60 results on '"Chan FT"'
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2. Not out of the woods yet: signatures of the prolonged negative genetic consequences of a population bottleneck in a rapidly re-expanding wader, the black-faced spoonbill Platalea minor
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Li, Shou-Hsien, primary, Liu, Yang, additional, Yeh, Chia-Fen, additional, Fu, Yuchen, additional, Yeung, Carol K. L., additional, Lee, Chun-cheng, additional, Chiu, Chi-Cheng, additional, Kuo, Tung Hui, additional, Chan, FT, additional, Chen, Yu-Chia, additional, Ko, Wen-ya, additional, and Yao, Chen-te, additional
- Published
- 2021
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3. Application of metamorphic testing in numerical analysis
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Chan, FT, Chen, TY, Cheung, Shing Chi, Lau, MF, Yiu, SM, Chan, FT, Chen, TY, Cheung, Shing Chi, Lau, MF, and Yiu, SM
- Published
- 1998
4. Trends in the detection of aquatic non-indigenous species across global marine, estuarine and freshwater ecosystems: A 50-year perspective
- Author
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Bailey, SA, Brown, L, Campbell, ML, Canning-Clode, J, Carlton, JT, Castro, N, Chainho, P, Chan, FT, Creed, JC, Curd, A, Darling, J, Fofonoff, P, Galil, BS, Hewitt, Chad, Inglis, GJ, Keith, I, Mandrak, NE, Marchini, A, McKenzie, CH, Occhipinti-Ambrogi, A, Ojaveer, H, Pires-Teixeira, LM, Robinson, TB, Ruiz, GM, Seaward, K, Schwindt, E, Son, MO, Therriault, TW, Zhan, A, and Hussey, N
- Published
- 2020
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5. New record of Carnidae (Diptera) from Taiwan and potential challenges in DNA barcode amplification due to pseudogene.
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Chen HP, Chan FT, Shiao SF, and Chiu MC
- Abstract
Background: The genus Carnus Nitzsch, 1818 comprises small ectoparasites that feed on the blood of juvenile avians. They are characterised by dealated adults with setose abdominal intersegmental membranes. Carnusorientalis Maa, 1968 was previously recorded in Malaysia and the Ryukyu Islands of Japan, parasitising two owl species: Ketupaketupu (Horsfield, 1821) and Otuselegans (Cassin, 1852). This study confirms the occurrence of C.orientalis in Taiwan and presents a new host record, along with COI barcode sequences. Additionally, the study also elucidates the difficulties posed by blood meal contamination and pseudogene amplification as confounding factors intrinsic to the molecular taxonomic delineation of C.orientalis via universal DNA barcoding primers., New Information: The following new information regarding C.orientalis is provided in this study: Carnusorientalis is first recorded in Taiwan, filling the gap in its East Asian distribution. This is also the first record of Carnidae from Taiwan. Otuslettia (Hodgson, 1836) (Aves, Strigidae) is reported as a new host for C.orientalis , identified on a fallen fledgling.Co-amplification of the host's COI is reported in this study using the universal PCR primer set LCO1490/HCO2198. Additionally, the amplification of a COI -like pseudogene using a newly-designed primer set is detected through abnormal translated amino acid sequences and the occurrence of a stop codon.New specific primers for the COI gene of Carnus were designed in this study. The new distribution and ecological data of C.orientalis enhance our understanding of this species. The provision of new COI primers is anticipated to contribute to future studies employing DNA barcoding in bird-parasitic flies., (Hsuan-Pu Chen, Fang-Tse Chan, Shiuh-Feng Shiao, Ming-Chung Chiu.)
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- 2024
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6. Machine Learning on Ultrasound Texture Analysis Data for Characterizing of Salivary Glandular Tumors: A Feasibility Study.
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Liao LJ, Cheng PC, and Chan FT
- Abstract
Background: Objective quantitative texture characteristics may be helpful in salivary glandular tumor differential diagnosis. This study uses machine learning (ML) to explore and validate the performance of ultrasound (US) texture features in diagnosing salivary glandular tumors., Material and Methods: 122 patients with salivary glandular tumors, including 71 benign and 51 malignant tumors, are enrolled. Representative brightness mode US pictures are selected for further Gray Level Co-occurrence Matrix (GLCM) texture analysis. We use a t -test to test the significance and use the receiver operating characteristic curve method to find the optimal cut-point for these significant features. After splitting 80% of the data into a training set and 20% data into a testing set, we use five machine learning models, k-nearest Neighbors (kNN), Naïve Bayes, Logistic regression, Artificial Neural Networks (ANNs) and supportive vector machine (SVM), to explore and validate the performance of US GLCM texture features in diagnosing salivary glandular tumors., Results: This study includes 49 female and 73 male patients, with a mean age of 53 years old, ranging from 21 to 93. We find that six GLCM texture features (contrast, inverse difference movement, entropy, dissimilarity, inverse difference and difference entropy) are significantly different between benign and malignant tumors ( p < 0.05). In ML, the overall accuracy rates are 74.3% (95%CI: 59.8-88.8%), 94.3% (86.6-100%), 72% (54-89%), 84% (69.5-97.3%) and 73.5% (58.7-88.4%) for kNN, Naïve Bayes, Logistic regression, a one-node ANN and SVM, respectively., Conclusions: US texture analysis with ML has potential as an objective and valuable tool to make a differential diagnosis between benign and malignant salivary gland tumors.
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- 2024
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7. The Epidemiological Analysis of COVID-19 Outbreaks in Nursing Homes during the Period of Omicron Variant Predominance.
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Tsai JC, Chang YY, Hsu CY, Chen HJ, Chan FT, and Shi ZY
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Background: The main purpose of this study was to evaluate the epidemic trend and risk factors associated with COVID-19 outbreaks in nursing homes during the period of Omicron variant predominance., Methods: The study analyzed the risk factors associated with SARS-CoV-2 infection and death among the 327 residents and 129 healthcare workers (HCWs) in three hospital-affiliated nursing homes through a multivariate Cox regression model., Results: The rates of receiving a COVID-19 booster dose were 70.3% for the residents and 93.0% for the healthcare workers (HCWs), respectively. A number of asymptomatic individuals, including 54 (16.5%) residents and 15 (11.6%) HCWs, were detected through mass screening surveillance tests. The COVID-19 infection rates during the outbreaks were 41.6% among residents and 48.1% among HCWs, respectively. The case fatality rate among residents was 10.3%. None of the HCWs were hospitalized or died. The multivariate Cox regression model showed that the risk of COVID-19 infection increased in males (HR 2.46; 95% CI 1.47-4.11; p = 0.001), Barthel index ≥ 61 (HR 1.93; 95% CI 1.18-3.17; p = 0.009), and dementia (HR 1.61; 95% CI 1.14-2.27; p = 0.007). The risk of COVID-19 death increased with pneumonia (HR 11.03; 95% CI 3.02-40.31; p < 0.001), hospitalization (HR 7.18; 95% CI 1.97-26.25; p = 0.003), and admission to an intensive care unit (HR 8.67; 95% CI 2.79-26.89; p < 0.001)., Conclusions: This study highlighted the high infection rates with a substantial proportion of asymptomatic infections for both residents and HCWs, as well as a high case fatality rate for the residents among nursing homes during the Omicron epidemic period. We suggest implementing mass screening through regular surveillance testing as an effective strategy for early detection of COVID-19 and for preventing transmission during an epidemic period. Pneumonia is the primary risk associated with COVID-19 death. Early detection and prompt treatment of pneumonia for vulnerable residents in nursing homes are crucial to protect them from potential mortality.
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- 2023
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8. The First Nationwide Surveillance of Severe Fever with Thrombocytopenia Syndrome in Ruminants and Wildlife in Taiwan.
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Kuan CY, Lin TL, Ou SC, Chuang ST, Chan JP, Maeda K, Mizutani T, Wu MP, Lee F, Chan FT, Chang CC, Liang RL, Yang SF, Liu TC, Tu WC, Tzeng HY, Lee CJ, Lin CF, Lee HH, Wu JH, Lo HC, Tseng KC, Hsu WL, and Chou CC
- Subjects
- Female, Humans, Animals, Cattle, Sheep, Taiwan epidemiology, Ruminants, Goats, Pakistan, RNA, Viral genetics, Animals, Wild, Severe Fever with Thrombocytopenia Syndrome
- Abstract
Since the first discovery of severe fever with thrombocytopenia syndrome virus (SFTSV) in China in 2009, SFTSV has rapidly spread through other Asian countries, including Japan, Korea, Vietnam and Pakistan, in chronological order. Taiwan reported its first discovery of SFTSV in sheep and humans in 2020. However, the prevalence of SFTSV in domestic and wildlife animals and the geographic distribution of the virus within the island remain unknown. A total of 1324 animal samples, including 803 domestic ruminants, 521 wildlife animals and 47 tick pools, were collected from March 2021 to December 2022 from 12 counties and one terrestrial island. The viral RNA was detected by a one-step real-time reverse transcription polymerase chain reaction (RT-PCR). Overall, 29.9% (240/803) of ruminants showed positive SFTSV RNA. Sheep had the highest viral RNA prevalence of 60% (30/50), followed by beef cattle at 28.4% (44/155), goats at 28.3% (47/166), and dairy cows at 27.5% (119/432). The bovine as a total of dairy cow and beef cattle was 27.8% (163/587). The viral RNA prevalence in ticks (predominantly Rhipicephalus microplus ) was similar to those of ruminants at 27.7% (13/47), but wild animals exhibited a much lower prevalence at 1.3% (7/521). Geographically the distribution of positivity was quite even, being 33%, 29.1%, 27.5% and 37.5% for northern, central, southern and eastern Taiwan, respectively. Statistically, the positive rate of beef cattle in the central region (55.6%) and dairy cattle in the eastern region (40.6%) were significantly higher than the other regions; and the prevalence in Autumn (September-November) was significantly higher than in the other seasons ( p < 0.001). The nationwide study herein revealed for the first time the wide distribution and high prevalence of SFTSV in both domestic animals and ticks in Taiwan. Considering the high mortality rate in humans, surveillance of other animal species, particularly those in close contact with humans, and instigation of protective measures for farmers, veterinarians, and especially older populations visiting or living near farms or rural areas should be prioritized.
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- 2023
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9. Morphometric Relationships, Growth and Condition Factors of Critically Endangered Chinese Pangolin ( Manis pentadactyla ).
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Suwal TL, Chi MJ, Tsai CF, Chan FT, Lin KH, and Pei KJ
- Abstract
Morphometric relationships and condition factors are crucial to quickly understanding the fitness and well-being of animals. Total length (cm) and bodyweight (g) of 282 (male = 167 and female = 115) pangolins were accounted for in this study which was received and rehabilitated in Pingtung Rescued Center, Pingtung and Endemic Species Research Institute, Nantou, Taiwan. The allometric equation; W = aLb was used to estimate the length-weight relationships where R2 = 0.70, a = 0.61, and b = 1.98. The ratio of total body length and tail length was between 1.1 and 2.7. Pangolins exhibited negative allometric growth (b < 3) as their length increased. The average relative condition factor (KR) was 1.04, indicating a state of good health for rescued individuals. However, Fulton condition factor (KF) and KR fluctuated in different months but was significantly heavier during the wet seasons. This study recommended to release healthy animals with KF of 0.8 or higher back into the wild in order to increase their survival rate. The study, thus will be helpful to promote standardized guidelines for conducting physical measurements and understanding health status. Additionally, it will support the recovery of this threatened species by husbandry and diet management in ex-situ and in-situ conservation.
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- 2022
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10. Not out of the woods yet: Signatures of the prolonged negative genetic consequences of a population bottleneck in a rapidly re-expanding wader, the black-faced spoonbill Platalea minor.
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Li SH, Liu Y, Yeh CF, Fu Y, Yeung CKL, Lee CC, Chiu CC, Kuo TH, Chan FT, Chen YC, Ko WY, and Yao CT
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- Animals, Genetic Variation, Genome, Inbreeding, Population Density, Birds genetics, Endangered Species
- Abstract
The long-term persistence of a population which has suffered a bottleneck partly depends on how historical demographic dynamics impacted its genetic diversity and the accumulation of deleterious mutations. Here we provide genomic evidence for the genetic effect of a recent population bottleneck in the endangered black-faced spoonbill (Platalea minor) after its rapid population recovery. Our data suggest that the bird's effective population size, N
e , had been relatively stable (7500-9000) since 22,000 years ago; however, a recent brief yet severe bottleneck (Ne = 20) which we here estimated to occur around the 1940s wiped out >99% of its historical Ne in roughly three generations. Despite a >15-fold population recovery since 1988, we found that black-faced spoonbill population has higher levels of inbreeding (7.4 times more runs of homozygosity) than its sister species, the royal spoonbill (P. regia), which is not thought to have undergone a marked population contraction. Although the two spoonbills have similar levels of genome-wide genetic diversity, our results suggest that selection on more genes was relaxed in the black-faced spoonbill; moreover individual black-faced spoonbills carry more putatively deleterious mutations (Grantham's score > 50), and may therefore express more deleterious phenotypic effects than royal spoonbills. Here we demonstrate the value of using genomic indices to monitor levels of genetic erosion, inbreeding and mutation load in species with conservation concerns. To mitigate the prolonged negative genetic effect of a population bottleneck, we recommend that all possible measures should be employed to maintain population growth of a threatened species., (© 2021 John Wiley & Sons Ltd.)- Published
- 2022
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11. Canine Parvovirus Infections in Taiwanese Pangolins ( Manis pentadactyla pentadactyla ).
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Chang YC, Lin ZY, Lin YX, Lin KH, Chan FT, Hsiao ST, Liao JW, and Chiou HY
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- Animals, Animals, Wild, Dogs, Leukocyte Count veterinary, Pangolins, Phylogeny, Dog Diseases, Parvoviridae Infections veterinary, Parvovirus, Canine
- Abstract
Canine parvovirus type 2 (CPV-2) is among the most important and highly contagious pathogens that cause enteric or systemic infections in domestic and nondomestic carnivores. However, the spillover of CPV-2 to noncarnivores is rarely mentioned. Taiwanese pangolins ( Manis pentadactyla pentadactyla ) are threatened due to habitat fragmentation and prevalent animal trafficking. Interactions between Taiwanese pangolins, humans, and domestic animals have become more frequent in recent years. However, information about the susceptibility of pangolins to common infectious agents of domestic animals has been lacking. From October 2017 to June 2019, 4 pangolins that were rescued and treated in wildlife rescue centers in central and northern Taiwan presented with gastrointestinal signs. Gross and histopathological examination revealed the main pathologic changes to be necrotic enteritis with involvement of the crypts in all intestinal segments in 2 pangolins. By immunohistochemistry for CPV-2, there was positive labeling of cryptal epithelium throughout the intestine, and immunolabeling was also present in epidermal cells adjacent to a surgical amputation site, and in mononuclear cells in lymphoid tissue. The other 2 pangolins had mild enteritis without crypt involvement, and no immunolabeling was detected. The nucleic acid sequences of polymerase chain reaction (PCR) amplicons from these 4 pangolins were identical to a Chinese CPV-2c strain from domestic dogs. Quantitative PCR revealed a higher ratio of CPV-2 nucleic acid to internal control gene in the 2 pangolins with severe intestinal lesions and positive immunoreactivity. Herein, we present evidence of CPV-2 infections in pangolins.
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- 2021
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12. Trends in the detection of aquatic non-indigenous species across global marine, estuarine and freshwater ecosystems: A 50-year perspective.
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Bailey SA, Brown L, Campbell ML, Canning-Clode J, Carlton JT, Castro N, Chinho P, Chan FT, Creed JC, Curd A, Darling J, Fofonoff P, Galil BS, Hewitt CL, Inglis GJ, Keith I, Mandrak NE, Marchini A, McKenzie CH, Occhipinti-Ambrogi A, Ojaveer H, Pires-Teixeira LM, Robinson TB, Ruiz GM, Seaward K, Schwindt E, Son MO, Therriault TW, and Zhan A
- Abstract
Aim: The introduction of aquatic non-indigenous species (ANS) has become a major driver for global changes in species biogeography. We examined spatial patterns and temporal trends of ANS detections since 1965 to inform conservation policy and management., Location: Global., Methods: We assembled an extensive dataset of first records of detection of ANS (1965-2015) across 49 aquatic ecosystems, including the (a) year of first collection, (b) population status and (c) potential pathway(s) of introduction. Data were analysed at global and regional levels to assess patterns of detection rate, richness and transport pathways., Results: An annual mean of 43 (±16 SD ) primary detections of ANS occurred-one new detection every 8.4 days for 50 years. The global rate of detections was relatively stable during 1965-1995, but increased rapidly after this time, peaking at roughly 66 primary detections per year during 2005-2010 and then declining marginally. Detection rates were variable within and across regions through time. Arthropods, molluscs and fishes were the most frequently reported ANS. Most ANS were likely introduced as stowaways in ships' ballast water or biofouling, although direct evidence is typically absent., Main Conclusions: This synthesis highlights the magnitude of recent ANS detections, yet almost certainly represents an underestimate as many ANS go unreported due to limited search effort and diminishing taxonomic expertise. Temporal rates of detection are also confounded by reporting lags, likely contributing to the lower detection rate observed in recent years. There is a critical need to implement standardized, repeated methods across regions and taxa to improve the quality of global-scale comparisons and sustain core measures over longer time-scales. It will be fundamental to fill in knowledge gaps given that invasion data representing broad regions of the world's oceans are not yet readily available and to maintain knowledge pipelines for adaptive management.
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- 2020
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13. Frequent detection of anticoagulant rodenticides in raptors sampled in Taiwan reflects government rodent control policy.
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Hong SY, Morrissey C, Lin HS, Lin KS, Lin WL, Yao CT, Lin TE, Chan FT, and Sun YH
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- 4-Hydroxycoumarins metabolism, Animals, Rodent Control, Rodenticides analysis, Taiwan, Anticoagulants metabolism, Environmental Monitoring, Environmental Pollutants metabolism, Raptors metabolism, Rodenticides metabolism
- Abstract
Anticoagulant rodenticides (ARs) are known to cause extensive secondary exposure in top predators in Europe and North America, but there remains a paucity of data in Asia. In this study, we collected 221 liver samples from 21 raptor species in Taiwan between 2010 and 2018. Most birds were recovered from rescue organizations, but some free-ranging individuals were obtained from bird-strike prevention measures at airports. ARs were detected in 10 species and more than half of the total samples. Common rodent-eating Black-winged Kites (Elanus caeruleus) had the highest prevalence (89.2%) and highest average sum concentration (0.211 ± 0.219 mg/kg), which was similar between free-ranging birds at airports and injured birds from rescue organizations. Scavenging Black Kites (Milvus migrans) and snake-eating Crested Serpent-eagles (Spilornis cheela) had the second highest prevalence or sum concentration, respectively. Seven different AR compounds were detected, of which brodifacoum was the most common and had the highest average concentration, followed by flocoumafen and bromadiolone. The frequency of occurrence in the three most numerous species (Black-winged Kite, Crested Goshawk [Accipiter trivirgatus], and Collared Scops-owl [Otus lettia]) was significantly higher in autumn than summer, which is consistent with the timing of the Taiwanese government's supply of free ARs to farmers. Regional differences in the detection of individual compounds also tended to reflect differences in human population density and use patterns (in agriculture or urban-dominated environments). Clinical poisoning was confirmed in Black Kites with sum concentrations as low as 0.026 mg/kg; however, further study of interspecific differences in AR sensitivity and potential population effects are needed. In addition, continued monitoring remains important given the Taiwanese government has modified their farmland rodent control policy to gradually reduce free AR supplies since 2015., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2019
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14. Climate change opens new frontiers for marine species in the Arctic: Current trends and future invasion risks.
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Chan FT, Stanislawczyk K, Sneekes AC, Dvoretsky A, Gollasch S, Minchin D, David M, Jelmert A, Albretsen J, and Bailey SA
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- Animals, Arctic Regions, Biodiversity, Ecosystem, Introduced Species statistics & numerical data, Risk, Aquatic Organisms physiology, Climate Change, Introduced Species trends
- Abstract
Climate change and increased anthropogenic activities are expected to elevate the potential of introducing nonindigenous species (NIS) into the Arctic. Yet, the knowledge base needed to identify gaps and priorities for NIS research and management is limited. Here, we reviewed primary introduction events to each ecoregion of the marine Arctic realm to identify temporal and spatial patterns, likely source regions of NIS, and the putative introduction pathways. We included 54 introduction events representing 34 unique NIS. The rate of NIS discovery ranged from zero to four species per year between 1960 and 2015. The Iceland Shelf had the greatest number of introduction events (n = 14), followed by the Barents Sea (n = 11), and the Norwegian Sea (n = 11). Sixteen of the 54 introduction records had no known origins. The majority of those with known source regions were attributed to the Northeast Atlantic and the Northwest Pacific, 19 and 14 records, respectively. Some introduction events were attributed to multiple possible pathways. For these introductions, vessels transferred the greatest number of aquatic NIS (39%) to the Arctic, followed by natural spread (30%) and aquaculture activities (25%). Similar trends were found for introductions attributed to a single pathway. The phyla Arthropoda and Ochrophyta had the highest number of recorded introduction events, with 19 and 12 records, respectively. Recommendations including vector management, horizon scanning, early detection, rapid response, and a pan-Arctic biodiversity inventory are considered in this paper. Our study provides a comprehensive record of primary introductions of NIS for marine environments in the circumpolar Arctic and identifies knowledge gaps and opportunities for NIS research and management. Ecosystems worldwide will face dramatic changes in the coming decades due to global change. Our findings contribute to the knowledge base needed to address two aspects of global change-invasive species and climate change., (© 2018 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.)
- Published
- 2019
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15. Is salinity an obstacle for biological invasions?
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Paiva F, Barco A, Chen Y, Mirzajani A, Chan FT, Lauringson V, Baltazar-Soares M, Zhan A, Bailey SA, Javidpour J, and Briski E
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- Animals, Arthropod Proteins genetics, Canada, Electron Transport Complex IV genetics, Europe, Evolution, Molecular, Mitochondrial Proteins genetics, United States, Amphipoda physiology, Biological Evolution, Introduced Species, Salt Tolerance
- Abstract
Invasions of freshwater habitats by marine and brackish species have become more frequent in recent years with many of those species originating from the Ponto-Caspian region. Populations of Ponto-Caspian species have successfully established in the North and Baltic Seas and their adjoining rivers, as well as in the Great Lakes-St. Lawrence River region. To determine if Ponto-Caspian taxa more readily acclimatize to and colonize diverse salinity habitats than taxa from other regions, we conducted laboratory experiments on 22 populations of eight gammarid species native to the Ponto-Caspian, Northern European and Great Lakes-St. Lawrence River regions. In addition, we conducted a literature search to survey salinity ranges of these species worldwide. Finally, to explore evolutionary relationships among examined species and their populations, we sequenced the mitochondrial cytochrome c oxidase subunit I gene (COI) from individuals used for our experiments. Our study revealed that all tested populations tolerate wide ranges of salinity, however, different patterns arose among species from different regions. Ponto-Caspian taxa showed lower mortality in fresh water, while Northern European taxa showed lower mortality in fully marine conditions. Genetic analyses showed evolutionary divergence among species from different regions. Due to the geological history of the two regions, as well as high tolerance of Ponto-Caspian species to fresh water, whereas Northern European species are more tolerant of fully marine conditions, we suggest that species originating from the Ponto-Caspian and Northern European regions may be adapted to freshwater and marine environments, respectively. Consequently, the perception that Ponto-Caspian species are more successful colonizers might be biased by the fact that areas with highest introduction frequency of NIS (i.e., shipping ports) are environmentally variable habitats which often include freshwater conditions that cannot be tolerated by euryhaline taxa of marine origin., (© 2018 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.)
- Published
- 2018
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16. Drug treatment effects on outcomes in heart failure with preserved ejection fraction: a systematic review and meta-analysis.
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Zheng SL, Chan FT, Nabeebaccus AA, Shah AM, McDonagh T, Okonko DO, and Ayis S
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- Biomarkers blood, Cardiovascular Agents adverse effects, Disease Progression, Heart Failure blood, Heart Failure mortality, Heart Failure physiopathology, Heart Ventricles metabolism, Heart Ventricles physiopathology, Humans, Recovery of Function, Risk Factors, Treatment Outcome, Cardiovascular Agents therapeutic use, Heart Failure drug therapy, Heart Ventricles drug effects, Stroke Volume drug effects, Ventricular Function, Left drug effects
- Abstract
Background: Clinical drug trials in patients with heart failure and preserved ejection fraction have failed to demonstrate improvements in mortality., Methods: We systematically searched Medline, Embase and the Cochrane Central Register of Controlled Trials for randomised controlled trials (RCT) assessing pharmacological treatments in patients with heart failure with left ventricular (LV) ejection fraction≥40% from January 1996 to May 2016. The primary efficacy outcome was all-cause mortality. Secondary outcomes were cardiovascular mortality, heart failure hospitalisation, exercise capacity (6-min walk distance, exercise duration, VO
2 max), quality of life and biomarkers (B-type natriuretic peptide, N-terminal pro-B-type natriuretic peptide). Random-effects models were used to estimate pooled relative risks (RR) for the binary outcomes, and weighted mean differences for continuous outcomes, with 95% CI., Results: We included data from 25 RCTs comprising data for 18101 patients. All-cause mortality was reduced with beta-blocker therapy compared with placebo (RR: 0.78, 95%CI 0.65 to 0.94, p=0.008). There was no effect seen with ACE inhibitors, aldosterone receptor blockers, mineralocorticoid receptor antagonists and other drug classes, compared with placebo. Similar results were observed for cardiovascular mortality. No single drug class reduced heart failure hospitalisation compared with placebo., Conclusion: The efficacy of treatments in patients with heart failure and an LV ejection fraction≥40% differ depending on the type of therapy, with beta-blockers demonstrating reductions in all-cause and cardiovascular mortality. Further trials are warranted to confirm treatment effects of beta-blockers in this patient group., Competing Interests: Competing interests: None declared., (© Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.)- Published
- 2018
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17. Beyond propagule pressure: importance of selection during the transport stage of biological invasions.
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Briski E, Chan FT, Darling JA, Lauringson V, MacIsaac HJ, Zhan A, and Bailey SA
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Biological invasions are largely considered to be a "numbers game", wherein the larger the introduction effort, the greater the probability that an introduced population will become established. However, conditions during transport - an early stage of the invasion - can be particularly harsh, thereby greatly reducing the size of a population available to establish in a new region. Some successful non-indigenous species are more tolerant of environmental and anthropogenic stressors than related native species, possibly stemming from selection (ie survival of only pre-adapted individuals for particular environmental conditions) during the invasion process. By reviewing current literature concerning population genetics and consequences of selection on population fitness, we propose that selection acting on transported populations can facilitate local adaptation, which may result in a greater likelihood of invasion than predicted by propagule pressure alone. Specifically, we suggest that detailed surveys should be conducted to determine interactions between molecular mechanisms and demographic factors, given that current management strategies may underestimate invasion risk.
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- 2018
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18. Metronomic oral cyclosphosphamide as third-line systemic treatment or beyond in patients with inoperable locoregionally advanced recurrent or metastatic nasopharyngeal carcinoma.
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Lee VHF, Kwong DLW, Lam KO, Lai YC, Li Y, Tong CC, Ho PPY, Chan WL, Wong LS, Leung DKC, Chan SY, Chan FT, Leung TW, and Lee AWM
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- Administration, Metronomic, Administration, Oral, Adult, Aged, Antineoplastic Agents, Alkylating economics, Carcinoma, Cyclophosphamide economics, Disease Progression, Disease-Free Survival, Female, Follow-Up Studies, Humans, Male, Middle Aged, Nasopharyngeal Carcinoma, Nasopharyngeal Neoplasms mortality, Nasopharyngeal Neoplasms pathology, Neoplasm Metastasis, Neoplasm Recurrence, Local mortality, Neoplasm Recurrence, Local pathology, Prospective Studies, Treatment Outcome, Young Adult, Antineoplastic Agents, Alkylating administration & dosage, Cyclophosphamide administration & dosage, Nasopharyngeal Neoplasms drug therapy, Neoplasm Recurrence, Local drug therapy
- Abstract
There is no standard third-line or further systemic treatment for patients with inoperable locoregionally advanced recurrent or metastatic nasopharyngeal carcinoma (NPC). Metronomic oral cyclophosphamide provides an acceptable and cheap option for these heavily pretreated patients who had limited choices. We conducted a prospective phase II single-arm open-label study of metronomic oral cyclophosphamide. Patients with locoregionally advanced recurrent inoperable (rT3/T4, rN2-N3b) or metastatic (rM1) NPC who had Eastern Cooperative Oncology Group (ECOG) performance status (PS) (0-2) and had progressed after at least 2 lines of palliative systemic chemotherapy were eligible. They received oral cyclophosphamide between 50 and 150 mg once daily until progressive disease or unacceptable toxicity. Objective response rate (ORR), disease control rate (DCR), biochemical response (two consecutive declines of plasma EBV DNA after treatment), progression-free survival (PFS), overall survival (OS), and safety profiles were evaluated. A total of 56 patients were recruited. Thirty-three, 13, 6, 3, and 1 patients received cyclophosphamide as 3rd, 4th, 5th, 6th, and 7th line of therapy respectively. After a median follow-up of 9.95 months (range 1.76-59.51 months), the ORR was 8.9% and the DCR was 57.1%. The median PFS and OS were 4.47 and 9.20 months, respectively. Those with PS 1 had longer median PFS (5.49 months) compared to those with PS 2 (3.75 months, P = .011). Besides, those who had locoregionally recurrent disease had better PFS (8.97 months, 95% CI, 0.53-17.41 months) compared to those who had distant metastases (4.14 months, 95% CI, 2.53-5.75 months, P = .020). Multivariable analysis revealed that PS 1 (vs 2) (P = .020) and locoregional recurrence (vs metastasis) (P = .029) were the only significant independent prognostic factors of PFS. Around 16 (28.6%) patients developed grade ≥3 adverse events, including malaise (5.4%), hematological (8.9%), gastrointestinal (3.6%), feverish (3.6%), and hemorrhagic (1.8%) events. The median cost of the whole drug treatment was 51.65 US dollars (USD) (range 4.15-142.75 USD) (1 USD = 7.8 HK dollars [HKD]). Metronomic oral cyclophosphamide is an acceptable third-line or beyond systemic therapy for locoregionally advanced recurrent or metastatic NPC with acceptable toxicity and limited financial burden.
- Published
- 2017
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19. Interstage somatic growth in children with hypoplastic left heart syndrome after initial palliation with the hybrid procedure.
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Chan FT, Bellsham-Revell HR, Duggan H, Simpson JM, Hulse T, and Bell AJ
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- Female, Follow-Up Studies, Humans, Hypoplastic Left Heart Syndrome surgery, Infant, Male, Postoperative Period, Retrospective Studies, Treatment Outcome, Child Development physiology, Fontan Procedure methods, Hypoplastic Left Heart Syndrome physiopathology, Norwood Procedures methods, Palliative Care
- Abstract
Introduction The hybrid procedure is one mode of initial palliation for hypoplastic left heart syndrome. Subsequently, patients proceed with either the "three-stage" pathway - comprehensive second stage followed by Fontan completion - or the "four-stage" pathway - Norwood procedure, hemi-Fontan, or Fontan completion. In this study, we describe somatic growth patterns observed in the hybrid groups and a comparison primary Norwood group., Methods: A retrospective analysis of patients who have undergone hybrid procedure and Fontan completion was performed. Weight-for-age and height-for-age z-scores were recorded at each operation., Results: We identified 13 hybrid patients - eight in the three-stage pathway and five in the four-stage pathway - and 49 Norwood patients. Weight: three stage: weight decreased from hybrid procedure to comprehensive second stage (-0.4±1.3 versus -2.3±1.4, p<0.01) and then increased to Fontan completion (-0.4±1.5 versus -0.6±1.4, p<0.01); four stage: weight decreased from hybrid procedure to Norwood (-2.0±1.4 versus -3.3±0.9, p=0.06), then stabilised to hemi-Fontan. Weight increased from hemi-Fontan to Fontan completion (-2.7±0.6 versus -1.0±0.7, p=0.01); primary Norwood group: weight decreased from Norwood to hemi-Fontan (p<0.001) and then increased to Fontan completion (p<0.001). Height: height declined from hybrid procedure to Fontan completion in the three-stage group. In the four-stage group, height decreased from hybrid to hemi-Fontan, and then increased to Fontan completion. The Norwood group decreased in height from Norwood to hemi-Fontan, followed by an increase to Fontan completion., Conclusion: In this study, we show that patients undergoing the hybrid procedure have poor weight gain before superior cavopulmonary connection, before returning to baseline by Fontan completion. This study identifies key periods to target poor somatic growth, a risk factor of morbidity and worse neurodevelopmental outcomes.
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- 2017
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20. An overview of recent research in marine biological invasions.
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Chan FT and Briski E
- Abstract
The Topical Collection on Invasive Species includes 50 articles addressing many tenets of marine invasion ecology. The collection covers important topics relating to propagule pressure associated with transport vectors, species characteristics, attributes of recipient ecosystems, invasion genetics, biotic interactions, testing of invasion hypotheses, invasion dynamics and spread, and impacts of nonindigenous species. This article summarizes some of the collection's highlights.
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- 2017
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21. Reporting trends of randomised controlled trials in heart failure with preserved ejection fraction: a systematic review.
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Zheng SL, Chan FT, Maclean E, Jayakumar S, and Nabeebaccus AA
- Abstract
Background: Heart failure with preserved ejection fraction (HFpEF) causes significant cardiovascular morbidity and mortality. Current consensus guidelines reflect the neutral results from randomised controlled trials (RCTs). Adequate trial reporting is a fundamental requirement before concluding on RCT intervention efficacy and is necessary for accurate meta-analysis and to provide insight into future trial design. The Consolidated Standards of Reporting Trials (CONSORT) 2010 statement provides a framework for complete trial reporting. Reporting quality of HFpEF RCTs has not been previously assessed, and this represents an important validation of reporting qualities to date., Objectives: The aim was to systematically identify RCTs investigating the efficacy of pharmacological therapies in HFpEF and to assess the quality of reporting using the CONSORT 2010 statement., Methods: MEDLINE, EMBASE and CENTRAL databases were searched from January 1996 to November 2015, with RCTs assessing pharmacological therapies on clinical outcomes in HFpEF patients included. The quality of reporting was assessed against the CONSORT 2010 checklist., Results: A total of 33 RCTs were included. The mean CONSORT score was 55.4% (SD 17.2%). The CONSORT score was strongly correlated with journal impact factor (r=0.53, p=0.003) and publication year (r=0.50, p=0.003). Articles published after the introduction of CONSORT 2010 statement had a significantly higher mean score compared with those published before (64% vs 50%, p=0.02)., Conclusions: Although the CONSORT score has increased with time, a significant proportion of HFpEF RCTs showed inadequate reporting standards. The level of adherence to CONSORT criteria could have an impact on the validity of trials and hence the interpretation of intervention efficacy. We recommend improving compliance with the CONSORT statement for future RCTs.
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- 2016
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22. The complete mitochondrial genome of the small Indian civet, Viverricula indica taivana - the first complete representation of the genus Viverricula.
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Weng HM, Wang L, Chan FT, Sun PY, Li KY, and Ju YT
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- Animals, Base Composition genetics, DNA, Mitochondrial genetics, RNA, Ribosomal genetics, RNA, Transfer genetics, Sequence Analysis, DNA, Tandem Repeat Sequences genetics, Viverridae classification, Genome, Mitochondrial genetics, Viverridae genetics
- Abstract
The complete mitochondrial genome of Viverricula indica taivana, exclusive of tandem repeats within the control region, is 16,583 bp in length, with a total base composition of: 33.18% A, 28.93% T, 24.88% C, and 13.00% G in H-strand. The genome contains 37 genes, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region.
- Published
- 2016
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23. Survival of ship biofouling assemblages during and after voyages to the Canadian Arctic.
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Chan FT, MacIsaac HJ, and Bailey SA
- Abstract
Human-mediated vectors often inadvertently translocate species assemblages to new environments. Examining the dynamics of entrained species assemblages during transport can provide insights into the introduction risk associated with these vectors. Ship biofouling is a major transport vector of nonindigenous species in coastal ecosystems globally, yet its magnitude in the Arctic is poorly understood. To determine whether biofouling organisms on ships can survive passages in Arctic waters, we examined how biofouling assemblage structure changed before, during, and after eight round-trip military voyages from temperate to Arctic ports in Canada. Species richness first decreased (~70% loss) and then recovered (~27% loss compared to the original assemblages), as ships travelled to and from the Arctic, respectively, whereas total abundance typically declined over time (~55% total loss). Biofouling community structure differed significantly before and during Arctic transits as well as between those sampled during and after voyages. Assemblage structure varied across different parts of the hull; however, temporal changes were independent of hull location, suggesting that niche areas did not provide protection for biofouling organisms against adverse conditions in the Arctic. Biofouling algae appear to be more tolerant of transport conditions during Arctic voyages than are mobile, sessile, and sedentary invertebrates. Our results suggest that biofouling assemblages on ships generally have poor survivorship during Arctic voyages. Nonetheless, some potential for transporting nonindigenous species to the Arctic via ship biofouling remains, as at least six taxa new to the Canadian Arctic, including a nonindigenous cirripede, appeared to have survived transits from temperate to Arctic ports., Competing Interests: The authors declare that they have no conflict of interest. Ethical approval This article does not contain any studies with human participants or animals performed by any of the authors.
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- 2016
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24. PATHOLOGY AND MOLECULAR DETECTION OF RABIES VIRUS IN FERRET BADGERS ASSOCIATED WITH A RABIES OUTBREAK IN TAIWAN.
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Chiou HY, Jeng CR, Wang HY, Inoue S, Chan FT, Liao JW, Chiou MT, and Pang VF
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- Animals, Antigens, Viral analysis, Brain virology, Electrophoresis, Agar Gel veterinary, Female, Fluorescent Antibody Technique veterinary, Immunohistochemistry veterinary, Male, Nucleic Acids analysis, Rabies epidemiology, Rabies pathology, Rabies virology, Rabies virus genetics, Rabies virus immunology, Retrospective Studies, Reverse Transcriptase Polymerase Chain Reaction veterinary, Taiwan epidemiology, Brain pathology, Disease Outbreaks veterinary, Mustelidae virology, Rabies veterinary, Rabies virus isolation & purification
- Abstract
Until Rabies virus (RABV) infection in Taiwan ferret badgers (TWFB; Melogale moschata subaurantiaca) was diagnosed in mid-June 2013, Taiwan had been considered rabies free for >50 yr. Although rabies has also been reported in ferret badgers in China, the pathologic changes and distribution of viral antigens of ferret badger-associated rabies have not been described. We performed a comprehensive pathologic study and molecular detection of rabies virus in three necropsied rabid TWFBs and evaluated archival paraffin-embedded tissue blocks of six other TWFBs necropsied during 2004 and 2012. As in other RABV-infected species, the characteristic pathologic changes in TWFBs were nonsuppurative meningoencephalomyelitis, ganglionitis, and the formation of typical intracytoplasmic Negri bodies, with the brain stem most affected. There was also variable spongiform degeneration, primarily in the perikaryon of neurons and neuropil, in the cerebral cortex, thalamus, and brain stem. In nonnervous system tissues, representative lesions included adrenal necrosis and lymphocytic interstitial sialadenitis. Immunohistochemical staining and fluorescent antibody test demonstrated viral antigens in the perikaryon of the neurons and axonal or dendritic processes throughout the nervous tissue and in the macrophages in various tissues. Similar to raccoons (Procyon lotor) and skunks (Mephitidae), the nervous tissue of rabid TWFBs displayed widely dispersed lesions, RABV antigens, and large numbers of Negri bodies. We traced the earliest rabid TWFB case back to 2004.
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- 2016
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25. ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function.
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Murakami T, Qamar S, Lin JQ, Schierle GS, Rees E, Miyashita A, Costa AR, Dodd RB, Chan FT, Michel CH, Kronenberg-Versteeg D, Li Y, Yang SP, Wakutani Y, Meadows W, Ferry RR, Dong L, Tartaglia GG, Favrin G, Lin WL, Dickson DW, Zhen M, Ron D, Schmitt-Ulms G, Fraser PE, Shneider NA, Holt C, Vendruscolo M, Kaminski CF, and St George-Hyslop P
- Subjects
- Animals, Caenorhabditis elegans, Cytoplasmic Granules metabolism, Disease Models, Animal, Longevity, Mutation, RNA-Binding Protein FUS chemistry, Ribonucleoproteins metabolism, Amyotrophic Lateral Sclerosis genetics, Caenorhabditis elegans Proteins genetics, Frontotemporal Lobar Degeneration genetics, Hydrogels, Motor Activity genetics, Phase Transition, RNA, Messenger metabolism, RNA-Binding Protein FUS genetics
- Abstract
The mechanisms by which mutations in FUS and other RNA binding proteins cause ALS and FTD remain controversial. We propose a model in which low-complexity (LC) domains of FUS drive its physiologically reversible assembly into membrane-free, liquid droplet and hydrogel-like structures. ALS/FTD mutations in LC or non-LC domains induce further phase transition into poorly soluble fibrillar hydrogels distinct from conventional amyloids. These assemblies are necessary and sufficient for neurotoxicity in a C. elegans model of FUS-dependent neurodegeneration. They trap other ribonucleoprotein (RNP) granule components and disrupt RNP granule function. One consequence is impairment of new protein synthesis by cytoplasmic RNP granules in axon terminals, where RNP granules regulate local RNA metabolism and translation. Nuclear FUS granules may be similarly affected. Inhibiting formation of these fibrillar hydrogel assemblies mitigates neurotoxicity and suggests a potential therapeutic strategy that may also be applicable to ALS/FTD associated with mutations in other RNA binding proteins., (Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2015
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26. A biologically inspired network design model.
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Zhang X, Adamatzky A, Chan FT, Deng Y, Yang H, Yang XS, Tsompanas MA, Sirakoulis GCh, and Mahadevan S
- Subjects
- Models, Theoretical
- Abstract
A network design problem is to select a subset of links in a transport network that satisfy passengers or cargo transportation demands while minimizing the overall costs of the transportation. We propose a mathematical model of the foraging behaviour of slime mould P. polycephalum to solve the network design problem and construct optimal transport networks. In our algorithm, a traffic flow between any two cities is estimated using a gravity model. The flow is imitated by the model of the slime mould. The algorithm model converges to a steady state, which represents a solution of the problem. We validate our approach on examples of major transport networks in Mexico and China. By comparing networks developed in our approach with the man-made highways, networks developed by the slime mould, and a cellular automata model inspired by slime mould, we demonstrate the flexibility and efficiency of our approach.
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- 2015
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27. Relative invasion risk for plankton across marine and freshwater systems: examining efficacy of proposed international ballast water discharge standards.
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Casas-Monroy O, Linley RD, Adams JK, Chan FT, Drake DA, and Bailey SA
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- Animals, Canada, Introduced Species, Phytoplankton, Risk Assessment, Salinity, Water Pollutants, Water Purification, Fresh Water, Plankton, Seawater, Waste Disposal, Fluid methods, Waste Disposal, Fluid standards
- Abstract
Understanding the implications of different management strategies is necessary to identify best conservation trajectories for ecosystems exposed to anthropogenic stressors. For example, science-based risk assessments at large scales are needed to understand efficacy of different vector management approaches aimed at preventing biological invasions associated with commercial shipping. We conducted a landscape-scale analysis to examine the relative invasion risk of ballast water discharges among different shipping pathways (e.g., Transoceanic, Coastal or Domestic), ecosystems (e.g., freshwater, brackish and marine), and timescales (annual and per discharge event) under current and future management regimes. The arrival and survival potential of nonindigenous species (NIS) was estimated based on directional shipping networks and their associated propagule pressure, environmental similarity between donor-recipient ecosystems (based on salinity and temperature), and effects of current and future management strategies (i.e., ballast water exchange and treatment to meet proposed international biological discharge standards). Our findings show that current requirements for ballast water exchange effectively reduce invasion risk to freshwater ecosystems but are less protective of marine ecosystems because of greater environmental mismatch between source (oceanic) and recipient (freshwater) ecoregions. Future requirements for ballast water treatment are expected to reduce risk of zooplankton NIS introductions across ecosystem types but are expected to be less effective in reducing risk of phytoplankton NIS. This large-scale risk assessment across heterogeneous ecosystems represents a major step towards understanding the likelihood of invasion in relation to shipping networks, the relative efficacy of different invasion management regimes and seizing opportunities to reduce the ecological and economic implications of biological invasions.
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- 2015
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28. Assessing introduction risk using species' rank-abundance distributions.
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Chan FT, Bradie J, Briski E, Bailey SA, Simard N, and MacIsaac HJ
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- Animals, Ecosystem, Linear Models, Models, Theoretical, Population Density, Risk, Seawater, Ships, Animal Distribution, Aquatic Organisms, Introduced Species
- Abstract
Mixed-species assemblages are often unintentionally introduced into new ecosystems. Analysing how assemblage structure varies during transport may provide insights into how introduction risk changes before propagules are released. Characterization of introduction risk is typically based on assessments of colonization pressure (CP, the number of species transported) and total propagule pressure (total PP, the total abundance of propagules released) associated with an invasion vector. Generally, invasion potential following introduction increases with greater CP or total PP. Here, we extend these assessments using rank-abundance distributions to examine how CP : total PP relationships change temporally in ballast water of ocean-going ships. Rank-abundance distributions and CP : total PP patterns varied widely between trans-Atlantic and trans-Pacific voyages, with the latter appearing to pose a much lower risk than the former. Responses also differed by taxonomic group, with invertebrates experiencing losses mainly in total PP, while diatoms and dinoflagellates sustained losses mainly in CP. In certain cases, open-ocean ballast water exchange appeared to increase introduction risk by uptake of new species or supplementation of existing ones. Our study demonstrates that rank-abundance distributions provide new insights into the utility of CP and PP in characterizing introduction risk., (© 2014 The Author(s) Published by the Royal Society. All rights reserved.)
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- 2015
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29. Molecular characterization of cryptically circulating rabies virus from ferret badgers, Taiwan.
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Chiou HY, Hsieh CH, Jeng CR, Chan FT, Wang HY, and Pang VF
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- Animals, Evolution, Molecular, Genetic Variation, Genome, Viral, Molecular Sequence Data, Phylogeny, Phylogeography, Rabies virology, Rabies virus classification, Taiwan epidemiology, Ferrets virology, Rabies epidemiology, Rabies virus genetics
- Abstract
After the last reported cases of rabies in a human in 1959 and a nonhuman animal in 1961, Taiwan was considered free from rabies. However, during 2012-2013, an outbreak occurred among ferret badgers in Taiwan. To examine the origin of this virus strain, we sequenced 3 complete genomes and acquired multiple rabies virus (RABV) nucleoprotein and glycoprotein sequences. Phylogeographic analyses demonstrated that the RABV affecting the Taiwan ferret badgers (RABV-TWFB) is a distinct lineage within the group of lineages from Asia and that it has been differentiated from its closest lineages, China I (including isolates from Chinese ferret badgers) and the Philippines, 158-210 years ago. The most recent common ancestor of RABV-TWFB originated 91-113 years ago. Our findings indicate that RABV could be cryptically circulating in the environment. An understanding of the underlying mechanism might shed light on the complex interaction between RABV and its host.
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- 2014
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30. An improved Physarum polycephalum algorithm for the shortest path problem.
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Zhang X, Wang Q, Adamatzky A, Chan FT, Mahadevan S, and Deng Y
- Subjects
- Models, Theoretical, Algorithms, Physarum polycephalum
- Abstract
Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due to its alleged ability to approximate shortest path from its inoculation site to a source of nutrients. Several algorithms were designed based on properties of the slime mould. Many of the Physarum-inspired algorithms suffer from a low converge speed. To accelerate the search of a solution and reduce a number of iterations we combined an original model of Physarum-inspired path solver with a new a parameter, called energy. We undertook a series of computational experiments on approximating shortest paths in networks with different topologies, and number of nodes varying from 15 to 2000. We found that the improved Physarum algorithm matches well with existing Physarum-inspired approaches yet outperforms them in number of iterations executed and a total running time. We also compare our algorithm with other existing algorithms, including the ant colony optimization algorithm and Dijkstra algorithm.
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- 2014
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31. Anesthesia with isoflurane and sevoflurane in the crested serpent eagle (Spilornis cheela hoya): minimum anesthetic concentration, physiological effects, hematocrit, plasma chemistry and behavioral effects.
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Chan FT, Chang GR, Wang HC, and Hsu TH
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- Animals, Blood Chemical Analysis, Body Temperature drug effects, Dose-Response Relationship, Drug, Eagles blood, Female, Hematocrit, Male, Recovery of Function, Respiratory Rate drug effects, Sevoflurane, Statistics, Nonparametric, Taiwan, Time Factors, Anesthesia, Inhalation veterinary, Eagles metabolism, Isoflurane pharmacology, Methyl Ethers pharmacology
- Abstract
The initial goal of this study was to determine the minimum anesthetic concentration (MAC) for isoflurane (ISO) and sevoflurane (SEVO) for the crested serpent eagle. Next, we compared the anesthetic effects of each on the physiological effects, hematocrit, plasma chemistry values and behavior in spontaneously breathing captive adult crested serpent eagles. Sixteen eagles were randomly allocated to two groups for anesthesia with ISO (n=8) or SEVO (n=8). First, we measured the MAC values of ISO and SEVO, and four weeks later, we investigated the effect of each on the physiological effects, hematocrit (HCT) and plasma chemistry values. The MAC values of ISO and SEVO for crested serpent eagles were 1.46 ± 0.30 and 2.03 ± 0.32%, respectively. The results revealed no significant differences between the two anesthetics in induction time, while time of extubation to recovery was significantly shorter with SEVO. A time-related increase in end-tidal CO₂ and decreases in body temperature and respiratory rates were observed during anesthesia with each anesthetic. There were no significant differences between the effect of the two anesthetics on heart rate, hematocrit, plasma chemistry values or respiration, although each caused minor respiration depression. We concluded that SEVO is a more effective inhalant agent than ISO for use in eagles, showing the most rapidest induction and recovery from anesthesia.
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- 2013
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32. Protein amyloids develop an intrinsic fluorescence signature during aggregation.
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Chan FT, Kaminski Schierle GS, Kumita JR, Bertoncini CW, Dobson CM, and Kaminski CF
- Subjects
- Humans, Protein Structure, Secondary, Amyloid chemistry, Amyloid beta-Peptides chemistry, Fluorescence, Muramidase chemistry, Peptide Fragments chemistry, Protein Structure, Tertiary, tau Proteins chemistry
- Abstract
We report observations of an intrinsic fluorescence in the visible range, which develops during the aggregation of a range of polypeptides, including the disease-related human peptides amyloid-β(1-40) and (1-42), lysozyme and tau. Characteristic fluorescence properties such as the emission lifetime and spectra were determined experimentally. This intrinsic fluorescence is independent of the presence of aromatic side-chain residues within the polypeptide structure. Rather, it appears to result from electronic levels that become available when the polypeptide chain folds into a cross-β sheet scaffold similar to what has been reported to take place in crystals. We use these findings to quantify protein aggregation in vitro by fluorescence imaging in a label-free manner.
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- 2013
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33. Hematocrit and plasma chemistry values in adult collared scops owls (Otus lettia) and crested serpent eagles (Spilornis cheela hoya).
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Chan FT, Lin PI, Chang GR, Wang HC, and Hsu TH
- Subjects
- Animals, Female, Male, Reference Values, Sex Factors, Species Specificity, Veterinary Medicine methods, Animals, Zoo, Blood Chemical Analysis veterinary, Eagles blood, Hematocrit veterinary, Strigiformes blood
- Abstract
In this study, we report hematocrit and plasma chemistry values for adult captive collared scops owls (Otus lettia) and crested serpent eagles (Spilornis cheela hoya). In particular, we address the gender-specific differences within these values. We measured hematocrit (HCT) and plasma chemistry values for uric acid (UA), plasma urea nitrogen (BUN), total protein (TP), albumin (ALB), glucose (GLU), cholesterol (CHO), triglyceride (TG), aspartate aminotransferase (AST), alanine aminotransferase (ALT), lactate dehydrogenase (LDH), alkaline phosphatase (ALP), total bilirubin (TBIL), creatine (CRE), creatine phosphokinase (CPK), amylase (AMY), calcium (CA), ionic phosphorous (IP) and sodium (NA), potassium (K) and chloride ions (CL) in 37 adult captive collared scops owls and 39 adult captive crested serpent eagles. Significant differences between the sexes were found for UA, GLU and CPK in the collared scope owls. UA and GLU concentrations were significantly higher (P<0.01 and P<0.05) among males than females, while the CPK concentration was significantly lower (P<0.05) in males. There were no significant differences in of all of the measured parameters between male and female eagles. These finding suggested that HCT and plasma chemistry values of raptors vary individually according to species and sex. Our results provide the 1st available reference data for ranges of plasma values in adult captive collared scops owls and crested serpent eagles, making them a potentially useful complementary diagnostic tool for veterinary care of individuals for both species in captivity.
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- 2012
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34. ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.
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Murakami T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H, Tartaglia GG, Vendruscolo M, Kaminski Schierle GS, Chan FT, Moloney A, Crowther D, Kaminski CF, Zhen M, and St George-Hyslop P
- Subjects
- Amyotrophic Lateral Sclerosis genetics, Amyotrophic Lateral Sclerosis physiopathology, Animals, Animals, Genetically Modified, Caenorhabditis elegans cytology, Caenorhabditis elegans genetics, Cell Death, Disease Models, Animal, Female, Humans, Male, Motor Neurons metabolism, Amyotrophic Lateral Sclerosis metabolism, Caenorhabditis elegans metabolism, Motor Neurons cytology, Mutation, RNA-Binding Protein FUS genetics, RNA-Binding Protein FUS metabolism
- Abstract
It is unclear whether mutations in fused in sarcoma (FUS) cause familial amyotrophic lateral sclerosis via a loss-of-function effect due to titrating FUS from the nucleus or a gain-of-function effect from cytoplasmic overabundance. To investigate this question, we generated a series of independent Caenorhabditis elegans lines expressing mutant or wild-type (WT) human FUS. We show that mutant FUS, but not WT-FUS, causes cytoplasmic mislocalization associated with progressive motor dysfunction and reduced lifespan. The severity of the mutant phenotype in C. elegans was directly correlated with the severity of the illness caused by the same mutation in humans, arguing that this model closely replicates key features of the human illness. Importantly, the mutant phenotype could not be rescued by overexpression of WT-FUS, even though WT-FUS had physiological intracellular localization, and was not recruited to the cytoplasmic mutant FUS aggregates. Our data suggest that FUS mutants cause neuronal dysfunction by a dominant gain-of-function effect related either to neurotoxic aggregates of mutant FUS in the cytoplasm or to dysfunction in its RNA-binding functions.
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- 2012
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35. Methylglyoxal: (active agent of manuka honey) in vitro activity against bacterial biofilms.
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Kilty SJ, Duval M, Chan FT, Ferris W, and Slinger R
- Subjects
- Humans, In Vitro Techniques, Plankton microbiology, Biofilms drug effects, Methicillin-Resistant Staphylococcus aureus drug effects, Plankton drug effects, Pseudomonas aeruginosa drug effects, Pyruvaldehyde pharmacology
- Abstract
Background: Pseudomonas aeruginosa (PA) and Staphylococcus aureus (SA) biofilms are associated with poor chronic rhinosinusitis (CRS) disease control following surgery. Manuka honey (MH) has been shown to be both an effective in vitro treatment agent for SA and PA biofilms and nontoxic to sinonasal respiratory mucosa. Methylglyoxal (MGO) has been reported to be the major antibacterial agent in MH. The effect of this agent against SA and PA biofilms has yet to be reported. Our objective was to determine the in vitro effect of MGO against biofilms of SA and PA, via in vitro testing of MGO against bacterial biofilms., Methods: An established biofilm model was used to determine the effective concentration (EC) of MGO against 10 isolates of methicillin-resistant SA (MRSA) and PA. The EC of MGO was also determined against planktonic (free-swimming) MRSA and PA., Results: For MRSA, the EC against planktonic organisms was a concentration of 0.08 mg/mL to 0.3 mg/mL whereas against the biofilm MRSA isolates, the EC ranged from 0.5 mg/mL to 3.6 mg/mL. For PA, the EC against planktonic organisms was a concentration of 0.15 mg/mL to 1.2 mg/mL for planktonic organisms whereas against the biofilm PA isolates, the EC ranged from 1.8 mg/mL to 7.3 mg/mL., Conclusion: MGO, a component of MH, is an effective antimicrobial agent against both planktonic and biofilm MRSA and PA organisms in vitro., (Copyright © 2011 American Rhinologic Society-American Academy of Otolaryngic Allergy, LLC.)
- Published
- 2011
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36. HomoFRET fluorescence anisotropy imaging as a tool to study molecular self-assembly in live cells.
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Chan FT, Kaminski CF, and Kaminski Schierle GS
- Subjects
- Cell Membrane metabolism, Fluorescence Polarization, Glycosylphosphatidylinositols chemistry, Green Fluorescent Proteins chemistry, Green Fluorescent Proteins metabolism, Fluorescence Resonance Energy Transfer methods, Microscopy, Fluorescence
- Abstract
Molecular self-assembly is a defining feature of numerous biological functions and dysfunctions, ranging from basic cell signalling to diseases mediated by protein aggregation. There is current demand for novel experimental methods to study molecular self-assembly in live cells, and thereby in its physiological context. Förster resonance energy transfer (FRET) between fluorophores of a single type, known as homoFRET, permits noninvasive detection and quantification of molecular clusters in live cells. It can thus provide powerful insights into the molecular physiology of living systems and disease. HomoFRET is detected by measuring the loss of fluorescence anisotropy upon excitation with polarised light. This article reviews recent key developments in homoFRET fluorescence anisotropy imaging for the detection and quantification of molecular self-assembly reactions in biological systems. A summary is given of the current state-of-the-art and case studies are presented of successful implementations, highlighting technical aspects which have to be mastered to bridge the gap between proof-of-concept experiments and biological discoveries., (Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2011
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37. Use of random amplified polymorphic DNA to identify several novel markers for sex identification in the crested serpent eagle and crested goshawk.
- Author
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Hsu HA, Wang PH, Chao MC, Chan FT, Wang LM, Lin PI, Chang CH, Yuan HW, and Ding ST
- Subjects
- Animals, Base Sequence, DNA Fingerprinting, DNA-Binding Proteins genetics, Eagles anatomy & histology, Female, Genetic Markers, Hawks anatomy & histology, Male, Molecular Sequence Data, Random Amplified Polymorphic DNA Technique, Sequence Alignment, Sex Characteristics, Eagles genetics, Hawks genetics, Sex Determination Analysis methods
- Abstract
The crested serpent eagle (Spilornis cheela hoya) has no distinct sexual dimorphic traits. In the current study, we report the results of an EE0.6 (EcoRI 0.6-kb fragment) sequence applied to S. cheela hoya and a novel random amplified polymorphic DNA (RAPD) marker that can be used to sex individuals within the species S. cheela hoya and Accipiter trivigatus formosae (crested goshawk). We used sex-specific primers for the avian CHD1 (chromo-helicase-DNA-binding 1) gene and the EE0.6 sequence in PCR assays to determine sex. In addition, 120 random primers were used for RAPD fingerprinting to search for novel sex-specific fragments of S. cheela hoya. The OPBB08 random primer generated a 1241-bp sex-specific fragment in all female S. cheela hoya. From the nucleotide sequence, PCR primers were designed to amplify 553-, 895-, and 194-bp sex-specific fragments present in all female S. cheela hoya. One of these primer pairs (ScBB08-7F/R) also amplified a male/female common fragment that can be used as an internal control (543bp). Moreover, one of the primer pairs (ScBB08-5aF/5bR) could be used to identify genders of A. trivigatus formosae. In conclusion, we identified novel sex-specific DNA markers of S. cheela hoya and A. trivigatus formosae that can be used for rapid and accurate sex identification.
- Published
- 2009
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38. Soluble vascular endothelial growth factor receptor-1 protects mice in sepsis.
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Tsao PN, Chan FT, Wei SC, Hsieh WS, Chou HC, Su YN, Chen CY, Hsu WM, Hsieh FJ, and Hsu SM
- Subjects
- Animals, In Vitro Techniques, Inflammation immunology, Interleukin-1beta drug effects, Lipopolysaccharides, Mice, Mice, Inbred C57BL, Recombinant Proteins pharmacology, Recombinant Proteins therapeutic use, Shock, Septic physiopathology, Survival Analysis, Tumor Necrosis Factor-alpha drug effects, Vascular Endothelial Growth Factor A blood, Vascular Endothelial Growth Factor Receptor-1 blood, Shock, Septic drug therapy, Vascular Endothelial Growth Factor A antagonists & inhibitors, Vascular Endothelial Growth Factor Receptor-1 therapeutic use
- Abstract
Objective: To determine the putative role in the modulation of inflammation of a soluble form of Flt-1 (sFlt), a potent vascular endothelial growth factor antagonist, in experimental endotoxemia and sepsis., Design: Randomized prospective experimental study., Setting: University medical laboratory., Subjects: Male C56BL/6 strain mice., Interventions: We investigated the expression patterns and the effects of vascular endothelial growth factor and soluble Flt-1 in experimental endotoxic shock and sepsis. The possible anti-inflammatory mechanism of soluble Flt-1 was also evaluated., Measurements and Main Results: Both vascular endothelial growth factor and sFlt-1 were rapidly released from macrophages activated in vitro by lipopolysaccharide and in the plasma of endotoxemic mice. Administration of vascular endothelial growth factor enhanced proinflammatory cytokine production and mediated a dramatic increase in mortality in endotoxemic mice. Treatment with sFlt-1 attenuated inflammatory responses, inhibited recruitment of inflammatory cells into the peritoneal cavity, and improved survival in a lethal endotoxemia and cecal ligation and puncture-induced sepsis model, even when administered as late as 24 hrs after the onset of sepsis., Conclusions: These findings support a critical protective role of sFlt-1 in endotoxic shock and sepsis. sFlt-1 may therefore have utility as an adjunctive agent for the treatment of sepsis syndrome.
- Published
- 2007
- Full Text
- View/download PDF
39. Sputum versus bronchoscopy for diagnosis of Pseudomonas aeruginosa biofilms in cystic fibrosis.
- Author
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Aaron SD, Kottachchi D, Ferris WJ, Vandemheen KL, St Denis ML, Plouffe A, Doucette SP, Saginur R, Chan FT, and Ramotar K
- Subjects
- Adult, Biopsy, Bronchi pathology, Bronchoalveolar Lavage, Chronic Disease, Drug Resistance, Microbial, Female, Genotype, Humans, Male, Microbial Sensitivity Tests, Pseudomonas Infections complications, Pseudomonas aeruginosa genetics, Biofilms, Bronchoscopy, Cystic Fibrosis complications, Pseudomonas Infections diagnosis, Pseudomonas aeruginosa isolation & purification, Sputum microbiology
- Abstract
The present authors hypothesised that bronchoscopy with protected specimen brush may sample biofilm-forming bacteria adherent to the airway wall, whereas traditional sputum collection may not. Pseudomonas aeruginosa obtained from sputum, bronchoalveolar lavage and protected brush, taken from the right upper lung bronchus of 12 adult patients with cystic fibrosis, were compared. Retrieved bacteria were genotyped, and grown in planktonic cultures and as biofilms, and susceptibilities to individual antibiotics and to antibiotic combinations were determined. Bacterial cultures obtained using bronchoscopy did not yield any new strains of bacteria that were not also found in sputum. A total of 10 patients (83%) had a single strain of P. aeruginosa found using sputum, bronchoalveolar lavage and protected brush techniques, and two patients (17%) had two strains recovered in sputum, but only one strain was recovered using bronchoscopic techniques. Susceptibility to single antibiotics and to antibiotic combinations were not different between planktonically or biofilm-grown bacteria derived from sputum, as compared to those obtained by bronchoalveolar lavage and protected brush. In conclusion, sputum collection provides as much information as bronchoscopy for characterising the genotype and antibiotic susceptibility of chronic Pseudomonas aeruginosa infection in patients with stable cystic fibrosis.
- Published
- 2004
- Full Text
- View/download PDF
40. Incidence and pathogenicity of Arcanobacterium haemolyticum during a 2-year study in Ottawa.
- Author
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Mackenzie A, Fuite LA, Chan FT, King J, Allen U, MacDonald N, and Diaz-Mitoma F
- Subjects
- Actinomycetaceae drug effects, Actinomycetaceae isolation & purification, Actinomycetales Infections etiology, Adolescent, Adult, Age Distribution, Anti-Bacterial Agents pharmacology, Child, Child, Preschool, Erythromycin pharmacology, Female, Fever microbiology, Humans, Incidence, Infant, Male, Microbial Sensitivity Tests, Ontario epidemiology, Penicillins pharmacology, Pharyngitis microbiology, Pharynx microbiology, Urticaria microbiology, Actinomycetales Infections epidemiology, Fever epidemiology, Pharyngitis epidemiology, Urticaria epidemiology
- Abstract
Arcanobacterium haemolyticum has been described as a rare cause of systemic invasive disease and is occasionally isolated from throat swabs. We describe a 2-year study of the incidence and clinical features of A. haemolyticus infection in a pediatric and adolescent population. A total of 11,620 throat swabs were examined for A. haemolyticum with use of a locally developed selective medium. Controls (2,241) were healthy students who were recruited from a separate study. A. haemolyticum was isolated from 42 patients, with the maximum incidence in the 15 to 18-year-old age group; in this subset the incidence was 2.5%. There were no isolates of A. haemolyticum found in the healthy controls, and the difference in incidence between patients and controls in the 15 to 18-year-old age group was highly significant (P < .01). Approximately half of the patients infected with A. haemolyticum had a rash. In 5 patients, A. haemolyticum was associated with a positive monospot test. The organism was highly susceptible to erythromycin and less susceptible to penicillin. The evidence from this study suggests that A. haemolyticum may be a pathogen with maximum incidence in the 15 to 18-year-old age group.
- Published
- 1995
- Full Text
- View/download PDF
41. Susceptibility testing of Dientamoeba fragilis ATCC 30948 with iodoquinol, paromomycin, tetracycline, and metronidazole.
- Author
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Chan FT, Guan MX, Mackenzie AM, and Diaz-Mitoma F
- Subjects
- Animals, Bacteroides drug effects, Culture Media, Iodoquinol pharmacology, Klebsiella pneumoniae drug effects, Metronidazole pharmacology, Paromomycin pharmacology, Tetracycline pharmacology, Antiprotozoal Agents pharmacology, Dientamoeba drug effects
- Abstract
Susceptibility testing was performed on Dientamoeba fragilis ATCC 30948 in a dixenic culture with Klebsiella pneumoniae and Bacteroides vulgatus. D. fragilis was cocultured with the bacteria in TYGM-9 medium (ATCC medium 1171). The activities of antiparasitic drugs were assessed by counting viable D. fragilis trophozoites with a hemacytometer by trypan blue exclusion. The minimal amebicidal concentrations of the following four drugs were determined: iodoquinol at 128 micrograms/ml, paromomycin at 16 micrograms/ml, tetracycline (questionably) at 32 micrograms/ml, and metronidazole at 32 micrograms/ml.
- Published
- 1994
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- View/download PDF
42. Thermoelectric power of the thallium-based superconductor Tl2Ba2Ca2Cu3O10- delta.
- Author
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Xin Y, Wong KW, Fan CX, Sheng ZZ, and Chan FT
- Published
- 1993
- Full Text
- View/download PDF
43. Application of indirect immunofluorescence to detection of Dientamoeba fragilis trophozoites in fecal specimens.
- Author
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Chan FT, Guan MX, and Mackenzie AM
- Subjects
- Animals, Antigens, Protozoan analysis, Dientamoeba immunology, Dientamoebiasis parasitology, Evaluation Studies as Topic, Humans, Parasitology methods, Dientamoeba isolation & purification, Dientamoebiasis diagnosis, Feces parasitology, Fluorescent Antibody Technique
- Abstract
An indirect fluorescent-antibody (IFA) assay was carried out to examine for the presence of Dientamoeba fragilis trophozoites in preserved fecal specimens. Antiserum to D. fragilis trophozoites was raised in a rabbit with a dixenic culture of D. fragilis (ATCC 30948) from the American Type Culture Collection. After absorption with Klebsiella pneumoniae and Bacteroides vulgatus, the immune rabbit serum was used for examination by the IFA assay. A total of 155 clinical samples were tested; 42 with no parasites, 9 with D. fragilis, and 104 with other parasites. The IFA assay identified seven D. fragilis organisms. Two specimens with doubtful IFA assay readings showed very scanty amounts of D. fragilis trophozoites on stained smears. There were no false-positive IFA assay readings. The IFA assay appeared to be a promising method because of its speed in screening. The specificity of the IFA assay indicates that other diagnostic tests such as an enzyme-linked immunosorbent assay could be developed to identify D. fragilis antigens in fecal specimens.
- Published
- 1993
- Full Text
- View/download PDF
44. First-principles calculation of optical properties of C60 in the fcc lattice.
- Author
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Ching WY, Huang MZ, Xu YN, Harter WG, and Chan FT
- Published
- 1991
- Full Text
- View/download PDF
45. Analytic solution of a two-dimensional hydrogen atom. I. Nonrelativistic theory.
- Author
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Yang XL, Guo SH, Chan FT, Wong KW, and Ching WY
- Published
- 1991
- Full Text
- View/download PDF
46. Analytic solution of a two-dimensional hydrogen atom. II. Relativistic theory.
- Author
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Guo SH, Yang XL, Chan FT, Wong KW, and Ching WY
- Published
- 1991
- Full Text
- View/download PDF
47. Usefulness of serotyping in the epidemiology of family outbreaks of Campylobacter jejuni.
- Author
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Chan FT, MacKenzie AM, Penner JL, and Hennessy JN
- Subjects
- Campylobacter Infections epidemiology, Disease Outbreaks, Female, Gastroenteritis etiology, Humans, Male, Serotyping, Campylobacter Infections genetics, Campylobacter fetus classification
- Published
- 1984
- Full Text
- View/download PDF
48. Retardation in two-photon absorption.
- Author
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Yang XL, Chan FT, and Lieber M
- Published
- 1989
- Full Text
- View/download PDF
49. Evaluation of a kit for rapid detection of group A streptococci in a pediatric emergency department.
- Author
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Mackenzie AM, Li MM, and Chan FT
- Subjects
- Child, Emergencies, Humans, Pharyngitis immunology, Reagent Kits, Diagnostic, Streptococcal Infections immunology, Antigens, Bacterial analysis, Pharyngitis diagnosis, Streptococcal Infections diagnosis, Streptococcus pyogenes immunology
- Abstract
We evaluated a kit for the rapid detection of group A streptococci from throat swabs (Culturette Brand 10-Minute Group A Strep ID, Marion Scientific, Division of Marion Laboratories, Inc., Kansas City, Missouri) in the laboratory and in a busy pediatric emergency department. The sensitivity of the kit in the laboratory was 80% for all specimens and 94% for specimens with more than 10 colony-forming units of group A streptococci; the specificity was 99%. After initial training, emergency department pediatricians and nurses achieved sensitivities of 72% and 69% respectively. The specificity achieved by the pediatricians was 76% initially but 96% after further training. Untrained residents achieved a sensitivity of 58%. We conclude that this kit is potentially useful in the hands of adequately trained personnel, but without training the accuracy of the results is unacceptable. We recommend that the kit be used by designated staff trained and monitored by laboratory personnel.
- Published
- 1988
50. Enrichment medium and control system for isolation of Campylobacter fetus subsp. jejuni from stools.
- Author
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Chan FT and Mackenzie AM
- Subjects
- Bacteriological Techniques, Culture Media, Humans, Campylobacter fetus isolation & purification, Feces microbiology
- Abstract
Enrichment culture with a semisolid medium increased by 6% the isolation rate of Campylobacter fetus subsp. jejuni. The semisolid enrichment medium was also used successfully as a transport medium for Campylobacter isolates. A blood agar plate streaked with Pseudomonas aeruginosa, Clostridium perfringens, and a laboratory strain of Campylobacter was a good control system for the microaerophilic atmosphere. Good growth of all three organisms indicated satisfactory conditions for culturing Campylobacter.
- Published
- 1982
- Full Text
- View/download PDF
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