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Abstract Increase in anthropogenic activities proliferated the consumption of resources such as phosphorus; and increase the adverse environmental impacts especially eutrophication on water resources such as lakes. Nutrient recovery from domestic wastewaters to produce a fertiliser has been explored to address these challenges in the context of a sustainable circular nutrient economy. Life cycle assessment (LCA) was performed to holistically assess the impacts of integrating a nutrient recovery system on wastewater and water resource management using Laguna de Bay, Philippines as the geographical boundary. The inventory was developed based on the results of the emerging nutrient recovery reactor operations and the application of the recovered fertiliser on the agricultural crops. The LCA results for the proposed scenario showed environmental benefits of about 83.6% freshwater eutrophication, 102.5% terrestrial ecotoxicity, 26.9% water consumption, 100.7% mineral resource scarcity, while the global warming potential is 95.4% higher than the baseline scenario. Results imply policy review for septage management, system optimisation, and evaluation of alternative methods of wastewater management, in terms of life cycle thinking and sustainability across the globe.