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Hydrophobins, highly surface-active proteins, have the ability to reverse surface hydrophobicity through self-assembly at the hydrophilic-hydrophobic interfaces. Their unique structure and interfacial activity lead hydrophobins to have potential applications on surface functional modifications. However, class I hydrophobins are prone to self-assemble into highly insoluble amyloid-like rodlets structure. Recombinant hydrophobins could be produced by Escherichia coli but generally as an insoluble inclusion body. To overcome this insoluble expression limitation, cellulose-binding domain (CBD) from Clostridium thermocellum was fused to the N-terminal of class I hydrophobin HGFI to enhance its soluble expression in E. coli. Approximately, 94% of expressed CBD fused HGFI (CBD-HGFI) was found as soluble protein. The fused CBD could also bind specifically onto bacterial cellulose (BC) nanofibrils produced by Komagataeibacter xylinus to facilitate rapid isolation and purification of HGFI from crude extract. Lysostaphin (Lst), known as GlyGly endopeptidase could successfully cleave the flexible linker (GGGGS)2 between CBD and HGFI to recover HGFI from BC-bound CBD-HGFI. CBD-HGFI purified by immobilized metal-chelated affinity chromatography (IMAC) and Lst cleaved BC-CBD-HGFI still retained interfacial activity of hydrophobin and its effect on accelerating PETase hydrolysis against poly(ethylene terephthalate) (PET) fiber.

Because of their potential impact in food and bioprocessing, diagnostics, green(er) chemistry, and waste remediation, new enzyme immobilization technologies continue to be explored. In this work, a recombinant lactase (β-galactosidase) (LacZ) presenting a carbohydrate binding module (LacZ-CBM), was engineered, expressed, and immobilized onto cellulose (LacZ-CBM:cell). Binding density, activity, and pH and temperature activity profiles were characterized in comparison to wild type lactase (LacZ). LacZ-CBM effectively self-immobilized onto cellulose (Sigmacell®) in less than 2 h, demonstrating that recombinant enzymes with cellulose binding modules can enable immobilization onto solid supports without the need for chemical crosslinking agents. The immobilized recombinant LacZ-CBM:cell retained over 30% of its initial activity over 9 cycles. Both immobilized and non-immobilized LacZ-CBM presented similar optimum reaction conditions as wild type lactase, which demonstrates that the addition of a carbohydrate binding module (CBM) to lactase does not alter its optimum reaction conditions. This work has direct relevance to immobilized lactase applications (e.g. lactose reduced milk; oligosaccharide production) and serves as a model for other greener enzyme immobilization applications.

Marine bacteria which are symbionts with Eucheuma sp. and Sargassum sp. has the ability to convert seloluse into glucose. These processes are important during bioethanol production. Identification using PCR and 16S rRNA primers showed that the symbiotic bacteria in Eucheuma sp. was B. subtilis (97% identical to accession number NR. 027552.1) and symbiotic bacteria in Sargassum sp. was B. thuringiensis (97% identical to access number NR. 043403.1). Cellulotic indexes were identified for B. subtilis (2.477 mm) and B. thuringiensis (6.102 mm). Amplification of the endoglucanase gene were conducted with Bac-EuF and Bac-EuR primers in B. subtilis with size at 1416 bp (95% identical to accession number WP_017696508.1), whereas in B. thuriengeinsis the size was 1251 bp (92% identical to the accession number EEM47662). In silico analysis of the endoglucanase gene, showed that the catalytic and cellulose binding domains of B. subtilis were GH5 (aa residue 1-70) and CBM3 (aa residue 131-212), while in B. thuringiensis only GH8 catalytic domains were identified (aa residue 30 -370). The protein motif of the endoglucanase gene B. subtilis and B. thuringiensis had a high similarity characterized by the asn_glycosylation, camp_phospho_site, ck2_phospho_site, myristyl and pkc_phospho_site motif.

Lytic polysaccharide monooxygenases (LPMOs) play a crucial role in the enzymatic depolymerization of cellulose through oxidative cleavage of the glycosidic bond in the highly recalcitrant crystalline cellulose region. Improving the activity of LPMOs is of considerable importance for second-generation biorefinery. In this study, we identified a beneficial amino acid substitution (N526S) located in the cellulose binding module (CBM) of HcLPMO10 (LPMO of Hahella chejuensis) using directed evolution. The improved variant HcLPMO10 M1 (N526S) exhibits 2.1-fold higher activity for the H2O2 production, 2.7-fold higher oxidation activity, and 1.9-fold higher binding capacity toward cellulose compared with those of the wild type (WT). Furthermore, M1 shows 2.1-fold higher activity for degradation of crystalline cellulose in synergy with cellulase, compared to the WT. Structural analysis through molecular modeling and molecular dynamics (MD) simulation revealed that the substitution N526S located in the CBM likely stabilizes the cellulose binding surface and enhances the binding capacity of HcLPMO10 to cellulose, thereby enhancing enzyme activity. These findings demonstrate the important role of the CBM in the catalytic function of LPMO.

Many methods have been used to detect heavy metals in herbal medicines, while few are developed to remove them. In this study, a novel genetically engineered fusion protein composed of metallothionein (MT), cellulose binding module (CBM), and superfolder GFP (sfGFP) was designed to remove heavy metals. MT, a kind of cysteine-rich protein, was used to chelate heavy metals with high specific affinity. The CBM facilitated the fusion protein MT-CBM-sfGFP binding to cellulose specifically, which made the purification and immobilization in one step. The sfGFP was used to detect the fusion protein MT-CBM-sfGFP easily during the process of expression and immobilization. The MT from Cancer pagurus (MTCap) and the CBM from Cellulomonas fimi (CBMCef) were used as an example and the fusion protein (MTCap-CBMCef-sfGFP) was expressed in Escherichia coli. Then, the cell lysates were mechanically mixed with cellulose to create biosorbent MTCap-CBMCef-sfGFP@cellulose. The efficiency of the biosorbent MTCap-CBMCef-sfGFP@cellulose for Pb2+ removal was evaluated using the water decoction of Honeysuckle as a model. Results suggested that MTCap-CBMCef-sfGFP@cellulose had high efficiency for Pb2+ removal from the water decoction of Honeysuckle without affecting its active ingredients. The low-cost, easy production, and high efficiency of the biosorbent enable it to have many applications in heavy metal removal from aqueous solutions of herbal medicines and food.

Filamentous fungi secrete various oxidative enzymes to degrade the glycosidic bonds of polysaccharides. Cellobiose dehydrogenase (CDH) (E.C.1.1.99.18) is one of the important lignocellulose degrading enzymes produced by various filamentous fungi. It contains two stereo specific ligand binding domains, cytochrome and dehydrogenase - one for heme and the other for flavin adenine dinucleotide (FAD) respectively. The enzyme is of commercial importance for its use in amperometric biosensor, biofuel production, lactose determination in food, bioremediation etc. Termitomyces clypeatus, an edible fungus belonging to the basidiomycetes group, is a good producer of CDH. In this paper we have analyzed the structural properties of this enzyme from T. clypeatus and identified a distinct carbohydrate binding module (CBM) which is not present in most fungi belonging to the basidiomycetes group. In addition, the dehydrogenase domain of T. clypeatus CDH exhibited the absence of cellulose binding residues which is in contrast to the dehydrogenase domains of CDH of other basidiomycetes. Sequence analysis of cytochrome domain showed that the important residues of this domain were conserved like in other fungal CDHs. Phylogenetic tree, constructed using basidiomycetes and ascomycetes CDH sequences, has shown that very surprisingly the CDH from T. clypeatus, which is classified as a basidiomycetes fungus, is clustered with the ascomycetes group. A homology model of this protein has been constructed using the CDH enzyme of ascomycetes fungus Myricoccum thermophilum as a template since it has been found to be the best match sequence with T. clypeatus CDH. We also have modelled the protein with its substrate, cellobiose, which has helped us to identify the substrate interacting residues (L354, P606, T629, R631, Y649, N732, H733 and N781) localized within its dehydrogenase domain. Our computational investigation revealed for the first time the presence of all three domains - cytochrome, dehydrogenase and CBM - in the CDH of T. clypeatus, a basidiomycetes fungus. In addition to discovering the unique structural attributes of this enzyme from T. clypeatus, our study also discusses the possible phylogenetic status of this fungus.

Neutralizing antibodies (NAbs) prevent pathogens from infecting host cells. Detection of SARS-CoV-2 NAbs is critical to evaluate herd immunity and monitor vaccine efficacy against SARS-CoV-2, the virus that causes COVID-19. All currently available NAb tests are lab-based and time-intensive. We develop a 10 min cellulose pull-down test to detect NAbs against SARS-CoV-2 from human plasma. The test evaluates the ability of antibodies to disrupt ACE2 receptor—RBD complex formation. The simple, portable, and rapid testing process relies on two key technologies: (i) the vertical-flow paper-based assay format and (ii) the rapid interaction of cellulose binding domain to cellulose paper. Here we show the construction of a cellulose-based vertical-flow test. The developed test gives above 80% sensitivity and specificity and up to 93% accuracy as compared to two current lab-based methods using COVID-19 convalescent plasma. A rapid 10 min cellulose based test has been developed for detection of NAb against SARS-CoV-2. The test demonstrates comparable performance to the lab-based tests and can be used at Point-of-Care. Importantly, the approach used for this test can be easily extended to test RBD variants or to evaluate NAbs against other pathogens. In response to infections, the human body produces proteins called antibodies. Neutralizing antibodies (NAbs) are one type of such proteins that are capable of inactivating the target, such as the SARS-CoV-2 virus that causes COVID-19. Monitoring levels of NAb allows us to understand levels of protective immunity. However, current methods to measure NAb are laboratory-based and are not necessarily suitable for large scale NAb monitoring in a large population. We develop a rapid test to detect SARS-CoV-2 NAb in 10 min that can be operated outside a laboratory. Our test provides results that are comparable to lab-based tests, which require between 1 h and up to 2 days to get a result. Our test may be useful for large-scale monitoring of immunity, for example in populations that do not have routine access to a lab. Kongsuphol et al. develop a paper-based, vertical flow assay to detect SARS-CoV-2 neutralizing antibodies. The point-of-care assay has comparable performance to lab-based tests and provides results in 10 min.

From our earlier work, we modified the carbohydrate-binding module (CBM) of Bacillus amyloliquefaciens to increase cellulase activity using cold plasma technology. The cellulase gene (BglC-M) from the mutant was expressed in Escherichia coli BL21(DE3) under the T7 promoter. The hydrolysis activity of the cellulase mutant (BglC-M) was approximately 2.5-fold higher than the control (BglC-W) over a wide range of pH and temperature conditions. The amino acid sequence of the mutant BglC-M contained 471 residues that were almost identical to the control BglC-W. Only a single amino acid, lysine, was replaced by glutamic acid at position 370 (K370E) within the carbohydrate-binding module (CBM). Structure prediction and substrate docking of BglC-M indicated that the single mutation (K370E) might involve cellulose binding of the β-sandwich facilitated by hydrogen bonding. The docking study of cellopentaose with the model structure of BglC-M indicated that the replacement of lysine-370 led to the formation of a hydrogen bond with 436Y, which has a shorter distance (2.6 Å) compared with the control (5.4 Å). As a result, the structure becomes more compact and stable, resulting in increased catalytic efficiency. Finally, the biomass hydrolysis ability of cellulase was investigated on lignocellulosic wastes such as pineapple peel, corncob, and durian peel. The BglC-M enzyme showed a more significant amount of reducing sugar released from all lignocellulosic wastes than the control. This was the first evidence that altering the base composition of the cellulose binding module enhanced the catalytic activity. HIGHLIGHTS Increasing cellulase activity of Bacillus amyloliquefaciens using plasma technology Mutation at cellulose-binding module enhance cellulase hydrolysis activity Greater cellulase activity in the hydrolysis on lignocellulosic wastes GRAPHICAL ABSTRACT

The wide variety of enzymatic pathways that can benefit from enzyme scaffolding is astronomical. While enzyme co-localization based on protein, DNA, and RNA scaffolds has been reported, we still lack scaffolds that offer well-defined and uniform three-dimensional structures for enzyme organization. Here we reported a new approach for protein co-localization using naturally occurring protein nanocages as a scaffold. Two different nanocages, the 25 nm E2 and the 34 nm heptatitis B virus, were used to demonstrate the successfully co-localization of the endoglucanase CelA and cellulose binding domain using the robust SpyTag/SpyCatcher bioconjugation chemistry. Because of the simplicity of the assembly, this strategy is useful not only for in vivo enzyme cascading but also the potential for in vivo applications as well.

International audience; Background: Environmental bacteria express a wide diversity of glycoside hydrolases (GH). Screening and characterization of GH from metagenomic sources provides an insight into biomass degradation strategies of non-cultivated prokaryotes. Methods: In the present report, we screened a compost metagenome for lignocellulolytic activities and identified six genes encoding enzymes belonging to family GH9 (GH9a-f). Three of these enzymes (GH9b, GH9d and GH9e) were successfully expressed and characterized. Results: A phylogenetic analysis of the catalytic domain of pro-and eukaryotic GH9 enzymes suggested the existence of two major subgroups. Bacterial GH9s displayed a wide variety of modular architectures and those harboring an N-terminal Ig-like domain, such as GH9b and GH9d, segregated from the remainder. We purified and characterized GH9 endoglucanases from both subgroups and examined their stabilities, substrate specificities and product profiles. GH9e exhibited an original hydrolysis pattern, liberating an elevated proportion of oligosaccharides longer than cellobiose. All of the enzymes exhibited processive behavior and a synergistic action on crystalline cellulose. Synergy was also evidenced between GH9d and a GH48 enzyme identified from the same metagenome. Conclusions: The characterized GH9 enzymes displayed different modular architectures and distinct substrate and product profiles. The presence of a cellulose binding domain was shown to be necessary for binding and digestion of insoluble cellulosic substrates, but not for processivity. General significance: The identification of six GH9 enzymes from a compost metagenome and the functional variety of three characterized members highlight the importance of this enzyme family in bacterial biomass deconstruction.

The structural characteristics of the nascent fibril produced by Gluconacetobacter xylinum (G. xylinum) have been studied under the influence of the cellulose binding dye brilliant yellow (BY) by wide angle X-ray diffraction (WAXD), Fourier transform infrared spectroscopy (FTIR) and 13C solid-state nuclear magnetic resonance. BY is found to be more effective at reducing crystallinity than fluorescent brightener 28 (FB28), pontamine fast scarlet 4 (S4B) and other dyes previously studied. Under static cultivation conditions, increasing concentrations of brilliant yellow in the growth media from 20, 50, 100 to 250 μM, result in decreasing cellulose crystallinity from 73 to 18%, respectively, as compared to 82% exhibited by the control. FTIR data indicate that the presence of BY is most effective at suppressing intra-molecular hydrogen bonding. After boiling in 70 vol% aqueous EtOH solution for 12 h, the extracted dye-altered cellulose becomes more ordered, which may be due to the extraction of BY from the BY-cellulose complex. FTIR data indicate that compared to control cellulose, the reclaimed brilliant yellow-altered cellulose contains more cellulose Iβ, where the FB28 and S4B altered cellulose remains principally Iα. Based on WAXD and NMR data we propose a dye-cellulose complex structure associated with BY. This model supports the hypothesis that microfibrils assemble through the hydrogen bonding of formed mini-sheets that consist of stacked glucan chains linked by van der Waals forces.

Hemoglobin A1c (HbA1c) is a hemoglobin molecule in which the N-terminal valine residue of the β subunit has been grafted with the glucose in blood. Its detection has important implications for the diagnosis of diabetes. Enzymatic colorimetric method using fructosyl peptide oxidase (FPO) is simple and rapid for HbA1c detection. A FPO mutant with enhanced activity was constructed and produced by E. coli; however, most of expressed mutant FPO was insoluble. Significantly enhanced expression solubility was achieved when cellulose-binding domain (CBD) from Clostridium thermocellum was fused to the N-terminal of FPO mutant. Via the high affinity interaction between CBD and cellulose, the CBD fusion also facilitated the simultaneous purification and immobilization of FPO directly from E. coli cells lysate using bacterial cellulose (BC) nanofibrils as a matrix of very high specific area. A never-dried and water durable nanocellulose film with FPO activity could be easily obtained by collecting the FPO immobilized BC nanofibrils suspension on the surface of a microfiltration membrane. The activity of the ready-use FPO nanocellulose film was stable at least 7 days at room temperature for the detection of HbA1c level of 5.3–11% in blood samples.

The origin, amount, hydrophilicity, charge, molecular weight and its distribution of lignin have significant influences on the enzymatic hydrolysis of lignocellulose. The enzymatic hydrolysis of lignocellulose was essentially enhanced by lignin-based polyoxyethylene ether (EHL-PEG), whereafter followed by PEG4600 and lignosulfonate (LS). The effect of LS, EHL-PEG and PEG4600 on the adsorption and enzymatic hydrolysis kinetics of cellulase on the gold surface and cellulose film was investigated by Quartz Crystal Microbalance with dissipation monitoring (QCM-D). Results showed that the interaction of LS or EHL-PEG with cellulase was electrostatic attractive and hydrophobic effect, respectively, and formed hydrophilic cellulase aggregates. LS-Cellulase peeled off the cellulose film layer by layer, while the hydrophobic phenylpropane structure of EHL-PEG-Cellulase acted as a cellulose binding domain to hydrolysis cellulose through "Hollow" effect and made cellulose become more loose and swollen. At last, a strategy to enhance the enzymatic hydrolysis of lignocellulose by lignin-based amphiphilic polymers was proposed as well.

Cellulose-binding modules (CBMs) are non-catalytic domains typically occurring in glycoside hydrolases. Their specific interaction with diverse polysaccharides assists hydrolysis by the catalytic subunits. In this work, we have exploited the interactions between a CBM from family 3 (CBM3) and cell wall polysaccharides to alter the structure and mechanical properties of cellulose microfibrils from BY-2 tobacco cell suspension cultures. A CBM3 from Clostridium thermocellum was overexpressed in the cells using Agrobacterium-mediated transformation. Water suspensions of cellulose microfibrils were prepared by the removal of the non-cellulosic components of the primary cell walls, followed by mild disintegration using sonication. The morphology of the microfibrils was characterized by transmission electron microscopy and atomic force microscopy. These cellulose microfibrils were further hydrolyzed with 64 wt% sulfuric acid to produce cellulose nanocrystals (CNCs). The average length of CNCs prepared from the CBM3-transformed cells was 201 nm, higher than that from the wild-type cells (122 nm). In addition, the mechanical properties and deformation mechanism of nanopapers prepared from suspensions of cellulose microfibrils were investigated. The nanopapers obtained from the CBM3-transformed cells exhibited enhanced tensile strength and work of fracture, 40% and 128% higher than those prepared from wild-type tobacco cells, respectively.

Endoglucanase CtCel9Q is one of the enzyme components of the cellulosome, which is an active cellulase system in the thermophile Clostridium thermocellum. The precursor form of CtCel9Q comprises a signal peptide, a glycoside hydrolase family 9 catalytic domain, a type 3c carbohydrate-binding module (CBM), and a type I dockerin domain. Here, we report the crystal structures of C-terminally truncated CtCel9Q (CtCel9QΔc) complexed with Tris, Tris+cellobiose, cellobiose+cellotriose, cellotriose, and cellotetraose at resolutions of 1.50, 1.70, 2.05, 2.05 and 1.75 Å, respectively. CtCel9QΔc forms a V-shaped homodimer through residues Lys529-Glu542 on the type 3c CBM, which pairs two β-strands (β4 and β5 of the CBM). In addition, a disulfide bond was formed between the two Cys535 residues of the protein monomers in the asymmetric unit. The structures allow the identification of four minus (-) subsites and two plus (+) subsites; this is important for further understanding the structural basis of cellulose binding and hydrolysis. In the oligosaccharide-free and cellobiose-bound CtCel9QΔc structures, a Tris molecule was found to be bound to three catalytic residues of CtCel9Q and occupied subsite -1 of the CtCel9Q active-site cleft. Moreover, the enzyme activity assay in the presence of 100 mm Tris showed that the Tris almost completely suppressed CtCel9Q hydrolase activity.

Understanding the thermodynamic interactions of cellulose nanomaterials with their environment is important to understand the forces behind their self-organization and co-organisation with other compounds, and to be able to use self-assembly to form new functional multicomponent materials. This review analyzes published studies that determined the thermodynamic parameters of the surface interactions of and adsorption of various compounds (proteins, polymers, and small molecules/ions) onto cellulose nanomaterials. We compiled the data reported and performed a meta-analysis for better comparison and to find trends in the published data. We first introduce the methods employed and describe the adsorption isotherm models typically used to describe the adsorption thermodynamics on nanocellulose surfaces. We then discuss and analyze the published results for the interaction of the various compounds with nanocellulose surfaces. The systems that have been reported on most were adsorption of natural binding proteins and various pollutants from water, such as heavy metal ions, dyes, and drugs. Interactions between cellulose surfaces and the cellulose binding module were generally both enthalpy- and entropy-driven, where the negative binding enthalpy indicates the formation of specific interactions between peptides and the carbohydrate backbone. On the other hand, interactions with charged molecules were mostly endothermic and purely entropy-driven, indicating that the adsorption on nanocellulose surfaces can be described as an interaction between opposite charges, where the entropy increase that arises from the release of surface-structured water molecules and counterions from the electronic double layer supplies the major contribution to the free energy of adsorption. We performed a meta-analysis on all published data, and found a linear relationship between ∆H and ∆S with the slope equal to the reference temperature, irrespective of whether the interacting compound is a specific cellulose binding protein, a non-specific binding protein, a polymer, or a small molecule/ion. This indicates that the process of adsorption is the same for all compounds and takes place with a constant change in Gibbs free energy of interaction, ∆G, where a change in interaction enthalpy is offset by change in entropy change upon binding and vice versa.

It is widely acknowledged that the rate limiting step in the enzyme-mediated deconstruction of the biomass process is the restricted ability of the enzymes to access the cellulosic substrate. An ongoing challenge has been to find reproducible and quantifiable methods for measuring enzyme accessibility to cellulose. Type A (crystalline cellulose) and type B (paracrystalline) cellulose binding modules (CBMs) were used in parallel with microscopy, fiber analysis (aspect ratio), and water retention values (WRV) to determine if the observed and anticipated changes in differentially prepared microfibrillated cellulose (MFC) substrates were similar. It was apparent that with increasing refining there was a corresponding increase in fibrillation (SEM and WRV), as well as a decrease in aspect ratio. Although the initial degree and rate of enzymatic hydrolysis increased with prolonged refining, above 1000 kWh ton–1 little improvement in either was observed. However, when cellulose accessibility was assessed by the ...

Cationic polymers (cationic polyacrylamide (CPAM), polyethyleneimine (PEI) or cationic starch (CS)) were used to enhance the enzymatic hydrolysis of waste paper fibers (WPFs) at 15% (w/w) solids concentration. Results showed that 0.05 g/L PEI, CPAM and CS resulted in 72.5%, 65.9% and 59.7% conversion of WPFs, increased by 15.4%, 8.8% and 2.6%, respectively, compared with control (57.1%). PEI was shown to have a larger effect than CPAM and CS, and generate a total sugar concentration of 73.9 g/L. Improvement in hydrolysis with cationic polymer addition is attributed to increased cellulase adsorption on cellulose through electrostatic attraction, rather than enhancement of cellulase activity. A patching/ bridging mechanism of cationic polymer enhancement of cellulose adsorption in cellulose is hypothesized. PEI exhibited maximum cellulose binding for polymers examined and appears to promote binding through a patching mechanism. CPAM and CS adsorbed a relatively low cellulase through bridging mechanism. In addition, enzyme loading could be reduced by addition of cationic polymers to obtain the same glucose yield, especially when PEI was used.

Commercial cellulase preparations for lignocellulose bioconversion are mainly produced by the fungus Trichoderma reesei. The maximum cellulose conversion of T. reesei cellulase mixture was 15%-20% higher than that of Penicillium oxalicum in the hydrolysis of corncob residue and Avicel. Nevertheless, both preparations hydrolyzed more than 92% of cellulose in NaOH-mercerized Avicel. When added to Avicel hydrolysis residue that was less reactive to P. oxalicum cellulases, cellobiohydrolase I (CBH I) from T. reesei resulted in a higher cellulose conversion than its homologous proteins from P. oxalicum and Aspergillus niger at the same protein loadings. Further domain exchange experiment attributed the high hydrolytic efficiency of T. reesei CBH I to its inter-domain linker and cellulose-binding domain. The results in part explained the superior performance of T. reesei cellulases on the degradation of native crystalline cellulose, and highlighted the important role of cellulose-binding region in determining the degree of hydrolysis by cellulases.

Graphical abstract, Highlights • A left-handed triangular prism beta-solenoid scaffold (BeSS) was designed, built and validated. • Vertex inserts in BeSS-CBM3-GH11 xylanase chimeras varies interdomain distance and orientation. • A library of BeSS-CBM3-GH11 chimeras tested against various lignocellulosic biomasses. • Maximum reducing sugar release when CBM3 and GH11 domains aligned on the same vertex. • CBM3 binding to cellulose fibres facilitates GH11 hydrolysis of intercalated xylan., Effective use of plant biomass as an abundant and renewable feedstock for biofuel production and biorefinery requires efficient enzymatic mobilization of cell wall polymers. Knowledge of plant cell wall composition and architecture has been exploited to develop novel multifunctional enzymes with improved activity against lignocellulose, where a left-handed β–3-prism synthetic scaffold (BeSS) was designed for insertion of multiple protein domains at the prism vertices. This allowed construction of a series of chimeras fusing variable numbers of a GH11 β-endo-1,4-xylanase and the CipA-CBM3 with defined distances and constrained relative orientations between catalytic domains. The cellulose binding and endoxylanase activities of all chimeras were maintained. Activity against lignocellulose substrates revealed a rapid 1.6- to 3-fold increase in total reducing saccharide release and increased levels of all major oligosaccharides as measured by polysaccharide analysis using carbohydrate gel electrophoresis (PACE). A construct with CBM3 and GH11 domains inserted in the same prism vertex showed highest activity, demonstrating interdomain geometry rather than number of catalytic sites is important for optimized chimera design. These results confirm that the BeSS concept is robust and can be successfully applied to the construction of multifunctional chimeras, which expands the possibilities for knowledge-based protein design.

The large amounts of polyethylene terephthalate (PET) that enter and accumulate in the environment have posed a serious threat to global ecosystems and human health. A PET hydrolase from PET-assimilating bacterium Ideonella sakaiensis (IsPETase) that exhibits superior PET hydrolytic activity at mild conditions is attracting enormous attention in development of plastic biodegrading strategies. In order to enhance the PET hydrolysis capacity of IsPETase, we selected several polymer-binding domains that can adhere to a hydrophobic polymer surface and fused these to a previously engineered IsPETaseS121E/D186H/R280A (IsPETaseEHA) variant. We found that fusing a cellulose–binding domain (CBM) of cellobiohydrolase I from Trichoderma reesei onto the C-terminus of IsPETaseEHA showed a stimulatory effect on enzymatic hydrolysis of PET. Compared to the parental enzyme, IsPETaseEHA_CBM exhibited 71.5 % and 44.5 % higher hydrolytic activity at 30 ℃ and 40 ℃, respectively. The catalytic activity of IsPETaseEHA_CBM was increased by 86 % when the protein concentration was increased from 2.5 μg/mL to 20 μg/mL. These findings suggest that the fusion of polymer-binding module to IsPETase is a promising strategy to stimulate the enzymatic hydrolysis of PET.

This study aimed to produce and characterize a recombinant Kluyveromyces sp. β-galactosidase fused to a cellulose-binding domain (CBD) for industrial application. In expression assays, the highest enzymatic activities occurred after 48 h induction on Escherichia coli C41(DE3) strain at 20 °C in Terrific Broth (TB) culture medium, using isopropyl β- d -1-thiogalactopyranoside (IPTG) 0.5 mM (108.77 U/mL) or lactose 5 g/L (93.10 U/mL) as inducers. Cultures at bioreactor scale indicated that higher product yield values in relation to biomass (2000 U/g) and productivity (0.72 U/mL.h) were obtained in culture media containing higher protein concentration. The recombinant enzyme showed high binding affinity to nanocellulose, reaching both immobilization yield and efficiency values of approximately 70% at pH 7.0 after 10 min reaction. The results of the present study pointed out a strategy for recombinant β-galactosidase-CBD production and immobilization, aiming toward the application in sustainable industrial processes using low-cost inputs.

Cerato-platanin family (CPF) proteins are produced by fungi and elicit defences when applied to plants, behaving as PAMPs/MAMPs. CPF proteins share structural similarity to plant and bacterial expansins, and have been demonstrated, in some cases, to possess expansin-like loosening activity on cellulose. This is the case of cerato-platanin (CP), the founder of the CPF, which shows both eliciting and cellulose-loosening activities, raising the question as to whether the expansin-like activity may be responsible for defence activation. To pinpoint structural and thermodynamic features underlying eliciting and expansin-like activity of CP, we carried out site-directed mutagenesis targeting separately net charge (N84D mutation), conformational stability (V63A mutation), or conserved position previously shown to affect expansin-like activity in CP (D77A mutation), and characterized wild-type protein and its variants. Removing or adding negative charges on the protein surface led to reducing or increasing, respectively, the expansin-like activity. The activity was instead not affected by mutations affecting protein fold and stability. In contrast, all the mutants showed reduced capacity to elicit defences in plants. We conclude that the expansin-like activity of CP depends on net charge and ability to (weakly) bind cellulose, whereas the eliciting activity on plants does not depend on the cellulose-loosening activity.

Cytophaga hutchinsonii cells can bind to the surface of insoluble cellulose and degrade it by utilizing a novel cell contact-dependent mechanism, in which the outer membrane proteins may play important roles. In this study, the deletion of a gene locus, chu_1165, which encodes a hypothetical protein with 32% identity with TlpB, a disulfide oxidoreductase in Flavobacterium psychrophilum, caused a complete cellulolytic defect in C. hutchinsonii. Further study showed that cells of the Δ1165 strain could not bind to cellulose, and the levels of many outer membrane proteins that can bind to cellulose were significantly decreased. The N-terminal region of CHU_1165 is anchored to the cytoplasmic membrane with five predicted transmembrane helices, and the C-terminal region is predicted to stretch to the periplasm and has a similar thioredoxin (Trx) fold containing a Cys-X-X-Cys motif that is conserved in disulfide oxidoreductases. Recombinant CHU_1165His containing the Cys-X-X-Cys motif was able to reduce the disulfide bonds of insulin in vitro. Site-directed mutation showed that the cysteines in the Cys-X-X-Cys motif and at residues 106 and 108 were indispensable for the function of CHU_1165. Western blotting showed that CHU_1165 was in an oxidized state in vivo, suggesting that it may act as an oxidase to catalyze disulfide bond formation. However, many of the decreased outer membrane proteins that were essential for cellulose degradation contained no or one cysteine, and mutation of the cysteine in these proteins did not affect cellulose degradation, indicating that CHU_1165 may have an indirect or pleiotropic effect on the function of these outer membrane proteins. IMPORTANCECytophaga hutchinsonii can rapidly digest cellulose in a contact-dependent manner, in which the outer membrane proteins may play important roles. In this study, a hypothetical protein, CHU_1165, characterized as a disulfide oxidoreductase, is essential for cellulose degradation by affecting the cellulose binding ability of many outer membrane proteins in C. hutchinsonii. Disulfide oxidoreductases are involved in disulfide bond formation. However, our studies show that many of the decreased outer membrane proteins that were essential for cellulose degradation contained no or one cysteine, and mutation of cysteine did not affect their function, indicating that CHU_1165 did not facilitate the formation of a disulfide bond in these proteins. It may have an indirect or pleiotropic effect on the function of these outer membrane proteins. Our study provides an orientation for exploring the proteins that assist in the appropriate conformation of many outer membrane proteins essential for cellulose degradation, which is important for exploring the novel mechanism of cellulose degradation in C. hutchinsonii.

Cellulosomes, which are multienzyme complexes from anaerobic bacteria, are considered nature's finest cellulolytic machinery. Thus, constructing a cellulosome in an industrial yeast has long been a goal pursued by scientists. However, it remains highly challenging due to the size and complexity of cellulosomal genes. Here, we overcame the difficulties by synthesizing the Clostridium thermocellum scaffoldin gene (CipA) and the anchoring protein gene (OlpB) using advanced synthetic biology techniques. The engineered Kluyveromyces marxianus, a probiotic yeast, secreted a mixture of dockerin-fused fungal cellulases, including an endoglucanase (TrEgIII), exoglucanase (CBHII), β-glucosidase (NpaBGS), and cellulase boosters (TaLPMO and MtCDH). The confocal microscopy results confirmed the cell-surface display of OlpB-ScGPI and fluorescence-activated cell sorting analysis results revealed that almost 81% of yeast cells displayed OlpB-ScGPI. We have also demonstrated the cellulosome complex formation using purified and crude cellulosomal proteins. Native polyacrylamide gel electrophoresis and mass spectrometric analysis further confirmed the cellulosome complex formation. Our engineered cellulosome can accommodate up to 63 enzymes, whereas the largest engineered cellulosome reported thus far could accommodate only 12 enzymes and was expressed by a plasmid instead of chromosomal integration. Interestingly, CipA 2B9C (with two cellulose binding modules, CBM) released significantly higher quantities of reducing sugars compared with other CipA variants, thus confirming the importance of cohesin numbers and CBM domain on cellulosome complex. The engineered yeast host efficiently degraded cellulosic substrates and released 3.09 g/L and 8.61 g/L of ethanol from avicel and phosphoric acid-swollen cellulose, respectively, which is higher than any previously constructed yeast cellulosome.

We report herein the use of nanofibrillated cellulose (NFC) for development of enzyme assemblies in an oriented manner for biotransformation with in situ cofactor regeneration. This is achieved by developing fusion protein enzymes with cellulose-specific binding domains. Specifically, lactate dehydrogenase and NADH oxidase were fused with a cellulose binding domain, which enabled both enzyme recovery and assembling in essentially one single step by using NFC. Results showed that the binding capacity of the enzymes was as high as 0.9 μmol-enzyme/g-NFC. Compared to native parent free enzymes, NFC-enzyme assemblies improved the catalytic efficiency of the coupled reaction system by over 100%. The lifetime of enzymes was also improved by as high as 27 folds. The work demonstrates promising potential of using biocompatible and environmentally benign bio-based nanomaterials for construction of efficient catalysts for intensified bioprocessing and biotransformation applications.

Decoding the mechanisms of plant defense against plant pathogens in a scenario where antagonistic activity and the plant growth-promoting effects of useful organisms intervene simultaneously is a new frontier of plant pathology. Here, we demonstrated that (i) two selected strains of Trichoderma asperellum and Trichoderma atroviride promoted tomato (Solanum lycopersicum) growth and reduced the severity of disease caused by the oomycete Phytophthora nicotianae and (ii) the genetic patterns of the components of the experimental model system tomato–Trichoderma spp.–P. nicotianae were differentially expressed. The beneficial effects in both the promotion of the growth of host plant and the biological control of the pathogen by two selected strains of different Trichoderma species were tested both in planta and in vitro. In both respects, T. atroviride demonstrated to be more effective than T. asperellum. Additionally, the simultaneous transcriptional reprogramming of several plant defense-related genes, pathogen effectors, and mycoparasitism-related genes in tomato, P. nicotianae, and Trichoderma spp., respectively, was evaluated during the three-component interaction. Results support the hypothesis that Trichoderma spp. elicit the expression of plant defense-related genes. As expected, a mycoparasitism-related gene was significantly up-regulated in Trichoderma-colonizing tomato plants infected by P. nicotianae. Finally, a marked up-regulation of the genes encoding two necrosis-inducing effectors was observed in P. nicotianae infecting tomato plants colonized by Trichoderma. In conclusion, this study is a contribution toward understanding the genetic pathways related with the ability of Trichoderma spp. to counteract the challenge of P. nicotianae infections on tomato. Additionally, the experiments revealed the beneficial effects in the tomato growth promotion of a new T. atroviride strain and its good antagonistic effectiveness in the biological control of root and crown rot incited by P. nicotianae, confirming that Trichoderma spp. can be a powerful tool in integrated pest management strategies of Phytophthora diseases of horticultural crops.

application/pdf, Article, Process Biochemistry, 2018, 74, p.28-34

In the present study, a novel species of Fusarium oxysporum involved in the disease outbreak among freshwater murrel, Channa striatus was identified from natural lake in India and the pathogenesis was confirmed by infection studies. Using Illumina paired-end sequencing technology, we have sequenced, assembled and annotated the transcriptome of F. oxysporum isolate. A total of 53,397,192 high quality paired-end reads were assembled into 27,886 unique reads and gene ontology (GO) analysis revealed that the transcripts of F. oxysporum belonged to 1656 unique GO terms. An in-depth search for the genes with putative virulence functions revealed well-represented virulence-associated domains containing proteins such as cellulose binding proteins, proteases, kinases, kinase inhibitor and toxins. Sequence alignment revealed clear insights into the diversity and similarity of those virulence genes with plant pathogens. qRT-PCR analysis of five genes with putative virulence genes confirms the virulence roles of those genes in the pathogenesis of F. oxysporum in C. striatus. This study provides novel information regarding the transcriptome of fungal pathogen and delivers insights into the virulence genes associated with the pathogenesis of the F. oxysporum isolate which might be useful for the control of the fungal pathogenesis.

Phytophthora infestans is a global challenging pathogen among the biotic stresses which affect healthy and sustainable potato production. Desirable and successful management strategies depend on understanding of its biology, disease cycle and more importantly rapid and accurate detection of the pathogen during early stage of infection. Here, we report production of recombinant antibodies against whole cellulose binding domain (CBD-1) protein of P. infestans and a synthetic signal peptide of CBD1 and their effectiveness in detection of P. infestans both in infected potato leaf and tuber. The recombinant whole CBD1 protein and synthetic signal peptide of CBD1 protein was used to immunize the rabbits and blood serum was collected, purified and measured by SDS–PAGE. Among the two antibodies, synthetic peptide based antibody showed high specificity for mycelia, sporangia and zoospores. It also showed strong signal intensity for P. infestans infected leaf and tuber tissues. The data indicated that the produced synthetic peptide antiserum was efficient and accurate in discrimination of negative and positive samples in ELISA. Reaction of antiserum with early stage of infected leaf and tuber tissue confirmed the expression of the CBD protein, which in turn confirmed the presence of the pathogen in the plant tissues. Therefore it will enable to detect the pathogen in the potato seed before planting as well as in the standing crop in the field thus, would be helpful to ensure production of healthy seed potatoes and for effective schedule for management practices.

Glycoside hydrolase family 30 subfamily 7 (GH30-7) enzymes include various types of xylanases, such as glucuronoxylanase, endoxylanase, xylobiohydrolase, and reducing-end xylose-releasing exoxylanase. Here, we characterized the mode of action and gene expression of the GH30-7 endoxylanase from the cellulolytic fungus Talaromyces cellulolyticus (TcXyn30C). TcXyn30C has a modular structure consisting of a GH30-7 catalytic domain and a C-terminal cellulose binding module 1, whose cellulose-binding ability has been confirmed. Sequence alignment of GH30-7 xylanases exhibited that TcXyn30C has a conserved Phe residue at the position corresponding to a conserved Arg residue in GH30-7 glucuronoxylanases, which is required for the recognition of the 4-O-methyl-α-d-glucuronic acid (MeGlcA) substituent. TcXyn30C degraded both glucuronoxylan and arabinoxylan with similar kinetic constants and mainly produced linear xylooligosaccharides (XOSs) with 2 to 3 degrees of polymerization, in an endo manner. Notably, the hydrolysis of glucuronoxylan caused an accumulation of 2(2)-(MeGlcA)-xylobiose (U(4m2)X). The production of this acidic XOS is likely to proceed via multistep reactions by putative glucuronoxylanase activity that produces 2(2)-(MeGlcA)-XOSs (X(n)U(4m2)X, n ≥ 0) in the initial stages of the hydrolysis and by specific release of U(4m2)X from a mixture containing X(n)U(4m2)X. Our results suggest that the unique endoxylanase activity of TcXyn30C may be applicable to the production of linear and acidic XOSs. The gene xyn30C was located adjacent to the putative GH62 arabinofuranosidase gene (abf62C) in the T. cellulolyticus genome. The expression of both genes was induced by cellulose. The results suggest that TcXyn30C may be involved in xylan removal in the hydrolysis of lignocellulose by the T. cellulolyticus cellulolytic system. IMPORTANCE Xylooligosaccharides (XOSs), which are composed of xylose units with a β-1,4 linkage, have recently gained interest as prebiotics in the food and feed industry. Apart from linear XOSs, branched XOSs decorated with a substituent such as methyl glucuronic acid and arabinose also have potential applications. Endoxylanase is a promising tool in producing XOSs from xylan. The structural variety of XOSs generated depends on the substrate specificity of the enzyme as well as the distribution of the substituents in xylan. Thus, the exploration of endoxylanases with novel specificities is expected to be useful in the provision of a series of XOSs. In this study, the endoxylanase TcXyn30C from Talaromyces cellulolyticus was characterized as a unique glycoside hydrolase belonging to the family GH30-7, which specifically releases 2(2)-(4-O-methyl-α-d-glucuronosyl)-xylobiose from hardwood xylan. This study provides new insights into the production of linear and branched XOSs by GH30-7 endoxylanase.

A fluorescent stain, calcofluor white (CFW), was used for detection of spores of the microsporidium Enterocytozoon hepatopenaei (EHP). EHP spores in suspension, in feces, or in the infected hepatopancreas of the shrimp Penaeus vannamei, can be easily stained with this chitin and cellulose binding dye to show distinct blue-white fluorescent oval walls. The dye does not stain the host tissues. EHP spores showed orange-red spots by staining with hematoxylin and phloxine (H&P) in the section. CFW staining provides a simple and rapid method for determining the presence of EHP spores in fecal or tissue samples.

Lytic polysaccharide monooxygenases (LPMOs) are a group of recently discovered enzymes that play important roles in the decomposition of recalcitrant polysaccharides. Here, we report the biochemical, structural, and computational characterization of an LPMO from the white-rot fungus Heterobasidion irregulare (HiLPMO9B). This enzyme oxidizes cellulose at the C1 carbon of glycosidic linkages. The crystal structure of HiLPMO9B was determined at 2.1 A resolution using X-ray crystallography. Unlike the majority of the currently available C1-specific LPMO structures, the HiLPMO9B structure contains an extended L2 loop, connecting β-strands β2 and β3 of the β-sandwich structure. Molecular dynamics (MD) simulations suggest roles for both aromatic and acidic residues in the substrate binding of HiLPMO9B, with the main contribution from the residues located on the extended region of the L2 loop (Tyr20) and the LC loop (Asp205, Tyr207, and Glu210). Asp205 and Glu210 were found to be involved in the hydrogen bonding with the hydroxyl group of the C6 carbon of glucose moieties directly or via a water molecule. Two different binding orientations were observed over the course of the MD simulations. In each orientation, the active-site copper of this LPMO preferentially skewed toward the pyranose C1 of the glycosidic linkage over the targeted glycosidic bond. This study provides additional insight into cellulose binding by C1-specific LPMOs, giving a molecular-level picture of active site substrate interactions. Database The atomic coordinates and structure factors for HiLPMO9B have been deposited in the Protein Data Bank with accession code 5NNS.

The use of recently discovered polysaccharide monooxygenases (PMO) in the composition of cellulase complexes greatly enhances their saccharification ability. Genetic engineering is used in this work to produce a chimeric enzyme based on the Thielavia terrestris PMO with cellulose binding module (CBM) from the Penicillium verruculosum cellobiohydrolase I attached to the PMO С-terminus via a peptide linker. Chimeric PMO exhibits higher (by 24%) activity toward amorphous cellulose and wider substrate specificity than the initial PMO. As a result of the CBM attachment, chimeric PMO acquires the ability to cleave xylan and carboxymethyl cellulose in addition to cellulose and β-glucan, and its activity toward xyloglucan increases by one order of magnitude. Replacing 10% of the highly active cellulase preparation hBGL2 produced by P. verruculosum with the chimeric PMO while retaining the overall dose of the enzymes with regard to their protein concentration increases the yield of sugars during the hydrolysis of microcrystalline cellulose and powdered aspen wood by 24 and 47%, respectively. In addition, the maximum yield of sugars during wood hydrolysis is achieved in 24 h of reaction time, in contrast to hydrolysis with the indicated preparation without the added PMO, which requires 48 h.

Background Cellulose accessibility to cellulases (CAC) is a direct factor determining the enzymatic digestibility of lignocellulosic cellulose. Improving CAC by pretreatment is a prerequisite step for the efficient release of fermentable sugars from biomass cell wall. However, conventional methods to study the porosimetry of solid materials showed some limitations to be used for investigating CAC. In this work, an updated novel fusion protein comprising a fungal cellulose-binding module (CBM) from Cel7A cellobiohydrolase I (CBH I) of Trichoderma reesei QM6 and a di-green fluorescent protein (GFP2) was constructed for quantitative determination of CAC. Results The obtained probe protein had similar molecular size (e.g., weight) with that of Cel7A and could give detectable signal for quantitative analysis. Several construction strategies were compared with regard to the site of His-tag and order of CBM and GFP2 modules in the protein sequence, in order to achieve good expression quantity and usability of the probe protein. His6–CBM–GFP2 has been identified as the best probe protein for investigating the effects of structural features of cellulosic substrates on cellulose accessibility. Substrate samples with different contents of xylan, lignin, and degree of substitution of cellulose –OH by formyl group were obtained, respectively, by mild H2SO4 pre-hydrolysis, NaClO2 selective delignification, and treatment of filter paper cellulose with concentrated formic acid. The determined CAC was in a wide range of 0.6–20.4 m2/g depending on the contents of hemicelluloses, lignin, and formyl group as well as cellulose degree of crystallization. Conclusions The obtained fusion probe protein could be used as a versatile tool to quantitatively investigate the impacts of biomass structural features on CAC and hydrolyzability of cellulose substrates, as well as nonproductive adsorption of cellulase enzymes on lignin. Electronic supplementary material The online version of this article (10.1186/s13068-018-1105-0) contains supplementary material, which is available to authorized users.

In this study, a simple, inexpensive and fast β-glucosidase immobilization system was constructed and evaluated in isoflavone glycosides hydrolysis. A β-glucosidase gene from Thermoascus aurantiacus IFO9748 was recombinantly expressed in Pichia pastoris KM71H and immobilized on regenerated amorphous cellulose (RAC) by fused cellulose binding module 3. Through simple mixing cellulose and crude enzyme for 15 min under room temperature, 96.04% β-glucosidase was immobilized onto RAC. The optimum temperature for β-glucosidase activity was increased by 5oC after immobilization. The half-life (t½) of heat inactivation of immobilized enzyme at 60oC was improved over 8 folds. After 30 rounds recycled at 40oC, 96.9% daidzin and 98.9% genistin could still be hydrolyzed. A continuous hydrolysis system was also constructed, and at the flow rate of 0.2 mL/min after 30 h hydrolysis, 95.6% genistin and 90.2% daidzin can still be hydrolyzed. Combined the simple and high efficient enzyme immobilization procedure and inexpensive cellulose, this scalable and practical system may have broad prospects for industrial utilization.

For decades, the enzymes of the fungus Hypocrea jecorina have served as a model system for the breakdown of cellulose. Three-dimensional structures for almost all H. jecorina cellulose-degrading enzymes are available, except for HjLPMO9A, belonging to the AA9 family of lytic polysaccharide monooxygenases (LPMOs). These enzymes enhance the hydrolytic activity of cellulases and are essential for cost-efficient conversion of lignocellulosic biomass. Here, using structural and spectroscopic analyses, we found that native HjLPMO9A contains a catalytic domain and a family-1 carbohydrate-binding module (CBM1) connected via a linker sequence. A C terminally truncated variant of HjLPMO9A containing 21 residues of the predicted linker was expressed at levels sufficient for analysis. Here, using structural, spectroscopic, and biochemical analyses, we found that this truncated variant exhibited reduced binding to and activity on cellulose compared with the full-length enzyme. Importantly, a 0.95-Å resolution X-ray structure of truncated HjLPMO9A revealed that the linker forms an integral part of the catalytic domain structure, covering a hydrophobic patch on the catalytic AA9 module. We noted that the oxidized catalytic center contains a Cu(II) coordinated by two His ligands, one of which has a His-brace in which the His-1 terminal amine group also coordinates to a copper. The final equatorial position of the Cu(II) is occupied by a water-derived ligand. The spectroscopic characteristics of the truncated variant were not measurably different from those of full-length HjLPMO9A, indicating that the presence of the CBM1 module increases the affinity of HjLPMO9A for cellulose binding, but does not affect the active site.

Effective hydrolysis of cellulose to glucose is a crucial step to produce fuels and chemicals from lignocellulosic biomass. Solid acids are promising alternatives of cellulases and homogenous acids for hydrolyzing cellulose. In this study, porous polymeric solid acids bearing hydroxyl and sulfonic acid groups were fabricated for cellulose hydrolysis in water through the low-cost Friedel-Crafts “knitting” polymerization of hydroxyl-containing aromatic monomers followed by sulfonation. The synthesized bifunctional solid acids could effectively hydrolyze microcrystalline cellulose (Avicel) to glucose by as high as 93 % at 120 °C within 48 h and ball-milled Avicel by 98 % at 120 °C in 24 h. The evidence from this study indicated that the outstanding catalytic performance of the solid acids was attributed to the porous structure (large surface area) and the presence of the hydroxyl (cellulose-binding group) in the solid acids.

The small cellulose-binding-domain protein CBD1 is tightly bound to the cellulosic cell wall of the plant pathogenic stramenopile Phytophthora infestans. Transgene expression of the protein in potato plants also demonstrated binding to plant cell walls. A study was undertaken using 47 isolates of P. infestans from a worldwide collection, along with 17 other Phytophthora species and a related pathogen Plasmopara halstedii, to determine if the critical cell wall protein is subject to amino acid variability. Within the amino acid sequence of the secreted portion of CBD 1, encoded by the P. infestans isolates, 30 were identical with each other, and with P. mirabilis. Four isolates had one amino acid difference, each in a different location, while one isolate had two amino acid substitutions. The remaining 13 isolates had five amino acid changes that were each in identical locations (D17/G, D31/G, I32/S, T43/A, and G50/A), suggesting a single origin. Comparison of P. infestans CBD1 with other Phytophthora species identified extensive amino acid variation among the 60 amino acids at the amino terminus of the protein, and a high level of conservation from G61, where the critical cellulose-binding domain sequences begin, to the end of the protein (L110). While the region needed to bind to cellulose is conserved, the region that is available to interact with other cell wall components is subject to considerable variation, a feature that is evident even in the related genus Plasmopara. Specific changes can be used in determining intra- and inter-species relatedness. Application of this information allowed for the design of species-specific primers for PCR detection of P. infestans and P. sojae, by combining primers from the highly conserved and variable regions of the CBD1 gene. Electronic supplementary material The online version of this article (doi:10.1007/s00284-017-1315-x) contains supplementary material, which is available to authorized users.

We investigated how a genetically engineered resilin fusion protein modifies cellulose surfaces. We characterized the pH-responsive behavior of a resilin-like polypeptide (RLP) having terminal cellulose binding modules (CBM) and showed its binding to cellulose nanofibrils (CNF). Characterization of the resilin fusion protein at different pHs revealed substantial conformational changes of the protein, which were observed as swelling and contraction of the protein layer bound to the nanocellulose surface. In addition, we showed that employment of the modified resilin in cellulose hydrogel and nanopaper increased their modulus of stiffness through a cross-linking effect.

In this study, four fusion proteins were designed, in which the N-terminal cellulose-binding module as the affinity tag was immobilized on the regenerated amorphous cellulose (RAC), and the release of the C-terminal colored proteins was detected easily and rapidly after on-resin cleavage using the free tobacco etch virus protease (TEVp) variant, or the immobilized cognate protease with a binding capacity of up to 220 mg protein per gram of RAC. The enhanced stability and repetitive use of the immobilized TEVp compensated slight loss of the catalytic efficiency toward the soluble protein substrate. On-resin cleavage and purity of the released target proteins are related to the context of the fusion tag, the incorporated linker composition, and the colored protein. Owing to low cost and high binding capacity of the RAC, the TEVp immobilized on the resin is an ideal alternative for removing fusion tag. The colored proteins are easily monitored in the on-resin process of fusion proteins, and rapid separation from RAC.

Microcrystalline cellulose could be effectively converted into levulinic acid in pure water at 180 °C in 12 h without additives in a maximum yield of 51.5% with a cellulase-mimetic solid acid catalyst prepared without the use of sulfuric acid. Ball-milling pretreatment of cellulose improved levulinic acid yields by only a few percent, showing that the cellulose binding sites (−Cl) and catalytic sites (−SO3H) of the catalyst are key to the activity of the catalyst. The spent catalyst could be regenerated with H2O2 solution after recycling for 5 times to maintain more than 95% of its catalytic activity. Glucose used as starting material under the same reaction conditions and with the same cellulase-mimetic solid acid gave a yield of 61.5% levulinic acid. The conversion route for carbohydrates to levulinic acid in pure water with the biomimetic catalyst prepared with a H2SO4-free method provides an environmentally friendly method for producing biobased-platform chemicals from renewable resources.

The impacts of hydrothermal, mechanical and drying treatments, as representative food processing methods, on cellulose binding capacity for food polyphenols have been assessed using bacterial cellulose hydrogels as a plant cell wall model system. The results show that boiling and autoclaving exert no significant effects on the binding of polyphenols. In contrast, freeze-drying decreases polyphenol adsorption onto cellulose by an order of magnitude. Rehydration of the freeze-dried cellulose prior to soaking in polyphenol solutions halves this effect. The positive correlation between the polyphenol binding capacity and water content suggests that the swelling ability of cellulose networks contributes to polyphenol-cellulose interactions. Characterisation of the multi-scale structure of cellulose hydrogels by combining SEM, XRD, SAXS and SANS indicates that the polyphenol binding capacity is strongly affected by the degree of cellulose microfibril aggregation and the availability of hydroxyl groups in the cellulose structure. The formation of interfibrillar aggregates, connected by a strong hydrogen bonding network as a result of the freeze-drying process, has been shown to limit solvent accessibility towards the interior of cellulose ribbons upon rehydration of the samples. This structural modification can be linked to the large decrease in the adsorption of polyphenols observed for the freeze-dried rehydrated samples.

A new fabrication technology for effective preparation of paper-based biosensors using affinity-binding enzymes is developed. Lactate dehydrogenase (LDH) fused with a cellulose binding domain (CBD) is produced to allow one-step purification and immobilization of the enzyme on paper. Results demonstrate that the binding capacity of the recombinant enzyme is as high as 22 mg-enzyme/g-paper, with much improved stability (by a factor of 25-fold) in comparison to the native parent enzyme. That ensures the solid phase bioassay reactions on surface of the paper sensor are not limited by enzyme availability, and affords much extended sensor shelf life at the same time. The paper sensor shows a linear detection range of 0.5–8 mM of lactate, with changes in color intensity detectable within a much broader concentration range examined (up to 16 mM). The colorimetric display is suited for readouts using either human eyes or hand-held imaging devices such as smart phones. This work promises of a new strategy of developing high performance paper-based sensors for point-of-care diagnosis applications.

Outer membrane vesicles (OMVs) are nanoscale spheres naturally released from Gram-negative bacteria. They contain a diverse array of proteins and lipopolysaccharide but do not replicate, which increases their safety profile and renders them attractive for environmental applications. Herein, an efficient and reusable biocatalyst for enhanced degradation of organophosphate pesticides was developed. Organophosphorus hydrolase (OPH) was tethered onto OMVs via a genetically fused ice nucleation protein (INP) to form OMV-based biocatalysts. To accomplish quick purification and easy recovery of the engineered OMV using cellulose, a cellulose binding module (CBM) was collaterally tethered on the OMV. The OPH-decorated OMVs exhibited an enhanced degradation rate when assayed with paraoxon as a substrate. In addition, the thermal stability and pH tolerance were also enhanced remarkably. Furthermore, the resulting biocatalysts could still retain more than 80% activity even after 15 cycles of recovery and reuse, demonstrating their potential use in bio-catalytic decontamination of organophosphate compounds.