25 results on '"Carnachan SM"'
Search Results
2. Ulvans are not equal - Linkage and substitution patterns in ulvan polysaccharides differ with Ulva morphology.
- Author
-
Kidgell JT, Glasson CRK, Magnusson M, Sims IM, Hinkley SFR, de Nys R, and Carnachan SM
- Subjects
- Polysaccharides chemistry, Sulfates chemistry, Ulva chemistry, Seaweed
- Abstract
Ulva are hardy green seaweeds that contain the sulfated polysaccharide ulvan and grow in two distinct morphologies: foliose and tubular. The authors hypothesise that ulvan from tubular species are more structurally complex than ulvans from foliose species. Herein, using standardised methods, the glycosyl linkage positions and sulfate ester substitutions of constituent monosaccharides of ulvan isolated from foliose (U. lacinulata and U. stenophylloides) and tubular (U. prolifera and U. ralfsii) species of Ulva were investigated. Comparison of native ulvans with 80 and 100 °C desulfated counterparts indicated that 4-linked rhamnose is predominantly 3-O-sulfated in all four ulvans. Ulvans from the foliose species predominantly contained →3,4)-Rhap-(1→, →4)-GlcAp-(1→ and →4)-IdoAp-(1→, collectively accounting for 67 to 81 mol% of the total linkages. In contrast, these same linkages in ulvans from the tubular species only collectively accounted for 29 to 36 mol%. Instead, ulvan from tubular species contained a combination of →2,3,4)-Rhap-(1→, terminal Rhap-(1→, →4)-GlcAp-(1→, →4)-Xylp-(1→, and/or →4)-Galp-(1→ in high proportions; some of the latter three residues were also likely O-2 sulfated. The results presented here suggest that ulvan from foliose species are predominantly unbranched polysaccharides composed of repeat disaccharides while ulvans from tubular species contain a greater diversity of branch and sulfate substitution locations., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
3. Fractionation and characterisation of pectin-rich extracts from garlic biomass.
- Author
-
Sunanta P, Rose Sommano S, Luiten CA, Ghofrani M, Sims IM, Bell TJ, Carnachan SM, Hinkley SFR, and Kontogiorgos V
- Subjects
- Biomass, Pectins chemistry, Polysaccharides chemistry, Galactose chemistry, Garlic
- Abstract
Polysaccharides from garlic waste leaf and skin biomass have been isolated using a sequential extraction protocol and characterised using constituent sugar composition and linkage analysis, spectroscopy, chromatography and dilute solution viscometry. The results revealed that the isolated polysaccharides were predominantly pectins. The predominant monosaccharide in all samples was galacturonic acid (>61 %), followed by galactose and rhamnose. The pectins extracted from skin biomass were mainly homogalacturonan (83-91 %), whereas those extracted from leaf biomass comprised both homogalacturonan (62-65 %) and rhamnogalacturonan-I (35-38 %). The degree of methyl esterification of uronic acids in all samples was 44-56 %. The peak molecular weight of the main polysaccharide population in each sample was ∼ 350 x10
3 g/mol, with leaf extracts and the skin acidic extract containing a second, lower molecular weight peak. Overall, waste garlic biomass is a potential resource for commercial pectin extraction for use in food or pharmaceutical industries., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
4. Variability in the composition of porcine mucosal heparan sulfates.
- Author
-
Sargison L, Smith RAA, Carnachan SM, Daines AM, Brackovic A, Kidgell JT, Nurcombe V, Cool SM, Sims IM, and Hinkley SFR
- Subjects
- Animals, Disaccharides analysis, Factor Xa chemistry, Intercellular Signaling Peptides and Proteins chemistry, Swine, Anticoagulants chemistry, Heparitin Sulfate chemistry, Intestinal Mucosa chemistry
- Abstract
Commercial porcine intestinal mucosal heparan sulfate (HS) is a valuable material for research into its biological functions. As it is usually produced as a side-stream of pharmaceutical heparin manufacture, its chemical composition may vary from batch to batch. We analysed the composition and structure of nine batches of HS from the same manufacturer. Statistical analysis of the disaccharide compositions placed these batches in three categories: group A had high GlcNAc and GlcNS, and low GlcN typical of HS; group B had high GlcN and GlcNS, and low GlcNAc; group C had high di- and trisulfated, and low unsulfated and monosulfated disaccharide repeats. These batches could be placed in the same categories based on their
1 H NMR spectra and molecular weights. Anticoagulant and growth factor binding activities of these HS batches did not fit within these same groups but were related to the proportions of more highly sulfated disaccharide repeats., (Copyright © 2021. Published by Elsevier Ltd.)- Published
- 2022
- Full Text
- View/download PDF
5. Structural characterization of ulvans extracted from blade (Ulva ohnoi) and filamentous (Ulva tepida and Ulva prolifera) species of cultivated Ulva.
- Author
-
Glasson CRK, Luiten CA, Carnachan SM, Daines AM, Kidgell JT, Hinkley SFR, Praeger C, Andrade Martinez M, Sargison L, Magnusson M, de Nys R, and Sims IM
- Subjects
- Antioxidants chemistry, Molecular Structure, Polysaccharides chemistry, Ulva metabolism
- Abstract
Ulvans from Ulva ohnoi, Ulva tepida and Ulva prolifera were extracted under mild acidic conditions, isolated and their composition and structure determined. The ulvans contained mostly rhamnose (31.6-46.7 mol%) and glucuronic acid (26.6-37.5 mol%), with smaller amounts of xylose (3.4-10.4 mol%) and iduronic acid (3.1-7.6 mol%). In addition, the ulvan samples also contained galactose (4.4-26.0 mol%). Glycosyl linkage analysis showed that ulvan from U. ohnoi contained mostly →4)-GlcpA-(1→ and →3,4)-Rhap-(1→. Preparation of partially methylated alditol acetate standards of idose showed that U. ohnoi contained →4)-IdopA-(1→. In addition to these residues, glycosyl linkage analysis of U. tepida and U. prolifera showed the presence of →2,3,4)-Rhap-(1→, →4)-Xylp-(1→, →2,4)-GlcpA-(1→ and →3,4)-GlcpA-(1→. These two species also contained galactose linkages. These data, together with nuclear magnetic resonance (NMR) spectroscopy indicated that U. ohnoi comprised mostly of type A
3S ulvanobiuronic acid repeats [→4)-β-D-GlcpA-(1→4)-α-L-Rhap3S-(1→], together with smaller amounts of type B3S ulvanobiuronic acid repeats [→4)-α-L-IdopA-(1→4)-α-L-Rhap3S-(1→] and ulvanobiose (U3S [→4)-β-D-Xylp-(1→4)-α-L-Rhap3S-(1→]). NMR spectra of U. tepida and U. prolifera showed resonances not detected in U. ohnoi, highlighting the complexity of the ulvans from these species. Regardless of the structural diversity of the ulvan samples there was very little antioxidant or inhibitory activity detected on enzymatic processes investigated., (Copyright © 2021. Published by Elsevier B.V.)- Published
- 2022
- Full Text
- View/download PDF
6. Are all ulvans equal? A comparative assessment of the chemical and gelling properties of ulvan from blade and filamentous Ulva.
- Author
-
Kidgell JT, Carnachan SM, Magnusson M, Lawton RJ, Sims IM, Hinkley SFR, de Nys R, and Glasson CRK
- Subjects
- Cell Wall chemistry, Iduronic Acid analysis, Molecular Weight, Multivariate Analysis, New Zealand, Polysaccharides isolation & purification, Rheology methods, Spectroscopy, Fourier Transform Infrared methods, Sulfates chemistry, Polysaccharides chemistry, Seaweed chemistry, Ulva chemistry
- Abstract
Green seaweeds of the genus Ulva are rich in the bioactive sulfated polysaccharide ulvan. Herein we characterise ulvan from Ulva species collected from the Bay of Plenty, Aotearoa New Zealand. Using standardised procedures, we quantified, characterised, and compared ulvans from blade (U. australis, U. rigida, U. sp. B, and Ulva sp.) and filamentous (U. flexuosa, U. compressa, U. prolifera, and U. ralfsii) Ulva species. There were distinct differences in composition and structure of ulvans between morphologies. Ulvan isolated from blade species had higher yields (14.0-19.3 %) and iduronic acid content (IdoA = 7-18 mol%), and lower molecular weight (Mw = 190-254 kDa) and storage moduli (G' = 0.1-6.6 Pa) than filamentous species (yield = 7.2-14.6 %; IdoA = 4-7 mol%; Mw = 260-406 kDa; G' = 22.7-74.2 Pa). These results highlight the variability of the physicochemical properties of ulvan from different Ulva sources, and identifies a morphology-based division within the genus Ulva., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
7. The molecular weight of ulvan affects the in vitro inflammatory response of a murine macrophage.
- Author
-
Kidgell JT, Glasson CRK, Magnusson M, Vamvounis G, Sims IM, Carnachan SM, Hinkley SFR, Lopata AL, de Nys R, and Taki AC
- Subjects
- Animals, Cell Survival drug effects, Glucuronic Acid, Iduronic Acid, Immunologic Factors pharmacology, Interleukin-1beta, Interleukin-6, Lipopolysaccharides adverse effects, Mice, Molecular Weight, Peptide Fragments, RAW 264.7 Cells, Rhamnose, Seaweed chemistry, Xylose, Macrophages drug effects, Polysaccharides chemistry, Polysaccharides pharmacology, Ulva chemistry
- Abstract
Ulvan, a sulfated polysaccharide extracted from the green seaweed genus Ulva, has bioactive properties including an immunomodulating capacity. The immunomodulatory capacity of ulvan from Ulva ohnoi, however, has not been assessed in detail. We depolymerised purified ulvan from U. ohnoi to obtain a range of molecular weight fractions (M
w 7, 9, 13, 21, 209 kDa), which were characterised by constituent sugar analysis, SEC-MALLS, and NMR. Ulvan fractions contained 48.8-54.7 mol% rhamnose, 32.5-35.9 mol% glucuronic acid, 4.5-7.3 mol% iduronic acid, and 3.3-5.6 mol% xylose.1 H and13 C NMR was consistent with hydrolysis occurring at the anomeric centre without further modification to the oligosaccharide structure. The in vitro immunomodulatory effect of ulvan fractions was quantified by measuring levels of inflammatory-mediating signalling molecules released from LPS-stimulated RAW264.7 murine macrophages. All ulvan fractions showed no toxicity on RAW264.7 cells at concentrations below 100 μg mL-1 over 48 h. Secreted interleukin-10 and prostaglandin E2 demonstrated an anti-inflammatory effect by higher molecular weight ulvan fractions at 100 μg mL-1 . To a lesser extent, these fractions also enhanced the LPS-induced inflammation through minor increases of IL-1β and IL-6. This study confirms that ulvan from U. ohnoi has a mild in vitro immunomodulatory effect., Competing Interests: Declaration of competing interest The authors declare there are no conflicts of interest, and no informed consent, human or animal right are applicable to this research., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
8. Polysaccharide Structures in the Outer Mucilage of Arabidopsis Seeds Visualized by AFM.
- Author
-
Williams MAK, Cornuault V, Irani AH, Symonds VV, Malmström J, An Y, Sims IM, Carnachan SM, Sallé C, and North HM
- Subjects
- Polysaccharides, Seeds, Arabidopsis, Arabidopsis Proteins
- Abstract
Evidence is presented that the polysaccharide rhamnogalacturonan I (RGI) can be biosynthesized in remarkably organized branched configurations and surprisingly long versions and can self-assemble into a plethora of structures. AFM imaging has been applied to study the outer mucilage obtained from wild-type (WT) and mutant ( bxl1-3 and cesa5-1 ) Arabidopsis thaliana seeds. For WT mucilage, ordered, multichain structures of the polysaccharide RGI were observed, with a helical twist visible in favorable circumstances. Molecular dynamics (MD) simulations demonstrated the stability of several possible multichain complexes and the possibility of twisted fibril formation. For bxl1-3 seeds, the imaged polymers clearly showed the presence of side chains. These were surprisingly regular and well organized with an average length of ∼100 nm and a spacing of ∼50 nm. The heights of the side chains imaged were suggestive of single polysaccharide chains, while the backbone was on average 4 times this height and showed regular height variations along its length consistent with models of multichain fibrils examined in MD. Finally, in mucilage extracts from cesa5-1 seeds, a minor population of chains in excess of 30 μm long was observed.
- Published
- 2020
- Full Text
- View/download PDF
9. Utilization of Complex Pectic Polysaccharides from New Zealand Plants ( Tetragonia tetragonioides and Corynocarpus laevigatus ) by Gut Bacteroides Species.
- Author
-
Centanni M, Carnachan SM, Bell TJ, Daines AM, Hinkley SFR, Tannock GW, and Sims IM
- Subjects
- Bacteroides metabolism, Fermentation, Fruit chemistry, Gastrointestinal Microbiome physiology, New Zealand, Pectins analysis, Pectins chemistry, Plant Leaves chemistry, Polysaccharides chemistry, Polysaccharides isolation & purification, Aizoaceae chemistry, Bacteroides growth & development, Magnoliopsida chemistry, Pectins metabolism, Polysaccharides metabolism
- Abstract
Pectic polysaccharides from New Zealand (NZ) spinach ( Tetragonia tetragonioides ) and karaka berries ( Corynocarpus laevigatus ) were extracted and analyzed. NZ spinach polysaccharides comprised mostly homogalacturonan (64.4%) and rhamnogalacturonan I (5.8%), with side chains of arabinan (8.1%), galactan (2.2%), and type II arabinogalactan (7.1%); karaka berry polysaccharides comprised homogalacturonan (21.8%) and rhamnogalacturonan I (10.0%), with greater proportions of side chains (arabinan, 15.6%; galactan, 23.8%; and type II arabinogalactan, 19.3%). Screening of gut commensal Bacteroides showed that six were able to grow on the NZ spinach extract, while five were able to grow on the karaka berry extract. Analysis of the polysaccharides remaining after fermentation, by size-exclusion chromatography and constituent sugar analysis, showed that the Bacteroides species that grew on these two substrates showed preferences for the different pectic polysaccharide types. Our data suggest that, to completely degrade and utilize the complex pectin structures found in plants, members of Bacteroides and other bowel bacteria work as metabolic consortia.
- Published
- 2019
- Full Text
- View/download PDF
10. Polysaccharides from New Zealand Native Plants: A Review of Their Structure, Properties, and Potential Applications.
- Author
-
Carnachan SM, Bell TJ, Hinkley SFR, and Sims IM
- Abstract
Water-soluble, non-starch polysaccharides from plants are used commercially in a wide range of food and non-food applications. The increasing range of applications for natural polysaccharides means that there is growing demand for plant-derived polysaccharides with different functionalities. The geographical isolation of New Zealand and its unique flora presents opportunities to discover new polysaccharides with novel properties for a range of applications. This review brings together data published since the year 2000 on the composition and structure of exudate gums, mucilages, and storage polysaccharides extracted from New Zealand endemic land plants. The structures and properties of these polysaccharides are compared with the structures of similar polysaccharides from other plants. The current commercial use of these polysaccharides is reviewed and their potential for further exploitation discussed.
- Published
- 2019
- Full Text
- View/download PDF
11. Characterization of Polysaccharides from Feijoa Fruits ( Acca sellowiana Berg.) and Their Utilization as Growth Substrates by Gut Commensal Bacteroides Species.
- Author
-
Bell TJ, Draper SL, Centanni M, Carnachan SM, Tannock GW, and Sims IM
- Subjects
- Bacteroides metabolism, Feijoa metabolism, Fruit chemistry, Fruit metabolism, Humans, Plant Extracts metabolism, Symbiosis, Bacteroides growth & development, Feijoa chemistry, Gastrointestinal Microbiome drug effects, Plant Extracts chemistry
- Abstract
Polysaccharides from feijoa fruit were extracted and analyzed; the composition of these polysaccharides conforms to those typically found in the primary cell walls of eudicotyledons. The two major polysaccharide extracts consisted of mainly pectic polysaccharides and hemicellulosic polysaccharides [xyloglucan (77%) and arabinoxylan (16%)]. A collection of commensal Bacteroides species was screened for growth in culture using these polysaccharide preparations and placed into five categories based on their preference for each substrate. Most of the species tested could utilize the pectic polysaccharides, but growth on the hemicellulose was more limited. Constituent sugar and glycosyl linkage analysis showed that species that grew on the hemicellulose fraction showed differences in their preference for the two polysaccharides in this preparation. Our data demonstrate that the members of the genus Bacteroides show differential hydrolysis of pectic polysaccharides, xyloglucan, and arabinoxylan, which might influence the structure and metabolic activities of the microbiota in the human gut.
- Published
- 2018
- Full Text
- View/download PDF
12. Methylation analysis of polysaccharides: Technical advice.
- Author
-
Sims IM, Carnachan SM, Bell TJ, and Hinkley SFR
- Abstract
Glycosyl linkage (methylation) analysis is used widely for the structural determination of oligo- and poly-saccharides. The procedure involves derivatisation of the individual component sugars of a polysaccharide to partially methylated alditol acetates which are analysed and quantified by gas chromatography-mass spectrometry. The linkage positions for each component sugar can be determined by correctly identifying the partially methylated alditol acetates. Although the methods are well established, there are many technical aspects to this procedure and both careful attention to detail and considerable experience are required to achieve a successful methylation analysis and to correctly interpret the data generated. The aim of this article is to provide the technical details and critical procedural steps necessary for a successful methylation analysis and to assist researchers (a) with interpreting data correctly and (b) in providing the comprehensive data required for reviewers to fully assess the work., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
13. Structural and rheological studies of a polysaccharide mucilage from lacebark leaves (Hoheria populnea A. Cunn.).
- Author
-
Sims IM, Smith AM, Morris GA, Ghori MU, and Carnachan SM
- Subjects
- Adhesives chemistry, Carbohydrate Sequence, Cell Wall chemistry, Gas Chromatography-Mass Spectrometry, Glucuronic Acid chemistry, Hexuronic Acids chemistry, Magnetic Resonance Spectroscopy, Monosaccharides chemistry, Oligosaccharides chemistry, Polysaccharides isolation & purification, Rheology, Malvaceae chemistry, Molecular Structure, Plant Leaves chemistry, Polysaccharides chemistry
- Abstract
A water-soluble mucilage extracted from the leaves of Hoheria populnea was chemically and physically studied. Monosaccharide composition and linkages were determined by high performance anion exchange chromatography (HPAEC), gas chromatography-mass spectrometry (GC-MS) and nuclear magnetic resonance (NMR) spectroscopy. Lacebark mucilage was composed of rhamnose, galactose, galacturonic acid and glucuronic acid (2:1:2:1). Proton and
13 C NMR spectroscopy, and linkage analysis, revealed a predominantly rhamnogalacturonan I-type (RG I-type) structure comprising of a backbone of →4]-α-D-GalpA-[1→2]-α-L-Rhap-[1→. Data indicated the mucilage likely comprises of a polymer containing several structurally discrete domains or possibly more than one discrete polymer. One domain contains a RG I-type backbone with branching at O-3 of GalpA residues to terminal β-D-GlcpA residues, another similarly contains a RG I-type backbone but is branched at O-4 of the Rhap residues to terminal GalpA residues or oligosaccharides containing α-linked 4-Galp and terminal GalpA residues. A possible third domain contains contiguous 2-Rhap residues, some branched at O-3. Hydrated mucilage exhibited pseudoplastic flow behaviour and viscoelastic properties of an entangled biopolymer network. These rheological behaviours were only slightly affected by pH and may prove advantageous in potential end-product applications including oral pharmaceuticals or as a food ingredient., (Copyright © 2018 Elsevier B.V. All rights reserved.)- Published
- 2018
- Full Text
- View/download PDF
14. Retention of the Structure and Function of Heparan Sulfate Biomaterials After Gamma Irradiation.
- Author
-
Smith RAA, Chua RJE, Carnachan SM, Tan CLL, Sims IM, Hinkley SFR, Nurcombe V, and Cool SM
- Subjects
- Alkaline Phosphatase metabolism, Animals, Bone Morphogenetic Protein 2 pharmacology, Calcium metabolism, Cell Differentiation drug effects, Cell Line, Chromatography, Gel, Electrophoresis, Polyacrylamide Gel, Mice, Myoblasts drug effects, Myoblasts metabolism, Nuclear Magnetic Resonance, Biomolecular, Osteogenesis drug effects, Biocompatible Materials chemistry, Biocompatible Materials radiation effects, Bone Morphogenetic Protein 2 chemistry, Gamma Rays, Heparitin Sulfate chemistry
- Abstract
Heparan sulfate (HS) is a highly heterogeneous polysaccharide implicated in many important biological processes. Our previous work has demonstrated that a particular affinity-selected HS (referred to henceforth as "HS3") is capable of enhancing the osteogenic effects of bone morphogenetic protein 2 (BMP2). Here, we gamma-irradiated HS with 26 kGy of ionizing radiation to determine how this affected the structure, composition, and function. Initial structural studies were performed on a commercial preparation of HS as a proof-of-concept. Gamma irradiation of this HS preparation did not significantly alter its structure or composition compared to nonirradiated material, as demonstrated by proton nuclear magnetic resonance spectroscopy, molecular weight analysis using size exclusion chromatography, and disaccharide compositional analysis. When HS3 was gamma irradiated, no significant effect on binding affinity toward BMP2 was observed, based on competitive surface plasmon resonance and differential scanning fluorimetry assays. Furthermore, irradiation did not significantly affect HS3's ability to synergistically enhance the osteogenic effects of BMP2 in vitro; as measured by the relative abundance of osteogenic transcripts in transdifferentiating C2C12 murine myoblasts. Additionally, no significant differences were observed in the levels of alkaline phosphatase (ALP) or calcium deposition in C2C12s treated with BMP2, together with the irradiated, or nonirradiated HS3. Irradiation of HS3 incorporated into collagen type I sponges did not affect its ability to enhance BMP2-mediated ALP expression in C2C12 cells. Our data confirm that gamma irradiation is a cost-effective and viable solution for the sterilization of HS species that allows the retention of its structure and biological function. The work suggests an effective way to incorporate clinically compatible HS species into orthotic implants, scaffolds, and other medical devices for use in the treatment of a range of diseases and disorders.
- Published
- 2018
- Full Text
- View/download PDF
15. Heparan Sulfate Identification and Characterisation: Method II. Enzymatic Depolymerisation and SAX-HPLC Analysis to Determine Disaccharide Composition.
- Author
-
Carnachan SM and Hinkley SFR
- Abstract
Heparan sulfate (HS) is purified from complex matrices and often not fully characterised to validate its assignment. The characterisation of heparins and heparan sulfates through enzymatic depolymerisation and subsequent strong anion-exchange high performance liquid chromatography (SAX-HPLC) analysis and quantitation of the resulting disaccharides is a critical tool for assessing the structural composition of this class of compound. This protocol details a methodology to reproducibly determine the disaccharide composition of heparan sulfate by enzymatic depolymerisation and SAX-HPLC analysis. A complementary method for identification and characterisation of heparan sulfate can be found at Carnachan and Hinkley (2017)., (Copyright © 2017 The Authors; exclusive licensee Bio-protocol LLC.)
- Published
- 2017
- Full Text
- View/download PDF
16. Heparan Sulfate Identification and Characterisation: Method I.Heparan Sulfate Identification by NMR Analysis.
- Author
-
Carnachan SM and Hinkley SFR
- Abstract
Heparin and heparan sulfate (HS) may be purified from complex biological matrices and are often isolated in sub-milligram quantities but not unequivocally identified by spectroscopic means. This protocol details a methodology to rapidly assess the gross compositional features and approximate purity of HS by
1 H nuclear magnetic resonance. A complimentary method for identification and characterisation of heparan sulfate can be found at Carnachan and Hinkley (2017)., (Copyright © 2017 The Authors; exclusive licensee Bio-protocol LLC.)- Published
- 2017
- Full Text
- View/download PDF
17. Affinity Selection of FGF2-Binding Heparan Sulfates for Ex Vivo Expansion of Human Mesenchymal Stem Cells.
- Author
-
Wijesinghe SJ, Ling L, Murali S, Qing YH, Hinkley SF, Carnachan SM, Bell TJ, Swaminathan K, Hui JH, van Wijnen AJ, Nurcombe V, and Cool SM
- Subjects
- Amino Acid Sequence, Anticoagulants pharmacology, Cell Proliferation, Chromatography, Affinity, Disaccharides analysis, Factor Xa metabolism, Fibroblast Growth Factor 2 chemistry, Heparitin Sulfate isolation & purification, Humans, Mesenchymal Stem Cells drug effects, Peptides chemistry, Peptides metabolism, Protein Stability drug effects, Receptor, Fibroblast Growth Factor, Type 1 metabolism, Signal Transduction drug effects, Fibroblast Growth Factor 2 metabolism, Heparitin Sulfate metabolism, Mesenchymal Stem Cells cytology, Mesenchymal Stem Cells metabolism
- Abstract
The future of human mesenchymal stem cells (hMSCs) as a successful cell therapy relies on bioprocessing strategies to improve the scalability of these cells without compromising their therapeutic ability. The culture-expansion of hMSCs can be enhanced by supplementation with growth factors, particularly fibroblast growth factor 2 (FGF2). The biological activity of FGF2 is controlled through interactions with heparan sulfate (HS) that facilitates ligand-receptor complex formation. We previously reported on an FGF2-interacting HS variant (termed HS2) isolated from embryonic tissue by anionic exchange chromatography that increased the proliferation and potency of hMSCs. Here, we detail the isolation of an FGF2 affinity-purified HS variant (HS8) using a scalable platform technology previously employed to generate HS variants with increased affinity for BMP-2 or VEGF
165 . This process used a peptide sequence derived from the heparin-binding domain of FGF2 as a substrate to affinity-isolate HS8 from a commercially available source of porcine mucosal HS. Our data show that HS8 binds to FGF2 with higher affinity than to FGF1, FGF7, BMP2, PDGF-BB, or VEGF165 . Also, HS8 protects FGF2 from thermal destabilization and increases FGF signaling and hMSC proliferation through FGF receptor 1. Long-term supplementation of cultures with HS8 increased both hMSC numbers and their colony-forming efficiency without adversely affecting the expression of hMSC-related cell surface antigens. This strategy further exemplifies the utility of affinity-purifying HS variants against particular ligands important to the stem cell microenvironment and advocates for their addition as adjuvants for the culture-expansion of hMSCs destined for cellular therapy. J. Cell. Physiol. 232: 566-575, 2017. © 2016 Wiley Periodicals, Inc., (© 2016 Wiley Periodicals, Inc.)- Published
- 2017
- Full Text
- View/download PDF
18. Differential growth of bowel commensal Bacteroides species on plant xylans of differing structural complexity.
- Author
-
Centanni M, Hutchison JC, Carnachan SM, Daines AM, Kelly WJ, Tannock GW, and Sims IM
- Subjects
- Dysbiosis, Humans, Intestines microbiology, Polysaccharides, Prebiotics, Symbiosis, Bacteroides growth & development, Flax chemistry, Xylans chemistry
- Abstract
Alterations to the composition of the bowel microbiota (dysbioses) are associated with particular diseases and conditions of humans. There is a need to discover new, indigestible polysaccharides which are selective growth substrates for commensal bowel bacteria. These substrates (prebiotics) could be added to food in intervention studies to correct bowel dysbiosis. A collection of commensal bacteria was screened for growth in culture using a highly-branched xylan produced by New Zealand flax. Two, Bacteroides ovatus ATCC 8483 and Bacteroides xylanisolvens DSM 18836 grew well on this substrate. The utilisation of the xylan was studied chromatographically and by constituent sugar analysis. The two closely related species utilised the xylan in different ways, and differently from their use of wheat arabinoxylan. The growth of Bacteroides species on other plant xylans having differing chemical structures was also investigated. Novel xylans expand the choice of potential prebiotics that could be used to correct bowel dysbioses., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
19. Determining the extent of heparan sulfate depolymerisation following heparin lyase treatment.
- Author
-
Carnachan SM, Bell TJ, Sims IM, Smith RAA, Nurcombe V, Cool SM, and Hinkley SFR
- Subjects
- Animals, Cattle, Sharks, Swine, Heparin Lyase chemistry, Heparitin Sulfate chemistry
- Abstract
The depolymerisation of porcine mucosal heparan sulfate under the action of heparin lyases and analysis by size-exclusion chromatography (SEC) is described. Heparan sulfate treated to enzymic bond scission producing a Δ4,5 double-bond and quantified by SEC with ultraviolet-visible (UV) spectroscopic detection (230nm) indicated that the majority of the biopolymer (>85%) was reduced to disaccharides (degree of polymerisation (DP)=2). However, analysis of the SEC eluant using refractive index (RI), which reflects the mass contribution of the oligosaccharides rather than the molar response of a UV chromophore, indicated that a considerable proportion of the digested HS, up to 43%, was present with DP >2. This was supported by a mass balance analysis. These results contradict the accepted literature where "complete digestion" is routinely reported. Herein we report on the composition and methodology utilised to ascertain the extent of depolymerization and disaccharide composition of this important biopolymer., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
20. Structural characterisation and rheological properties of a polysaccharide from sesame leaves (Sesamum radiatum Schumach. & Thonn.).
- Author
-
Nep EI, Carnachan SM, Ngwuluka NC, Kontogiorgos V, Morris GA, Sims IM, and Smith AM
- Subjects
- Carbohydrate Conformation, Plant Leaves chemistry, Polysaccharides chemistry, Polysaccharides isolation & purification, Sesamum chemistry
- Abstract
A polysaccharide from the leaves of Sesamum radiatum was extracted by maceration in deionized water followed by ethanol precipitation then chemically and physically characterised. Monosaccharide composition and linkages were determined by high performance anion exchange chromatography (HPAEC), gas chromatography-mass spectrometry (GC-MS) and nuclear magnetic resonance (NMR) spectroscopy respectively. Sesamum gum was composed of glucuronic acid, mannose, galactose, and xylose with trace quantities of glucose, rhamnose and arabinose. Proton and (13)C NMR spectroscopy, and linkage analysis revealed a glucuronomannan based structure comprising a backbone of →4)-β-d-GlcpA-(1→2)-α-d-Manp-(1→ with side-chains of galactose and xylose. Hydrated sesamum gum displayed temperature independent viscoelastic properties with no thermal hysteresis. Intrinsic viscosity was determined to be 3.31 and 4.40dLg(-1) in 0.1M NaCl and deionised water respectively, while the critical concentration was determined to be 0.1% w/v. The characterisation performed in this study will help direct potential applications of this material in foods and pharmaceuticals., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
21. Poly Ethoxy Ethyl Glycinamide (PEE-G) Dendrimers: Dendrimers Specifically Designed for Pharmaceutical Applications.
- Author
-
Toms S, Carnachan SM, Hermans IF, Johnson KD, Khan AA, O'Hagan SE, Tang CW, and Rendle PM
- Subjects
- Animals, Cell Survival drug effects, Dendrimers toxicity, Drug Discovery, Female, Male, Mice, Inbred C57BL, Rats, Sprague-Dawley, Sheep, Spleen cytology, Spleen drug effects, Dendrimers chemical synthesis
- Abstract
Poly ethoxy ethyl glycinamide (PEE-G) dendrimers have been specifically designed and synthesized with the aim of providing a readily available dendrimer scaffold that can be used to make products that can meet the stringent requirements of pharmaceutical applications. The synthesis has been refined to produce dendrimers that are of high HPLC purity. The suitability of PEE-G dendrimers for their designed use has been verified by subsequent measurements to demonstrate that they are of high stability, high aqueous solubility, low cytotoxicity, low immunogenicity and with low in vivo toxicity in an escalating-dose rat study. PEE-G dendrimers therefore provide a useful scaffold for researchers wanting to develop dendrimer-based drug candidates., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2016
- Full Text
- View/download PDF
22. Structure of a shear-thickening polysaccharide extracted from the New Zealand black tree fern, Cyathea medullaris.
- Author
-
Wee MS, Matia-Merino L, Carnachan SM, Sims IM, and Goh KK
- Subjects
- Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Plant Extracts isolation & purification, Polysaccharides isolation & purification, Rheology, Ferns chemistry, Plant Extracts chemistry, Polysaccharides chemistry
- Abstract
A shear-thickening water-soluble polysaccharide was purified from mucilage extracted from the fronds of the New Zealand black tree fern (Cyathea medullaris or 'mamaku' in Māori) and its structure characterised. Constituent sugar analysis by three complementary methods, combined with linkage analysis (of carboxyl reduced samples) and 1H and 13C nuclear magnetic resonance spectroscopy (NMR) revealed a glucuronomannan comprising a backbone of 4-linked methylesterified glucopyranosyl uronic acid and 2-linked mannopyranosyl residues, branched at O-3 of 45% and at both O-3 and O-4 of 53% of the mannopyranosyl residues with side chains likely comprising terminal xylopyranosyl, terminal galactopyranosyl, non-methylesterified terminal glucopyranosyl uronic acid and 3-linked glucopyranosyl uronic acid residues. The weight-average molecular weight of the purified polysaccharide was ∼1.9×10(6) Da as determined by size-exclusion chromatography coupled with multi-angle laser light scattering (SEC-MALLS). The distinctive rheological properties of this polysaccharide are discussed in relation to its structure., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
23. Characterizing kiwifruit carbohydrate utilization in vitro and its consequences for human faecal microbiota.
- Author
-
Rosendale DI, Blatchford PA, Sims IM, Parkar SG, Carnachan SM, Hedderley D, and Ansell J
- Subjects
- Bacteria genetics, Bacteria growth & development, Bacteria metabolism, Bacterial Proteins metabolism, Biota, Cellulose metabolism, Culture Media metabolism, Dietary Carbohydrates metabolism, Enzyme Activation, Enzyme Assays, Fermentation, Gastrointestinal Tract metabolism, Gastrointestinal Tract microbiology, Genes, rRNA, Humans, Polysaccharides metabolism, RNA, Ribosomal, 16S metabolism, Solubility, Actinidia metabolism, Carbohydrate Metabolism, Feces microbiology, Fruit metabolism, Metagenome
- Abstract
It is well accepted that our gut bacteria have coevolved with us in relation to our genetics, diet and lifestyle and are integrated metabolically with us to affect our gut health adversely or beneficially. "Who is there" may vary quite widely between individuals, as might "how they do it", but "what they make" may be less variable. Many different individual species of bacteria can perform the same saccharolytic functions and so the availability of substrate (host or diet-derived) along with the degradative enzymes they possess may be key drivers of gut ecology. In this case study, we discuss detailed microbial ecology and metabolism analysis for three individuals following 48 h of in vitro faecal fermentation, using green kiwifruit as the substrate. In parallel, we have analyzed the chemical changes to the kiwifruit carbohydrates present in the fermenta to close the circle on substrate usage/degradative enzymes possessed/microbes present/microbial byproducts produced. In the absence of host carbohydrate, we see that kiwifruit carbohydrates were differentially utilized to drive microbial diversity, yet resulted in similar byproduct production. The starting ecology of each individual influenced the quantitative and qualitative microbial changes; but not necessarily the metabolic byproduct production. Thus, we propose that it is the consistent functional changes that are relevant for assessment of gut health benefits of any food. We recommend that in this era of large scale genotype/-omics studies that hypothesis-driven, bottom-up research is best placed to interpret metagenomic data in parallel with functional, phenotypic data.
- Published
- 2012
- Full Text
- View/download PDF
24. Virucidal activity of polysaccharide extracts from four algal species against herpes simplex virus.
- Author
-
Harden EA, Falshaw R, Carnachan SM, Kern ER, and Prichard MN
- Subjects
- Cells, Cultured, Fibroblasts virology, Humans, Inhibitory Concentration 50, Microbial Sensitivity Tests, Viral Plaque Assay, Virus Attachment drug effects, Antiviral Agents isolation & purification, Antiviral Agents pharmacology, Eukaryota chemistry, Herpesvirus 1, Human drug effects, Herpesvirus 2, Human drug effects, Polysaccharides isolation & purification, Polysaccharides pharmacology
- Abstract
Herpes simplex virus types 1 and 2 (HSV-1, HSV-2) infections are common, but can cause serious infections in neonates and the immunocompromised. Drugs currently used to treat cutaneous or genital HSV infections are effective in limiting disease, but the emergence of drug resistant viruses in immunocompromised individuals can be problematic. While the prophylactic oral treatment with antiviral drugs can reduce virus shedding and transmission, there is a need for topical microbicides that have the potential to limit sexual transmission of the virus. Previous reports demonstrated the antiviral activity of complex sulfated polysaccharides extracted from various species of marine algae and suggested that they interfered with the attachment of virions to host cells. Here, we evaluated the antiviral activity of extracts from Undaria pinnatifida, Splachnidium rugosum, Gigartina atropurpurea, and Plocamium cartilagineum against HSV-1 and HSV-2. These extracts exhibited good activity when added during the first hour of viral infection, but were ineffective if added later. Plaque reduction assays, when the extracts were added prior to viral inoculation, yielded EC(50) values that ranged from 2.5-3.6 microg/ml for HSV-1 and 0.7-6.6 microg/ml for HSV-2. None of the extracts exhibited significant toxicity in a neutral red uptake assay (IC(50) >100 microg/ml). Subsequent assays showed that the compounds had potent virucidal activity and were active at very low concentrations. We conclude that these extracts are nontoxic and effective virucidal agents that warrant further investigation to examine their potential role in the prevention of HSV infections of humans.
- Published
- 2009
- Full Text
- View/download PDF
25. Ferulic acid is bound to the primary cell walls of all gymnosperm families.
- Author
-
Carnachan SM and Harris PJ
- Abstract
Unlignified primary cell walls containing ester-linked ferulic acid fluoresce blue in ultraviolet radiation which changes to green with increased intensity on treatment with ammonium hydroxide. Using this fluorescence behaviour, we detected ester-linked ferulic acid in the primary cell walls of all 41 species of gymnosperms we examined. These species were in 17 families representing all four extant classes of gymnosperms. In addition, we obtained cell-wall preparations containing >95% primary cell walls from nine gymnosperm species in nine families, representing all four extant classes. These preparations were analysed for ester-linked monomeric phenolic acids. We found ferulic acid (mostly trans) (88-1,561µg/g cell walls) in all of the preparations and p-coumaric acid (mostly trans) (0-106µg/g cell walls) in all except one of them. Ferulic acid ester-linked to primary cell walls has previously been found in angiosperms: in the commelinoid monocotyledons and in the dicotyledon order Caryophyllales, both monophyletic groups. From the present results, we postulate that the extant classes of gymnosperms are monophyletic and no class is sister to the angiosperms.
- Published
- 2000
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.