63 results on '"Chalker JM"'
Search Results
2. Laying Waste to Mercury: Inexpensive Sorbents Made from Sulfur and Recycled Cooking Oils
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Worthington, MJH, Kucera, RL, Albuquerque, IS, Gibson, CT, Sibley, A, Slattery, AD, Campbell, JA, Alboaiji, SFK, Muller, KA, Young, J, Adamson, N, Gascooke, JR, Jampaiah, D, Sabri, YM, Bhargava, SK, Ippolito, SJ, Lewis, DA, Quinton, JS, Ellis, AV, Johs, A, Bernardes, GJL, Chalker, JM, Worthington, MJH, Kucera, RL, Albuquerque, IS, Gibson, CT, Sibley, A, Slattery, AD, Campbell, JA, Alboaiji, SFK, Muller, KA, Young, J, Adamson, N, Gascooke, JR, Jampaiah, D, Sabri, YM, Bhargava, SK, Ippolito, SJ, Lewis, DA, Quinton, JS, Ellis, AV, Johs, A, Bernardes, GJL, and Chalker, JM
- Abstract
Mercury pollution threatens the environment and human health across the globe. This neurotoxic substance is encountered in artisanal gold mining, coal combustion, oil and gas refining, waste incineration, chloralkali plant operation, metallurgy, and areas of agriculture in which mercury‐rich fungicides are used. Thousands of tonnes of mercury are emitted annually through these activities. With the Minamata Convention on Mercury entering force this year, increasing regulation of mercury pollution is imminent. It is therefore critical to provide inexpensive and scalable mercury sorbents. The research herein addresses this need by introducing low‐cost mercury sorbents made solely from sulfur and unsaturated cooking oils. A porous version of the polymer was prepared by simply synthesising the polymer in the presence of a sodium chloride porogen. The resulting material is a rubber that captures liquid mercury metal, mercury vapour, inorganic mercury bound to organic matter, and highly toxic alkylmercury compounds. Mercury removal from air, water and soil was demonstrated. Because sulfur is a by‐product of petroleum refining and spent cooking oils from the food industry are suitable starting materials, these mercury‐capturing polymers can be synthesised entirely from waste and supplied on multi‐kilogram scales. This study is therefore an advance in waste valorisation and environmental chemistry.
- Published
- 2017
3. Chemical approaches to mapping the function of post-translational modifications
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Gamblin, DP, van Kasteren, SI, Chalker, JM, and Davis, BG
- Abstract
Strategies for the chemical construction of synthetic proteins with precisely positioned post-translational modifications or their mimics offer a powerful method for dissecting the complexity of functional protein alteration and the associated complexity of proteomes.
- Published
- 2016
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4. Norbornene probes for the study of cysteine oxidation
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Alcock, LJ, Farrell, KD, Akol, MT, Jones, GH, Tierney, MM, Kramer, HB, Pukala, TL, Bernardes, GJL, Perkins, MV, and Chalker, JM
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Oxidative stress ,Cysteine ,Cysteine sulfenic acid ,Chemical biology ,3. Good health ,Norbornene - Abstract
Cysteine residues on proteins can react with cellular oxidants such as hydrogen peroxide. While this process is important for scavenging excess reactive oxygen species, the products of this oxidation may also mediate cell signalling. To understand the role of cysteine oxidation in biology, selective probes are required to detect and quantify its occurence. Cysteine oxidation products such as sulfenic acids are sometimes unstable and therefore short-lived. If such cysteine derivatives are to be analysed, rapid reaction with the probe is required. Here we introduce norbornene derivatives as probes for cysteine oxidation, and demonstrate their ability to trap sulfenic acids. The synthesis of norbornene derivatives containing alkyne or biotin affinity tags are also reported to facilitate the use of these probes in chemical biology and proteomics.
5. Sustainable Polysulfides for Oil Spill Remediation: Repurposing Industrial Waste for Environmental Benefit
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Worthington, MJH, Shearer, CJ, Esdaile, LJ, Campbell, JA, Gibson, CT, Legg, SK, Yin, Y, Lundquist, NA, Gascooke, Albuquerque, IS, Shapter, JG, Andersson, GG, Lewis, DA, Bernardes, GJL, and Chalker, JM
- Subjects
waste valorization ,inverse vulcanization ,13. Climate action ,sulfur ,fungi ,food and beverages ,polysulfides ,oil spills ,12. Responsible consumption - Abstract
Crude oil and hydrocarbon fuel spills are a perennial threat to aquatic environments. Inexpensive and sustainable sorbents are needed to mitigate the ecological harm of this pollution. To address this need, this study features a low-density polysulfide polymer that was prepared by the direct reaction of sulfur and used cooking oils. Because both sulfur and cooking oils are hydrophobic, the polymer has an affinity for hydrocarbons such as crude oil and diesel fuel and can rapidly remove them from seawater. Through simple mechanical compression, the oil can be recovered and the polymer can be re-used in oil spill remediation. The polysulfide is unique because it is prepared entirely from re-purposed waste: sulfur is a by-product of the petroleum industry and used cooking oil can be used as a co-monomer. In this way, sulfur waste from the oil industry is used to make an effective sorbent for combatting pollution from that same sector.
6. A silicon-labelled amino acid suitable for late-stage fluorination and unexpected oxidative cleavage reactions in the preparation of a key intermediate in the Strecker synthesis
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Gonçalo J. L. Bernardes, Justin M. Chalker, Michael V. Perkins, Kymberley R. Scroggie, Lisa J Alcock, Maria João Matos, Chalker, JM [0000-0002-7504-5508], and Apollo - University of Cambridge Repository
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chemistry.chemical_classification ,amino acids ,Silicon ,010405 organic chemistry ,Stereochemistry ,Chemistry ,Organic Chemistry ,Strecker amino acid synthesis ,Biophysics ,Late stage ,chemistry.chemical_element ,silicon ,010402 general chemistry ,01 natural sciences ,Biochemistry ,fluorination ,0104 chemical sciences ,Amino acid ,oxidative cleavage ,Biomaterials ,PET ,Strecker synthesis ,Oxidative cleavage - Abstract
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited., A novel silicon-substituted phenylalanine derivative was prepared using the Strecker amino acid synthesis. An unexpected oxidative cleavage was observed in the preparation of the aldehyde required for the Strecker reaction. In this step, a homobenzylic alcohol intermediate was oxidatively cleaved to the corresponding benzaldehyde using either chromium or palladium based oxidants. This undesired side reaction was overcome through the use of Dess-Martin Periodinane, or through an efficient TEMPO-bleach oxidation. The amino acid prepared in this study was then labelled with fluoride in aqueous solvent using a range of fluoride sources. The efficiency of this labelling motivates future studies in late-stage fluorination of peptide and protein therapeutics for use in positron emission tomography., Australian Research Council, Grant Number: DE150101863; The Royal Society (University Research Fellowship; the EPSRC; the European Research Council (Starting Grant); FCT Portugal
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- 2018
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7. Sustainable Polysulfides for Oil Spill Remediation: Repurposing Industrial Waste for Environmental Benefit
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Joseph G. Shapter, Louisa J. Esdaile, Stephanie K. Legg, Cameron J. Shearer, Jason R. Gascooke, Christopher T. Gibson, Justin M. Chalker, Nicholas A. Lundquist, David A. Lewis, Inês S. Albuquerque, Jonathan A. Campbell, Max J. H. Worthington, Gunther G. Andersson, Yanting Yin, Gonçalo J. L. Bernardes, Worthington, Max JH, Shearer, Cameron J, Esdaile, Louisa J, Campbell, Jonathan A, Gibson, Christopher T, Legg, Stephanie K, Yin, Yanting, Lundquist, Nicholas A, Gascooke, Jason R, Albuquerque, Ines S, Shapter, Joseph G, Andersson, Gunther G, Lewis, David A, Bernardes, Goncalo JL, Chalker, Justin M, Chalker, JM [0000-0002-7504-5508], and Apollo - University of Cambridge Repository
- Subjects
Pollution ,inverse vulcanization ,Environmental remediation ,media_common.quotation_subject ,Materials Science ,chemistry.chemical_element ,02 engineering and technology ,01 natural sciences ,fuel spills ,Industrial waste ,Crude oil ,chemistry.chemical_compound ,Diesel fuel ,hydrocarbon ,oil spills ,Environmental Remediation ,Water pollution ,Polysulfide ,General Environmental Science ,media_common ,Waste management ,010405 organic chemistry ,Renewable Energy, Sustainability and the Environment ,business.industry ,polysulfides ,fungi ,Oil spill ,food and beverages ,Polymer Chemistry ,021001 nanoscience & nanotechnology ,Sulfur ,sulfur ,0104 chemical sciences ,Chemistry ,waste valorization ,chemistry ,Petroleum industry ,13. Climate action ,Inverse Vulcanisation ,Environmental science ,aquatic environments ,0210 nano-technology ,business - Abstract
© 2018 The Authors. Published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited., Crude oil and hydrocarbon fuel spills are a perennial threat to aquatic environments. Inexpensive and sustainable sorbents are needed to mitigate the ecological harm of this pollution. To address this need, this study features a low‐density polysulfide polymer that is prepared by the direct reaction of sulfur and used cooking oils. Because both sulfur and cooking oils are hydrophobic, the polymer has an affinity for hydrocarbons such as crude oil and diesel fuel and can rapidly remove them from seawater. Through simple mechanical compression, the oil can be recovered and the polymer can be reused in oil spill remediation. The polysulfide is unique because it is prepared entirely from repurposed waste: sulfur is a by‐product of the petroleum industry and used cooking oil can be used as a comonomer. In this way, sulfur waste from the oil industry is used to make an effective sorbent for combatting pollution from that same sector.
- Published
- 2018
8. Electrochemically Generated Carbocations in Organic Synthesis.
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Hawkins BC, Chalker JM, Coote ML, and Bissember AC
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This Minireview examines a selection of case studies that showcase distinctive and enabling electrochemical approaches that have allowed for the generation and reaction of carbocation intermediates under mild conditions. Particular emphasis is placed on the progress that has been made in this area of organic synthesis and polymer chemistry over the past decade., (© 2024 The Author(s). Angewandte Chemie International Edition published by Wiley-VCH GmbH.)
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- 2024
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9. Electrochemical Synthesis of Metal Complexes Using Dissolving Anodes.
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Nicholls TP, Jia Z, and Chalker JM
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The use of dissolving metal electrodes for the direct electrochemical synthesis of metal complexes has been used widely in the last decade. A major benefit of the electrochemical approach is the minimal by-products resulting from the synthesis. As such, metal complexes can be produced on-demand and used directly in catalysis without the need for purification. Furthermore, the electrochemical method enables the production of metal complexes that cannot be synthesized using other methods, including those with base-sensitive ligands. General principles of the electrochemical method and recent advances in the field are discussed., (© 2024 Wiley-VCH GmbH.)
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- 2024
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10. Modification of Polysulfide Surfaces with Low-Power Lasers.
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Mann AK, Lisboa LS, Tonkin SJ, Gascooke JR, Chalker JM, and Gibson CT
- Abstract
The modification of polymer surfaces using laser light is important for many applications in the nano-, bio- and chemical sciences. Such capabilities have supported advances in biomedical devices, electronics, information storage, microfluidics, and other applications. In most cases, these modifications require high power lasers that are expensive and require specialized equipment and facilities to minimize risk of hazardous radiation. Additionally, polymer systems that can be easily modified by lasers are often complex and costly to prepare. In this report, these challenges are addressed with the discovery of low-cost sulfur copolymers that can be rapidly modified with lasers emitting low-power infrared and visible light. The featured copolymers are made from elemental sulfur and either cyclopentadiene or dicyclopentadiene. Using a suite of lasers with discreet wavelengths (532, 638 and 786 nm) and powers, a variety of surface modifications could be made on the polymers such as controlled swelling or etching via ablation. The facile synthesis and laser modification of these polymer systems were exploited in applications such as direct laser lithography and erasable information storage., (© 2024 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)
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- 2024
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11. Electrochemical Synthesis of Gold-N-Heterocyclic Carbene Complexes.
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Nicholls TP, Jia Z, and Chalker JM
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An electrochemical synthesis of gold(I)-N-heterocyclic carbene (Au-NHC) complexes has been developed. The electrochemical methodology uses only imidazolium salts, gold metal electrodes, and electricity to produce these complexes with hydrogen gas as the only by-product. This high-yielding and operationally simple procedure has been used to produce eight mononuclear and three dinuclear Au-NHC complexes. The electrochemical procedure facilitates a clean reaction with no by-products. As such, Au-NHC complexes can be directly transferred to catalytic reactions without work-up or purification. The Au-NHC complexes were produced on-demand and tested as catalysts in a vinylcyclopropanation reaction. All mononuclear Au-NHC complexes performed similarly to or better than the isolated complexes., (© 2023 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)
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- 2024
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12. Inactivation of human coronaviruses using an automated room disinfection device.
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Lundquist NA, Kifelew LG, Elmas S, Jia Z, Speck PG, and Chalker JM
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- Humans, Disinfection methods, Chlorine pharmacology, Disinfectants pharmacology, Viruses, Coronavirus 229E, Human
- Abstract
The emergence of more virulent and epidemic strains of viruses, especially in the context of COVID-19, makes it more important than ever to improve methods of decontamination. The objective of this study was to evaluate the potential of on-demand production of chlorine species to inactivate human coronaviruses. The commercial prototype disinfection unit was provided by Unipolar Water Technologies. The Unipolar device generates active chlorine species using an electrochemical reaction and dispenses the disinfectant vapour onto surfaces with an aspirator. The minimum effective concentration and exposure time of disinfectant were evaluated on human hepatoma (Huh7) cells using 50% tissue culture infectious dose (TCID
50 ) assay and human coronavirus 229E (HCoV-229E), a surrogate for pathogenic human coronaviruses. We showed that chlorine species generated in the Unipolar device inactivate HCoV-229E on glass surfaces at ≥ 400 parts per million active chlorine concentration with a 5 min exposure time. Here, inactivation refers to the inability of the virus to infect the Huh7 cells. Importantly, no toxic effect was observed on Huh7 cells for any of the active chlorine concentrations and contact times tested., (© 2023. The Author(s).)- Published
- 2023
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13. Electrochemical Synthesis of Poly(trisulfides).
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Pople JMM, Nicholls TP, Pham LN, Bloch WM, Lisboa LS, Perkins MV, Gibson CT, Coote ML, Jia Z, and Chalker JM
- Abstract
With increasing interest in high sulfur content polymers, there is a need to develop new methods for their synthesis that feature improved safety and control of structure. In this report, electrochemically initiated ring-opening polymerization of norbornene-based cyclic trisulfide monomers delivered well-defined, linear poly(trisulfides), which were solution processable. Electrochemistry provided a controlled initiation step that obviates the need for hazardous chemical initiators. The high temperatures required for inverse vulcanization are also avoided resulting in an improved safety profile. Density functional theory calculations revealed a reversible "self-correcting" mechanism that ensures trisulfide linkages between monomer units. This control over sulfur rank is a new benchmark for high sulfur content polymers and creates opportunities to better understand the effects of sulfur rank on polymer properties. Thermogravimetric analysis coupled with mass spectrometry revealed the ability to recycle the polymer to the cyclic trisulfide monomer by thermal depolymerization. The featured poly(trisulfide) is an effective gold sorbent, with potential applications in mining and electronic waste recycling. A water-soluble poly(trisulfide) containing a carboxylic acid group was also produced and found to be effective in the binding and recovery of copper from aqueous media.
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- 2023
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14. Integration of the Exogenous Tuning of Thraustochytrid Fermentation and Sulfur Polymerization of Single-Cell Oil for Developing Plant-like Oils.
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Gupta A, Worthington MJH, Chalker JM, and Puri M
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- Fermentation, Polymerization, Limonene, Fatty Acids, Unsaturated, Oleic Acid, Fatty Acids, Monounsaturated, Plant Oils, Sulfur, Stearic Acids, Vitamin B 12, Palmitic Acids, Polysorbates, Fatty Acids
- Abstract
In this study, we have demonstrated a bioprocessing approach encompassing the exogenous addition of low-molecular-weight compounds to tune the fatty acid (FA) profile in a novel thraustochytrid strain to produce desirable FAs. Maximum lipid recovery (38%, dry wt. biomass) was obtained at 1% Tween 80 and 0.25 mg/L of Vitamin B12. The transesterified lipid showed palmitic acid (C16, 35.7% TFA), stearic acid (C18, 2.1% TFA), and oleic acid (C18:1, 18.7% TFA) as the main components of total FAs, which are mainly present in plant oils. Strikingly, D-limonene addition in the fermentation medium repressed the production of polyunsaturated fatty acid (PUFAs). Sulfur-polymerization-guided lipid separation revealed the presence of saturated (SFAs, 53% TFA) and monounsaturated fatty acids (MUFAs, 46.6% TFA) in thraustochytrid oil that mimics plant-oil-like FA profiles. This work is industrially valuable and advocates the use of sulfur polymerization for preparation of plant-like oils through tuneable thraustochytrid lipids.
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- 2022
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15. Modelling mercury sorption of a polysulfide coating made from sulfur and limonene.
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Worthington MJH, Mann M, Muhti IY, Tikoalu AD, Gibson CT, Jia Z, Miller AD, and Chalker JM
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- Adsorption, Limonene, Polymers, Sodium Chloride, Sulfides, Sulfur, Mercury
- Abstract
A polymer made from sulfur and limonene was used to coat silica gel and then evaluated as a mercury sorbent. A kinetic model of mercury uptake was established for a range of pH values and concentrations of sodium chloride. Mercury uptake was generally rapid from pH = 3 to pH = 11. At neutral pH, the sorbent (500 mg with a 10 : 1 ratio of silica to polymer) could remove 90% of mercury within one minute from a 100 mL solution containing 5 ppm HgCl
2 and 99% over 5 minutes. It was found that sodium chloride, at concentrations comparable to seawater, dramatically reduced mercury uptake rates and capacity. It was also found that the spent sorbent was stable in acidic and neutral media, but degraded at pH 11 which led to mercury leaching. These results help define the conditions under which the sorbent could be used, which is an important advance for using this material in remediation processes.- Published
- 2022
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16. Trace Amine-Associated Receptor 1 (TAAR1): Molecular and Clinical Insights for the Treatment of Schizophrenia and Related Comorbidities.
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Nair PC, Chalker JM, McKinnon RA, Langmead CJ, Gregory KJ, and Bastiampillai T
- Abstract
Schizophrenia is a complex and severe mental illness. Current treatments for schizophrenia typically modulate dopaminergic neurotransmission by D
2 -receptor blockade. While reducing positive symptoms of schizophrenia, current antipsychotic drugs have little clinical effect on negative symptoms and cognitive impairments. For the last few decades, discovery efforts have sought nondopaminergic compounds with the aim to effectively treat the broad symptoms of schizophrenia. In this viewpoint, we provide an overview on trace-amine associated receptor-1 (TAAR1), which presents a clinically validated nondopaminergic target for treating schizophrenia and related disorders, with significantly less overall side-effect burden. TAAR1 agonists may also be specifically beneficial for the substance abuse comorbidity and metabolic syndrome that is often present in patients with schizophrenia., Competing Interests: The authors declare no competing financial interest., (© 2022 American Chemical Society.)- Published
- 2022
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17. Vortex fluidic induced mass transfer across immiscible phases.
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Jellicoe M, Igder A, Chuah C, Jones DB, Luo X, Stubbs KA, Crawley EM, Pye SJ, Joseph N, Vimalananthan K, Gardner Z, Harvey DP, Chen X, Salvemini F, He S, Zhang W, Chalker JM, Quinton JS, Tang Y, and Raston CL
- Abstract
Mixing immiscible liquids typically requires the use of auxiliary substances including phase transfer catalysts, microgels, surfactants, complex polymers and nano-particles and/or micromixers. Centrifugally separated immiscible liquids of different densities in a 45° tilted rotating tube offer scope for avoiding their use. Micron to submicron size topological flow regimes in the thin films induce high inter-phase mass transfer depending on the nature of the two liquids. A hemispherical base tube creates a Coriolis force as a 'spinning top' (ST) topological fluid flow in the less dense liquid which penetrates the denser layer of liquid, delivering liquid from the upper layer through the lower layer to the surface of the tube with the thickness of the layers determined using neutron imaging. Similarly, double helical (DH) topological flow in the less dense liquid, arising from Faraday wave eddy currents twisted by Coriolis forces, impact through the less dense liquid onto the surface of the tube. The lateral dimensions of these topological flows have been determined using 'molecular drilling' impacting on a thin layer of polysulfone on the surface of the tube and self-assembly of nanoparticles at the interface of the two liquids. At high rotation speeds, DH flow also occurs in the denser layer, with a critical rotational speed reached resulting in rapid phase demixing of preformed emulsions of two immiscible liquids. ST flow is perturbed relative to double helical flow by changing the shape of the base of the tube while maintaining high mass transfer between phases as demonstrated by circumventing the need for phase transfer catalysts. The findings presented here have implications for overcoming mass transfer limitations at interfaces of liquids, and provide new methods for extractions and separation science, and avoiding the formation of emulsions., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
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- 2022
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18. A fairer way to compare researchers at any career stage and in any discipline using open-access citation data.
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Bradshaw CJA, Chalker JM, Crabtree SA, Eijkelkamp BA, Long JA, Smith JR, Trinajstic K, and Weisbecker V
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- Algorithms, Female, Humans, Male, Sex Characteristics, Access to Information, Career Mobility, Publications, Research Personnel
- Abstract
The pursuit of simple, yet fair, unbiased, and objective measures of researcher performance has occupied bibliometricians and the research community as a whole for decades. However, despite the diversity of available metrics, most are either complex to calculate or not readily applied in the most common assessment exercises (e.g., grant assessment, job applications). The ubiquity of metrics like the h-index (h papers with at least h citations) and its time-corrected variant, the m-quotient (h-index ÷ number of years publishing) therefore reflect the ease of use rather than their capacity to differentiate researchers fairly among disciplines, career stage, or gender. We address this problem here by defining an easily calculated index based on publicly available citation data (Google Scholar) that corrects for most biases and allows assessors to compare researchers at any stage of their career and from any discipline on the same scale. Our ε'-index violates fewer statistical assumptions relative to other metrics when comparing groups of researchers, and can be easily modified to remove inherent gender biases in citation data. We demonstrate the utility of the ε'-index using a sample of 480 researchers with Google Scholar profiles, stratified evenly into eight disciplines (archaeology, chemistry, ecology, evolution and development, geology, microbiology, ophthalmology, palaeontology), three career stages (early, mid-, late-career), and two genders. We advocate the use of the ε'-index whenever assessors must compare research performance among researchers of different backgrounds, but emphasize that no single index should be used exclusively to rank researcher capability., Competing Interests: The authors declare no competing interests.
- Published
- 2021
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19. Carbonisation of a polymer made from sulfur and canola oil.
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Mann M, Luo X, Tikoalu AD, Gibson CT, Yin Y, Al-Attabi R, Andersson GG, Raston CL, Henderson LC, Pring A, Hasell T, and Chalker JM
- Abstract
A polymer made from equal masses of sulfur and canola oil was carbonised at 600 °C for 30 minutes. The resulting material exhibited improved uptake of mercury from water compared to the polymer. The carbonisation could also be done after using the polymer to clean up oil spills, which suprisingly improved mercury uptake to levels rivaling commercial carbons.
- Published
- 2021
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20. Reaction of [ 18 F]Fluoride at Heteroatoms and Metals for Imaging of Peptides and Proteins by Positron Emission Tomography.
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Scroggie KR, Perkins MV, and Chalker JM
- Abstract
The ability to radiolabel proteins with [
18 F]fluoride enables the use of positron emission tomography (PET) for the early detection, staging and diagnosis of disease. The direct fluorination of native proteins through C-F bond formation is, however, a difficult task. The aqueous environments required by proteins severely hampers fluorination yields while the dry, organic solvents that promote nucleophilic fluorination can denature proteins. To circumvent these issues, indirect fluorination methods making use of prosthetic groups that are first fluorinated and then conjugated to a protein have become commonplace. But, when it comes to the radiofluorination of proteins, these indirect methods are not always suited to the short half-life of the fluorine-18 radionuclide (110 min). This review explores radiofluorination through bond formation with fluoride at boron, metal complexes, silicon, phosphorus and sulfur. The potential for these techniques to be used for the direct, aqueous radiolabeling of proteins with [18 F]fluoride is discussed., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Scroggie, Perkins and Chalker.)- Published
- 2021
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21. Insulating Composites Made from Sulfur, Canola Oil, and Wool*.
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Bu Najmah I, Lundquist NA, Stanfield MK, Stojcevski F, Campbell JA, Esdaile LJ, Gibson CT, Lewis DA, Henderson LC, Hasell T, and Chalker JM
- Abstract
An insulating composite was made from the sustainable building blocks wool, sulfur, and canola oil. In the first stage of the synthesis, inverse vulcanization was used to make a polysulfide polymer from the canola oil triglyceride and sulfur. This polymerization benefits from complete atom economy. In the second stage, the powdered polymer was mixed with wool, coating the fibers through electrostatic attraction. The polymer and wool mixture were then compressed with mild heating to provoke S-S metathesis in the polymer, which locks the wool in the polymer matrix. The wool fibers imparted tensile strength, insulating properties, and reduced the flammability of the composite. All building blocks are sustainable or derived from waste and the composite is a promising lead on next-generation insulation for energy conservation., (© 2021 Wiley-VCH GmbH.)
- Published
- 2021
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22. Sub-micron moulding topological mass transport regimes in angled vortex fluidic flow.
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Alharbi TMD, Jellicoe M, Luo X, Vimalanathan K, Alsulami IK, Al Harbi BS, Igder A, Alrashaidi FAJ, Chen X, Stubbs KA, Chalker JM, Zhang W, Boulos RA, Jones DB, Quinton JS, and Raston CL
- Abstract
Shear stress in dynamic thin films, as in vortex fluidics, can be harnessed for generating non-equilibrium conditions, but the nature of the fluid flow is not understood. A rapidly rotating inclined tube in the vortex fluidic device (VFD) imparts shear stress (mechanical energy) into a thin film of liquid, depending on the physical characteristics of the liquid and rotational speed, ω , tilt angle, θ , and diameter of the tube. Through understanding that the fluid exhibits resonance behaviours from the confining boundaries of the glass surface and the meniscus that determines the liquid film thickness, we have established specific topological mass transport regimes. These topologies have been established through materials processing, as spinning top flow normal to the surface of the tube, double-helical flow across the thin film, and spicular flow, a transitional region where both effects contribute. The manifestation of mass transport patterns within the film have been observed by monitoring the mixing time, temperature profile, and film thickness against increasing rotational speed, ω . In addition, these flow patterns have unique signatures that enable the morphology of nanomaterials processed in the VFD to be predicted, for example in reversible scrolling and crumbling graphene oxide sheets. Shear-stress induced recrystallisation, crystallisation and polymerisation, at different rotational speeds, provide moulds of high-shear topologies, as 'positive' and 'negative' spicular flow behaviour. 'Molecular drilling' of holes in a thin film of polysulfone demonstrate spatial arrangement of double-helices. The grand sum of the different behavioural regimes is a general fluid flow model that accounts for all processing in the VFD at an optimal tilt angle of 45°, and provides a new concept in the fabrication of novel nanomaterials and controlling the organisation of matter., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2021
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23. A critical evaluation of probes for cysteine sulfenic acid.
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Pople JMM and Chalker JM
- Subjects
- Cysteine metabolism, Humans, Oxidation-Reduction, Cysteine analogs & derivatives, Molecular Probes metabolism, Sulfenic Acids metabolism
- Abstract
Cysteine oxidation is important in cellular redox regulation, signaling, and biocatalysis. To understand the biological relevance of cysteine oxidation, it is desirable to identify the proteins involved, the site of the oxidized cysteine, and the relevant oxidation states. Because the thiol of cysteine can be converted to a wide range of oxidation states, mapping these oxidative modifications is challenging. The dynamic and reversible nature of many cysteine oxidation states compounds the difficulty in such proteomic analyses. In this review, we examine methods to detect cysteine sulfenic acid - a particularly challenging functional group to analyze because of its reactive nature. We focus on the selectivity of recently reported probes and discuss some challenges and opportunities in this field., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
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- 2021
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24. Azide-alkyne cycloadditions in a vortex fluidic device: enhanced "on water" effects and catalysis in flow.
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Oksdath-Mansilla G, Kucera RL, Chalker JM, and Raston CL
- Abstract
The Vortex Fluidic Device is a flow reactor that processes reactions in thin films. Running the metal-free azide-alkyne cycloaddition in this reactor revealed a dramatic enhancement of the "on water" effect. For the copper-catalyzed azide-alkyne cycloaddition, stainless steel or copper jet feeds were effective reservoirs of active copper catalyst.
- Published
- 2021
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25. Reactive Compression Molding Post-Inverse Vulcanization: A Method to Assemble, Recycle, and Repurpose Sulfur Polymers and Composites.
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Lundquist NA, Tikoalu AD, Worthington MJH, Shapter R, Tonkin SJ, Stojcevski F, Mann M, Gibson CT, Gascooke JR, Karton A, Henderson LC, Esdaile LJ, and Chalker JM
- Abstract
Inverse vulcanization provides dynamic and responsive materials made from elemental sulfur and unsaturated cross-linkers. These polymers have been used in a variety of applications such as energy storage, infrared optics, repairable materials, environmental remediation, and precision fertilizers. In spite of these advances, there is a need for methods to recycle and reprocess these polymers. In this study, polymers prepared by inverse vulcanization are shown to undergo reactive compression molding. In this process, the reactive interfaces of sulfur polymers are brought into contact by mechanical compression. Upon heating these molds at relatively low temperatures (≈100 °C), chemical bonding occurs at the polymer interfaces by S-S metathesis. This method of processing is distinct from previous studies on inverse vulcanization because the polymers examined in this study do not form a liquid phase when heated. Neither compression nor heating alone was sufficient to mold these polymers into new architectures, so this is a new concept in the manipulation of sulfur polymers. Additionally, high-level ab initio calculations revealed that the weakest S-S bond in organic polysulfides decreases linearly in strength from a sulfur rank of 2 to 4, but then remains constant at about 100 kJ mol
-1 for higher sulfur rank. This is critical information in engineering these polymers for S-S metathesis. Guided by this insight, polymer repair, recycling, and repurposing into new composites was demonstrated., (© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2020
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26. Chemically induced repair, adhesion, and recycling of polymers made by inverse vulcanization.
- Author
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Tonkin SJ, Gibson CT, Campbell JA, Lewis DA, Karton A, Hasell T, and Chalker JM
- Abstract
Inverse vulcanization is a copolymerization of elemental sulfur and alkenes that provides unique materials with high sulfur content (typically ≥50% sulfur by mass). These polymers contain a dynamic and reactive polysulfide network that creates many opportunities for processing, assembly, and repair that are not possible with traditional plastics, rubbers and thermosets. In this study, we demonstrate that two surfaces of these sulfur polymers can be chemically joined at room temperature through a phosphine or amine-catalyzed exchange of the S-S bonds in the polymer. When the nucleophile is pyridine or triethylamine, we show that S-S metathesis only occurs at room temperature for a sulfur rank > 2-an important discovery for the design of polymers made by inverse vulcanization. This mechanistic understanding of the S-S metathesis was further supported with small molecule crossover experiments in addition to computational studies. Applications of this chemistry in latent adhesives, additive manufacturing, polymer repair, and recycling are also presented., (This journal is © The Royal Society of Chemistry 2020.)
- Published
- 2020
- Full Text
- View/download PDF
27. Proteome-Wide Survey of Cysteine Oxidation by Using a Norbornene Probe.
- Author
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Alcock LJ, Langini M, Stühler K, Remke M, Perkins MV, Bernardes GJL, and Chalker JM
- Subjects
- HeLa Cells, Humans, Oxidation-Reduction, Proteome analysis, Signal Transduction, Cysteine analogs & derivatives, Cysteine chemistry, Norbornanes chemistry, Oxidative Stress, Proteome metabolism, Sulfenic Acids chemistry
- Abstract
Rapid detection of cysteine oxidation in living cells is critical in advancing our understanding of responses to reactive oxygen species (ROS) and oxidative stress. Accordingly, there is a need to develop chemical probes that facilitate proteome-wide detection of cysteine's many oxidation states. Herein, we report the first whole-cell proteomics analysis using a norbornene probe to detect the initial product of cysteine oxidation: cysteine sulfenic acid. The oxidised proteins identified in the HeLa cell model represent the first targets of the ROS hydrogen peroxide. The panel of protein hits provides new and important information about the targets of oxidative stress, including 148 new protein members of the sulfenome. These findings provide new leads for the study and understanding of redox signalling and diseases associated with oxidative stress., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2020
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- View/download PDF
28. Crosslinker Copolymerization for Property Control in Inverse Vulcanization.
- Author
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Smith JA, Green SJ, Petcher S, Parker DJ, Zhang B, Worthington MJH, Wu X, Kelly CA, Baker T, Gibson CT, Campbell JA, Lewis DA, Jenkins MJ, Willcock H, Chalker JM, and Hasell T
- Abstract
Sulfur is an underused by-product of the petrochemicals industry. Recent research into inverse vulcanization has shown how this excess sulfur can be transformed into functional polymers, by stabilization with organic crosslinkers. For these interesting new materials to realize their potential for applications, more understanding and control of their physical properties is needed. Here we report four new terpolymers prepared from sulfur and two distinct alkene monomers that can be predictively tuned in glass transition, molecular weight, solubility, mechanical properties, and color., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2019
- Full Text
- View/download PDF
29. Synthesis and Applications of Polymers Made by Inverse Vulcanization.
- Author
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Chalker JM, Worthington MJH, Lundquist NA, and Esdaile LJ
- Subjects
- Cross-Linking Reagents chemistry, Electrodes, Environmental Restoration and Remediation methods, Metals, Heavy isolation & purification, Optical Devices, Polymers chemistry, Sulfur Compounds chemistry, Chemistry Techniques, Synthetic methods, Polymerization, Polymers chemical synthesis, Sulfur chemistry, Sulfur Compounds chemical synthesis
- Abstract
Elemental sulfur is an abundant and inexpensive chemical feedstock, yet it is underused as a starting material in chemical synthesis. Recently, a process coined inverse vulcanization was introduced in which elemental sulfur is converted into polymers by ring-opening polymerization, followed by cross-linking with an unsaturated organic molecule such as a polyene. The resulting materials have high sulfur content (typically 50-90% sulfur by mass) and display a range of interesting properties such as dynamic S-S bonds, redox activity, high refractive indices, mid-wave IR transparency, and heavy metal affinity. These properties have led to a swell of applications of these polymers in repairable materials, energy generation and storage, optical devices, and environmental remediation. This article will discuss the synthesis of polymers by inverse vulcanization and review case studies on their diverse applications. An outlook is also presented to discuss future opportunities and challenges for further advancement of polymers made by inverse vulcanization.
- Published
- 2019
- Full Text
- View/download PDF
30. Norbornene Probes for the Detection of Cysteine Sulfenic Acid in Cells.
- Author
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Alcock LJ, Oliveira BL, Deery MJ, Pukala TL, Perkins MV, Bernardes GJL, and Chalker JM
- Subjects
- Cysteine analysis, Oxidation-Reduction, Cysteine analogs & derivatives, Molecular Probes chemistry, Norbornanes chemistry, Sulfenic Acids analysis
- Abstract
Norbornene derivatives were validated as probes for cysteine sulfenic acid on proteins and in live cells. Trapping sulfenic acids with norbornene probes is highly selective and revealed a different reactivity profile than the traditional dimedone reagent. The norbornene probe also revealed a superior chemoselectivity when compared to a commonly used dimedone probe. Together, these results advance the study of cysteine oxidation in biological systems.
- Published
- 2019
- Full Text
- View/download PDF
31. Sulfur polymer composites as controlled-release fertilisers.
- Author
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Mann M, Kruger JE, Andari F, McErlean J, Gascooke JR, Smith JA, Worthington MJH, McKinley CCC, Campbell JA, Lewis DA, Hasell T, Perkins MV, and Chalker JM
- Abstract
Sulfur polymer composites were prepared by the reaction of canola oil and elemental sulfur in the presence of the NPK fertiliser components ammonium sulfate, calcium hydrogen phosphate, and potassium chloride. These composites released nutrients in a controlled fashion, resulting in less wasted fertiliser and better health for potted tomato plants when compared to free NPK.
- Published
- 2019
- Full Text
- View/download PDF
32. Chemoselective and Continuous Flow Hydrogenations in Thin Films Using a Palladium Nanoparticle Catalyst Embedded in Cellulose Paper.
- Author
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Phillips JM, Ahamed M, Duan X, Lamb RN, Qu X, Zheng K, Zou J, Chalker JM, and Raston CL
- Abstract
Cellulose immobilized palladium (0) nanoparticles (PdNPs) were prepared for the use in scalable catalytic reactions in flow. Preparation of the catalyst is remarkably simple and fast, where a palladium acetate solution is drop-casted onto cellulose paper and then exposed to 1 atm of hydrogen for a mere 90 s to produce embedded Pd(0) nanoparticles. This catalyst system is efficient in the hydrogenation of alkenes, nitroarenes, ketones, and enamides, with products formed in high yields, under ambient pressure and temperature. The system is also effective for transfer hydrogenation using ammonium formate as an alternative hydrogen source. A high catalyst stability and reusability are demonstrated along with the chemoselective and scalable synthesis of industrially important fine chemicals, including the biobased molecule cyrene.
- Published
- 2019
- Full Text
- View/download PDF
33. The Mercury Problem in Artisanal and Small-Scale Gold Mining.
- Author
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Esdaile LJ and Chalker JM
- Abstract
Mercury-dependent artisanal and small-scale gold mining (ASGM) is the largest source of mercury pollution on Earth. In this practice, elemental mercury is used to extract gold from ore as an amalgam. The amalgam is typically isolated by hand and then heated-often with a torch or over a stove-to distill the mercury and isolate the gold. Mercury release from tailings and vaporized mercury exceed 1000 tonnes each year from ASGM. The health effects on the miners are dire, with inhaled mercury leading to neurological damage and other health issues. The communities near these mines are also affected due to mercury contamination of water and soil and subsequent accumulation in food staples, such as fish-a major source of dietary protein in many ASGM regions. The risks to children are also substantial, with mercury emissions from ASGM resulting in both physical and mental disabilities and compromised development. Between 10 and 19 million people use mercury to mine for gold in more than 70 countries, making mercury pollution from ASGM a global issue. With the Minamata Convention on Mercury entering force this year, there is political motivation to help overcome the problem of mercury in ASGM. In this effort, chemists can play a central role. Here, the problem of mercury in ASGM is reviewed with a discussion on how the chemistry community can contribute solutions. Introducing portable and low-cost mercury sensors, inexpensive and scalable remediation technologies, novel methods to prevent mercury uptake in fish and food crops, and efficient and easy-to-use mercury-free mining techniques are all ways in which the chemistry community can help. To meet these challenges, it is critical that new technologies or techniques are low-cost and adaptable to the remote and under-resourced areas in which ASGM is most common. The problem of mercury pollution in ASGM is inherently a chemistry problem. We therefore encourage the chemistry community to consider and address this issue that affects the health of millions of people., (© 2018 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)
- Published
- 2018
- Full Text
- View/download PDF
34. Chemo- and Regioselective Lysine Modification on Native Proteins.
- Author
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Matos MJ, Oliveira BL, Martínez-Sáez N, Guerreiro A, Cal PMSD, Bertoldo J, Maneiro M, Perkins E, Howard J, Deery MJ, Chalker JM, Corzana F, Jiménez-Osés G, and Bernardes GJL
- Subjects
- Acrylates chemical synthesis, Acrylates chemistry, Hep G2 Cells, Humans, Molecular Structure, Stereoisomerism, Computer-Aided Design, Lysine chemistry, Proteins chemistry
- Abstract
Site-selective chemical conjugation of synthetic molecules to proteins expands their functional and therapeutic capacity. Current protein modification methods, based on synthetic and biochemical technologies, can achieve site selectivity, but these techniques often require extensive sequence engineering or are restricted to the N- or C-terminus. Here we show the computer-assisted design of sulfonyl acrylate reagents for the modification of a single lysine residue on native protein sequences. This feature of the designed sulfonyl acrylates, together with the innate and subtle reactivity differences conferred by the unique local microenvironment surrounding each lysine, contribute to the observed regioselectivity of the reaction. Moreover, this site selectivity was predicted computationally, where the lysine with the lowest p K
a was the kinetically favored residue at slightly basic pH. Chemoselectivity was also observed as the reagent reacted preferentially at lysine, even in those cases when other nucleophilic residues such as cysteine were present. The reaction is fast and proceeds using a single molar equivalent of the sulfonyl acrylate reagent under biocompatible conditions (37 °C, pH 8.0). This technology was demonstrated by the quantitative and irreversible modification of five different proteins including the clinically used therapeutic antibody Trastuzumab without prior sequence engineering. Importantly, their native secondary structure and functionality is retained after the modification. This regioselective lysine modification method allows for further bioconjugation through aza-Michael addition to the acrylate electrophile that is generated by spontaneous elimination of methanesulfinic acid upon lysine labeling. We showed that a protein-antibody conjugate bearing a site-specifically installed fluorophore at lysine could be used for selective imaging of apoptotic cells and detection of Her2+ cells, respectively. This simple, robust method does not require genetic engineering and may be generally used for accessing diverse, well-defined protein conjugates for basic biology and therapeutic studies.- Published
- 2018
- Full Text
- View/download PDF
35. Polysulfides made from re-purposed waste are sustainable materials for removing iron from water.
- Author
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Lundquist NA, Worthington MJH, Adamson N, Gibson CT, Johnston MR, Ellis AV, and Chalker JM
- Abstract
Water contaminated with Fe
3+ is undesirable because it can result in discoloured plumbing fixtures, clogging, and a poor taste and aesthetic profile for drinking water. At high levels, Fe3+ can also promote the growth of unwanted bacteria, so environmental agencies and water authorities typically regulate the amount of Fe3+ in municipal water and wastewater. Here, polysulfide sorbents-prepared from elemental sulfur and unsaturated cooking oils-are used to remove Fe3+ contaminants from water. The sorbent is low-cost and sustainable, as it can be prepared entirely from waste. The preparation of this material using microwave heating and its application in iron capture are two important advances in the growing field of sulfur polymers., Competing Interests: Two authors (M. J. H. W. and J. M. C.) are inventors on a patent associated with the synthesis and applications of the canola oil polysulfide material (Patent No. WO 2017181217)., (This journal is © The Royal Society of Chemistry.)- Published
- 2018
- Full Text
- View/download PDF
36. Chemical methods for mapping cysteine oxidation.
- Author
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Alcock LJ, Perkins MV, and Chalker JM
- Subjects
- Animals, Cysteine analysis, Humans, Oxidation-Reduction, S-Nitrosothiols chemistry, Cysteine analogs & derivatives, Cysteine chemistry, S-Nitrosothiols analysis
- Abstract
Cysteine residues in proteins are subject to diverse redox chemistry. Oxidation of cysteine to S-nitrosocysteine, cysteine sulfenic and sulfinic acids, disulfides and persulfides are a few prominent examples of these oxidative post-translational modifications. In living organisms, these modifications often play key roles in cell signalling and protein function, but a full account of this biochemistry is far from complete. It is therefore an important goal in chemical biology to identify what proteins are subjected to these modifications and understand their physiological function. This review provides an overview of these modifications, how they can be detected and quantified using chemical probes, and how this information provides insight into their role in biology. This survey also highlights future opportunities in the study of cysteine redox chemistry, the challenges that await chemists and biologists in this area of study, and how meeting such challenges might reveal valuable information for biomedical science.
- Published
- 2018
- Full Text
- View/download PDF
37. Precise Probing of Residue Roles by Post-Translational β,γ-C,N Aza-Michael Mutagenesis in Enzyme Active Sites.
- Author
-
Dadová J, Wu KJ, Isenegger PG, Errey JC, Bernardes GJL, Chalker JM, Raich L, Rovira C, and Davis BG
- Abstract
Biomimicry valuably allows the understanding of the essential chemical components required to recapitulate biological function, yet direct strategies for evaluating the roles of amino acids in proteins can be limited by access to suitable, subtly-altered unnatural variants. Here we describe a strategy for dissecting the role of histidine residues in enzyme active sites using unprecedented, chemical, post-translational side-chain-β,γ C-N bond formation. Installation of dehydroalanine (as a "tag") allowed the testing of nitrogen conjugate nucleophiles in "aza-Michael"-1,4-additions (to "modify"). This allowed the creation of a regioisomer of His (iso-His, His
iso ) linked instead through its pros-Nπ atom rather than naturally linked via C4, as well as an aza-altered variant aza-Hisiso . The site-selective generation of these unnatural amino acids was successfully applied to probe the contributing roles (e.g., size, H-bonding) of His residues toward activity in the model enzymes subtilisin protease from Bacillus lentus and Mycobacterium tuberculosis pantothenate synthetase.- Published
- 2017
- Full Text
- View/download PDF
38. Laying Waste to Mercury: Inexpensive Sorbents Made from Sulfur and Recycled Cooking Oils.
- Author
-
Worthington MJH, Kucera RL, Albuquerque IS, Gibson CT, Sibley A, Slattery AD, Campbell JA, Alboaiji SFK, Muller KA, Young J, Adamson N, Gascooke JR, Jampaiah D, Sabri YM, Bhargava SK, Ippolito SJ, Lewis DA, Quinton JS, Ellis AV, Johs A, Bernardes GJL, and Chalker JM
- Subjects
- Adsorption, Air Pollutants chemistry, Calorimetry, Differential Scanning, Polymers chemical synthesis, Polymers chemistry, Recycling, Soil Pollutants chemistry, Surface Properties, Thermogravimetry, Water Pollutants, Chemical chemistry, Mercury chemistry, Plant Oils chemistry, Sulfur chemistry
- Abstract
Mercury pollution threatens the environment and human health across the globe. This neurotoxic substance is encountered in artisanal gold mining, coal combustion, oil and gas refining, waste incineration, chloralkali plant operation, metallurgy, and areas of agriculture in which mercury-rich fungicides are used. Thousands of tonnes of mercury are emitted annually through these activities. With the Minamata Convention on Mercury entering force this year, increasing regulation of mercury pollution is imminent. It is therefore critical to provide inexpensive and scalable mercury sorbents. The research herein addresses this need by introducing low-cost mercury sorbents made solely from sulfur and unsaturated cooking oils. A porous version of the polymer was prepared by simply synthesising the polymer in the presence of a sodium chloride porogen. The resulting material is a rubber that captures liquid mercury metal, mercury vapour, inorganic mercury bound to organic matter, and highly toxic alkylmercury compounds. Mercury removal from air, water and soil was demonstrated. Because sulfur is a by-product of petroleum refining and spent cooking oils from the food industry are suitable starting materials, these mercury-capturing polymers can be synthesised entirely from waste and supplied on multi-kilogram scales. This study is therefore an advance in waste valorisation and environmental chemistry., (© 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)
- Published
- 2017
- Full Text
- View/download PDF
39. Posttranslational mutagenesis: A chemical strategy for exploring protein side-chain diversity.
- Author
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Wright TH, Bower BJ, Chalker JM, Bernardes GJ, Wiewiora R, Ng WL, Raj R, Faulkner S, Vallée MR, Phanumartwiwath A, Coleman OD, Thézénas ML, Khan M, Galan SR, Lercher L, Schombs MW, Gerstberger S, Palm-Espling ME, Baldwin AJ, Kessler BM, Claridge TD, Mohammed S, and Davis BG
- Subjects
- Alanine chemistry, Alanine genetics, Bromus chemistry, Genetic Code, Glycosylation, Iodine chemistry, Mutagenesis, Peptides chemistry, Peptides genetics, Proteins genetics, Alanine analogs & derivatives, Carbon chemistry, Free Radicals chemistry, Protein Engineering methods, Protein Processing, Post-Translational, Proteins chemistry
- Abstract
Posttranslational modification of proteins expands their structural and functional capabilities beyond those directly specified by the genetic code. However, the vast diversity of chemically plausible (including unnatural but functionally relevant) side chains is not readily accessible. We describe C (sp
3 )-C (sp3 ) bond-forming reactions on proteins under biocompatible conditions, which exploit unusual carbon free-radical chemistry, and use them to form Cβ-Cγ bonds with altered side chains. We demonstrate how these transformations enable a wide diversity of natural, unnatural, posttranslationally modified (methylated, glycosylated, phosphorylated, hydroxylated), and labeled (fluorinated, isotopically labeled) side chains to be added to a common, readily accessible dehydroalanine precursor in a range of representative protein types and scaffolds. This approach, outside of the rigid constraints of the ribosome and enzymatic processing, may be modified more generally for access to diverse proteins., (Copyright © 2016, American Association for the Advancement of Science.)- Published
- 2016
- Full Text
- View/download PDF
40. Sulfur-Limonene Polysulfide: A Material Synthesized Entirely from Industrial By-Products and Its Use in Removing Toxic Metals from Water and Soil.
- Author
-
Crockett MP, Evans AM, Worthington MJ, Albuquerque IS, Slattery AD, Gibson CT, Campbell JA, Lewis DA, Bernardes GJ, and Chalker JM
- Subjects
- Chromatography, Gel, Limonene, Microscopy, Electron, Scanning, Cyclohexenes chemistry, Metals isolation & purification, Soil Pollutants isolation & purification, Sulfides chemistry, Sulfur chemistry, Terpenes chemistry, Water Pollutants, Chemical isolation & purification
- Abstract
A polysulfide material was synthesized by the direct reaction of sulfur and d-limonene, by-products of the petroleum and citrus industries, respectively. The resulting material was processed into functional coatings or molded into solid devices for the removal of palladium and mercury salts from water and soil. The binding of mercury(II) to the sulfur-limonene polysulfide resulted in a color change. These properties motivate application in next-generation environmental remediation and mercury sensing., (© 2015 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)
- Published
- 2016
- Full Text
- View/download PDF
41. Rapid Vortex Fluidics: Continuous Flow Synthesis of Amides and Local Anesthetic Lidocaine.
- Author
-
Britton J, Chalker JM, and Raston CL
- Subjects
- Acylation, Chemistry Techniques, Synthetic economics, Equipment Design, Time Factors, Amides chemical synthesis, Anesthetics, Local chemical synthesis, Chemistry Techniques, Synthetic instrumentation, Lidocaine chemical synthesis
- Abstract
Thin film flow chemistry using a vortex fluidic device (VFD) is effective in the scalable acylation of amines under shear, with the yields of the amides dramatically enhanced relative to traditional batch techniques. The optimized monophasic flow conditions are effective in ≤80 seconds at room temperature, enabling access to structurally diverse amides, functionalized amino acids and substituted ureas on multigram scales. Amide synthesis under flow was also extended to a total synthesis of local anesthetic lidocaine, with sequential reactions carried out in two serially linked VFD units. The synthesis could also be executed in a single VFD, in which the tandem reactions involve reagent delivery at different positions along the rapidly rotating tube with in situ solvent replacement, as a molecular assembly line process. This further highlights the versatility of the VFD in organic synthesis, as does the finding of a remarkably efficient debenzylation of p-methoxybenzyl amines., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2015
- Full Text
- View/download PDF
42. Halide inhibition of the copper-catalysed azide-alkyne cycloaddition.
- Author
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Moorman RM, Collier MB, Frohock BH, Womble MD, and Chalker JM
- Abstract
Chloride, bromide and iodide are inhibitors of the copper-catalysed azide-alkyne cycloaddition, with iodide exhibiting the most detrimental effects on rates and yields. A study of this inhibition is presented, along with experimental protocols to accommodate the presence of halides in this widely used reaction.
- Published
- 2015
- Full Text
- View/download PDF
43. Allyl sulphides in olefin metathesis: catalyst considerations and traceless promotion of ring-closing metathesis.
- Author
-
Edwards GA, Culp PA, and Chalker JM
- Subjects
- Catalysis, Cyclization, Magnetic Resonance Spectroscopy, Molecular Structure, Ruthenium chemistry, Alkenes chemistry, Allyl Compounds chemistry, Sulfides chemistry
- Abstract
Allyl sulphides are reactive substrates in ruthenium-catalysed olefin metathesis reactions, provided each substrate is matched with a suitable catalyst. A profile of catalyst activity is described, along with the first demonstration of allyl sulphides as traceless promoters in relayed ring-closing metathesis reactions.
- Published
- 2015
- Full Text
- View/download PDF
44. Melamine and melamine-formaldehyde polymers as ligands for palladium and application to Suzuki-Miyaura cross-coupling reactions in sustainable solvents.
- Author
-
Edwards GA, Trafford MA, Hamilton AE, Buxton AM, Bardeaux MC, and Chalker JM
- Abstract
The Suzuki-Miyaura cross-coupling reaction is a foundation stone of modern organic synthesis, as evidenced by its widespread use in the preparation of pharmaceuticals, agrochemicals, polymers, and other functional materials. With the prevalence of this venerable reaction in industrial synthesis, it is prudent to ensure its application adheres to the tenets of green chemistry. The introduction of cross-coupling catalysts that are active in sustainable solvents is therefore an important endeavor. In this report, a melamine-palladium complex is introduced as a versatile catalyst for the Suzuki-Miyaura cross-coupling reaction. This catalyst is soluble and active in both water and the renewable organic solvent ethyl lactate. The melamine-palladium catalyst can also be cross-linked by reaction with formaldehyde to generate an insoluble polymeric catalyst that can be recovered after the cross-coupling. The melamine-palladium system is inexpensive, easy to handle, bench-stable, and effective in catalysis in the presence of a variety of impurities (high cross-coupling yields were obtained in reactions run in unfiltered river water to illustrate this final point). Additionally, investigations reported herein revealed an intriguing relationship between catalytic efficiency and the base employed in the cross-coupling reaction. Implications for the mechanism of transmetalation in aqueous Suzuki-Miyaura cross-coupling reaction are discussed.
- Published
- 2014
- Full Text
- View/download PDF
45. Facile preparation of ammonium alginate-derived nanofibers carrying diverse therapeutic cargo.
- Author
-
Pegg CE, Jones GH, Athauda TJ, Ozer RR, and Chalker JM
- Subjects
- Alginates chemical synthesis, Ammonium Compounds chemical synthesis, Drug Delivery Systems, Glucuronic Acid chemical synthesis, Glucuronic Acid chemistry, Hexuronic Acids chemical synthesis, Hexuronic Acids chemistry, Models, Molecular, Nanofibers ultrastructure, Wound Healing, Alginates chemistry, Ammonium Compounds chemistry, Nanofibers chemistry
- Abstract
Alginic acid was converted to a variety of ammonium alginate derivatives carrying diverse chemical cargo such as analgesics, antibiotics, and enzymes. These functional polymers could be fashioned into nanofibrous mats by electrostatic spinning. The therapeutic payload could be released in functional form by a simple ion exchange mechanism. Prospects in wound healing are discussed.
- Published
- 2014
- Full Text
- View/download PDF
46. Prospects in the total synthesis of protein therapeutics.
- Author
-
Chalker JM
- Subjects
- Cysteine chemistry, Erythropoietin chemical synthesis, Humans, Interferon-beta chemical synthesis, Parathyroid Hormone chemical synthesis, Peptides chemistry, Peptides metabolism, Serine chemistry, Proteins chemical synthesis
- Abstract
Protein therapeutics are gaining headway in the treatment and prevention of a variety of maladies. Critical to the success and growing use of biologic-level pharmaceuticals is the development of methods for their precise synthesis. This review highlights the emerging techniques for the total synthesis of proteins, with a special focus on the possibility of accessing therapeutic targets through chemoselective peptide ligations., (© 2012 John Wiley & Sons A/S.)
- Published
- 2013
- Full Text
- View/download PDF
47. Conversion of cysteine into dehydroalanine enables access to synthetic histones bearing diverse post-translational modifications.
- Author
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Chalker JM, Lercher L, Rose NR, Schofield CJ, and Davis BG
- Subjects
- Alanine chemistry, Alanine genetics, Alanine metabolism, Alkylation, Cysteine genetics, Cysteine metabolism, Histones genetics, Histones metabolism, Humans, Models, Molecular, Protein Conformation, Protein Processing, Post-Translational, Alanine analogs & derivatives, Cysteine chemistry, Histones chemistry
- Published
- 2012
- Full Text
- View/download PDF
48. Synthesis of (-)-α-kainic acid via TMSCl-promoted Pd-catalyzed zinc-ene cyclization of an allyl acetate.
- Author
-
Wei G, Chalker JM, and Cohen T
- Subjects
- Catalysis, Cyclization, Organometallic Compounds chemistry, Acetates chemistry, Allyl Compounds chemistry, Chemistry Techniques, Synthetic methods, Kainic Acid chemical synthesis, Kainic Acid chemistry, Palladium chemistry, Trimethylsilyl Compounds chemistry, Zinc chemistry
- Abstract
A highly practical synthesis of enantiopure (-)-α-kainic acid is accomplished in 37% overall yield, using 13 linear steps and a minimum of chromatographic separations via an unprecedented TMSCl-promoted palladium-catalyzed zinc-ene cyclization of an allyl acetate.
- Published
- 2011
- Full Text
- View/download PDF
49. A "tag-and-modify" approach to site-selective protein modification.
- Author
-
Chalker JM, Bernardes GJ, and Davis BG
- Subjects
- Alanine analogs & derivatives, Alanine chemistry, Alkynes chemistry, Azides chemistry, Catalysis, Copper chemistry, Cysteine chemistry, Cysteine metabolism, Disulfides chemistry, Free Radicals chemistry, Glycosylation, Palladium chemistry, Protein Prenylation, Proteins metabolism, Ruthenium chemistry, Proteins chemistry
- Abstract
Covalent modification can expand a protein's functional capacity. Fluorescent or radioactive labeling, for instance, allows imaging of a protein in real time. Labeling with an affinity probe enables isolation of target proteins and other interacting molecules. At the other end of this functional spectrum, protein structures can be naturally altered by enzymatic action. Protein-protein interactions, genetic regulation, and a range of cellular processes are under the purview of these post-translational modifications. The ability of protein chemists to install these covalent additions selectively has been critical for elucidating their roles in biology. Frequently the transformations must be applied in a site-specific manner, which demands the most selective chemistry. In this Account, we discuss the development and application of such chemistry in our laboratory. A centerpiece of our strategy is a "tag-and-modify" approach, which entails sequential installation of a uniquely reactive chemical group into the protein (the "tag") and the selective or specific modification of this group. The chemical tag can be a natural or unnatural amino acid residue. Of the natural residues, cysteine is the most widely used as a tag. Early work in our program focused on selective disulfide formation in the synthesis of glycoproteins. For certain applications, the susceptibility of disulfides to reduction was a limitation and prompted the development of several methods for the synthesis of more stable thioether modifications. The desulfurization of disulfides and conjugate addition to dehydroalanine are two routes to these modifications. The dehydroalanine tag has since proven useful as a general precursor to many modifications after conjugate addition of various nucleophiles; phosphorylated, glycosylated, peptidylated, prenylated, and even mimics of methylated and acetylated lysine-containing proteins are all accessible from dehydroalanine. While cysteine is a useful tag for selective modification, unnatural residues present the opportunity for bio-orthogonal chemistry. Azide-, arylhalide-, alkyne-, and alkene-containing amino acids can be incorporated into proteins genetically and can be specifically modified through various transformations. These transformations often rely on metal catalysis. The Cu-catalyzed azide-alkyne addition, Ru-catalyzed olefin metathesis, and Pd-catalyzed cross-coupling are examples of such transformations. In the course of adapting these reactions to protein modification, we learned much about the behavior of these reactions in water, and in some cases entirely new catalysts were developed. Through a combination of these bio-orthogonal transformations from the panel of tag-and-modify reactions, multiple and distinct modifications can be installed on protein surfaces. Multiple modifications are common in natural systems, and synthetic access to these proteins has enabled study of their biological role. Throughout these investigations, much has been learned in chemistry and biology. The demands of selective protein modification have revealed many aspects of reaction mechanisms, which in turn have guided the design of reagents and catalysts that allow their successful deployment in water and in biological milieu. With this ability to modify proteins, it is now possible to interrogate biological systems with precision that was not previously possible., (© 2011 American Chemical Society)
- Published
- 2011
- Full Text
- View/download PDF
50. A coordinated synthesis and conjugation strategy for the preparation of homogeneous glycoconjugate vaccine candidates.
- Author
-
Grayson EJ, Bernardes GJ, Chalker JM, Boutureira O, Koeppe JR, and Davis BG
- Subjects
- Adjuvants, Immunologic, Disulfides chemistry, Glycoconjugates chemistry, Klebsiella pneumoniae immunology, Klebsiella pneumoniae metabolism, O Antigens chemistry, Oligosaccharides chemistry, Structure-Activity Relationship, Subtilisins chemistry, Vaccines, Conjugate immunology, Glycoconjugates chemical synthesis, Vaccines, Conjugate chemistry
- Published
- 2011
- Full Text
- View/download PDF
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