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Your search keyword '"Cassen V"' showing total 6 results
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6 results on '"Cassen V"'

1. T1DBase: Community Website for Type 1 Diabetes Research: 1063-P

Author

HULBERT, E. M., BURREN, O. S., BURDICK, D. B., HEALY, B. C., CAVNOR, C. C., DOLMAN, G. E., CASSEN, V. M., KJXLCOYNE, S. A., KUTLU, B., RAJAGOPALAN, B., MYCHALECKYJ, J. C., WICKER, L. S., TODD, J. A., GOODMAN, N., and SMINK, L. J.

Published
2006

3. Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation

Author

Wiederkehr, C., Basavaraj, R., de Menthière, C. Sarrauste, Koch, R., Schlecht, U., Hermida, L., Masdoua, B., Ishii, R., Cassen, V., Yamamoto, M., Lane, C., Cherry, M., Lamb, N., Primig, M., Wiederkehr, C., Basavaraj, R., de Menthière, C. Sarrauste, Koch, R., Schlecht, U., Hermida, L., Masdoua, B., Ishii, R., Cassen, V., Yamamoto, M., Lane, C., Cherry, M., Lamb, N., and Primig, M.

Abstract

Summary: GermOnline is a web-accessible relational database that enables life scientists to make a significant and sustained contribution to the annotation of genes relevant for the fields of mitosis, meiosis, germ line development and gametogenesis across species. This novel approach to genome annotation includes a platform for knowledge submission and curation as well as microarray data storage and visualization hosted by a global network of servers. Availability: The database is accessible at http://www.germonline.org/. For convenient world-wide access we have set up a network of servers in Europe (http://germonline.unibas.ch/; http://germonline.igh.cnrs.fr/), Japan (http://germonline.biochem.s.u-tokyo.ac.jp/) and USA (http://germonline.yeastgenome.org/). Supplementary information: Extended documentation of the database is available through the link ‘About GermOnline' at the websites

Published
2017

5. Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation

Author

Wiederkehr, C., Basavaraj, R., de Menthière, C. Sarrauste, Koch, R., Schlecht, U., Hermida, L., Masdoua, B., Ishii, R., Cassen, V., Yamamoto, M., Lane, C., Cherry, M., Lamb, N., Primig, M., Wiederkehr, C., Basavaraj, R., de Menthière, C. Sarrauste, Koch, R., Schlecht, U., Hermida, L., Masdoua, B., Ishii, R., Cassen, V., Yamamoto, M., Lane, C., Cherry, M., Lamb, N., and Primig, M.

Abstract

Summary: GermOnline is a web-accessible relational database that enables life scientists to make a significant and sustained contribution to the annotation of genes relevant for the fields of mitosis, meiosis, germ line development and gametogenesis across species. This novel approach to genome annotation includes a platform for knowledge submission and curation as well as microarray data storage and visualization hosted by a global network of servers. Availability: The database is accessible at http://www.germonline.org/. For convenient world-wide access we have set up a network of servers in Europe (http://germonline.unibas.ch/; http://germonline.igh.cnrs.fr/), Japan (http://germonline.biochem.s.u-tokyo.ac.jp/) and USA (http://germonline.yeastgenome.org/). Supplementary information: Extended documentation of the database is available through the link ‘About GermOnline' at the websites

6. MediaDB: a database of microbial growth conditions in defined media.

Author

Richards MA, Cassen V, Heavner BD, Ajami NE, Herrmann A, Simeonidis E, and Price ND

Subjects
Archaea genetics, Bacteria genetics, Base Sequence, Eukaryotic Cells physiology, Molecular Sequence Data, Archaea growth & development, Bacteria growth & development, Culture Media chemistry, Databases, Factual, Genomics methods
Abstract

Isolating pure microbial cultures and cultivating them in the laboratory on defined media is used to more fully characterize the metabolism and physiology of organisms. However, identifying an appropriate growth medium for a novel isolate remains a challenging task. Even organisms with sequenced and annotated genomes can be difficult to grow, despite our ability to build genome-scale metabolic networks that connect genomic data with metabolic function. The scientific literature is scattered with information about defined growth media used successfully for cultivating a wide variety of organisms, but to date there exists no centralized repository to inform efforts to cultivate less characterized organisms by bridging the gap between genomic data and compound composition for growth media. Here we present MediaDB, a manually curated database of defined media that have been used for cultivating organisms with sequenced genomes, with an emphasis on organisms with metabolic network models. The database is accessible online, can be queried by keyword searches or downloaded in its entirety, and can generate exportable individual media formulation files. The data assembled in MediaDB facilitate comparative studies of organism growth media, serve as a starting point for formulating novel growth media, and contribute to formulating media for in silico investigation of metabolic networks. MediaDB is freely available for public use at https://mediadb.systemsbiology.net.

Published
2014
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