a diagnosis of stage 3, 4, or 5 CKD by the clinical decision support application. A total of 5,590 patients with stage 3, 4, or 5 CKD were randomized and included in the study. The link to the clinical decision support application was clicked 122 times by 57 primary care physicians. There was no association between the clinical decision support intervention and the primary outcome. There was a small but statistically significant difference in nephrology referral, with a higher rate of referral in the control arm., Limitations: Contamination within provider and clinic may have attenuated the impact of the intervention and may have biased the result toward null., Conclusions: The noninterruptive design of the clinical decision support was selected to prevent cognitive overload; however, the design led to a very low rate of use and ultimately did not improve stage-appropriate monitoring., Funding: Research reported in this publication was supported by the National Institute of Diabetes and Digestive and Kidney Diseases of the National Institutes of Health under award K23DK097187., Trial Registration: ClinicalTrials.gov Identifier: NCT02990897., (© 2022 The Authors.)
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- 2022
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21. Oral enzymatic detoxification system: Insights obtained from proteome analysis to understand its potential impact on aroma metabolization.
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Schwartz M, Neiers F, Charles JP, Heydel JM, Muñoz-González C, Feron G, and Canon F
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- Mouth, Proteomics, Saliva, Odorants, Proteome
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The oral cavity is an entry path into the body, enabling the intake of nutrients but also leading to the ingestion of harmful substances. Thus, saliva and oral tissues contain enzyme systems that enable the early neutralization of xenobiotics as soon as they enter the body. Based on recently published oral proteomic data from several research groups, this review identifies and compiles the primary detoxification enzymes (also known as xenobiotic-metabolizing enzymes) present in saliva and the oral epithelium. The functions and the metabolic activity of these enzymes are presented. Then, the activity of these enzymes in saliva, which is an extracellular fluid, is discussed with regard to the salivary parameters. The next part of the review presents research evidencing oral metabolization of aroma compounds and the putative involved enzymes. The last part discusses the potential role of these enzymatic reactions on the perception of aroma compounds in light of recent pieces of evidence of in vivo oral metabolization of aroma compounds affecting their release in mouth and their perception. Thus, this review highlights different enzymes appearing as relevant to explain aroma metabolism in the oral cavity. It also points out that further works are needed to unravel the effect of the oral enzymatic detoxification system on the perception of food flavor in the context of the consumption of complex food matrices, while considering the impact of food oral processing. Thus, it constitutes a basis to explore these biochemical mechanisms and their impact on flavor perception., (© 2021 The Authors. Comprehensive Reviews in Food Science and Food Safety published by Wiley Periodicals LLC on behalf of Institute of Food Technologists.)
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- 2021
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22. Foot anatomy, walking energetics, and the evolution of human bipedalism.
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Charles JP, Grant B, D'Août K, and Bates KT
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- Biological Evolution, Biomechanical Phenomena, Gait, Humans, Locomotion, Running, Energy Metabolism, Foot anatomy & histology, Walking
- Abstract
Interspecies differences in locomotor efficiency have been extensively researched, but within-species variation in the metabolic cost of walking and its underlying causes have received much less attention. This is somewhat surprising given the importance of walking energetics to natural selection, and the fact that the mechanical efficiency of striding bipedalism in modern humans is thought to be related in some part to the unique morphology of the human foot. Previous studies of human running have linked specific anatomical traits in the foot to variations in locomotor energetics to provide insight into form-function relationships in human evolution. However, such studies are relatively rare, particularly for walking. In this study, relationships between a range of functional musculoskeletal traits in the human lower limb and the energetics of walking over compliant and noncompliant substrates are examined, with particular focus on the lower limb and foot. Twenty-nine young, healthy individuals walked across three surfaces-a noncompliant laboratory floor, and compliant 6 cm and 13 cm thick foams-at self-selected speeds while oxygen consumption was measured, from which the metabolic cost of transport was calculated. Lower limb lengths, calcaneus lengths, foot shape indices, and maximum isometric plantarflexion torques were also measured and subsequently tested for relationships with metabolic cost over these surfaces using linear regression. It was found that metabolic cost varied considerably between individuals within and across substrate types, but this variation was not statistically related to or explained by variations in musculoskeletal parameters considered to be adaptively important to efficient bipedal locomotion. This therefore provides no supportive evidence that variations in these gross anatomical parameters confer significant advantages to the efficiency of walking, and therefore suggest caution in the use of similar metrics to infer differences in walking energetics in closely related fossil species., Competing Interests: Declaration of competing interest The authors declare that they have no competing interests., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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23. Predictions of Anterior Cruciate Ligament Dynamics From Subject-Specific Musculoskeletal Models and Dynamic Biplane Radiography.
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Charles JP, Fu FH, and Anderst WJ
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- Humans, Male, Biomechanical Phenomena, Radiography, Adult, Mechanical Phenomena, Models, Biological, Female, Knee Joint physiology, Knee Joint diagnostic imaging, Patient-Specific Modeling, Anterior Cruciate Ligament diagnostic imaging, Anterior Cruciate Ligament physiology
- Abstract
In vivo knee ligament forces are important to consider for informing rehabilitation or clinical interventions. However, they are difficult to directly measure during functional activities. Musculoskeletal models and simulations have become the primary methods by which to estimate in vivo ligament loading. Previous estimates of anterior cruciate ligament (ACL) forces range widely, suggesting that individualized anatomy may have an impact on these predictions. Using ten subject-specific (SS) lower limb musculoskeletal models, which include individualized musculoskeletal geometry, muscle architecture, and six degree-of-freedom knee joint kinematics from dynamic biplane radiography (DBR), this study provides SS estimates of ACL force (anteromedial-aACL; and posterolateral-pACL bundles) during the full gait cycle of treadmill walking. These forces are compared to estimates from scaled-generic (SG) musculoskeletal models to assess the effect of musculoskeletal knee joint anatomy on predicted forces and the benefit of SS modeling in this context. On average, the SS models demonstrated a double force peak during stance (0.39-0.43 xBW per bundle), while only a single force peak during stance was observed in the SG aACL. No significant differences were observed between continuous SG and SS ACL forces; however, root mean-squared differences between SS and SG predictions ranged from 0.08 xBW to 0.27 xBW, suggesting SG models do not reliably reflect forces predicted by SS models. Force predictions were also found to be highly sensitive to ligament resting length, with ±10% variations resulting in force differences of up to 84%. Overall, this study demonstrates the sensitivity of ACL force predictions to SS anatomy, specifically musculoskeletal joint geometry and ligament resting lengths, as well as the feasibility for generating SS musculoskeletal models for a group of subjects to predict in vivo tissue loading during functional activities., (Copyright © 2021 by ASME.)
- Published
- 2021
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24. Subject-specific muscle properties from diffusion tensor imaging significantly improve the accuracy of musculoskeletal models.
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Charles JP, Grant B, D'Août K, and Bates KT
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- Adult, Aged, 80 and over, Female, Humans, Male, Muscle, Skeletal physiology, Torque, Diffusion Tensor Imaging, Muscle, Skeletal diagnostic imaging, Patient-Specific Modeling
- Abstract
Musculoskeletal modelling is an important platform on which to study the biomechanics of morphological structures in vertebrates and is widely used in clinical, zoological and palaeontological fields. The popularity of this approach stems from the potential to non-invasively quantify biologically important but difficult-to-measure functional parameters. However, while it is known that model predictions are highly sensitive to input values, it is standard practice to build models by combining musculoskeletal data from different sources resulting in 'generic' models for a given species. At present, there are little quantitative data on how merging disparate anatomical data in models impacts the accuracy of these functional predictions. This issue is addressed herein by quantifying the accuracy of both subject-specific human limb models containing individualised muscle force-generating properties and models built using generic properties from both elderly and young individuals, relative to experimental muscle torques obtained from an isokinetic dynamometer. The results show that subject-specific models predict isokinetic muscle torques to a greater degree of accuracy than generic models at the ankle (root-mean-squared error - 7.9% vs. 49.3% in elderly anatomy-based models), knee (13.2% vs. 57.3%) and hip (21.9% vs. 32.8%). These results have important implications for the choice of musculoskeletal properties in future modelling studies, and the relatively high level of accuracy achieved in the subject-specific models suggests that such models can potentially address questions about inter-subject variations of muscle functions. However, despite relatively high levels of overall accuracy, models built using averaged generic muscle architecture data from young, healthy individuals may lack the resolution and accuracy required to study such differences between individuals, at least in certain circumstances. The results do not wholly discourage the continued use of averaged generic data in musculoskeletal modelling studies but do emphasise the need for to maximise the accuracy of input values if studying intra-species form-function relationships in the musculoskeletal system., (© 2020 The Authors. Journal of Anatomy published by John Wiley & Sons Ltd on behalf of Anatomical Society.)
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- 2020
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25. Collisional mechanism of ligand release by Bombyxmori JHBP, a member of the TULIP / Takeout family of lipid transporters.
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Dupas S, Neiers F, Granon E, Rougeux E, Dupont S, Beney L, Bousquet F, Shaik HA, Briand L, Wojtasek H, and Charles JP
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- Animals, Biological Transport, Bombyx genetics, Bombyx growth & development, Bombyx metabolism, Carrier Proteins metabolism, Insect Proteins metabolism, Ligands, Lipid Metabolism, Moths growth & development, Moths metabolism, Carrier Proteins genetics, Insect Proteins genetics, Moths genetics
- Abstract
Juvenile hormones (JHs) regulate important processes in insects, such as postembryonic development and reproduction. In the hemolymph of Lepidoptera, these lipophilic sesquiterpenic hormones are transported from their site of synthesis to target tissues by high affinity carriers, the juvenile hormone binding proteins (JHBPs). Lepidopteran JHBPs belong to a recently uncovered, yet very ancient family of proteins sharing a common lipid fold (TULIP domain) and involved in shuttling various lipid ligands. One important, but poorly understood aspect of JHs action, is the mechanism of hormone transfer to or through the plasma membranes of target cells. Since many membrane-active peptides and proteins, such as the pore-forming bacterial toxins, are activated by low pH or interaction with phospholipid membranes, we have examined the effect of these factors on JH binding by JHBPs. The affinity of Bombyx mori and Manduca sexta JHBPs for JH III was determined by the DCC assay, equilibrium dialysis, and isothermal titration calorimetry, and found to be greatly reduced at low pH, in agreement with previous observations. Loss of binding was accompanied by changes in fluorescence and near-UV CD spectra, indicating significant changes in protein structure in the environment of aromatic residues. The apparent dissociation rate constant (k
off ) of the JHBP-JH III complex was greater at acidic pH, suggesting that low pH favors ligand release by opening of the binding pocket. The affinity of recombinant B. mori JHBP (rBmJHBP) was also decreased in the presence of anionic phospholipid vesicles. Measurements of steady-state fluorescence anisotropy with the lipophilic probe TMA-DPH demonstrated that rBmJHBP specifically interacts with anionic membranes. These results suggest the existence of a collisional mechanism for ligand release that may be important for delivery of JHs to the target cells, and could be relevant to the function of related members of this emerging family of lipid-transport proteins., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2020
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26. In vivo human lower limb muscle architecture dataset obtained using diffusion tensor imaging.
- Author
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Charles JP, Suntaxi F, and Anderst WJ
- Subjects
- Adult, Female, Humans, Male, Organ Size, Databases as Topic, Diffusion Tensor Imaging, Lower Extremity anatomy & histology, Lower Extremity diagnostic imaging, Muscle, Skeletal anatomy & histology, Muscle, Skeletal diagnostic imaging
- Abstract
'Gold standard' reference sets of human muscle architecture are based on elderly cadaveric specimens, which are unlikely to be representative of a large proportion of the human population. This is important for musculoskeletal modeling, where the muscle force-generating properties of generic models are defined by these data but may not be valid when applied to models of young, healthy individuals. Obtaining individualized muscle architecture data in vivo is difficult, however diffusion tensor magnetic resonance imaging (DTI) has recently emerged as a valid method of achieving this. DTI was used here to provide an architecture data set of 20 lower limb muscles from 10 healthy adults, including muscle fiber lengths, which are important inputs for Hill-type muscle models commonly used in musculoskeletal modeling. Maximum isometric force and muscle fiber lengths were found not to scale with subject anthropometry, suggesting that these factors may be difficult to predict using scaling or optimization algorithms. These data also highlight the high level of anatomical variation that exists between individuals in terms of lower limb muscle architecture, which supports the need of incorporating subject-specific force-generating properties into musculoskeletal models to optimize their accuracy for clinical evaluation., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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27. Determining Subject-Specific Lower-Limb Muscle Architecture Data for Musculoskeletal Models Using Diffusion Tensor Imaging.
- Author
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Charles JP, Moon CH, and Anderst WJ
- Abstract
Accurate individualized muscle architecture data are crucial for generating subject-specific musculoskeletal models to investigate movement and dynamic muscle function. Diffusion tensor imaging (DTI) magnetic resonance (MR) imaging has emerged as a promising method of gathering muscle architecture data in vivo; however, its accuracy in estimating parameters such as muscle fiber lengths for creating subject-specific musculoskeletal models has not been tested. Here, we provide a validation of the method of using anatomical magnetic resonance imaging (MRI) and DTI to gather muscle architecture data in vivo by directly comparing those data obtained from MR scans of three human cadaveric lower limbs to those from dissections. DTI was used to measure fiber lengths and pennation angles, while the anatomical images were used to estimate muscle mass, which were used to calculate physiological cross-sectional area (PCSA). The same data were then obtained through dissections, where it was found that on average muscle masses and fiber lengths matched well between the two methods (4% and 1% differences, respectively), while PCSA values had slightly larger differences (6%). Overall, these results suggest that DTI is a promising technique to gather in vivo muscle architecture data, but further refinement and complementary imaging techniques may be needed to realize these goals., (Copyright © 2019 by ASME.)
- Published
- 2019
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28. A Dynamic Simulation of Musculoskeletal Function in the Mouse Hindlimb During Trotting Locomotion.
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Charles JP, Cappellari O, and Hutchinson JR
- Abstract
Mice are often used as animal models of various human neuromuscular diseases, and analysis of these models often requires detailed gait analysis. However, little is known of the dynamics of the mouse musculoskeletal system during locomotion. In this study, we used computer optimization procedures to create a simulation of trotting in a mouse, using a previously developed mouse hindlimb musculoskeletal model in conjunction with new experimental data, allowing muscle forces, activation patterns, and levels of mechanical work to be estimated. Analyzing musculotendon unit (MTU) mechanical work throughout the stride allowed a deeper understanding of their respective functions, with the rectus femoris MTU dominating the generation of positive and negative mechanical work during the swing and stance phases. This analysis also tested previous functional inferences of the mouse hindlimb made from anatomical data alone, such as the existence of a proximo-distal gradient of muscle function, thought to reflect adaptations for energy-efficient locomotion. The results do not strongly support the presence of this gradient within the mouse musculoskeletal system, particularly given relatively high negative net work output from the ankle plantarflexor MTUs, although more detailed simulations could test this further. This modeling analysis lays a foundation for future studies of the control of vertebrate movement through the development of neuromechanical simulations.
- Published
- 2018
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29. Are mice good models for human neuromuscular disease? Comparing muscle excursions in walking between mice and humans.
- Author
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Hu X, Charles JP, Akay T, Hutchinson JR, and Blemker SS
- Subjects
- Animals, Biomechanical Phenomena, Gait, Hindlimb physiology, Humans, Lower Extremity physiology, Mice, Models, Biological, Muscle Fibers, Skeletal physiology, Tendons physiology, Disease Models, Animal, Muscle, Skeletal physiology, Neuromuscular Diseases physiopathology, Walking
- Abstract
Background: The mouse is one of the most widely used animal models to study neuromuscular diseases and test new therapeutic strategies. However, findings from successful pre-clinical studies using mouse models frequently fail to translate to humans due to various factors. Differences in muscle function between the two species could be crucial but often have been overlooked. The purpose of this study was to evaluate and compare muscle excursions in walking between mice and humans., Methods: Recently published musculoskeletal models of the mouse hindlimb and human lower limb were used to simulate muscle-tendon dynamics during mouse and human walking, a key daily activity. Muscle fiber length changes (fiber excursions) of 25 muscle homologs in the two species were calculated from these simulations and then compared. To understand potential causes of differences in fiber excursions in walking, joint excursions and muscle moment arms were also compared across one gait cycle., Results: Most muscles (19 out of 25 muscles) of the mouse hindlimb had much smaller fiber excursions as compared to human lower limb muscles during walking. For these muscles, fiber excursions in mice were only 48 ± 19% of those in humans. The differences in fiber excursion between the two species were primarily due to the reduced joint excursions and smaller muscle moment arms in mice as compared to humans., Conclusions: Since progressive neuromuscular diseases, such as Duchenne muscular dystrophy, are known to be accelerated by damage accumulated from active muscle lengthening, these results suggest that biomechanical differences in muscle function during walking between mice and humans may impede the translations of knowledge gained from mouse models to humans. This knowledge would add a fresh perspective on how pre-clinical studies on mice might be better designed to improve translation to human clinical trials.
- Published
- 2017
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30. Mutant p53 promotes tumor progression and metastasis by the endoplasmic reticulum UDPase ENTPD5.
- Author
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Vogiatzi F, Brandt DT, Schneikert J, Fuchs J, Grikscheit K, Wanzel M, Pavlakis E, Charles JP, Timofeev O, Nist A, Mernberger M, Kantelhardt EJ, Siebolts U, Bartel F, Jacob R, Rath A, Moll R, Grosse R, and Stiewe T
- Subjects
- Animals, Apoptosis, Calnexin metabolism, Calreticulin metabolism, Carcinogenesis metabolism, Cell Line, Tumor, Disease Progression, Female, Glycoproteins metabolism, Glycosylation, Humans, Male, Mice, Mutant Proteins genetics, Mutant Proteins physiology, Mutation, Neoplasm Invasiveness, Prognosis, RNA Interference, RNA, Small Interfering metabolism, Sp1 Transcription Factor metabolism, Endoplasmic Reticulum metabolism, Neoplasm Metastasis, Oncogene Proteins metabolism, Pyrophosphatases metabolism, Tumor Suppressor Protein p53 genetics, Tumor Suppressor Protein p53 physiology
- Abstract
Mutations in the p53 tumor suppressor gene are the most frequent genetic alteration in cancer and are often associated with progression from benign to invasive stages with metastatic potential. Mutations inactivate tumor suppression by p53, and some endow the protein with novel gain of function (GOF) properties that actively promote tumor progression and metastasis. By comparative gene expression profiling of p53-mutated and p53-depleted cancer cells, we identified ectonucleoside triphosphate diphosphohydrolase 5 (ENTPD5) as a mutant p53 target gene, which functions as a uridine 5'-diphosphatase (UDPase) in the endoplasmic reticulum (ER) to promote the folding of N-glycosylated membrane proteins. A comprehensive pan-cancer analysis revealed a highly significant correlation between p53 GOF mutations and ENTPD5 expression. Mechanistically, mutp53 is recruited by Sp1 to the ENTPD5 core promoter to induce its expression. We show ENTPD5 to be a mediator of mutant p53 GOF activity in clonogenic growth, architectural tissue remodeling, migration, invasion, and lung colonization in an experimental metastasis mouse model. Our study reveals folding of N-glycosylated membrane proteins in the ER as a mechanism underlying the metastatic progression of tumors with mutp53 that could provide new possibilities for cancer treatment., Competing Interests: The authors declare no conflict of interest.
- Published
- 2016
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31. Emergency department care for trauma patients in settings of active conflict versus urban violence: all of the same calibre?
- Author
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Valles P, Van den Bergh R, van den Boogaard W, Tayler-Smith K, Gayraud O, Mammozai BA, Nasim M, Cheréstal S, Majuste A, Charles JP, and Trelles M
- Subjects
- Adolescent, Adult, Afghanistan, Aged, Child, Cross-Sectional Studies, Delayed Diagnosis, Emergencies, Female, Haiti, Humans, Male, Middle Aged, Morbidity, Physicians, Triage, Workload, Wounds and Injuries mortality, Armed Conflicts, Emergency Medical Services, Emergency Service, Hospital, Quality of Health Care, Urban Population, Violence, Wounds and Injuries therapy
- Abstract
Background: Trauma is a leading cause of death and represents a major problem in developing countries where access to good quality emergency care is limited. Médecins Sans Frontières delivered a standard package of care in two trauma emergency departments (EDs) in different violence settings: Kunduz, Afghanistan, and Tabarre, Haiti. This study aims to assess whether this standard package resulted in similar performance in these very different contexts., Methods: A cross-sectional study using routine programme data, comparing patient characteristics and outcomes in two EDs over the course of 2014., Results: 31 158 patients presented to the EDs: 22 076 in Kunduz and 9082 in Tabarre. Patient characteristics, such as delay in presentation (29.6% over 24 h in Kunduz, compared to 8.4% in Tabarre), triage score, and morbidity pattern differed significantly between settings. Nevertheless, both EDs showed an excellent performance, demonstrating low proportions of mortality (0.1% for both settings) and left without being seen (1.3% for both settings), and acceptable triage performance. Physicians' maximum working capacity was exceeded in both centres, and mainly during rush hours., Conclusions: This study supports for the first time the plausibility of using the same ED package in different settings. Mapping of patient attendance is essential for planning of human resources needs., (© The Author 2016. Published by Oxford University Press on behalf of Royal Society of Tropical Medicine and Hygiene.)
- Published
- 2016
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32. Muscle moment arms and sensitivity analysis of a mouse hindlimb musculoskeletal model.
- Author
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Charles JP, Cappellari O, Spence AJ, Wells DJ, and Hutchinson JR
- Subjects
- Animals, Biomechanical Phenomena, Female, Hindlimb, Locomotion physiology, Mice, Mice, Inbred C57BL, X-Ray Microtomography, Bone and Bones anatomy & histology, Bone and Bones physiology, Computer Simulation, Models, Animal, Muscle, Skeletal anatomy & histology, Muscle, Skeletal physiology
- Abstract
Musculoskeletal modelling has become a valuable tool with which to understand how neural, muscular, skeletal and other tissues are integrated to produce movement. Most musculoskeletal modelling work has to date focused on humans or their close relatives, with few examples of quadrupedal animal limb models. A musculoskeletal model of the mouse hindlimb could have broad utility for questions in medicine, genetics, locomotion and neuroscience. This is due to this species' position as a premier model of human disease, having an array of genetic tools for manipulation of the animal in vivo, and being a small quadruped, a category for which few models exist. Here, the methods used to develop the first three-dimensional (3D) model of a mouse hindlimb and pelvis are described. The model, which represents bones, joints and 39 musculotendon units, was created through a combination of previously gathered muscle architecture data from microdissections, contrast-enhanced micro-computed tomography (CT) scanning and digital segmentation. The model allowed muscle moment arms as well as muscle forces to be estimated for each musculotendon unit throughout a range of joint rotations. Moment arm analysis supported the reliability of musculotendon unit placement within the model, and comparison to a previously published rat hindlimb model further supported the model's reliability. A sensitivity analysis performed on both the force-generating parameters and muscle's attachment points of the model indicated that the maximal isometric muscle moment is generally most sensitive to changes in either tendon slack length or the coordinates of insertion, although the degree to which the moment is affected depends on several factors. This model represents the first step in the creation of a fully dynamic 3D computer model of the mouse hindlimb and pelvis that has application to neuromuscular disease, comparative biomechanics and the neuromechanical basis of movement. Capturing the morphology and dynamics of the limb, it enables future dissection of the complex interactions between the nervous and musculoskeletal systems as well as the environment., (© 2016 The Authors. Journal of Anatomy published by John Wiley & Sons Ltd on behalf of Anatomical Society.)
- Published
- 2016
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33. Musculoskeletal Geometry, Muscle Architecture and Functional Specialisations of the Mouse Hindlimb.
- Author
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Charles JP, Cappellari O, Spence AJ, Hutchinson JR, and Wells DJ
- Subjects
- Adaptation, Physiological, Animals, Female, Hindlimb diagnostic imaging, Imaging, Three-Dimensional, Mice, Mice, Inbred C57BL, Muscle, Skeletal diagnostic imaging, Musculoskeletal Physiological Phenomena, Musculoskeletal System anatomy & histology, Musculoskeletal System diagnostic imaging, X-Ray Microtomography, Hindlimb anatomy & histology, Hindlimb physiology, Muscle, Skeletal anatomy & histology, Muscle, Skeletal physiology
- Abstract
Mice are one of the most commonly used laboratory animals, with an extensive array of disease models in existence, including for many neuromuscular diseases. The hindlimb is of particular interest due to several close muscle analogues/homologues to humans and other species. A detailed anatomical study describing the adult morphology is lacking, however. This study describes in detail the musculoskeletal geometry and skeletal muscle architecture of the mouse hindlimb and pelvis, determining the extent to which the muscles are adapted for their function, as inferred from their architecture. Using I2KI enhanced microCT scanning and digital segmentation, it was possible to identify 39 distinct muscles of the hindlimb and pelvis belonging to nine functional groups. The architecture of each of these muscles was determined through microdissections, revealing strong architectural specialisations between the functional groups. The hip extensors and hip adductors showed significantly stronger adaptations towards high contraction velocities and joint control relative to the distal functional groups, which exhibited larger physiological cross sectional areas and longer tendons, adaptations for high force output and elastic energy savings. These results suggest that a proximo-distal gradient in muscle architecture exists in the mouse hindlimb. Such a gradient has been purported to function in aiding locomotor stability and efficiency. The data presented here will be especially valuable to any research with a focus on the architecture or gross anatomy of the mouse hindlimb and pelvis musculature, but also of use to anyone interested in the functional significance of muscle design in relation to quadrupedal locomotion.
- Published
- 2016
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34. ΔNp63 activates the Fanconi anemia DNA repair pathway and limits the efficacy of cisplatin treatment in squamous cell carcinoma.
- Author
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Bretz AC, Gittler MP, Charles JP, Gremke N, Eckhardt I, Mernberger M, Mandic R, Thomale J, Nist A, Wanzel M, and Stiewe T
- Subjects
- Carcinoma, Squamous Cell drug therapy, Carcinoma, Squamous Cell metabolism, Carcinoma, Squamous Cell pathology, Cell Line, Tumor, Cell Proliferation, Cell Survival, Cells, Cultured, DNA-Binding Proteins metabolism, Drug Resistance, Neoplasm, Enhancer Elements, Genetic, Fanconi Anemia Complementation Group D2 Protein genetics, Fanconi Anemia Complementation Group D2 Protein metabolism, Humans, Transcription Factors physiology, Transcriptional Activation, Tumor Suppressor Proteins physiology, Ubiquitin-Protein Ligases metabolism, Antineoplastic Agents therapeutic use, Carcinoma, Squamous Cell genetics, Cisplatin therapeutic use, DNA Repair, Transcription Factors metabolism, Tumor Suppressor Proteins metabolism
- Abstract
TP63, a member of the p53 gene family gene, encodes the ΔNp63 protein and is one of the most frequently amplified genes in squamous cell carcinomas (SCC) of the head and neck (HNSCC) and lungs (LUSC). Using an epiallelic series of siRNAs with intrinsically different knockdown abilities, we show that the complete loss of ΔNp63 strongly impaired cell proliferation, whereas partial ΔNp63 depletion rendered cells hypersensitive to cisplatin accompanied by an accumulation of DNA damage. Expression profiling revealed wide-spread transcriptional regulation of DNA repair genes and in particular Fanconi anemia (FA) pathway components such as FANCD2 and RAD18 - known to be crucial for the repair of cisplatin-induced interstrand crosslinks. In SCC patients ΔNp63 levels significantly correlate with FANCD2 and RAD18 expression confirming ΔNp63 as a key activator of the FA pathway in vivo Mechanistically, ΔNp63 bound an upstream enhancer of FANCD2 inactive in primary keratinocytes but aberrantly activated by ΔNp63 in SCC. Consistently, depletion of FANCD2 sensitized to cisplatin similar to depletion of ΔNp63. Together, our results demonstrate that ΔNp63 directly activates the FA pathway in SCC and limits the efficacy of cisplatin treatment. Targeting ΔNp63 therefore would not only inhibit SCC proliferation but also sensitize tumors to chemotherapy., (© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2016
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35. CRISPR-Cas9-based target validation for p53-reactivating model compounds.
- Author
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Wanzel M, Vischedyk JB, Gittler MP, Gremke N, Seiz JR, Hefter M, Noack M, Savai R, Mernberger M, Charles JP, Schneikert J, Bretz AC, Nist A, and Stiewe T
- Subjects
- Cisplatin pharmacology, DNA Damage drug effects, DNA Damage genetics, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Drug Resistance, Neoplasm genetics, Fanconi Anemia Complementation Group D2 Protein genetics, Fanconi Anemia Complementation Group D2 Protein metabolism, Gene Expression Regulation, HCT116 Cells drug effects, Humans, Morpholines pharmacology, Proto-Oncogene Proteins c-mdm2 metabolism, TOR Serine-Threonine Kinases antagonists & inhibitors, TOR Serine-Threonine Kinases metabolism, Ubiquitin-Protein Ligases, CRISPR-Cas Systems, Drug Resistance, Neoplasm drug effects, Furans pharmacology, Genes, p53 physiology, Molecular Targeted Therapy methods
- Abstract
Inactivation of the p53 tumor suppressor by Mdm2 is one of the most frequent events in cancer, so compounds targeting the p53-Mdm2 interaction are promising for cancer therapy. Mechanisms conferring resistance to p53-reactivating compounds are largely unknown. Here we show using CRISPR-Cas9-based target validation in lung and colorectal cancer that the activity of nutlin, which blocks the p53-binding pocket of Mdm2, strictly depends on functional p53. In contrast, sensitivity to the drug RITA, which binds the Mdm2-interacting N terminus of p53, correlates with induction of DNA damage. Cells with primary or acquired RITA resistance display cross-resistance to DNA crosslinking compounds such as cisplatin and show increased DNA cross-link repair. Inhibition of FancD2 by RNA interference or pharmacological mTOR inhibitors restores RITA sensitivity. The therapeutic response to p53-reactivating compounds is therefore limited by compound-specific resistance mechanisms that can be resolved by CRISPR-Cas9-based target validation and should be considered when allocating patients to p53-reactivating treatments.
- Published
- 2016
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36. Genetic Evidence for Function of the bHLH-PAS Protein Gce/Met As a Juvenile Hormone Receptor.
- Author
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Jindra M, Uhlirova M, Charles JP, Smykal V, and Hill RJ
- Subjects
- Animals, Animals, Genetically Modified, Cell Line, Drosophila melanogaster genetics, Fatty Acids, Unsaturated metabolism, Gene Expression Regulation, Developmental genetics, Protein Binding physiology, Signal Transduction genetics, Basic Helix-Loop-Helix Transcription Factors genetics, Drosophila Proteins genetics, Drosophila melanogaster embryology, Juvenile Hormones metabolism, Transcription Factors genetics
- Abstract
Juvenile hormones (JHs) play a major role in controlling development and reproduction in insects and other arthropods. Synthetic JH-mimicking compounds such as methoprene are employed as potent insecticides against significant agricultural, household and disease vector pests. However, a receptor mediating effects of JH and its insecticidal mimics has long been the subject of controversy. The bHLH-PAS protein Methoprene-tolerant (Met), along with its Drosophila melanogaster paralog germ cell-expressed (Gce), has emerged as a prime JH receptor candidate, but critical evidence that this protein must bind JH to fulfill its role in normal insect development has been missing. Here, we show that Gce binds a native D. melanogaster JH, its precursor methyl farnesoate, and some synthetic JH mimics. Conditional on this ligand binding, Gce mediates JH-dependent gene expression and the hormone's vital role during development of the fly. Any one of three different single amino acid mutations in the ligand-binding pocket that prevent binding of JH to the protein block these functions. Only transgenic Gce capable of binding JH can restore sensitivity to JH mimics in D. melanogaster Met-null mutants and rescue viability in flies lacking both Gce and Met that would otherwise die at pupation. Similarly, the absence of Gce and Met can be compensated by expression of wild-type but not mutated transgenic D. melanogaster Met protein. This genetic evidence definitively establishes Gce/Met in a JH receptor role, thus resolving a long-standing question in arthropod biology.
- Published
- 2015
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37. Cultural Immersion as a Strategy for Empowerment.
- Author
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Charles JP
- Subjects
- Georgia, Humans, Republic of Korea, Students, Nursing, Cultural Competency, Education, Nursing, Baccalaureate, International Educational Exchange, Models, Educational, Power, Psychological
- Abstract
Cultural immersion experiences offered through study abroad opportunities for nursing students have been increasing in recent years. Examining the impact of these experiences has largely focused on students and not on the faculty leading the experiences. It is important to understand the impact of these experiences on all participants. Exploring the literature on empowerment provides some clarity on the relationship between studying abroad and its impact on participants. Further research linking cultural immersion experiences with empowerment is needed to better understand this relationship and the possibilities of empowering both students and faculty engaged in these exciting opportunities.
- Published
- 2015
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38. Monitoring the dynamics of clonal tumour evolution in vivo using secreted luciferases.
- Author
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Charles JP, Fuchs J, Hefter M, Vischedyk JB, Kleint M, Vogiatzi F, Schäfer JA, Nist A, Timofeev O, Wanzel M, and Stiewe T
- Subjects
- Animals, Cell Line, Tumor, Cell Proliferation, HCT116 Cells, Humans, In Vitro Techniques, Mice, Microscopy, Fluorescence, Neoplasms metabolism, Clonal Evolution genetics, Genetic Vectors, Luciferases, Neoplasms genetics, RNA, Small Interfering genetics
- Abstract
Tumours are heterogeneous cell populations that undergo clonal evolution during tumour progression, metastasis and response to therapy. Short hairpin RNAs (shRNAs) generate stable loss-of-function phenotypes and are versatile experimental tools to explore the contribution of individual genetic alterations to clonal evolution. In these experiments tumour cells carrying shRNAs are commonly tracked with fluorescent reporters. While this works well for cell culture studies and leukaemia mouse models, fluorescent reporters are poorly suited for animals with solid tumours--the most common tumour types in cancer patients. Here we develop a toolkit that uses secreted luciferases to track the fate of two different shRNA-expressing tumour cell clones competitively, both in vitro and in vivo. We demonstrate that secreted luciferase activities can be measured robustly in the blood stream of tumour-bearing mice to accurately quantify, in a minimally invasive manner, the dynamic evolution of two genetically distinct tumour subclones in preclinical mouse models of tumour development, metastasis and therapy.
- Published
- 2014
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39. Prediction of severe disease in children with diarrhea in a resource-limited setting.
- Author
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Levine AC, Munyaneza RM, Glavis-Bloom J, Redditt V, Cockrell HC, Kalimba B, Kabemba V, Musavuli J, Gakwerere M, Umurungi JP, Shah SP, and Drobac PC
- Subjects
- Body Weight, Child, Child, Preschool, Female, Humans, Infant, Male, ROC Curve, Rwanda epidemiology, Diarrhea epidemiology, Health Resources
- Abstract
Objective: To investigate the accuracy of three clinical scales for predicting severe disease (severe dehydration or death) in children with diarrhea in a resource-limited setting., Methods: Participants included 178 children admitted to three Rwandan hospitals with diarrhea. A local physician or nurse assessed each child on arrival using the World Health Organization (WHO) severe dehydration scale and the Centers for Disease Control (CDC) scale. Children were weighed on arrival and daily until they achieved a stable weight, with a 10% increase between admission weight and stable weight considered severe dehydration. The Clinical Dehydration Scale was then constructed post-hoc using the data collected for the other two scales. Receiver Operator Characteristic (ROC) curves were constructed for each scale compared to the composite outcome of severe dehydration or death., Results: The WHO severe dehydration scale, CDC scale, and Clinical Dehydration Scale had areas under the ROC curves (AUCs) of 0.72 (95% CI 0.60, 0.85), 0.73 (95% CI 0.62, 0.84), and 0.80 (95% CI 0.71, 0.89), respectively, in the full cohort. Only the Clinical Dehydration Scale was a significant predictor of severe disease when used in infants, with an AUC of 0.77 (95% CI 0.61, 0.93), and when used by nurses, with an AUC of 0.78 (95% CI 0.63, 0.93)., Conclusions: While all three scales were moderate predictors of severe disease in children with diarrhea, scale accuracy varied based on provider training and age of the child. Future research should focus on developing or validating clinical tools that can be used accurately by nurses and other less-skilled providers to assess all children with diarrhea in resource-limited settings.
- Published
- 2013
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40. Ligand-binding properties of a juvenile hormone receptor, Methoprene-tolerant.
- Author
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Charles JP, Iwema T, Epa VC, Takaki K, Rynes J, and Jindra M
- Subjects
- Animals, Base Sequence, Basic Helix-Loop-Helix Transcription Factors chemistry, Dimerization, Drosophila Proteins chemistry, Immunoprecipitation, Ligands, Methoprene metabolism, Molecular Sequence Data, Mutation genetics, Pyridines metabolism, RNA Interference, Real-Time Polymerase Chain Reaction, Sequence Analysis, DNA, Transcription Factors metabolism, Basic Helix-Loop-Helix Transcription Factors genetics, Basic Helix-Loop-Helix Transcription Factors metabolism, Drosophila genetics, Drosophila Proteins genetics, Drosophila Proteins metabolism, Models, Molecular, Sesquiterpenes metabolism, Signal Transduction physiology
- Abstract
Juvenile hormone (JH) is a sesquiterpenoid of vital importance for insect development, yet the molecular basis of JH signaling remains obscure, mainly because a bona fide JH receptor has not been identified. Mounting evidence points to the basic helix-loop-helix (bHLH)/Per-Arnt-Sim (PAS) domain protein Methoprene-tolerant (Met) as the best JH receptor candidate. However, details of how Met transduces the hormonal signal are missing. Here, we demonstrate that Met specifically binds JH III and its biologically active mimics, methoprene and pyriproxyfen, through its C-terminal PAS domain. Substitution of individual amino acids, predicted to form a ligand-binding pocket, with residues possessing bulkier side chains reduces JH III binding likely because of steric hindrance. Although a mutation that abolishes JH III binding does not affect a Met-Met complex that forms in the absence of methoprene, it prevents both the ligand-dependent dissociation of the Met-Met dimer and the ligand-dependent interaction of Met with its partner bHLH-PAS protein Taiman. These results show that Met can sense the JH signal through direct, specific binding, thus establishing a unique class of intracellular hormone receptors.
- Published
- 2011
- Full Text
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41. Life or death: p53-induced apoptosis requires DNA binding cooperativity.
- Author
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Schlereth K, Charles JP, Bretz AC, and Stiewe T
- Subjects
- Base Sequence, Binding Sites, Consensus Sequence, DNA genetics, Gene Expression Regulation, Humans, Molecular Sequence Data, Protein Binding, Protein Processing, Post-Translational, Apoptosis physiology, DNA metabolism, Tumor Suppressor Protein p53 metabolism
- Abstract
The tumor suppressor p53 provides exquisite protection from cancer by balancing cell survival and death in response to stress. Sustained stress or irreparable damage trigger p53's killer functions to permanently eliminate genetically-altered cells as a potential source of cancer. To prevent the unnecessary loss of cells that could cause premature aging as a result of stem cell attrition, the killer functions of p53 are tightly regulated and balanced against protector functions that promote damage repair and support survival in response to low stress or mild damage. In molecular terms these p53-based cell fate decisions involve protein interactions with cofactors and modifying enzymes, which modulate the activation of distinct sets of p53 target genes. In addition, we demonstrate that part of this regulation occurs at the level of DNA binding. We show that the killer function of p53 requires the four DNA binding domains within the p53 tetramer to interact with one another. These intermolecular interactions enable cooperative binding of p53 to less perfect response elements in the genome, which are present in many target genes essential for apoptosis. Modulating p53 interactions within the tetramer could therefore present a novel promising strategy to fine-tune p53-based cell fate decisions.
- Published
- 2010
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42. DNA binding cooperativity of p53 modulates the decision between cell-cycle arrest and apoptosis.
- Author
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Schlereth K, Beinoraviciute-Kellner R, Zeitlinger MK, Bretz AC, Sauer M, Charles JP, Vogiatzi F, Leich E, Samans B, Eilers M, Kisker C, Rosenwald A, and Stiewe T
- Subjects
- Apoptosis Regulatory Proteins genetics, Apoptosis Regulatory Proteins metabolism, Binding Sites, DNA Damage, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, HCT116 Cells, Humans, Models, Molecular, Mutagenesis, Site-Directed, Mutation, Protein Conformation, Time Factors, Transfection, Tumor Suppressor Protein p53 chemistry, Tumor Suppressor Protein p53 genetics, Apoptosis genetics, Cell Cycle genetics, Cell Proliferation, DNA metabolism, Promoter Regions, Genetic, Tumor Suppressor Protein p53 metabolism
- Abstract
p53 limits the proliferation of precancerous cells by inducing cell-cycle arrest or apoptosis. How the decision between survival and death is made at the level of p53 binding to target promoters remains unclear. Using cancer cell lines, we show that the cooperative nature of DNA binding extends the binding spectrum of p53 to degenerate response elements in proapoptotic genes. Mutational inactivation of cooperativity therefore does not compromise the cell-cycle arrest response but strongly reduces binding of p53 to multiple proapoptotic gene promoters (BAX, PUMA, NOXA, CASP1). Vice versa, engineered mutants with increased cooperativity show enhanced binding to proapoptotic genes, which shifts the cellular response to cell death. Furthermore, the cooperativity of DNA binding determines the extent of apoptosis in response to DNA damage. Because mutations, which impair cooperativity, are genetically linked to cancer susceptibility in patients, DNA binding cooperativity contributes to p53's tumor suppressor activity., (Copyright (c) 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
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43. The regulation of expression of insect cuticle protein genes.
- Author
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Charles JP
- Subjects
- Animals, Insect Proteins genetics, Insecta genetics, Transcription Factors metabolism, Ecdysteroids metabolism, Gene Expression Regulation, Developmental, Insect Proteins metabolism, Insecta metabolism
- Abstract
The exoskeleton of insects (cuticle) is an assembly of chitin and cuticle proteins. Its physical properties are determined largely by the proteins it contains, and vary widely with developmental stages and body regions. The genes encoding cuticle proteins are therefore good models to study the molecular mechanisms of signalling by ecdysteroids and juvenile hormones, which regulate molting and metamorphosis in insects. This review summarizes the studies of hormonal regulation of insect cuticle protein genes, and the recent progress in the analysis of the regulatory sequences and transcription factors important for their expression., ((c) 2009 Elsevier Ltd. All rights reserved.)
- Published
- 2010
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- View/download PDF
44. The cis-regulatory sequences required for expression of the Drosophila melanogaster adult cuticle gene ACP65A.
- Author
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Lestradet M, Gervasio E, Fraichard S, Dupas S, Alabouvette J, Lemoine A, and Charles JP
- Subjects
- Animals, Base Sequence, Insect Proteins genetics, Molecular Sequence Data, Phylogeny, Regulatory Elements, Transcriptional, Regulatory Sequences, Nucleic Acid, Drosophila melanogaster physiology, Gene Expression Regulation physiology, Insect Proteins metabolism
- Abstract
Post-embryonic development in insects requires successive molts. Molts are triggered by ecdysteroids, and the nature of the molt (larval, pupal or adult) is determined by juvenile hormones. The genes encoding cuticle proteins are targets of both classes of hormones, and therefore are interesting models to study hormone action at the molecular level. The Drosophila ACP65A cuticle gene is expressed exclusively during the synthesis of the adult exoskeleton, in epidermal domains synthesising flexible cuticle. We have examined the cis-regulatory sequences of ACP65A using phylogenetic comparisons and functional analysis, and find that only about 180 bp are essential, including an 81 bp intron. The restriction of ACP65A expression appears to depend on a strong repression mechanism.
- Published
- 2009
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- View/download PDF
45. Elucidation of the regulation of an adult cuticle gene Acp65A by the transcription factor Broad.
- Author
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Cui HY, Lestradet M, Bruey-Sedano N, Charles JP, and Riddiford LM
- Subjects
- Animals, Base Sequence, Binding Sites, Drosophila Proteins genetics, Hot Temperature, Insect Proteins genetics, Integumentary System growth & development, Molecular Sequence Data, Promoter Regions, Genetic, Protein Binding, Pupa, Transcription Factors genetics, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Drosophila melanogaster metabolism, Gene Expression Regulation, Developmental physiology, Insect Proteins metabolism, Transcription Factors metabolism
- Abstract
Broad (BR), an ecdysone-inducible transcription factor, is a major determinant of the pupal stage. The misexpression of BR-Z1 isoform (BR-Z1) during adult development of Drosophila melanogaster prevents the expression of the adult cuticle protein 65A gene (Acp65A). We found that the proximal 237 bp of the 5' flanking region of Acp65A were sufficient to mediate this suppression. A targeted point mutation of a putative BR-Z1 response element (BRE) within this region showed that it was not involved. Drosophila hormone receptor-like 38 (DHR38) is required for Acp65A expression. We found that BR-Z1 repressed DHR38 expression and that BR's inhibition of Acp65A expression was rescued by exogenous expression of DHR38. Thus, BR-Z1 suppresses Acp65A expression by preventing the normal up-regulation of DHR38 at the time of adult cuticle formation.
- Published
- 2009
- Full Text
- View/download PDF
46. Visual illusions based on single-field contrast asynchronies.
- Author
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Shapiro AG, Charles JP, and Shear-Heyman M
- Subjects
- Adult, Color, Humans, Light, Photic Stimulation methods, Psychometrics, Sensory Thresholds, Time Factors, Visual Perception, Contrast Sensitivity, Illusions etiology
- Abstract
A single-field contrast asynchrony refers to a stimulus configuration in which there is a single temporally modulated field and multiple sources of contrast information; the sources of contrast information modulate at different temporal phases or at different temporal frequencies. In this paper we show how single-field contrast asynchronies can lead to a wide variety of visual illusions. We investigate, in depth, the window shade/rocking disk configuration, in which a temporally modulated disk is surrounded by a split annulus (i.e., the top half is dark, and the bottom half is light). When the annulus is thick, the disk appears spatially inhomogeneous (shading); when the annulus is thin, the disk appears to rock back and forth (shifting). We measure the proportion of trials that a disk appears to shade or, on separate trials, appears to shift as a function of modulation amplitude, surround thickness, temporal frequency, and disk size. We account for the shading effects by postulating a combination of separate first- and second-order responses and/or a multi-scale spatial filtering process. We account for the shifting effects by examining four elemental motion conditions. For luminance modulation, the direction of the shift follows the same pattern as that produced by the rectified output of an array of spatial center-surround filters applied to the X, t plot. For equiluminant modulation, the direction of the shifts is consistent with a sequence-tracking (or third-order) motion response.
- Published
- 2005
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47. The Drosophila ACP65A cuticle gene: deletion scanning analysis of cis-regulatory sequences and regulation by DHR38.
- Author
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Bruey-Sedano N, Alabouvette J, Lestradet M, Hong L, Girard A, Gervasio E, Quennedey B, and Charles JP
- Subjects
- Animals, Animals, Genetically Modified, Base Sequence, Crosses, Genetic, Drosophila Proteins metabolism, Drosophila Proteins physiology, Female, Insect Proteins metabolism, Male, Nuclear Receptor Subfamily 4, Group A, Member 1, Pupa genetics, Receptors, Steroid physiology, Sequence Deletion, Transcription, Genetic, DNA-Binding Proteins physiology, Drosophila genetics, Drosophila Proteins genetics, Gene Expression Regulation physiology, Insect Proteins genetics, Receptors, Cytoplasmic and Nuclear physiology, Transcription Factors physiology
- Abstract
The regulatory sequences of the Drosophila ACP65A cuticle gene were analyzed in vivo in transgenic flies, using both fusion genes constructs and transposase-mediated deletions within a P element containing ACP65A regulatory sequences fused to the lacZ gene (deletion scanning). The sequences located between -594 and +161 are sufficient to confer both temporal and spatial expression specificities, indicating the presence of tissue-specific enhancers and response elements to hormone-induced factors. In addition, timing of expression and tissue-specificity appear to be controlled by distinct cis-regulatory elements, which suggests the existence of independent hormonal and tissue-specific signaling pathways. Gain and loss of function studies also implicate DHR38, the Drosophila homolog of the vertebrate NGFI-B-type nuclear receptors, as an important activator of the ACP65A gene., ((c) 2005 Wiley-Liss, Inc.)
- Published
- 2005
- Full Text
- View/download PDF
48. The ecdysone-induced DHR4 orphan nuclear receptor coordinates growth and maturation in Drosophila.
- Author
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King-Jones K, Charles JP, Lam G, and Thummel CS
- Subjects
- Animals, Drosophila genetics, Drosophila Proteins genetics, Gene Expression Regulation, Developmental physiology, Larva growth & development, Metamorphosis, Biological physiology, Mutation, Neurosecretory Systems metabolism, Pupa physiology, Receptors, Cytoplasmic and Nuclear genetics, Drosophila growth & development, Drosophila Proteins metabolism, Ecdysone metabolism, Receptors, Cytoplasmic and Nuclear metabolism
- Abstract
A critical determinant of insect body size is the time at which the larva stops feeding and initiates wandering in preparation for metamorphosis. No genes have been identified that regulate growth by contributing to this key developmental decision to terminate feeding. We show here that mutations in the DHR4 orphan nuclear receptor result in larvae that precociously leave the food to form premature prepupae, resulting in abbreviated larval development that translates directly into smaller and lighter animals. In addition, we show that DHR4 plays a central role in the genetic cascades triggered by the steroid hormone ecdysone at the onset of metamorphosis, acting as both a repressor of the early ecdysone-induced regulatory genes and an inducer of the betaFTZ-F1 midprepupal competence factor. We propose that DHR4 coordinates growth and maturation in Drosophila by mediating endocrine responses to the attainment of critical weight during larval development.
- Published
- 2005
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49. Induced contrast asynchronies.
- Author
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Shapiro AG, D'Antona AD, Charles JP, Belano LA, Smith JB, and Shear-Heyman M
- Subjects
- Adult, Female, Humans, Light, Male, Contrast Sensitivity physiology, Illusions physiology, Pattern Recognition, Visual physiology
- Abstract
We document a new type of perceptual effect in which asynchronous contrast signals are presented simultaneously with synchronous luminance signals. The template for the basic effect consists of two physically identical disks (.75-deg diameter, 40 cd/m2), one surrounded by a dark annulus (1.5 deg, 20 cd/m2) and the other by a light annulus (1.5 deg, 60 cd/m2). The center disks are modulated in time, with a maximum luminance of 55 cd/m2 and a minimum luminance of 25 cd/m2. With this stimulus configuration, the luminance signals of the disks modulate in phase with each other while the contrast signals relative to the surrounds modulate in anti-phase. Observers can track the contrast and luminance signals when the luminance is modulated at 1 Hz but perceive primarily the contrast signal at 2-6 Hz. We show that the asynchrony can be perceived with a thin annular surround, that the appearance of the asynchrony is dependent on the modulation amplitude, and that a decrease in the relative strength of the asynchrony at 1 Hz corresponds to the band-pass shape of the temporal contrast sensitivity function in the presence of light and dark edges. We also introduce variations of the induced contrast asynchrony principle in which a single modulated disk is surrounded by a half-light and half-dark split annulus; we refer to these configurations as the window-shade and rocking-disk illusions.
- Published
- 2004
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50. Induced contrast asynchronies may be useful for luminance photometry.
- Author
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Shapiro AG, D'Antona A, Smith JB, Belano LA, and Charles JP
- Subjects
- Adult, Humans, Light, Lighting, Photic Stimulation, Photometry methods, Color Perception physiology, Contrast Sensitivity physiology
- Abstract
Shapiro et al. (2004) introduced a new visual effect (the induced contrast asynchrony) that demonstrates a perceptual separation between the response to a modulated light and the response to contrast of the light relative to background. The effect is composed of two physically identical disks, one surrounded by a dark annulus and the other by a light annulus. The luminance levels of both central disks were modulated in time, producing a stimulus with in-phase luminance modulation and antiphase contrast modulation. Observers primarily perceived the disks to be modulating asynchronously (i.e. they perceived the contrast), but at low temporal frequencies could also track the luminance level. Here we document that the induced contrast asynchrony disappears when the surrounds are achromatic and the center lights are modulated near the equiluminant axis. Observers viewed 1-deg-diameter disks embedded 2-deg-diameter achromatic surrounds. The chromaticity of the disks was modulated in time (1 Hz) along lines in an S versus Luminance cardinal color plane and an L-M versus Luminance cardinal color plane; observers responded as to whether the modulation appeared in phase. For all observers and both color planes, the lights appeared in phase most frequently at angles near the standard observer's equiluminant line and out of phase at angles further away from that line. Observers differed in the range of angles that produce the appearance of in-phase modulation. The results suggest that induced contrast asynchronies may be useful as a technique for equating luminance of disparate lights.
- Published
- 2004
- Full Text
- View/download PDF
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