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Nitrogen (N) is an essential but generally limiting nutrient for biological systems. Development of the Haber-Bosch industrial process for ammonia synthesis helped to relieve N limitation of agricultural production, fueling the Green Revolution and reducing hunger. However, the massive use of industrial N fertilizer has doubled the N moving through the global N cycle with dramatic environmental consequences that threaten planetary health. Thus, there is an urgent need to reduce losses of reactive N from agriculture, while ensuring sufficient N inputs for food security. Here we review current knowledge related to N use efficiency (NUE) in agriculture and identify research opportunities in the areas of agronomy, plant breeding, biological N fixation (BNF), soil N cycling, and modeling to achieve responsible, sustainable use of N in agriculture. Amongst these opportunities, improved agricultural practices that synchronize crop N demand with soil N availability are low-hanging fruit. Crop breeding that targets root and shoot physiological processes will likely increase N uptake and utilization of soil N, while breeding for BNF effectiveness in legumes will enhance overall system NUE. Likewise, engineering of novel N-fixing symbioses in non-legumes could reduce the need for chemical fertilizers in agroecosystems but is a much longer-term goal. The use of simulation modeling to conceptualize the complex, interwoven processes that affect agroecosystem NUE, along with multi-objective optimization, will also accelerate NUE gains.

Healthy soils contribute to a wide range of ecosystem services and virtually all of the UN Sustainable Development Goals, but most of the world's soil resources are in only fair, poor, or very poor condition, and conditions are getting worse in more cases than they are improving. A total of 33% of all soils are moderately to highly degraded as a result of erosion, loss of organic matter, poor nutrient balance, salinization and alkalinization, contamination, acidification, loss of biodiversity, sealing, compaction, and poor water status. Best management practices are available to limit or mitigate threats to soil health, and many of them mitigate multiple soil threats. In many regions of the world, policies or initiatives to protect or enhance the status of soils are in place, and they need to be strengthened and enforced. The Food and Agriculture Organisation will publish its second comprehensive assessment of the status of the world's soils in 2025, and this review provides an interim update on world soil status and offers an accessible overview of the topic. [ABSTRACT FROM AUTHOR]

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.

© 2015 US Government Tree species interact with soil biota to impact soil organic carbon (C) pools, but it is unclear how this interaction is shaped by various ecological factors. We used multiple regression to describe how ~100 variables were related to soil organic C pools in a common garden experiment with 14 temperate tree species. Potential predictor variables included: (i) the abundance, chemical composition, and decomposition rates of leaf litter and fine roots, (ii) species richness and abundance of bacteria, fungi, and invertebrate animals in soil, and (iii) measures of soil acidity and texture. The amount of organic C in the organic horizon and upper 20 cm of mineral soil (i.e. the combined C pool) was strongly negatively correlated with earthworm abundance and strongly positively correlated with the abundance of aluminum, iron, and protons in mineral soils. After accounting for these factors, we identified additional correlations with soil biota and with litter traits. Rates of leaf litter decomposition, measured as litter mass loss, were negatively correlated with size of the combined soil organic C pool. Somewhat paradoxically, the combined soil organic C pool was also negatively related to the ratio of recalcitrant compounds to nitrogen in leaf litter. These apparent effects of litter traits probably arose because two independent components of litter “quality” were controlling different aspects of decomposition. Leaf litter mass loss rates were positively related with leaf litter calcium concentrations, reflecting greater utilization and depolymerization of calcium-rich leaf litter by earthworms and other soil biota, which presumably led to greater proportional losses of litter C as CO2 or dissolved organic C. The fraction of depolymerized and metabolized litter that is ultimately lost as CO2 is an inverse function of microbial C use efficiency, which increases with litter nutrient concentrations but decreases with concentrations of recalcitrant compounds (e.g. lignin); thus, high ratios of recalcitrant compounds to nitrogen in leaf litter likely caused a greater fraction of depolymerized litter to be lost as CO2. Existing conceptual models of soil C stabilization need to reconcile the effects of litter quality on these two potentially counteracting factors: rates of litter depolymerization and microbial C use efficiency.

Soil organic carbon (SOC) plays an essential role in mediating community structure and metabolic activities of belowground biota. Unraveling the evolution of belowground communities and their feedback mechanisms on SOC dynamics helps embed the ecology of soil microbiome into carbon cycling, which serves to improve biodiversity conservation and carbon management strategy under global change. Here, croplands with a SOC gradient were used to understand how belowground metabolisms and SOC decomposition were linked to the diversity, composition, and co‐occurrence networks of belowground communities encompassing archaea, bacteria, fungi, protists, and invertebrates. As SOC decreased, the diversity of prokaryotes and eukaryotes also decreased, but their network complexity showed contrasting patterns: prokaryotes increased due to intensified niche overlap, while that of eukaryotes decreased possibly because of greater dispersal limitation owing to the breakdown of macroaggregates. Despite the decrease in biodiversity and SOC stocks, the belowground metabolic capacity was enhanced as indicated by increased enzyme activity and decreased enzymatic stoichiometric imbalance. This could, in turn, expedite carbon loss through respiration, particularly in the slow‐cycling pool. The enhanced belowground metabolic capacity was dominantly driven by greater multitrophic network complexity and particularly negative (competitive and predator–prey) associations, which fostered the stability of the belowground metacommunity. Interestingly, soil abiotic conditions including pH, aeration, and nutrient stocks, exhibited a less significant role. Overall, this study reveals a greater need for soil C resources across multitrophic levels to maintain metabolic functionality as declining SOC results in biodiversity loss. Our researchers highlight the importance of integrating belowground biological processes into models of SOC turnover, to improve agroecosystem functioning and carbon management in face of intensifying anthropogenic land‐use and climate change. [ABSTRACT FROM AUTHOR]

Much research focuses on increasing carbon storage in mineral-associated organic matter (MAOM), in which carbon may persist for centuries to millennia. However, MAOM-targeted management is insufficient because the formation pathways of persistent soil organic matter are diverse and vary with environmental conditions. Effective management must also consider particulate organic matter (POM). In many soils, there is potential for enlarging POM pools, POM can persist over long time scales, and POM can be a direct precursor of MAOM. We present a framework for context-dependent management strategies that recognizes soils as complex systems in which environmental conditions constrain POM and MAOM formation. Increasing C storage in mineral-associated organic matter is insufficient due to diverse, environmentally specific persistent soil organic matter formation. Context-dependent management strategies highlighting the importance of particulate organic matter are necessary. [ABSTRACT FROM AUTHOR]