42 results on '"Caroline Beard"'
Search Results
2. Performing the Moor : Disorienting Cultural Burlesque in Cartas marruecas and Aita Tettauen
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Colquhoun, Caroline Beard
- Published
- 2020
3. Performing the Moor: Disorienting Cultural Burlesque in Cartas marruecas and Aita Tettauen
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Caroline Beard Colquhoun
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Literature ,business.industry ,media_common.quotation_subject ,Trope (literature) ,Modernity ,Identity (social science) ,General Medicine ,Art ,Making-of ,Burlesque ,Performativity ,National identity ,Narrative ,business ,media_common - Abstract
Jose Cadalso’s Cartas marruecas (1789) and Benito Perez Galdos’s Aita Tettauen (1905) share a common figure: the ostensibly fake Moor. Through the analytical trope of burlesque performance, I show how the production of Moorish “Otherness” is inextricably entangled with the articulation of Spanish identity in the novels. The epistolary performances of the African Moorish characters alternately spotlight and disguise the making of difference in a process I refer to as “cultural burlesque.” These narrative performances tease the reader with glimpses of purported “authenticity,” cultivating identitary ambiguity in a manner that interrogates and unsettles binary paradigms presumed to be natural or essential (Spanish/Moroccan, European/African, Catholic/Muslim). By calling attention to the performativity of national, cultural, and religious identities, the novels convey critiques of the Spanish societies of both the 18th and 20th centuries; as scholars like Susan Martin-Marquez have noted, politicians and intellectuals in both moments responded to issues of national identity and European modernity through a paradoxical embrace and denial of the Moorish figure—and by extension Spain’s African heritage. The presence of these performances of cultural burlesque in two works separated by more than a century points to a transhistorical Spanish discursive tendency to domesticate and/or colonize the Maghribian Moor in the service of soothing internal and international ills.
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- 2020
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4. The development and validation of a decision aid to enhance shared decision‐making for the management of actinic keratosis
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Geoffrey Brent, Caroline Beardmore, Kate Mayers, Alberto Barea, Venura Samarasinghe, Vanessa Pinder, Julia Soo, Victoria Akhras, and Zainab Jiyad
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Dermatology ,RL1-803 - Abstract
Abstract Actinic keratoses (AKs) are common pre‐malignant lesions. There are numerous management options including active surveillance, multiple topical therapies, cryotherapy, curettage and cautery, and photodynamic therapy, each with their own risks, benefits and efficacy. Best practice currently involves shared decision‐making between patient and clinician, particularly in the setting of multiple management options. Patient decision aids have been shown to be beneficial in the shared decision‐making process. In view of this, we have developed and validated a decision aid for the management of AKs, in concordance with the International Patient Decision Aids Standards.
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- 2024
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5. African Immigrants in Contemporary Spanish Texts: Crossing the Strait Faszer-McMahon Debra Ketz Victoria L.
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Colquhoun, Caroline Beard
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- 2017
6. Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases
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Russell Dekelver, Caroline Beard, Jeffrey C. Miller, Maisam Mitalipova, Frank Soldner, Bryan Zeitler, Ranier Amora, Lei Zhang, Xiangdong Meng, Elizabeth A. Boydston, Rudolf Jaenisch, George E. Katibah, Philip D. Gregory, Fyodor D. Urnov, Edward J. Rebar, Dirk Hockemeyer, and Qing Gao
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Pluripotent Stem Cells ,Recombinant Fusion Proteins ,Transgene ,Green Fluorescent Proteins ,Biomedical Engineering ,Gene Expression ,Bioengineering ,Biology ,Applied Microbiology and Biotechnology ,Article ,Cell Line ,Genome editing ,Humans ,Gene Silencing ,Induced pluripotent stem cell ,Embryonic Stem Cells ,reproductive and urinary physiology ,Homeodomain Proteins ,Genetics ,Zinc finger ,Deoxyribonucleases ,fungi ,Gene targeting ,Zinc Fingers ,Immunohistochemistry ,Zinc finger nuclease ,Embryonic stem cell ,Cell biology ,Gene Targeting ,embryonic structures ,Molecular Medicine ,Stem cell ,Octamer Transcription Factor-3 ,Transcription Factors ,Biotechnology - Abstract
Human embryonic stem cells and induced pluripotent stem cells (hESCs and hiPSCs) are powerful tools for biomedical research. Realizing the full potential of these cells requires efficient genetic modification. However, techniques to generate cell type specific lineage reporters as well as reliable tools to disrupt, repair or overexpress genes by gene targeting are inefficient at best and thus are not routinely used. Here we report the highly efficient targeting of three genes in human pluripotent cells using zinc finger nuclease (ZFN) mediated genome editing. First, using ZFNs specific for the OCT4 locus we generated OCT4-eGFP reporter cells to monitor the pluripotent state of hESCs. Secondly, we inserted a transgene into the AAVS1 locus to generate a robust drug-inducible overexpression system in hESCs. Finally, we targeted the PITX3 gene, demonstrating that ZFNs can be used to generate reporter cells by targeting non-expressed genes in hESCs and hiPSCs.
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- 2009
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7. Partial reversal of Rett Syndrome-like symptoms in MeCP2 mutant mice
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Mriganka Sur, Ruth Flannery, Rudolf Jaenisch, Dong Dong Fu, Cortina L. McCurry, Daniela Tropea, Caroline Beard, Emanuela Giacometti, and Nathan R. Wilson
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congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Dendritic spine ,Methyl-CpG-Binding Protein 2 ,Mutant ,Action Potentials ,Rett syndrome ,Motor Activity ,Biology ,Neurotransmission ,Synaptic Transmission ,MECP2 ,Mice ,Heart Rate ,Internal medicine ,Neuroplasticity ,Rett Syndrome ,medicine ,Animals ,Insulin-Like Growth Factor I ,Neurons ,Multidisciplinary ,Brain ,Organ Size ,Anatomy ,Biological Sciences ,medicine.disease ,Mice, Mutant Strains ,Survival Rate ,Disease Models, Animal ,Treatment Outcome ,Endocrinology ,medicine.anatomical_structure ,Synapse maturation ,Motor cortex - Abstract
Rett Syndrome (RTT) is a severe form of X-linked mental retardation caused by mutations in the gene coding for methyl CpG-binding protein 2 (MECP2). Mice deficient in MeCP2 have a range of physiological and neurological abnormalities that mimic the human syndrome. Here we show that systemic treatment of MeCP2 mutant mice with an active peptide fragment of Insulin-like Growth Factor 1 (IGF-1) extends the life span of the mice, improves locomotor function, ameliorates breathing patterns, and reduces irregularity in heart rate. In addition, treatment with IGF-1 peptide increases brain weight of the mutant mice. Multiple measurements support the hypothesis that RTT results from a deficit in synaptic maturation in the brain: MeCP2 mutant mice have sparse dendritic spines and reduced PSD-95 in motor cortex pyramidal neurons, reduced synaptic amplitude in the same neurons, and protracted cortical plasticity in vivo. Treatment with IGF-1 peptide partially restores spine density and synaptic amplitude, increases PSD-95, and stabilizes cortical plasticity to wild-type levels. Our results thus strongly suggest IGF-1 as a candidate for pharmacological treatment of RTT and potentially of other CNS disorders caused by delayed synapse maturation.
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- 2009
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8. Nanoparticles for Gene Transfer to Human Embryonic Stem Cell Colonies
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Robert Langer, Jordan J. Green, Caroline Beard, Daniel G. Anderson, Maisam Mitalipova, Betty Ying Zhou, and Rudolf Jaenisch
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Polymers ,Cellular differentiation ,Genetic Vectors ,Green Fluorescent Proteins ,Biocompatible Materials ,Bioengineering ,Gene delivery ,Article ,Green fluorescent protein ,Mice ,Cations ,Animals ,Nanotechnology ,General Materials Science ,reproductive and urinary physiology ,Embryonic Stem Cells ,Chemistry ,Hydrolysis ,Mechanical Engineering ,Gene Transfer Techniques ,Cell Differentiation ,General Chemistry ,Transfection ,Flow Cytometry ,Condensed Matter Physics ,Embryonic stem cell ,Molecular biology ,Cell biology ,Genetic Techniques ,Lipofectamine ,Cell culture ,embryonic structures ,Stem cell ,Octamer Transcription Factor-3 - Abstract
We develop biodegradable polymeric nanoparticles to facilitate nonviral gene transfer to human embryonic stem cells (hESCs). Small (approximately 200 nm), positively charged (approximately 10 mV) particles are formed by the self assembly of cationic, hydrolytically degradable poly(beta-amino esters) and plasmid DNA. By varying the end group of the polymer, we can tune the biophysical properties of the resulting nanoparticles and their gene-delivery efficacy. We created an OCT4-driven GFP hES cell line to allow the rapid identification of nanoparticles that facilitate gene transfer while maintaining an hESC undifferentiated state. Using this cell system, we synthesized nanoparticles that have gene delivery efficacy that is up to 4 times higher than that of the leading commercially available transfection agent, Lipofectamine 2000. Importantly, these materials have minimal toxicity and do not adversely affect hESC colony morphology or cause nonspecific differentiation.
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- 2008
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9. Partial rescue of MeCP2 deficiency by postnatal activation of MeCP2
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Sandra Luikenhuis, Emanuela Giacometti, Rudolf Jaenisch, and Caroline Beard
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Male ,congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Methyl-CpG-Binding Protein 2 ,Transgene ,Mutant ,Mice, Transgenic ,Rett syndrome ,Biology ,medicine.disease_cause ,MECP2 ,Mice ,Neurodevelopmental disorder ,Internal medicine ,mental disorders ,Rett Syndrome ,medicine ,Animals ,Mice, Knockout ,Regulation of gene expression ,Mutation ,Multidisciplinary ,Biological Sciences ,medicine.disease ,Molecular biology ,nervous system diseases ,Mice, Inbred C57BL ,Disease Models, Animal ,Endocrinology ,Animals, Newborn ,Gene Expression Regulation ,Targeted Mutation ,Mice, Inbred DBA ,Female - Abstract
In humans, mutations in the X-linked MECP2 gene, are the cause of Rett syndrome (RTT), a neurodevelopmental disorder that affects mainly girls. MeCP2 binds to methylated CpGs and is thought to act as a transcriptional repressor. In male mice, deletion or targeted mutation of Mecp2 leads to lethality and causes a neuronal phenotype. Selective mutation of Mecp2 in postnatal neurons results in a similar, although delayed, phenotype, suggesting that the symptoms are caused by MeCP2 deficiency in postmitotic neurons. In agreement with this idea, expression of a Mecp2 transgene in postmitotic neurons of Mecp2 -null mutant mice resulted in the phenotypical rescue of the symptoms. To assess whether postnatal activation of MeCP2 in mutant animals could also affect the progression of the disorder, we constructed a conditionally active Mecp2 “rescue transgene” that was activated between P0 and P30. The Mecp2 transgene was under the control of the CAGGS promoter and was activated by using brain specific Cre-mediated recombination. Our results indicate that postnatal, neuron-specific activation of MeCP2 as late as 2–4 weeks of age significantly prolonged the lifespan of mutant animals and delayed the onset of neurologic symptoms.
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- 2007
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10. DNA Methylation by DNA Methyltransferase 1 Is Critical for Effector CD8 T Cell Expansion
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Joshy Jacob, Rudolph Jaenisch, Craig P. Chappell, Caroline Beard, and John D. Altman
- Subjects
DNA (Cytosine-5-)-Methyltransferase 1 ,T cell ,Immunology ,Mice, Transgenic ,CD8-Positive T-Lymphocytes ,In Vitro Techniques ,Lymphocytic Choriomeningitis ,Biology ,Lymphocyte Activation ,DNA methyltransferase ,Mice ,Interleukin 21 ,medicine ,Animals ,Lymphocytic choriomeningitis virus ,Immunology and Allergy ,Cytotoxic T cell ,DNA (Cytosine-5-)-Methyltransferases ,IL-2 receptor ,Antigens, Viral ,Cell Proliferation ,Mice, Knockout ,ZAP70 ,Cell Differentiation ,DNA Methylation ,Molecular biology ,medicine.anatomical_structure ,DNA methylation ,Cancer research ,Immunologic Memory ,CD8 - Abstract
Transcriptional silencing mediated by DNA methylation is a critical component of epigenetic regulation during early embryonic development in animals. However, the requirement for DNA methylation during activation and differentiation of mature CD8+ T cells into effector and memory cells is not clear. Using cre-mediated deletion of DNA methyltransferase 1 (Dnmt1) at the time of CD8+ T cell activation, we investigated the obligation for maintaining patterns of DNA methylation during the generation of Ag-specific effector and memory CD8+ T cells in response to acute viral infection of mice with lymphocytic choriomeningitis virus. Dnmt1−/− CD8+ T cells failed to undergo the massive CD8+ T cell expansion characteristic of lymphocytic choriomeningitis virus infection, leading to >80% reductions in Ag-specific effector CD8+ T cells at the height of the response. Despite this, Dnmt1−/− CD8+ T cells efficiently controlled the viral infection. Interestingly, the number of Ag-specific Dnmt1−/− memory CD8+ T cells was moderately reduced compared with the reductions seen at day 8 postinfection. Our data suggest that ablation of Dnmt1 and subsequent DNA methylation affect the finite proliferative potential of Ag-specific CD8+ T cells with moderate effects on their differentiation to effector and memory CD8+ T cells.
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- 2006
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11. Ectopic Expression of Oct-4 Blocks Progenitor-Cell Differentiation and Causes Dysplasia in Epithelial Tissues
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Rudolf Jaenisch, Konrad Hochedlinger, Caroline Beard, and Yasuhiro Yamada
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genetic structures ,Somatic cell ,Cellular differentiation ,Green Fluorescent Proteins ,Gene Expression ,Mice, Transgenic ,Oct-4 ,Biology ,medicine.disease_cause ,Epithelium ,General Biochemistry, Genetics and Molecular Biology ,Mice ,Neoplasms ,medicine ,Animals ,Cell Lineage ,Intestinal Mucosa ,Progenitor cell ,beta Catenin ,Skin ,Genetics ,Biochemistry, Genetics and Molecular Biology(all) ,Stem Cells ,Cell Differentiation ,medicine.disease ,Embryonic stem cell ,eye diseases ,Cell biology ,DNA-Binding Proteins ,Gastrointestinal Tract ,Intestines ,Cytoskeletal Proteins ,Dysplasia ,Doxycycline ,Trans-Activators ,Ectopic expression ,sense organs ,Carcinogenesis ,Octamer Transcription Factor-3 ,Transcription Factors - Abstract
Summary The POU-domain transcription factor Oct-4 is normally expressed in pluripotent cells of the mammalian embryo. In addition, germ-cell tumors and a few somatic tumors show detectable expression of Oct-4 . While Oct-4's role during preimplantation development is to maintain embryonic cells in a pluripotent state, little is known about its potential oncogenic properties. Here we investigate the effect of ectopic Oct-4 expression on somatic tissues of adult mice using a doxycycline-dependent expression system. Activation of Oct-4 results in dysplastic growths in epithelial tissues that are dependent on continuous Oct-4 expression. Dysplastic lesions show an expansion of progenitor cells and increased β-catenin transcriptional activity. In the intestine, Oct-4 expression causes dysplasia by inhibiting cellular differentiation in a manner similar to that in embryonic cells. These data show that certain adult progenitors remain competent to interpret key embryonic signals and support the notion that progenitor cells are a driving force in tumorigenesis.
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- 2005
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12. Development and maintenance of B and T lymphocytes requires antiapoptotic MCL-1
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Joseph T. Opferman, Stanley J. Korsmeyer, Mia D. Sorcinelli, Christy C. Ong, Caroline Beard, and Anthony Letai
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BH3 Mimetic ABT-737 ,Cell Survival ,T-Lymphocytes ,Lymphocyte ,Antigens, CD19 ,Cellular homeostasis ,Apoptosis ,Thymus Gland ,Biology ,Mice ,Viral Proteins ,Immune system ,hemic and lymphatic diseases ,medicine ,Animals ,Cell Lineage ,RNA, Messenger ,Alleles ,Cells, Cultured ,B-Lymphocytes ,Multidisciplinary ,Integrases ,Stem Cells ,Lymphocyte differentiation ,Cell Differentiation ,T lymphocyte ,Cell cycle ,Neoplasm Proteins ,Cell biology ,Antiapoptotic Agent ,medicine.anatomical_structure ,Proto-Oncogene Proteins c-bcl-2 ,Organ Specificity ,Attachment Sites, Microbiological ,Cytokines ,Myeloid Cell Leukemia Sequence 1 Protein ,Gene Deletion ,Spleen - Abstract
Regulated apoptosis is essential for both the development and the subsequent maintenance of the immune system. Interleukins, including IL-2, IL-4, IL-7 and IL-15, heavily influence lymphocyte survival during the vulnerable stages of VDJ rearrangement and later in ensuring cellular homeostasis, but the genes specifically responsible for the development and maintenance of lymphocytes have not been identified. The antiapoptotic protein MCL-1 is an attractive candidate, as it is highly regulated, appears to enhance short-term survival and functions at an apical step in genotoxic deaths. However, Mcl-1 deficiency results in peri-implantation lethality. Here we show that mice conditional for Mcl-1 display a profound reduction in B and T lymphocytes when MCL-1 is removed. Deletion of Mcl-1 during early lymphocyte differentiation increased apoptosis and arrested the development at pro-B-cell and double-negative T-cell stages. Induced deletion of Mcl-1 in peripheral B- and T-cell populations resulted in their rapid loss. Moreover, IL-7 both induced and required MCL-1 to mediate lymphocyte survival. Thus, MCL-1, which selectively inhibits the proapoptotic protein BIM, is essential both early in lymphoid development and later on in the maintenance of mature lymphocytes.
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- 2003
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13. Introduction of artificial light at night increases the abundance of predators, scavengers, and parasites in arthropod communities
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Jeffrey A. Brown, Julie L. Lockwood, Max R. Piana, and Caroline Beardsley
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Environmental science ,Ecology ,Entomology ,Science - Abstract
Summary: While recent studies explore the negative impacts of light pollution on arthropods, few studies investigated community-level responses to artificial light. Using an array of landscaping lights and pitfall traps, we track community composition over 15 consecutive days and nights, including a five-night pre-light period, a five-night during-light period, and a five-night post-light period. Our results highlight a trophic-level response to artificial nighttime lighting with shifts in the presence and abundance of predators, scavengers, parasites, and herbivores. We show that associated trophic shifts occurred immediately upon the introduction of artificial light at night and are limited to nocturnal communities. Lastly, trophic levels reverted to their pre-light state, suggesting many short-term changes in communities are likely the result of behavioral shifts. These trophic shifts may become common as light pollution increases, implicating artificial light as a cause of global arthropod community change and highlighting light pollution’s role in global herbivorous arthropod decline.
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- 2023
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14. Transgenic mice with defined combinations of drug-inducible reprogramming factors
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Christopher J. Lengner, John P. Cassady, Su Wu, Qing Gao, Caroline Beard, Jacob H. Hanna, Rudolf Jaenisch, Dongdong Fu, Jessica Dausman, Albert W. Cheng, Styliani Markoulaki, and Bryce W. Carey
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Male ,Pluripotent Stem Cells ,Cellular differentiation ,Transgene ,Kruppel-Like Transcription Factors ,Biomedical Engineering ,Mice, Transgenic ,Bioengineering ,Biology ,Applied Microbiology and Biotechnology ,Article ,Germline ,Proto-Oncogene Proteins c-myc ,Kruppel-Like Factor 4 ,Mice ,03 medical and health sciences ,Chimera (genetics) ,0302 clinical medicine ,Proviruses ,SOX2 ,Animals ,Induced pluripotent stem cell ,Cells, Cultured ,030304 developmental biology ,Genetics ,0303 health sciences ,Chimera ,SOXB1 Transcription Factors ,fungi ,Cell Differentiation ,Fibroblasts ,3. Good health ,Cell biology ,Genetic Techniques ,KLF4 ,Doxycycline ,030220 oncology & carcinogenesis ,Molecular Medicine ,Female ,Octamer Transcription Factor-3 ,Reprogramming ,Transcription Factors ,Biotechnology - Abstract
Proviruses carrying drug-inducible Oct4, Sox2, Klf4 and c-Myc used to derive 'primary' induced pluripotent stem (iPS) cells were segregated through germline transmission, generating mice and cells carrying subsets of the reprogramming factors. Drug treatment produced 'secondary' iPS cells only when the missing factor was introduced. This approach creates a defined system for studying reprogramming mechanisms and allows screening of genetically homogeneous cells for compounds that can replace any transcription factor required for iPS cell derivation.
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- 2009
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15. Germ Line Transmission of a Yeast Artificial Chromosome Spanning the Murine α 1 (I) Collagen Locus
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Jeanne B. Lawrence, Caroline Beard, William M. Strauss, Rudolf Jaenisch, Carol V. Johnson, and Jessica Dausman
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Yeast artificial chromosome ,Genetically modified mouse ,Transgene ,Mutant ,Gene Expression ,Mice, Transgenic ,Molecular cloning ,Biology ,Transfection ,Polymerase Chain Reaction ,Mice ,Animals ,Genomic library ,Gene ,In Situ Hybridization ,Gene Library ,Mice, Inbred BALB C ,Multidisciplinary ,Genetic transfer ,Molecular biology ,Mice, Inbred C57BL ,Blotting, Southern ,Mutagenesis, Insertional ,Blastocyst ,Collagen ,Chromosomes, Fungal ,Polymorphism, Restriction Fragment Length - Abstract
Molecular complementation of mutant phenotypes by transgenic technology is a potentially important tool for gene identification. A technology was developed that allows the transfer of a physically intact yeast artificial chromosome (YAC) into the germ line of the mouse. A purified 150-kilobase YAC encompassing the murine gene Col1a1 was efficiently introduced into embryonic stem (ES) cells via lipofection. Chimeric founder mice were derived from two transfected ES cell clones. These chimeras transmitted the full length transgene through the germ line, generating two transgenic mouse strains. Transgene expression was visualized as nascent transcripts in interphase nuclei and quantitated by ribonuclease protection analysis. Both assays indicated that the transgene was expressed at levels comparable to the endogenous collagen gene.
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- 1993
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16. A single-gene transgenic mouse strain for reprogramming adult somatic cells
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Styliani Markoulaki, Jacob H. Hanna, Rudolf Jaenisch, Caroline Beard, and Bryce W. Carey
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Genetically modified mouse ,Somatic cell ,Transgene ,Induced Pluripotent Stem Cells ,Locus (genetics) ,Mice, Transgenic ,Biology ,Biochemistry ,Article ,Mice ,Animals ,Transgenes ,Induced pluripotent stem cell ,Molecular Biology ,Cells, Cultured ,Regulation of gene expression ,Genetics ,Recombination, Genetic ,Induced stem cells ,Genome ,Integrases ,fungi ,food and beverages ,Cell Biology ,Cell Dedifferentiation ,Cellular Reprogramming ,Mutagenesis, Insertional ,Gene Expression Regulation ,Organ Specificity ,Doxycycline ,Reprogramming ,Biotechnology - Abstract
We report a novel transgenic mouse model for direct reprogramming of somatic cells by expressing four reprogramming factors from a single genomic locus using a drug-inducible transgene. Multiple somatic cell types explanted from different tissues can generate induced pluripotent stem cells (iPSC) by culture in doxycycline (Dox). Because the reprogramming factors are carried on a single polycistronic construct the transgenic mice can be easily maintained and transferred into another background.
- Published
- 2009
17. Analysis of splice junctions and in Vitro and in Vivo translation potential of the small, abundant B19 parvovirus RNAs
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Keith Humphries, Caroline R. Astell, Caroline Beard, and Jan St. Amand
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Reticulocytes ,Polyadenylation ,Immunoprecipitation ,RNA Splicing ,Molecular Sequence Data ,Biology ,Transfection ,Parvoviridae ,Cell Line ,Open Reading Frames ,Viral Proteins ,Exon ,Virology ,Chlorocebus aethiops ,Gene expression ,Animals ,Humans ,Amino Acid Sequence ,Antigens, Viral ,COS cells ,Base Sequence ,cDNA library ,RNA ,Molecular biology ,Molecular Weight ,Solubility ,Protein Biosynthesis ,DNA, Viral ,RNA splicing ,RNA, Viral ,Rabbits - Abstract
Two parvovirus 1319 cDNA libraries have been constructed; one from COS-7 cells transfected with a B19/pSVOd hybrid vector and the other from B19-infected human erythroid leukemic cells. We have used these libraries to investigate the expression of the abundant classes of polyadenylated 1319 RNAs; the 700- and 800-nt class which terminates in the middle of the genome and the 500- and 600-nt class which contains an ORF from the extreme right-hand end of the genome. The 700- and 800-nt RNA species were not found in the COS cell library, suggesting that a variant polyadenylation signal (ATTAAA or AATAAC) in the middle of the genome is not efficiently recognized in these cells. In contrast, the 700- and 800-nt class was highly represented in the human library, confirming the use of this variant polyadenylation signal in the normal host cell of the virus. In COS cells the middle exon of the 500- and 600-nt class of RNA exhibited variability in both splice donor and acceptor sites. However, in human cells there were only two splice acceptor sites nt 1910 and 2030, and a single splice donor site nt 2183 for this exon. Antisera, prepared against a peptide derived from the 94-aa potential protein encoded by the 500- and 600-nt class of RNA, recognized, on a Western blot, a polypeptide of approximately 11 kDa that was translated in vitro from these cDNAs and in vivo in pSVOd/B19 transfected COS cells. Immunoprecipitation revealed that two proteins were made from this ORF, suggesting the use of internal translation initiation site(s). Another antisera, raised against a second peptide corresponding to an antigenic region of the potential protein encoded by the 700- and 800-nt class of RNA, failed to detect a 15-kDa protein by Western blotting or immunoprecipitation of labeled proteins both in vitro and in vivo in COS cells.
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- 1991
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18. Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors
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Ole Isacson, Alexandra Blak, Qing Gao, Dirk Hockemeyer, Maisam Mitalipova, Oliver Cooper, Rudolf Jaenisch, Elizabeth G. Cook, George W. Bell, Caroline Beard, Gunnar Hargus, and Frank Soldner
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Pluripotent Stem Cells ,Parkinson's disease ,Somatic cell ,Transgene ,Cellular differentiation ,Dopamine ,Cell ,HUMDISEASE ,DEVBIO ,Biology ,Bioinformatics ,General Biochemistry, Genetics and Molecular Biology ,Article ,Malignant transformation ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,medicine ,Humans ,Induced pluripotent stem cell ,030304 developmental biology ,Neurons ,0303 health sciences ,Biochemistry, Genetics and Molecular Biology(all) ,Cell Differentiation ,Parkinson Disease ,Fibroblasts ,medicine.disease ,Cellular Reprogramming ,STEMCELL ,Cell biology ,3. Good health ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer research ,Reprogramming ,030217 neurology & neurosurgery - Abstract
SummaryInduced pluripotent stem cells (iPSCs) derived from somatic cells of patients represent a powerful tool for biomedical research and may provide a source for replacement therapies. However, the use of viruses encoding the reprogramming factors represents a major limitation of the current technology since even low vector expression may alter the differentiation potential of the iPSCs or induce malignant transformation. Here, we show that fibroblasts from five patients with idiopathic Parkinson's disease can be efficiently reprogrammed and subsequently differentiated into dopaminergic neurons. Moreover, we derived hiPSCs free of reprogramming factors using Cre-recombinase excisable viruses. Factor-free hiPSCs maintain a pluripotent state and show a global gene expression profile, more closely related to hESCs than to hiPSCs carrying the transgenes. Our results indicate that residual transgene expression in virus-carrying hiPSCs can affect their molecular characteristics and that factor-free hiPSCs therefore represent a more suitable source of cells for modeling of human disease.
- Published
- 2008
19. Treatment of sickle cell anemia mouse model with iPS cells generated from autologous skin
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Li-Chen Wu, Chiao-Wang Sun, Marius Wernig, Styliani Markoulaki, Rudolf Jaenisch, Jacob H. Hanna, John P. Cassady, Caroline Beard, Tobias Brambrink, Alexander Meissner, and Tim M. Townes
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Male ,Pluripotent Stem Cells ,Cellular differentiation ,Hemoglobin, Sickle ,Genes, myc ,Kruppel-Like Transcription Factors ,Anemia, Sickle Cell ,Biology ,Cell therapy ,Kidney Concentrating Ability ,Kruppel-Like Factor 4 ,Mice ,Transduction, Genetic ,Animals ,Humans ,Progenitor cell ,Induced pluripotent stem cell ,Cells, Cultured ,Embryonic Stem Cells ,Multidisciplinary ,SOXB1 Transcription Factors ,Hematopoietic Stem Cell Transplantation ,Cell Differentiation ,Hemoglobin A ,Fibroblasts ,Cellular Reprogramming ,Hematopoietic Stem Cells ,Embryonic stem cell ,Globins ,Hematopoiesis ,Transplantation ,DNA-Binding Proteins ,Disease Models, Animal ,Multipotent Stem Cell ,Immunology ,Cancer research ,Erythrocyte Count ,Trans-Activators ,Reprogramming ,Octamer Transcription Factor-3 - Abstract
It has recently been demonstrated that mouse and human fibroblasts can be reprogrammed into an embryonic stem cell–like state by introducing combinations of four transcription factors. However, the therapeutic potential of such induced pluripotent stem (iPS) cells remained undefined. By using a humanized sickle cell anemia mouse model, we show that mice can be rescued after transplantation with hematopoietic progenitors obtained in vitro from autologous iPS cells. This was achieved after correction of the human sickle hemoglobin allele by gene-specific targeting. Our results provide proof of principle for using transcription factor–induced reprogramming combined with gene and cell therapy for disease treatment in mice. The problems associated with using retroviruses and oncogenes for reprogramming need to be resolved before iPS cells can be considered for human therapy.
- Published
- 2007
20. Mammalian X Chromosome Inactivation
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Caroline Beard, Rudolf Jaenisch, Jeannie T. Lee, Barbara Panning, and York Marahrens
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Genetics ,Yeast artificial chromosome ,Untranslated RNA ,Chemistry ,DNA methylation ,RNA ,XIST ,Gene ,X chromosome ,X-inactivation ,Cell biology - Abstract
X chromosome inactivation in mammals requires expression of the gene Xist, which maps to the X chromosome inactivation centre (Xic) and encodes an untranslated RNA. Truncation of Xist RNA by gene targeting is lethal for female embryos and prevents the inactivation of the X chromosome carrying the deletion. This indicates that Xist RNA is necessary for initiation and propagation of the inactivation process. Xist is transcribed from the inactive X and its expression is silenced by DNA methylation, suggesting that methylation is crucial for shielding the active X chromosome against the inactivation process. Gene transfer experiments using transgenes the size of yeast artificial chromosomes have determined that a 450 kb fragment of DNA carrying Xist acts as an inactivation centre and is sufficient for initiation, propagation and maintenance of the inactive state. The elements for counting and choosing X chromosomes are part of the transgene. We have shown that X inactivation is mediated by a post-translational mechanism, i.e. the stabilization of Xist RNA, rather than by the regulation of the Xist promoter.
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- 2007
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21. Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells
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Konrad Hochedlinger, Caroline Beard, Kathrin Plath, Anton Wutz, and Rudolf Jaenisch
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Genetics ,Genetically modified mouse ,Recombination, Genetic ,Epidermal Growth Factor ,Transgene ,Stem Cells ,Mice, Transgenic ,Cell Biology ,Biology ,Tetracycline ,Embryo, Mammalian ,Flow Cytometry ,Embryonic stem cell ,Collagen Type I ,Cell biology ,Mice ,Endocrinology ,Recombinase ,Animals ,Site-specific recombination ,Homologous recombination ,Gene ,Alleles ,Homing (hematopoietic) - Abstract
Transgenic and gene-targeted mutant mice provide powerful tools for analysis of the cellular processes involved in early development and in the pathogenesis of many diseases. Here we describe a transgene integration strategy mediated by site-specific recombination that allows establishment of multiple embryonic stem (ES) cell lines carrying tetracycline-inducible genes targeted to a specific locus to assure predictable temporal and spatial expression in ES cells and mice. Using homologous recombination we inserted an frt homing site into which tetracycline-inducible transgenes can be integrated efficiently in the presence of FLPe recombinase. This strategy and the vectors described here are generally applicable to any locus in ES cells and should allow for the rapid production of mice with transgenes efficiently targeted to a defined site.
- Published
- 2006
22. Expression of MeCP2 in postmitotic neurons rescues Rett syndrome in mice
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Rudolf Jaenisch, Emanuela Giacometti, Sandra Luikenhuis, and Caroline Beard
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Male ,congenital, hereditary, and neonatal diseases and abnormalities ,Chromosomal Proteins, Non-Histone ,Methyl-CpG-Binding Protein 2 ,Transgene ,Repressor ,Mitosis ,Rett syndrome ,Mice, Transgenic ,tau Proteins ,Biology ,medicine.disease_cause ,MECP2 ,Mice ,Neurodevelopmental disorder ,Gene expression ,mental disorders ,medicine ,Rett Syndrome ,Animals ,DNA Primers ,Neurons ,Mutation ,Multidisciplinary ,Base Sequence ,Biological Sciences ,medicine.disease ,Phenotype ,Immunohistochemistry ,Cell biology ,nervous system diseases ,DNA-Binding Proteins ,Repressor Proteins ,nervous system ,Cancer research ,Female - Abstract
Mutations in MECP2 are the cause of Rett syndrome (RTT) in humans, a neurodevelopmental disorder that affects mainly girls. MeCP2 is a protein that binds CpG dinucleotides and is thought to act as a global transcriptional repressor. It is highly expressed in neurons, but not in glia, of the postnatal brain. The timing of MeCP2 activation correlates with the maturation of the central nervous system, and recent reports suggest that MeCP2 may be involved in the formation of synaptic contacts and may function in activity-dependent neuronal gene expression. Deletion or targeted mutation of Mecp2 in mice leads to a Rett-like phenotype. Selective mutation of Mecp2 in postnatal neurons leads to a similar, although delayed, phenotype, suggesting that MeCP2 plays a role in postmitotic neurons. Here we test the hypothesis that the symptoms of RTT are exclusively caused by a neuronal MeCP2 deficiency by placing Mecp2 expression under the control of a neuron-specific promoter. Expression of the Mecp2 transgene in postmitotic neurons resulted in symptoms of severe motor dysfunction. Transgene expression in Mecp2 mutant mice, however, rescued the RTT phenotype.
- Published
- 2004
23. LabPipe: an extensible bioinformatics toolkit to manage experimental data and metadata
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Bo Zhao, Luke Bryant, Rebecca Cordell, Michael Wilde, Dahlia Salman, Dorota Ruszkiewicz, Wadah Ibrahim, Amisha Singapuri, Tim Coats, Erol Gaillard, Caroline Beardsmore, Toru Suzuki, Leong Ng, Neil Greening, Paul Thomas, Paul Monks, Christopher Brightling, Salman Siddiqui, and Robert C. Free
- Subjects
Metadata ,Data management ,Biomedical ,Breathomics ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Data handling in clinical bioinformatics is often inadequate. No freely available tools provide straightforward approaches for consistent, flexible metadata collection and linkage of related experimental data generated locally by vendor software. Results To address this problem, we created LabPipe, a flexible toolkit which is driven through a local client that runs alongside vendor software and connects to a light-weight server. The toolkit allows re-usable configurations to be defined for experiment metadata and local data collection, and handles metadata entry and linkage of data. LabPipe was piloted in a multi-site clinical breathomics study. Conclusions LabPipe provided a consistent, controlled approach for handling metadata and experimental data collection, collation and linkage in the exemplar study and was flexible enough to deal effectively with different data handling challenges.
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- 2020
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24. DNA hypomethylation perturbs the function and survival of CNS neurons in postnatal animals
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Marina S. Siniaia, Ralf Kühn, Peggy P. Lee, Chi-Sang Poon, Györgyi Csankovszki, Andreas Trumpp, Rudolf Jaenisch, Guoping Fan, Brian Bates, Caroline Beard, Richard Z. Chen, Christopher B. Wilson, Detlev Biniszkiewicz, and Yi Sun
- Subjects
Nervous system ,Central Nervous System ,DNA (Cytosine-5-)-Methyltransferase 1 ,Cell Survival ,Cell Count ,Mice, Transgenic ,Biology ,medicine.disease_cause ,DNA methyltransferase ,environment and public health ,Mice ,Neuroblast ,medicine ,Animals ,DNA (Cytosine-5-)-Methyltransferases ,ARTICLE ,Cells, Cultured ,Crosses, Genetic ,Neurons ,Mutation ,Cell Death ,urogenital system ,Mosaicism ,General Neuroscience ,Stem Cells ,Neurodegenerative Diseases ,DNA Methylation ,Molecular biology ,Cell biology ,Electrophysiology ,medicine.anatomical_structure ,Animals, Newborn ,DNA methylation ,embryonic structures ,Gene Targeting ,DNMT1 ,Respiratory Insufficiency ,Neural development ,DNA hypomethylation - Abstract
DNA methyltransferase I (Dnmt1), the maintenance enzyme for DNA cytosine methylation, is expressed at high levels in the CNS during embryogenesis and after birth. Because embryos deficient for Dnmt1 die at gastrulation, the role of Dnmt1 in the development and function of the nervous system could not be studied by using this mutation. We therefore used the cre/loxP system to produce conditional mutants that lack Dnmt1 in neuroblasts of embryonic day 12 embryos or in postmitotic neurons of the postnatal animal. Conditional deletion of the Dnmt1 gene resulted in rapid depletion of Dnmt1 proteins, indicating that the enzyme in postmitotic neurons turns over quickly. Dnmt1 deficiency in postmitotic neurons neither affected levels of global DNA methylation nor influenced cell survival during postnatal life. In contrast, Dnmt1 deficiency in mitotic CNS precursor cells resulted in DNA hypomethylation in daughter cells. Whereas mutant embryos carrying 95% hypomethylated cells in the brain died immediately after birth because of respiratory distress, mosaic animals with 30% hypomethylated CNS cells were viable into adulthood. However, these mutant cells were eliminated quickly from the brain within 3 weeks of postnatal life. Thus, hypomethylated CNS neurons were impaired functionally and were selected against at postnatal stages.
- Published
- 2001
25. Loss of genomic methylation causes p53-dependent apoptosis and epigenetic deregulation
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Jessica Dausman, Douglas Fambrough, Caroline Beard, Richard Possemato, Rudolf Jaenisch, Laurie Jackson-Grusby, Christopher B. Wilson, Peggy Lee, Györgyi Csankovszki, Matthew Tudor, and Eric S. Lander
- Subjects
DNA (Cytosine-5-)-Methyltransferase 1 ,Apoptosis ,Biology ,DNA methyltransferase ,Evolution, Molecular ,Genomic Imprinting ,Mice ,Viral Proteins ,Genetics ,Animals ,Epigenetics ,DNA (Cytosine-5-)-Methyltransferases ,RNA, Messenger ,Alleles ,Cells, Cultured ,Cell Line, Transformed ,Oligonucleotide Array Sequence Analysis ,Regulation of gene expression ,Recombination, Genetic ,Genome ,Integrases ,Gene Expression Profiling ,Stem Cells ,Methylation ,DNA Methylation ,Fibroblasts ,Molecular biology ,Gene expression profiling ,Genes, Intracisternal A-Particle ,Gene Expression Regulation ,DNA methylation ,Attachment Sites, Microbiological ,DNMT1 ,Tumor Suppressor Protein p53 ,Genomic imprinting ,Cell Division ,Gene Deletion - Abstract
Cytosine methylation of mammalian DNA is essential for the proper epigenetic regulation of gene expression and maintenance of genomic integrity. To define the mechanism through which demethylated cells die, and to establish a paradigm for identifying genes regulated by DNA methylation, we have generated mice with a conditional allele for the maintenance DNA methyltransferase gene Dnmt1. Cre-mediated deletion of Dnmt1 causes demethylation of cultured fibroblasts and a uniform p53-dependent cell death. Mutational inactivation of Trp53 partially rescues the demethylated fibroblasts for up to five population doublings in culture. Oligonucleotide microarray analysis showed that up to 10% of genes are aberrantly expressed in demethylated fibroblasts. Our results demonstrate that loss of Dnmt1 causes cell-type-specific changes in gene expression that impinge on several pathways, including expression of imprinted genes, cell-cycle control, growth factor/receptor signal transduction and mobilization of retroelements.
- Published
- 2001
26. V(D)J recombination is not activated by demethylation of the kappa locus
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David Baltimore, Caroline Beard, Sara Cherry, and Rudolf Jaenisch
- Subjects
DNA (Cytosine-5-)-Methyltransferase 1 ,Transcriptional Activation ,Cre recombinase ,Locus (genetics) ,Biology ,Immunoglobulin kappa-Chains ,Mice ,Viral Proteins ,Transcription (biology) ,Animals ,Gene Rearrangement, B-Lymphocyte, Light Chain ,DNA (Cytosine-5-)-Methyltransferases ,VDJ Recombinases ,Floxing ,Demethylation ,Cell Line, Transformed ,Recombination, Genetic ,B-Lymphocytes ,Multidisciplinary ,Genes, Immunoglobulin ,Integrases ,V(D)J recombination ,Methylation ,Biological Sciences ,DNA Methylation ,Molecular biology ,DNA methylation ,DNA Nucleotidyltransferases ,Caltech Library Services - Abstract
V(D)J recombination is thought to be regulated by changes in the accessibility of target sites, such as modulation of methylation. To test whether demethylation of the kappa locus can activate recombination, we generated two recombinationally active B cell lines in which the gene for maintenance of genomic DNA methylation, Dnmt1 , was flanked with loxP sites. Transduction with a retrovirus expressing both the cre recombinase and green fluorescent protein allowed us to purify recombinationally active cells devoid of methylation. Loss of methylation of the kappa locus was not sufficient to activate recombination, although transcription was activated in one line. It appears that demethylation of the kappa locus is not the rate-limiting step for altering accessibility and thus regulated demethylation does not generate specificity of recombination.
- Published
- 2000
27. DNA hypomethylation leads to elevated mutation rates
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Richard Z. Chen, Laurie Jackson-Grusby, Caroline Beard, Ulf Pettersson, and Rudolf Jaenisch
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Genome instability ,Male ,Hypoxanthine Phosphoribosyltransferase ,Biology ,medicine.disease_cause ,DNA methyltransferase ,Polymerase Chain Reaction ,Thymidine Kinase ,Cell Line ,Mice ,Gene duplication ,medicine ,Animals ,DNA (Cytosine-5-)-Methyltransferases ,Mutation ,Multidisciplinary ,Stem Cells ,Herpes Simplex ,DNA ,DNA Methylation ,Molecular biology ,Mice, Inbred C57BL ,Blotting, Southern ,DNA methylation ,DNMT1 ,Carcinogenesis ,DNA hypomethylation - Abstract
Genome-wide demethylation has been suggested to be a step in carcinogenesis. Evidence for this notion comes from the frequently observed global DNA hypomethylation in tumour cells, and from a recent study suggesting that defects in DNA methylation might contribute to the genomic instability of some colorectal tumour cell lines. DNA hypomethylation has also been associated with abnormal chromosomal structures, as observed in cells from patients with ICF (Immunodeficiency, Centromeric instability and Facial abnormalities) syndrome and in cells treated with the demethylating agent 5-azadeoxycytidine. Here we report that murine embryonic stem cells nullizygous for the major DNA methyltransferase (Dnmt1) gene exhibited significantly elevated mutation rates at both the endogenous hypoxanthine phosphoribosyltransferase (Hprt) gene and an integrated viral thymidine kinase (tk) transgene. Gene deletions were the predominant mutations at both loci. The major cause of the observed tk deletions was either mitotic recombination or chromosomal loss accompanied by duplication of the remaining chromosome. Our results imply an important role for mammalian DNA methylation in maintaining genome stability.
- Published
- 1998
28. Loss of methylation activates Xist in somatic but not in embryonic cells
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Caroline Beard, Rudolf Jaenisch, and En Li
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Male ,RNA, Untranslated ,X Chromosome ,Genotype ,Transcription, Genetic ,Molecular Sequence Data ,Biology ,Methylation ,X-inactivation ,Cell Line ,Mice ,Ribonucleases ,Transcription (biology) ,Genetics ,Animals ,Gene ,DNA Modification Methylases ,X chromosome ,DNA Primers ,Base Sequence ,Stem Cells ,Homozygote ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Embryo, Mammalian ,Molecular biology ,Blotting, Southern ,DNA methylation ,Mutation ,XIST ,Female ,RNA, Long Noncoding ,Tsix ,Developmental Biology ,Transcription Factors - Abstract
The mouse Xist gene, which is expressed only from the inactive X chromosome, is thought to play a role in the initiation of X inactivation. The 5' end of this gene is fully methylated on the active X chromosome and completely demethylated on the inactive X chromosome, suggesting that DNA methylation may be involved in controlling allele-specific transcription of this gene. To directly investigate the importance of DNA methylation in the control of Xist expression, we have examined its methylation patterns and expression in ES cells and embryos that are deficient in DNA methyltransferase activity. We report here that demethylation of the Xist locus in male mutant embryos induces Xist expression, thus establishing a direct link between demethylation and expression of the Xist gene in the postgastrulation embryo. The transcriptional activity of Xist in undifferentiated ES cells, however, appears to be independent of its methylation status. These results suggest that methylation may only become essential for Xist repression after ES cells have differentiated or after the embryo has undergone gastrulation.
- Published
- 1995
29. Role for DNA methylation in genomic imprinting
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Caroline Beard, Rudolf Jaenisch, and En Li
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Male ,Parents ,Mutant ,Biology ,Genome ,DNA methyltransferase ,Methylation ,Embryonic and Fetal Development ,Mice ,Genetics ,Animals ,Epigenetics ,Allele ,Gene ,RNA-Directed DNA Methylation ,DNA Modification Methylases ,Alleles ,Regulation of gene expression ,Multidisciplinary ,Homozygote ,DNA ,Mice, Mutant Strains ,CpG site ,Gene Expression Regulation ,DNA methylation ,Illumina Methylation Assay ,Female ,Genomic imprinting - Abstract
The paternal and maternal genomes are not equivalent and both are required for mammalian development. The difference between the parental genomes is believed to be due to gamete-specific differential modification, a process known as genomic imprinting. The study of transgene methylation has shown that methylation patterns can be inherited in a parent-of-origin-specific manner, suggesting that DNA methylation may play a role in genomic imprinting. The functional significance of DNA methylation in genomic imprinting was strengthened by the recent finding that CpG islands (or sites) in three imprinted genes, H19, insulin-like growth factor 2 (Igf-2), and Igf-2 receptor (Igf-2r), are differentially methylated depending on their parental origin. We have examined the expression of these three imprinted genes in mutant mice that are deficient in DNA methyltransferase activity. We report here that expression of all three genes was affected in mutant embryos: the normally silent paternal allele of the H19 gene was activated, whereas the normally active paternal allele of the Igf-2 gene and the active maternal allele of the Igf-2r gene were repressed. Our results demonstrate that a normal level of DNA methylation is required for controlling differential expression of the paternal and maternal alleles of imprinted genes.
- Published
- 1993
30. The Role of K-ras Signaling in Erythropoiesis In Vivo
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Tyler Jacks, Yangang Liu, Rudolf Jaenisch, Harvey F. Lodish, Jing Zhang, and Caroline Beard
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Immunology ,Myeloid leukemia ,Stem cell factor ,Cell Biology ,Hematology ,Biology ,Biochemistry ,Molecular biology ,Cell biology ,Haematopoiesis ,hemic and lymphatic diseases ,Mitogen-activated protein kinase ,biology.protein ,Erythropoiesis ,Signal transduction ,Protein kinase B ,STAT5 - Abstract
K-ras plays an important role in hematopoiesis. K-ras-deficient mouse embryos die around E12-E13 with severe anemia. In humans, oncogenic mutations in K-ras gene are identified in ~30% of patients with acute myeloid leukemia. We used mouse primary erythroid progenitors as a model system to study the role of K-ras signaling in vivo. Both Epo- and stem cell factor (SCF) - dependent Akt activation are greatly reduced in K-ras-/- fetal liver cells, whereas other cytokine- induced pathways, including Stat5 and p44/p42 MAP kinase, are activated normally. The reduced Akt activation in erythroid progenitors per se leads to delayed erythroid differentiation. Our data identify K-ras as the major regulator for cytokine-dependent Akt activation, which is important for erythroid differentiation in vivo. Overexpression of oncogenic Ras in primary fetal erythroid progenitors led to their continual proliferation and a block in terminal erythroid differentiation. Similarly, we found that primary fetal liver cells expressing oncogenic K-ras from its endogenous locus undergo abnormal proliferation and terminal erythroid differentiation is partially blocked. We are currently investigating the signal transduction pathways activated by this oncogenic K-ras that underlies these cellular phenotypes.
- Published
- 2005
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31. Use of the ReCIVA device in breath sampling of patients with acute breathlessness: a feasibility study
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Karl A. Holden, Wadah Ibrahim, Dahlia Salman, Rebecca Cordell, Teresa McNally, Bharti Patel, Rachael Phillips, Caroline Beardsmore, Michael Wilde, Luke Bryant, Amisha Singapuri, Paul Monks, Chris Brightling, Neil Greening, Paul Thomas, Salman Siddiqui, and Erol A. Gaillard
- Subjects
Medicine - Abstract
Introduction Investigating acute multifactorial undifferentiated breathlessness and understanding the driving inflammatory processes can be technically challenging in both adults and children. Being able to validate noninvasive methods such as breath analysis would be a huge clinical advance. The ReCIVA® device allows breath samples to be collected directly onto sorbent tubes at the bedside for analysis of exhaled volatile organic compounds (eVOCs). We aimed to assess the feasibility of using this device in acutely breathless patients. Methods Adults hospitalised with acute breathlessness and children aged 5–16 years with acute asthma or chronic stable asthma, as well as healthy adult and child volunteers, were recruited. Breath samples were collected onto sorbent tubes using the ReCIVA® device and sent for analysis by means of two-dimensional gas chromatography-mass spectrometry (GCxGC-MS). The NASA Task Load Index (NASA-TLX) was used to assess the perceived task workload of undertaking sampling from the patient's perspective. Results Data were available for 65 adults and 61 children recruited. In total, 98.4% of adults and 75.4% of children were able to provide the full target breath sample using the ReCIVA® device. NASA-TLX measurements were available in the adult population with mean values of 3.37 for effort, 2.34 for frustration, 3.8 for mental demand, 2.8 for performance, 3.9 for physical demand and 2.8 for temporal demand. Discussion This feasibility study demonstrates it is possible and acceptable to collect breath samples from both adults and children at the bedside for breathomics analysis using the ReCIVA® device.
- Published
- 2020
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32. Nanoparticles for Gene Transfer to Human Embryonic Stem Cell Colonies.
- Author
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Jordan J. Green, Betty Y. Zhou, Maisam M. Mitalipova, Caroline Beard, Robert Langer, Rudolf Jaenisch, and Daniel G.
- Published
- 2008
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33. Efficient method to generate single‐copy transgenic mice by site‐specific integration in embryonic stem cells.
- Author
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Caroline Beard, Konrad Hochedlinger, Kathrin Plath, Anton Wutz, and Rudolf Jaenisch
- Published
- 2006
- Full Text
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34. In vitro identification of a B19 parvovirus promoter
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Matthew C. Blundell, Caroline Beard, and Caroline R. Astell
- Subjects
Genetics ,Base Sequence ,Genes, Viral ,Transcription, Genetic ,biology ,Parvovirus ,viruses ,Nucleic acid sequence ,virus diseases ,Promoter ,biology.organism_classification ,Molecular biology ,Parvoviridae ,Upstream Enhancer ,Primer extension ,Open reading frame ,Enhancer Elements, Genetic ,Transcription (biology) ,Virology ,Run-off transcription ,DNA, Viral ,Humans ,Promoter Regions, Genetic - Abstract
The nucleotide sequence of the B19-Wi isolate of human parvovirus was determined and compared throughout the open reading frames and putative transcription signals with the sequence of the closely related B19-Au isolate. In vitro run off transcription assays, using B19-Wi DNA as the template, indicated that there is a strong promoter between m.u. 5 and 7. Deletion clones show that a region between nt 258 and 321 is necessary for in vitro transcriptional activity. Primer extension studies identified the start site at 31–32 nucleotides downstream of the sequence TATATATA. The strength of this left-hand promoter is unusual among parvovirus promoters characterized to date, and the possibility of an upstream enhancer element is discussed.
- Published
- 1987
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- View/download PDF
35. Transient expression of B19 parvovirus gene products in COS-7 cells transfected with B19-SV40 hybrid vectors
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J St Amand, Caroline R. Astell, and Caroline Beard
- Subjects
DNA Replication ,Transcription, Genetic ,RNA Splicing ,viruses ,Blotting, Western ,Genetic Vectors ,Gene Expression ,Biology ,Transfection ,Virus Replication ,Parvoviridae ,Cell Line ,Frameshift mutation ,Gene product ,Viral Proteins ,Plasmid ,Virology ,Gene expression ,Humans ,Vector (molecular biology) ,Gene ,virus diseases ,Blotting, Northern ,Molecular biology ,Viral replication ,DNA, Viral ,RNA, Viral ,Plasmids - Abstract
Hybrid B19 parvovirus-SV40 origin vectors were transfected into COS-7 cells and replication of these plasmids studied. Plasmids that have a frameshift mutation within the nonstructural gene region replicated to high level (copy number approximately 10,000/transfected cell) although somewhat lower than pSVOd, the SV40 origin vector without B19 sequence (copy number approximately 100,000/transfected cell). However, hybrid B19 parvovirus-SV40 origin vectors that do not contain these frameshift mutations replicated to a much lower level (copy number approximately 1000/transfected cell). Although the hybrid vectors studied replicated at different efficiencies in COS-7 cells, they are transcribed at approximately the same level, resulting in RNA species that are indistinguishable from those seen in B19 virus-infected erythroid bone marrow cells. Western blot analysis demonstrated that the mRNAs are translated into polypeptides of the same size and, in the case of viral structural proteins, in same relative abundance as seen in a B19-infected clinical sample.
- Published
- 1989
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36. Peer Group Support for Psychology Technicians
- Author
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RUTH EVANS and CAROLINE BEARD
- Published
- 1989
- Full Text
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37. Isolation and characterization of the SPT2 gene, a negative regulator of Ty-controlled yeast gene expression
- Author
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G. Shirleen Roeder, Caroline Beard, Michael Smith, and Sirkka Keranen
- Subjects
Transcription, Genetic ,Genes, Fungal ,Chromosome Mapping ,Cell Biology ,DNA Restriction Enzymes ,Fungal Proteins ,Gene Expression Regulation ,Genes, Regulator ,Mutation ,DNA Transposable Elements ,Histidine ,Amino Acid Sequence ,Cloning, Molecular ,Codon ,DNA, Fungal ,Molecular Biology ,Research Article - Abstract
The his4-917 mutation of Saccharomyces cerevisiae results from the insertion of the Ty element Ty917 into the regulatory region of the HIS4 gene and renders the cell His-. The hist4-912 delta mutant, which carries a solo delta in the 5'-noncoding region of HIS4, is His+ at 37 degrees C but His- at 23 degrees C. Both these mutations interfere with HIS4 expression at the transcriptional level. The His- phenotype of both insertion mutations is suppressed by mutations at the SPT2 locus. The product of the wild-type SPT2 gene apparently represses HIS4 transcription in these mutant strains; this repression is relieved when the SPT2 gene is destroyed by mutation. The repression of transcription by SPT2 presumably results from an interaction between the SPT2+ gene product and Ty or delta sequences. In this paper, we report the cloning and DNA sequence analysis of the wild-type SPT2 gene and show that the gene is capable of encoding a protein of 333 amino acids in length. In addition, we show that a dominant mutation of the SPT2 gene results from the generation of an ochre codon which is presumed to lead to a shortened SPT2 gene product.
- Published
- 1985
38. The Transition between Early and Middle Gene Expression in the Development of Phage SP01: Physiological and Biochemical Aspects
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Barry K. Chelm, Jonathan R. Greene, Caroline Beard, and E. Peter Geiduschek
- Subjects
Transition (genetics) ,Gene expression ,Biology ,Cell biology - Published
- 1982
- Full Text
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39. Challenges in Collating Spirometry Reference Data for South-Asian Children: An Observational Study.
- Author
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Sooky Lum, Vassiliki Bountziouka, Philip Quanjer, Samatha Sonnappa, Angela Wade, Caroline Beardsmore, Sunil K Chhabra, Rajesh K Chudasama, Derek G Cook, Seeromanie Harding, Claudia E Kuehni, K V V Prasad, Peter H Whincup, Simon Lee, and Janet Stocks
- Subjects
Medicine ,Science - Abstract
MethodsSpirometry datasets from South-Asian children were collated from four centres in India and five within the UK. Records with transcription errors, missing values for height or spirometry, and implausible values were excluded(n = 110).ResultsFollowing exclusions, cross-sectional data were available from 8,124 children (56.3% male; 5-17 years). When compared with GLI-predicted values from White Europeans, forced expired volume in 1s (FEV1) and forced vital capacity (FVC) in South-Asian children were on average 15% lower, ranging from 4-19% between centres. By contrast, proportional reductions in FEV1 and FVC within all but two datasets meant that the FEV1/FVC ratio remained independent of ethnicity. The 'GLI-Other' equation fitted data from North India reasonably well while 'GLI-Black' equations provided a better approximation for South-Asian data than the 'GLI-White' equation. However, marked discrepancies in the mean lung function z-scores between centres especially when examined according to socio-economic conditions precluded derivation of a single South-Asian GLI-adjustment.ConclusionUntil improved and more robust prediction equations can be derived, we recommend the use of 'GLI-Black' equations for interpreting most South-Asian data, although 'GLI-Other' may be more appropriate for North Indian data. Prospective data collection using standardised protocols to explore potential sources of variation due to socio-economic circumstances, secular changes in growth/predictors of lung function and ethnicities within the South-Asian classification are urgently required.
- Published
- 2016
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40. Amnioinfusion in preterm premature rupture of membranes (AMIPROM): a randomised controlled trial of amnioinfusion versus expectant management in very early preterm premature rupture of membranes – a pilot study
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Devender Roberts, Sarah Vause, William Martin, Pauline Green, Stephen Walkinshaw, Leanne Bricker, Caroline Beardsmore, Ben NJ Shaw, Andrew McKay, Gaynor Skotny, Paula Williamson, and Zarko Alfirevic
- Subjects
randomised controlled trial ,amnioinfusion ,expectant management ,premature rupture ,membranes ,preterm prelabour rupture ,pilot study ,Medical technology ,R855-855.5 - Abstract
Background: Fetal survival is severely compromised when the amniotic membrane ruptures between 16 and 24 weeks of pregnancy. Reduced amniotic fluid levels are associated with poor lung development, whereas adequate levels lead to better perinatal outcomes. Restoring amniotic fluid by means of ultrasound-guided amnioinfusion (AI) may be of benefit in improving perinatal and long-term outcomes in children of pregnancies with this condition. Objective: The AI in preterm premature rupture of membranes (AMIPROM) pilot study was conducted to assess the feasibility of recruitment, the methods for conduct and the retention through to long-term follow-up of participants with very early rupture of amniotic membranes (between 16 and 24 weeks of pregnancy). It was also performed to assess outcomes and collect data to inform a larger, more definitive, clinical trial. Design: A prospective, non-blinded randomised controlled trial. A computer-generated random sequence using a 1 : 1 ratio was used. Randomisation was stratified for pregnancies in which the amniotic membrane ruptured between 16+0 and 19+6 weeks’ gestation and 20+0 and 24+0 weeks’ gestation. The randomisation sequence was generated in blocks of four. Telephone randomisation and intention-to-treat analysis were used. Setting: Four UK hospital-based fetal medicine units – Liverpool Women’s NHS Trust, St. Mary’s Hospital, Manchester, Birmingham Women’s NHS Foundation Trust and Wirral University Hospitals Trust. Participants: Women with confirmed preterm prelabour rupture of membranes between 16+0 and 24+0 weeks’ gestation. Women with multiple pregnancies, resultant fetal abnormalities or obstetric indication for immediate delivery were excluded. Interventions: Participants were randomly allocated to either serial weekly transabdominal AI or expectant management (Exp) until 37 weeks of pregnancy, if the deepest pool of amniotic fluid was
- Published
- 2014
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41. Copy number variation of the beta-defensin genes in europeans: no supporting evidence for association with lung function, chronic obstructive pulmonary disease or asthma.
- Author
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Louise V Wain, Linda Odenthal-Hesse, Razan Abujaber, Ian Sayers, Caroline Beardsmore, Erol A Gaillard, Sally Chappell, Cristian M Dogaru, Tricia McKeever, Tamar Guetta-Baranes, Noor Kalsheker, Claudia E Kuehni, Ian P Hall, Martin D Tobin, and Edward J Hollox
- Subjects
Medicine ,Science - Abstract
Lung function measures are heritable, predict mortality and are relevant in diagnosis of chronic obstructive pulmonary disease (COPD). COPD and asthma are diseases of the airways with major public health impacts and each have a heritable component. Genome-wide association studies of SNPs have revealed novel genetic associations with both diseases but only account for a small proportion of the heritability. Complex copy number variation may account for some of the missing heritability. A well-characterised genomic region of complex copy number variation contains beta-defensin genes (DEFB103, DEFB104 and DEFB4), which have a role in the innate immune response. Previous studies have implicated these and related genes as being associated with asthma or COPD. We hypothesised that copy number variation of these genes may play a role in lung function in the general population and in COPD and asthma risk. We undertook copy number typing of this locus in 1149 adult and 689 children using a paralogue ratio test and investigated association with COPD, asthma and lung function. Replication of findings was assessed in a larger independent sample of COPD cases and smoking controls. We found evidence for an association of beta-defensin copy number with COPD in the adult cohort (OR = 1.4, 95%CI:1.02-1.92, P = 0.039) but this finding, and findings from a previous study, were not replicated in a larger follow-up sample(OR = 0.89, 95%CI:0.72-1.07, P = 0.217). No robust evidence of association with asthma in children was observed. We found no evidence for association between beta-defensin copy number and lung function in the general populations. Our findings suggest that previous reports of association of beta-defensin copy number with COPD should be viewed with caution. Suboptimal measurement of copy number can lead to spurious associations. Further beta-defensin copy number measurement in larger sample sizes of COPD cases and children with asthma are needed.
- Published
- 2014
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42. Direct Reprogramming of Terminally Differentiated Mature B Lymphocytes to Pluripotency
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John P. Cassady, Bryce W. Carey, Jessica Dausman, Patrick Schorderet, Ruth K. Foreman, Christopher J. Lengner, Menno P. Creyghton, Rudolf Jaenisch, Caroline Beard, Jacob H. Hanna, Styliani Markoulaki, Eveline J. Steine, and Marius Wernig
- Subjects
Pluripotent Stem Cells ,PAX5 Transcription Factor ,Cellular differentiation ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Kruppel-Like Factor 4 ,Mice ,SOX2 ,Animals ,Humans ,Induced pluripotent stem cell ,Embryonic Stem Cells ,Cell Nucleus ,Genetics ,B-Lymphocytes ,Biochemistry, Genetics and Molecular Biology(all) ,Cell Differentiation ,STEMCELL ,Embryonic stem cell ,Cell biology ,CELLIMMUNO ,KLF4 ,CELLBIO ,Ectopic expression ,Reprogramming ,Transcription Factors - Abstract
Pluripotent cells can be derived from fibroblasts by ectopic expression of defined transcription factors. A fundamental unresolved question is whether terminally differentiated cells can be reprogrammed to pluripotency. We utilized transgenic and inducible expression of four transcription factors (Oct4, Sox2, Klf4, and c-Myc) to reprogram mouse B lymphocytes. These factors were sufficient to convert nonterminally differentiated B cells to a pluripotent state. However, reprogramming of mature B cells required additional interruption with the transcriptional state maintaining B cell identity by either ectopic expression of the myeloid transcription factor CCAAT/enhancer-binding-protein-alpha (C/EBPalpha) or specific knockdown of the B cell transcription factor Pax5. Multiple iPS lines were clonally derived from both nonfully and fully differentiated B lymphocytes, which gave rise to adult chimeras with germline contribution, and to late-term embryos when injected into tetraploid blastocysts. Our study provides definite proof for the direct nuclear reprogramming of terminally differentiated adult cells to pluripotency.
- Full Text
- View/download PDF
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