Search

We present JWST/NIRSpec Integral Field Spectroscopy in the rest-frame optical bands of the system PJ308-21, a quasar at $z=6.2342$ caught as its host galaxy interacts with companion galaxies. We detect spatially extended emission of several emission lines (H$\alpha$, H$\beta$, [OIII], [NII], [SII], HeII), which we use to study the properties of the ionized phase of the interstellar medium: the source and hardness of the photoionizing radiation field, metallicity, dust reddening, electron density and temperature, and star formation. We also marginally detect continuum starlight emission associated with the companion sources. We find that at least two independent satellite galaxies are part of the system. While the quasar host appears highly enriched and obscured, with AGN-like photoionization conditions, the western companion shows minimal dust extinction, low metallicity ($Z\sim0.4$ Z$_\odot$), and star-formation driven photoionization. The eastern companion shows higher extinction and metallicity ($Z\sim0.8$ Z$_\odot$) compared to the western companion, and it is at least partially photoionized by the nearby quasar. We do not find any indication of AGN in the companion sources. Our study shows that while the quasar host galaxy is already very massive ($M_{\rm dyn}>10^{11}$ M$_\odot$), it is still rapidly building up by accreting two relatively massive ($M_{\rm star}\sim 10^{10}$ M$_\odot$) companion sources. This dataset showcases the power of JWST in exposing the build-up of massive galaxies in the first Gyr of the Universe., Comment: 15 pages, 16 figures. Accepted for publication in A&A

We present JWST/NIRSpec integral field data of the quasar PJ308-21 at $z=6.2342$. As shown by previous ALMA and HST imaging, the quasar has two companion sources, interacting with the quasar host galaxy. The high-resolution G395H/290LP NIRSpec spectrum covers the $2.87-5.27\ \rm \mu m$ wavelength range and shows the rest-frame optical emission of the quasar with exquisite quality ($S/N\sim 100-400$ per spectral element). Based on the H$\beta$ line from the broad line region, we obtain an estimate of the black hole mass $M_{\rm BH,H\beta}\sim 2.7\times 10^{9}\ \rm M_{\odot}$. This value is within a factor $\lesssim 1.5$ of the H$\alpha$-based black hole mass from the same spectrum ($M_{\rm BH, H\alpha}\sim 1.93\times 10^{9}\ \rm M_{\odot}$) and is consistent with a previous estimate relying on the MgII $\lambda 2799$ ($M_{\rm BH, MgII}\sim 2.65\times 10^{9}\ \rm M_{\odot}$). All these $M_{\rm BH}$ are within the $\sim 0.5$ dex intrinsic scatter of the adopted mass calibrations. The high Eddington ratio of PJ308-21 $\lambda_{\rm Edd,H\beta}\sim 0.67$ ($\lambda_{\rm Edd,H\alpha}\sim 0.96$) is in line with the overall quasar population at $z \gtrsim 6$. The relative strengths of the [OIII], FeII and H$\beta$ lines are consistent with the empirical "Eigenvector 1" correlations as observed for low redshift quasars. We find evidence for blueshifted [OIII] $\lambda 5007$ emission with a velocity offset $\Delta v_{\rm [OIII]}=-1922\pm 39$ km s$^{-1}$ from the systemic velocity and a $\rm FWHM([OIII])=2776^{+75}_{-74}$ km s$^{-1}$. This may be the signature of an outflow from the nuclear region, despite the true values of $\Delta v_{\rm [OIII]}$ and $\rm FWHM([OIII])$ are likely more uncertain due to the blending with H$\beta$ and FeII lines. Our study demonstrates the unique capabilities of NIRSpec in capturing quasar spectra at cosmic dawn and studying their properties in unprecedented detail., Comment: 17 pages, 9 figures, accepted for publication in A&A

Radio interferometers targeting the 21cm brightness temperature fluctuations at high redshift are subject to systematic effects that operate over a range of different timescales. These can be isolated by designing appropriate Fourier filters that operate in fringe-rate (FR) space, the Fourier pair of local sidereal time (LST). Applications of FR filtering include separating effects that are correlated with the rotating sky vs. those relative to the ground, down-weighting emission in the primary beam sidelobes, and suppressing noise. FR filtering causes the noise contributions to the visibility data to become correlated in time however, making interpretation of subsequent averaging and error estimation steps more subtle. In this paper, we describe fringe rate filters that are implemented using discrete prolate spheroidal sequences, and designed for two different purposes -- beam sidelobe/horizon suppression (the `mainlobe' filter), and ground-locked systematics removal (the `notch' filter). We apply these to simulated data, and study how their properties affect visibilities and power spectra generated from the simulations. Included is an introduction to fringe-rate filtering and a demonstration of fringe-rate filters applied to simple situations to aid understanding., Comment: 21 pages, 18 figures, submitted to Monthly Notices of the Royal Astronomical Society

This paper presents the design and deployment of the Hydrogen Epoch of Reionization Array (HERA) phase II system. HERA is designed as a staged experiment targeting 21 cm emission measurements of the Epoch of Reionization. First results from the phase I array are published as of early 2022, and deployment of the phase II system is nearing completion. We describe the design of the phase II system and discuss progress on commissioning and future upgrades. As HERA is a designated Square Kilometer Array (SKA) pathfinder instrument, we also show a number of "case studies" that investigate systematics seen while commissioning the phase II system, which may be of use in the design and operation of future arrays. Common pathologies are likely to manifest in similar ways across instruments, and many of these sources of contamination can be mitigated once the source is identified.

Detection of the faint 21 cm line emission from the Cosmic Dawn and Epoch of Reionisation will require not only exquisite control over instrumental calibration and systematics to achieve the necessary dynamic range of observations but also validation of analysis techniques to demonstrate their statistical properties and signal loss characteristics. A key ingredient in achieving this is the ability to perform high-fidelity simulations of the kinds of data that are produced by the large, many-element, radio interferometric arrays that have been purpose-built for these studies. The large scale of these arrays presents a computational challenge, as one must simulate a detailed sky and instrumental model across many hundreds of frequency channels, thousands of time samples, and tens of thousands of baselines for arrays with hundreds of antennas. In this paper, we present a fast matrix-based method for simulating radio interferometric measurements (visibilities) at the necessary scale. We achieve this through judicious use of primary beam interpolation, fast approximations for coordinate transforms, and a vectorised outer product to expand per-antenna quantities to per-baseline visibilities, coupled with standard parallelisation techniques. We validate the results of this method, implemented in the publicly-available matvis code, against a high-precision reference simulator, and explore its computational scaling on a variety of problems., Comment: 25 pages, 20 figures, submitted to RAS Techniques and Instruments, matvis is publicly available at https://github.com/HERA-Team/matvis

Observations with radio arrays that target the 21-cm signal originating from the early Universe suffer from a variety of systematic effects. An important class of these are reflections and spurious couplings between antennas. We apply a Hamiltonian Monte Carlo sampler to the modelling and mitigation of these systematics in simulated Hydrogen Epoch of Reionisation Array (HERA) data. This method allows us to form statistical uncertainty estimates for both our models and the recovered visibilities, which is an important ingredient in establishing robust upper limits on the Epoch of Reionisation (EoR) power spectrum. In cases where the noise is large compared to the EoR signal, this approach can constrain the systematics well enough to mitigate them down to the noise level for both systematics studied. Where the noise is smaller than the EoR, our modelling can mitigate the majority of the reflections with there being only a minor level of residual systematics, while cross-coupling sees essentially complete mitigation. Our approach performs similarly to existing filtering/fitting techniques used in the HERA pipeline, but with the added benefit of rigorously propagating uncertainties. In all cases it does not significantly attenuate the underlying signal., Comment: 19 pages, 14 figures, submitted to MNRAS

The key to detecting neutral hydrogen during the epoch of reionization (EoR) is to separate the cosmological signal from the dominating foreground radiation. We developed direct optimal mapping (DOM) to map interferometric visibilities; it contains only linear operations, with full knowledge of point spread functions from visibilities to images. Here, we demonstrate a fast Fourier transform-based image power spectrum and its window functions computed from the DOM images. We use noiseless simulation, based on the Hydrogen Epoch of Reionization Array Phase I configuration, to study the image power spectrum properties. The window functions show $<10^{-11}$ of the integrated power leaks from the foreground-dominated region into the EoR window; the 2D and 1D power spectra also verify the separation between the foregrounds and the EoR., Comment: Published in ApJ

Radio interferometers aiming to measure the power spectrum of the redshifted 21 cm line during the Epoch of Reionisation (EoR) need to achieve an unprecedented dynamic range to separate the weak signal from overwhelming foreground emissions. Calibration inaccuracies can compromise the sensitivity of these measurements to the effect that a detection of the EoR is precluded. An alternative to standard analysis techniques makes use of the closure phase, which allows one to bypass antenna-based direction-independent calibration. Similarly to standard approaches, we use a delay spectrum technique to search for the EoR signal. Using 94 nights of data observed with Phase I of the Hydrogen Epoch of Reionization Array (HERA), we place approximate constraints on the 21 cm power spectrum at $z=7.7$. We find at 95% confidence that the 21 cm EoR brightness temperature is $\le$(372)$^2$ "pseudo" mK$^2$ at 1.14 "pseudo" $h$ Mpc$^{-1}$, where the "pseudo" emphasises that these limits are to be interpreted as approximations to the actual distance scales and brightness temperatures. Using a fiducial EoR model, we demonstrate the feasibility of detecting the EoR with the full array. Compared to standard methods, the closure phase processing is relatively simple, thereby providing an important independent check on results derived using visibility intensities, or related., Comment: 16 pages, 14 figures, accepted for publication by MNRAS

We present ALMA Band~7 observations of a remarkably bright galaxy candidate at $z_{\rm phot}$=$16.7^{+1.9}_{-0.3}$ ($M_{\rm UV}$=$-21.6$), S5-z17-1, identified in JWST Early Release Observation data of Stephen's Quintet. We do not detect the dust continuum at 866~$\mu$m, ruling out the possibility that \targb\ is a low-$z$ dusty starburst with a star-formation rate of $\gtrsim 30$~$M_{\odot}$~yr$^{-1}$. We detect a 5.1$\sigma$ line feature at $338.726\pm0.007$~GHz exactly coinciding with the JWST source position, with a 2\% likelihood of the signal being spurious. The most likely line identification would be [OIII]52$\mu$m at $z=16.01$ or [CII]158$\mu$m at $z=4.61$, whose line luminosities do not violate the non-detection of the dust continuum in both cases. Together with three other $z\gtrsim$ 11--13 candidate galaxies recently observed with ALMA, we conduct a joint ALMA and JWST spectral energy distribution (SED) analysis and find that the high-$z$ solution at $z\sim$11--17 is favored in every candidate as a very blue (UV continuum slope of $\simeq-2.3$) and luminous ($M_{\rm UV}\simeq[-$24:$-21]$) system. Still, we find in several candidates that reasonable SED fits ($\Delta$ $\chi^{2}\lesssim4$) are reproduced by type-II quasar and/or quiescent galaxy templates with strong emission lines at $z\sim3$--5, where such populations predicted from their luminosity functions and EW([OIII]+H$\beta$) distributions are abundant in survey volumes used for the identification of the $z\sim$11--17 candidates. While these recent ALMA observation results have strengthened the likelihood of the high-$z$ solutions, lower-$z$ possibilities are not completely ruled out in several of the $z\sim$11--17 candidates, indicating the need to consider the relative surface densities of the lower-$z$ contaminants in the ultra high-$z$ galaxy search., Comment: 25 pages, 8 figures, 7 tables. ApJ in press

Radio Frequency Interference (RFI) is one of the systematic challenges preventing 21cm interferometric instruments from detecting the Epoch of Reionization. To mitigate the effects of RFI on data analysis pipelines, numerous inpaint techniques have been developed to restore RFI corrupted data. We examine the qualitative and quantitative errors introduced into the visibilities and power spectrum due to inpainting. We perform our analysis on simulated data as well as real data from the Hydrogen Epoch of Reionization Array (HERA) Phase 1 upper limits. We also introduce a convolutional neural network that capable of inpainting RFI corrupted data in interferometric instruments. We train our network on simulated data and show that our network is capable at inpainting real data without requiring to be retrained. We find that techniques that incorporate high wavenumbers in delay space in their modeling are best suited for inpainting over narrowband RFI. We also show that with our fiducial parameters Discrete Prolate Spheroidal Sequences (DPSS) and CLEAN provide the best performance for intermittent ``narrowband'' RFI while Gaussian Progress Regression (GPR) and Least Squares Spectral Analysis (LSSA) provide the best performance for larger RFI gaps. However we caution that these qualitative conclusions are sensitive to the chosen hyperparameters of each inpainting technique. We find these results to be consistent in both simulated and real visibilities. We show that all inpainting techniques reliably reproduce foreground dominated modes in the power spectrum. Since the inpainting techniques should not be capable of reproducing noise realizations, we find that the largest errors occur in the noise dominated delay modes. We show that in the future, as the noise level of the data comes down, CLEAN and DPSS are most capable of reproducing the fine frequency structure in the visibilities of HERA data., Comment: 21 pages, 13 figures

We present ALMA sub-kpc- to kpc-scale resolution observations of the [CII], CO(9-8), and OH$^{+}$\,($1_{1}$--$0_{1}$) lines along with their dust continuum emission toward the FIR luminous quasar SDSS J231038.88+185519.7 at $z = 6.0031$. The [CII] brightness follows a flat distribution with a Sersic index of 0.59. The CO(9-8) line and the dust continuum can be fit with an unresolved nuclear component and an extended Sersic component with a Sersic index of ~1. The dust temperature drops with distance from the center. The effective radius of the dust continuum is smaller than that of the line emission and the dust mass surface density, but is consistent with that of the star formation rate surface density. The OH$^{+}$\,($1_{1}$--$0_{1}$) line shows a P-Cygni profile with an absorption, which may indicate an outflow with a neutral gas mass of $(6.2\pm1.2)\times10^{8} M_{\odot}$ along the line of sight. We employed a 3D tilted ring model to fit the [CII] and CO(9-8) data cubes. The two lines are both rotation dominated and trace identical disk geometries and gas motions. We decompose the circular rotation curve measured from the kinematic model fit to the [CII] line into four matter components (black hole, stars, gas, and dark matter). The quasar-starburst system is dominated by baryonic matter inside the central few kiloparsecs. We constrain the black hole mass to be $2.97^{+0.51}_{-0.77}\times 10^{9}\,M_{\odot}$; this is the first time that the dynamical mass of a black hole has been measured at $z\sim6$. A massive stellar component (on the order of $10^{9}\,M_{\odot}$) may have already existed when the Universe was only ~0.93 Gyr old. The relations between the black hole mass and the baryonic mass of this quasar indicate that the central supermassive black hole may have formed before its host galaxy. [Abridged version. Please see the full abstract in the manuscript.], Comment: Accepted for publication in A&A

We report the most sensitive upper limits to date on the 21 cm epoch of reionization power spectrum using 94 nights of observing with Phase I of the Hydrogen Epoch of Reionization Array (HERA). Using similar analysis techniques as in previously reported limits (HERA Collaboration 2022a), we find at 95% confidence that $\Delta^2(k = 0.34$ $h$ Mpc$^{-1}$) $\leq 457$ mK$^2$ at $z = 7.9$ and that $\Delta^2 (k = 0.36$ $h$ Mpc$^{-1}) \leq 3,496$ mK$^2$ at $z = 10.4$, an improvement by a factor of 2.1 and 2.6 respectively. These limits are mostly consistent with thermal noise over a wide range of $k$ after our data quality cuts, despite performing a relatively conservative analysis designed to minimize signal loss. Our results are validated with both statistical tests on the data and end-to-end pipeline simulations. We also report updated constraints on the astrophysics of reionization and the cosmic dawn. Using multiple independent modeling and inference techniques previously employed by HERA Collaboration (2022b), we find that the intergalactic medium must have been heated above the adiabatic cooling limit at least as early as $z = 10.4$, ruling out a broad set of so-called "cold reionization" scenarios. If this heating is due to high-mass X-ray binaries during the cosmic dawn, as is generally believed, our result's 99% credible interval excludes the local relationship between soft X-ray luminosity and star formation and thus requires heating driven by evolved low-metallicity stars., Comment: 57 pages, 37 figures. Updated to match the accepted ApJ version. Corresponding author: Joshua S. Dillon

Combining the visibilities measured by an interferometer to form a cosmological power spectrum is a complicated process. In a delay-based analysis, the mapping between instrumental and cosmological space is not a one-to-one relation. Instead, neighbouring modes contribute to the power measured at one point, with their respective contributions encoded in the window functions. To better understand the power measured by an interferometer, we assess the impact of instrument characteristics and analysis choices on these window functions. Focusing on the Hydrogen Epoch of Reionization Array (HERA) as a case study, we find that long-baseline observations correspond to enhanced low-k tails of the window functions, which facilitate foreground leakage, whilst an informed choice of bandwidth and frequency taper can reduce said tails. With simple test cases and realistic simulations, we show that, apart from tracing mode mixing, the window functions help accurately reconstruct the power spectrum estimator of simulated visibilities. The window functions depend strongly on the beam chromaticity, and less on its spatial structure - a Gaussian approximation, ignoring side lobes, is sufficient. Finally, we investigate the potential of asymmetric window functions, down-weighting the contribution of low-k power to avoid foreground leakage. The window functions presented here correspond to the latest HERA upper limits for the full Phase I data. They allow an accurate reconstruction of the power spectrum measured by the instrument and will be used in future analyses to confront theoretical models and data directly in cylindrical space., Comment: 18 pages, 19 figures, accepted for publication in MNRAS

Motivated by the desire for wide-field images with well-defined statistical properties for 21cm cosmology, we implement an optimal mapping pipeline that computes a maximum likelihood estimator for the sky using the interferometric measurement equation. We demonstrate this direct optimal mapping with data from the Hydrogen Epoch of Reionization (HERA) Phase I observations. After validating the pipeline with simulated data, we develop a maximum likelihood figure-of-merit for comparing four sky models at 166MHz with a bandwidth of 100kHz. The HERA data agree with the GLEAM catalogs to <10%. After subtracting the GLEAM point sources, the HERA data discriminate between the different continuum sky models, providing most support for the model of Byrne et al. 2021. We report the computation cost for mapping the HERA Phase I data and project the computation for the HERA 320-antenna data; both are feasible with a modern server. The algorithm is broadly applicable to other interferometers and is valid for wide-field and non-coplanar arrays., Comment: 16 pages, 10 figures, 2 tables, published on ApJ

We investigate the molecular gas content of z~6 quasar host galaxies using the IRAM / Northern Extended Millimeter Array. We target the 3mm dust continuum, and the line emission from CO(6-5), CO(7-6), [CI]2-1 in 10 infra-red-luminous quasars that have been previously studied in their 1mm dust continuum and [CII] line emission. We detect CO(7-6) at various degrees of significance in all the targeted sources, thus doubling the number of such detections in z~6 quasars. The 3mm to 1mm flux density ratios are consistent with a modified black body spectrum with a dust temperature $T_{dust}$~47 K and an optical depth $\tau_{\nu}$=0.2 at the [CII] frequency. Our study provides us with four independent ways to estimate the molecular gas mass, $M_{H2}$, in the targeted quasars. This allows us to set constraints on various parameters used in the derivation of molecular gas mass estimates, such as the mass per luminosity ratios $\alpha_{CO}$ and $\alpha_{[CII]}$, the gas-to-dust ratio $\delta_{g/d}$, and the carbon abundance [C]/H2. Leveraging either on the dust, CO, [CI], or [CII] emission yields mass estimates of the entire sample in the range $M_{H2}$~$10^{10}$ to $10^{11}$ M$_{\odot}$. We compare the observed luminosities of dust, [CII], [CI], and CO(7-6) with predictions from photo-dissociation and X-ray dominated regions. We find that the former provide better model fits to our data, assuming that the bulk of the emission arises from dense ($n_H>10^4$ cm$^{-3}$) clouds with a column density $N_{H}$~$10^{23}$ cm$^{-2}$, exposed to a radiation field with intensity $G_0$~$10^3$ (in Habing units). Our analysis reiterates the presence of massive reservoirs of molecular gas fueling star formation and nuclear accretion in $z$~6 quasar host galaxies. It also highlights the power of combined 3mm and 1mm observations for quantitative studies of the dense gas content in massive galaxies at cosmic dawn., Comment: 13 pages, 7 figures. Accepted for publication in A&A

We report deep Karl G. Jansky Very Large Array (VLA) observations of the optically ultraluminous and radio-quiet quasar SDSS J010013.02 + 280225.8 (hereafter J0100+2802) at redshift $z=$6.3. We detected the radio continuum emission at 1.5 GHz, 6 GHz, and 10 GHz. This leads to a radio power-law spectral index of $\alpha = -0.52\pm0.18$ ($S \propto \nu^{\alpha}$). The radio source is unresolved in all VLA bands with an upper limit to the size of $0.2^{\prime \prime}$ (i.e., $\sim$ 1.1 kpc) at 10 GHz. We find variability in the flux density (increase by $\sim 33\%$) and the spectral index (steepened) between observations in 2016 and 2017. We also find that the VLA 1.5 GHz flux density observed in the same year is 1.5 times that detected with the Very Long Baseline Array (VLBA) in 2016 at the same frequency. This difference suggests that half of the radio emission from J0100+2802 comes from a compact core within 40 pc, and the rest comes from the surrounding few kpc area which is diffuse and resolved out in the VLBA observations. The diffuse emission is four times brighter than that would be expected if driven by star formation. We conclude that the central active galactic nucleus is the dominant power engine of the radio emission in J0100+2802., Comment: 9 pages, 3 figures. Accepted for publication in The Astrophysical Journal

We present Karl G. Jansky Very Large Array (VLA) S- (2--4 GHz), C- (4--8 GHz), and X-band (8--12 GHz) continuum observations toward seven radio-loud quasars at $z>5$. This sample has previously been found to exhibit spectral peaks at observed-frame frequencies above $\sim$1 GHz. We also present upgraded Giant Metrewave Radio Telescope (uGMRT) band-2 (200 MHz), band-3 (400 MHz), and band-4 (650 MHz) radio continuum observations toward eight radio-loud quasars at $z>5$, selected from our previous GMRT survey, in order to sample their low-frequency synchrotron emission. Combined with archival radio continuum observations, all ten targets show evidence for spectral turnover. The turnover frequencies are $\sim$1--50 GHz in the rest frame, making these targets gigahertz-peaked-spectrum (GPS) or high-frequency-peaker (HFP) candidates. For the nine well-constrained targets with observations on both sides of the spectral turnover, we fit the entire radio spectrum with absorption models associated with synchrotron self-absorption and free-free absorption (FFA). Our results show that FFA in an external inhomogeneous medium can accurately describe the observed spectra for all nine targets, which may indicate an FFA origin for the radio spectral turnover in our sample. As for the complex spectrum of J114657.79+403708.6 at $z=5.00$ with two spectral peaks, it may be caused by multiple components (i.e., core-jet) and FFA by the high-density medium in the nuclear region. However, we cannot rule out the spectral turnover origin of variability. Based on our radio spectral modeling, we calculate the radio loudness $R_{2500\rm\, \AA}$ for our sample, which ranges from 12$^{+1}_{-1}$ to 674$^{+61}_{-51}$., Comment: Accepted for publication in A&A

We present a framework for identifying and flagging malfunctioning antennas in large radio interferometers. We outline two distinct categories of metrics designed to detect outliers along known failure modes of large arrays: cross-correlation metrics, based on all antenna pairs, and auto-correlation metrics, based solely on individual antennas. We define and motivate the statistical framework for all metrics used, and present tailored visualizations that aid us in clearly identifying new and existing systematics. We implement these techniques using data from 105 antennas in the Hydrogen Epoch of Reionization Array (HERA) as a case study. Finally, we provide a detailed algorithm for implementing these metrics as flagging tools on real data sets., Comment: 31 pages, 17 figures

We report upper-limits on the Epoch of Reionization (EoR) 21 cm power spectrum at redshifts 7.9 and 10.4 with 18 nights of data ($\sim36$ hours of integration) from Phase I of the Hydrogen Epoch of Reionization Array (HERA). The Phase I data show evidence for systematics that can be largely suppressed with systematic models down to a dynamic range of $\sim10^9$ with respect to the peak foreground power. This yields a 95% confidence upper limit on the 21 cm power spectrum of $\Delta^2_{21} \le (30.76)^2\ {\rm mK}^2$ at $k=0.192\ h\ {\rm Mpc}^{-1}$ at $z=7.9$, and also $\Delta^2_{21} \le (95.74)^2\ {\rm mK}^2$ at $k=0.256\ h\ {\rm Mpc}^{-1}$ at $z=10.4$. At $z=7.9$, these limits are the most sensitive to-date by over an order of magnitude. While we find evidence for residual systematics at low line-of-sight Fourier $k_\parallel$ modes, at high $k_\parallel$ modes we find our data to be largely consistent with thermal noise, an indicator that the system could benefit from deeper integrations. The observed systematics could be due to radio frequency interference, cable sub-reflections, or residual instrumental cross-coupling, and warrant further study. This analysis emphasizes algorithms that have minimal inherent signal loss, although we do perform a careful accounting in a companion paper of the small forms of loss or bias associated with the pipeline. Overall, these results are a promising first step in the development of a tuned, instrument-specific analysis pipeline for HERA, particularly as Phase II construction is completed en route to reaching the full sensitivity of the experiment., Comment: Accepted to ApJ. https://reionization.org/science/public-data-release-1/

Precision calibration poses challenges to experiments probing the redshifted 21-cm signal of neutral hydrogen from the Cosmic Dawn and Epoch of Reionization (z~30-6). In both interferometric and global signal experiments, systematic calibration is the leading source of error. Though many aspects of calibration have been studied, the overlap between the two types of instruments has received less attention. We investigate the sky based calibration of total power measurements with a HERA dish and an EDGES style antenna to understand the role of auto-correlations in the calibration of an interferometer and the role of sky in calibrating a total power instrument. Using simulations we study various scenarios such as time variable gain, incomplete sky calibration model, and primary beam model. We find that temporal gain drifts, sky model incompleteness, and beam inaccuracies cause biases in the receiver gain amplitude and the receiver temperature estimates. In some cases, these biases mix spectral structure between beam and sky resulting in spectrally variable gain errors. Applying the calibration method to the HERA and EDGES data, we find good agreement with calibration via the more standard methods. Although instrumental gains are consistent with beam and sky errors similar in scale to those simulated, the receiver temperatures show significant deviations from expected values. While we show that it is possible to partially mitigate biases due to model inaccuracies by incorporating a time-dependent gain model in calibration, the resulting errors on calibration products are larger and more correlated. Completely addressing these biases will require more accurate sky and primary beam models., Comment: 16 pages, 13 figures, 1 table; accepted for publication in MNRAS main journal

We describe the validation of the HERA Phase I software pipeline by a series of modular tests, building up to an end-to-end simulation. The philosophy of this approach is to validate the software and algorithms used in the Phase I upper limit analysis on wholly synthetic data satisfying the assumptions of that analysis, not addressing whether the actual data meet these assumptions. We discuss the organization of this validation approach, the specific modular tests performed, and the construction of the end-to-end simulations. We explicitly discuss the limitations in scope of the current simulation effort. With mock visibility data generated from a known analytic power spectrum and a wide range of realistic instrumental effects and foregrounds, we demonstrate that the current pipeline produces power spectrum estimates that are consistent with known analytic inputs to within thermal noise levels (at the 2 sigma level) for k > 0.2 h/Mpc for both bands and fields considered. Our input spectrum is intentionally amplified to enable a strong `detection' at k ~0.2 h/Mpc -- at the level of ~25 sigma -- with foregrounds dominating on larger scales, and thermal noise dominating at smaller scales. Our pipeline is able to detect this amplified input signal after suppressing foregrounds with a dynamic range (foreground to noise ratio) of > 10^7. Our validation test suite uncovered several sources of scale-independent signal loss throughout the pipeline, whose amplitude is well-characterized and accounted for in the final estimates. We conclude with a discussion of the steps required for the next round of data analysis., Comment: 32 pages, 20 figures. Submitted to the Astrophysical Journal

As current- and next-generation astronomical instruments come online, they will generate an unprecedented deluge of data. Analyzing these data in real time presents unique conceptual and computational challenges, and their long-term storage and archiving is scientifically essential for generating reliable, reproducible results. We present here the real-time processing (RTP) system for the Hydrogen Epoch of Reionization Array (HERA), a radio interferometer endeavoring to provide the first detection of the highly redshifted 21 cm signal from Cosmic Dawn and the Epoch of Reionization by an interferometer. The RTP system consists of analysis routines run on raw data shortly after they are acquired, such as calibration and detection of radio-frequency interference (RFI) events. RTP works closely with the Librarian, the HERA data storage and transfer manager which automatically ingests data and transfers copies to other clusters for post-processing analysis. Both the RTP system and the Librarian are public and open source software, which allows for them to be modified for use in other scientific collaborations. When fully constructed, HERA is projected to generate over 50 terabytes (TB) of data each night, and the RTP system enables the successful scientific analysis of these data., Comment: 15 pages, 3 figures, published in Astronomy and Computing

We explore the kinematics of 27 z~6 quasar host galaxies observed in [CII]-158 micron ([CII]) emission with the Atacama Large Millimeter/sub-millimeter Array at a resolution of ~0.25''. We find that nine of the galaxies show disturbed [CII] emission, either due to a close companion galaxy or recent merger. Ten galaxies have smooth velocity gradients consistent with the emission arising from a gaseous disk. The remaining eight quasar host galaxies show no velocity gradient, suggesting that the gas in these systems is dispersion-dominated. All galaxies show high velocity dispersions with a mean of 129+-10 km/s. To provide an estimate of the dynamical mass within twice the half-light radius of the quasar host galaxy, we model the kinematics of the [CII] emission line using our publicly available kinematic fitting code, qubefit. This results in a mean dynamical mass of 5.0+-0.8(+-3.5) x 10^10 Msun. Comparison between the dynamical mass and the mass of the supermassive black hole reveals that the sample falls above the locally derived bulge mass--black hole mass relation at 2.4sigma significance. This result is robust even if we account for the large systematic uncertainties. Using several different estimators for the molecular mass, we estimate a gas mass fraction of >10%, indicating gas makes up a large fraction of the baryonic mass of z~6 quasar host galaxies. Finally, we speculate that the large variety in [CII] kinematics is an indication that gas accretion onto z~6 super massive black holes is not caused by a single precipitating factor., Comment: 33 pages. Kinematic fitting code is available at https://github.com/mneeleman/qubefit

We present Giant Metrewave Radio Telescope (GMRT) 323 MHz radio continuum observations toward 13 radio-loud quasars at $z>5$, sampling the low-frequency synchrotron emission from these objects. Among the 12 targets successfully observed, we detected 10 above $4\sigma$ significance, while 2 remain undetected. All of the detected sources appear as point sources. Combined with previous radio continuum detections from the literature, 9 quasars have power-law spectral energy distributions throughout the radio range; for some the flux density drops with increasing frequency while it increases for others. Two of these sources appear to have spectral turnover. For the power-law-like sources, the power-law indices have a positive range between 0.18 and 0.67 and a negative values between $-0.90$ and $-0.27$. For the turnover sources, the radio peaks around $\sim1$ and $\sim10$ GHz in the rest frame, the optically thin indices are $-0.58$ and $-0.90$, and the optically thick indices are 0.50 and 1.20. A magnetic field and spectral age analysis of SDSS J114657.59+403708.6 at $z=5.01$ may indicate that the turnover is not caused by synchrotron self-absorption, but rather by free-free absorption by the high-density medium in the nuclear region. Alternatively, the apparent turnover may be an artifact of source variability. Finally, we calculated the radio loudness $R_{2500\rm\, \AA}$ for our sample, which spans a very wide range from 12$^{+13}_{-13}$ to 4982$^{+279}_{-254}$., Comment: 13 pages; Accepted by A&A

We present a characterization of the physical properties of a sample of 35 securely-detected, dusty galaxies in the deep ALMA 1.2-mm image obtained as part of the ALMA Spectroscopic Survey in the {\it Hubble} Ultra Deep Field (ASPECS) Large Program. This sample is complemented by 26 additional sources identified via an optical/infrared source positional prior. Using their well-characterized spectral energy distributions, we derive median stellar masses and star formation rates (SFR) of $4.8\times10^{10}~M_\odot$ and 30 $M_\odot$ yr$^{-1}$, and interquartile ranges of $(2.4-11.7)\times10^{10}~M_\odot$ and $20-50~M_\odot$ yr$^{-1}$, respectively. We derive a median spectroscopic redshift of 1.8 with an interquartile range $1.1-2.6$, significantly lower than submillimeter galaxies detected in shallower, wide-field surveys. We find that 59\%$\pm$13\%, 6\%$\pm$4\%, and 34\%$\pm$9\% of our sources are within, above and below $\pm0.4$ dex from the SFR-stellar mass relation or main-sequence (MS), respectively. The ASPECS galaxies closely follow the SFR-molecular gas mass relation and other previously established scaling relations, confirming a factor of five increase of the gas-to-stellar mass ratio from $z=0.5$ to $z=2.5$ and a mild evolution of the gas depletion timescales with a typical value of 0.7 Gyr at $z=1-3$. ASPECS galaxies located significantly below the MS, a poorly exploited parameter space, have low gas-to-stellar-mass ratios of $\sim0.1-0.2$ and long depletion timescales $>1$ Gyr. Galaxies along the MS dominate the cosmic density of molecular gas at all redshifts. Systems above the main sequence have an increasing contribution to the total gas reservoirs from $z<1$ to $z=2.5$, while the opposite is found for galaxies below the MS., Comment: ApJ published on Sept. 24, 2020. Contains 36 pages, 17 figures. Final version matching the proof reviewed article

The central challenge in 21~cm cosmology is isolating the cosmological signal from bright foregrounds. Many separation techniques rely on the accurate knowledge of the sky and the instrumental response, including the antenna primary beam. For drift-scan telescopes such as the Hydrogen Epoch of Reionization Array \citep[HERA, ][]{DeBoer2017} that do not move, primary beam characterization is particularly challenging because standard beam-calibration routines do not apply \citep{Cornwell2005} and current techniques require accurate source catalogs at the telescope resolution. We present an extension of the method from \citet{Pober2012} where they use beam symmetries to create a network of overlapping source tracks that break the degeneracy between source flux density and beam response and allow their simultaneous estimation. We fit the beam response of our instrument using early HERA observations and find that our results agree well with electromagnetic simulations down to a -20~dB level in power relative to peak gain for sources with high signal-to-noise ratio. In addition, we construct a source catalog with 90 sources down to a flux density of 1.4~Jy at 151~MHz., Comment: 22 pages, 22 figures, accepted for publication in ApJ

Characterizing the epoch of reionization (EoR) at $z\gtrsim 6$ via the redshifted 21 cm line of neutral Hydrogen (HI) is critical to modern astrophysics and cosmology, and thus a key science goal of many current and planned low-frequency radio telescopes. The primary challenge to detecting this signal is the overwhelmingly bright foreground emission at these frequencies, placing stringent requirements on the knowledge of the instruments and inaccuracies in analyses. Results from these experiments have largely been limited not by thermal sensitivity but by systematics, particularly caused by the inability to calibrate the instrument to high accuracy. The interferometric bispectrum phase is immune to antenna-based calibration and errors therein, and presents an independent alternative to detect the EoR HI fluctuations while largely avoiding calibration systematics. Here, we provide a demonstration of this technique on a subset of data from the Hydrogen Epoch of Reionization Array (HERA) to place approximate constraints on the brightness temperature of the intergalactic medium (IGM). From this limited data, at $z=7.7$ we infer "$1\sigma$" upper limits on the IGM brightness temperature to be $\le 316$ "pseudo" mK at $\kappa_\parallel=0.33$ "pseudo" $h$ Mpc$^{-1}$ (data-limited) and $\le 1000$ "pseudo" mK at $\kappa_\parallel=0.875$ "pseudo" $h$ Mpc$^{-1}$ (noise-limited). The "pseudo" units denote only an approximate and not an exact correspondence to the actual distance scales and brightness temperatures. By propagating models in parallel to the data analysis, we confirm that the dynamic range required to separate the cosmic HI signal from the foregrounds is similar to that in standard approaches, and the power spectrum of the bispectrum phase is still data-limited (at $\gtrsim 10^6$ dynamic range) indicating scope for further improvement in sensitivity as the array build-out continues., Comment: 22 pages, 12 figures (including sub-figures). Published in PhRvD. Abstract may be slightly abridged compared to the actual manuscript due to length limitations on arXiv

In 21 cm cosmology, precision calibration is key to the separation of the neutral hydrogen signal from very bright but spectrally-smooth astrophysical foregrounds. The Hydrogen Epoch of Reionization Array (HERA), an interferometer specialized for 21 cm cosmology and now under construction in South Africa, was designed to be largely calibrated using the self-consistency of repeated measurements of the same interferometric modes. This technique, known as "redundant-baseline calibration" resolves most of the internal degrees of freedom in the calibration problem. It assumes, however, on antenna elements with identical primary beams placed precisely on a redundant grid. In this work, we review the detailed implementation of the algorithms enabling redundant-baseline calibration and report results with HERA data. We quantify the effects of real-world non-redundancy and how they compare to the idealized scenario in which redundant measurements differ only in their noise realizations. Finally, we study how non-redundancy can produce spurious temporal structure in our calibration solutions--both in data and in simulations--and present strategies for mitigating that structure., Comment: 24 Pages, 19 Figures. Updated to match the accepted MNRAS version

We report Atacama Large Millimeter/submillimeter Array (ALMA) observations of CO $(8-7)$, $(9-8)$, $\rm H_{2}O (2_{0,2}-1_{1,1})$ and $\rm OH^{+} (1_{1}-0_{1})$ and NOrthern Extended Millimeter Array (NOEMA) observations of CO $(5-4)$, $(6-5)$, $(12-11)$ and $(13-12)$ towards the $z = 6.003$ quasar SDSS J231038.88+185519.7, aiming to probe the physical conditions of the molecular gas content of this source. We present the best sampled CO spectral line energy distribution (SLED) at $z = 6.003$, and analyzed it with the radiative transfer code MOLPOP-CEP. Fitting the CO SLED to a one-component model indicates a kinetic temperature $T_{\rm kin} = 228 \ \rm K$, molecular gas density $log (n(\rm H_{2})/\rm cm^{-3}$ )=4.75, and CO column density $log(N(\rm CO)/\rm cm^{-2}) =17.5$, although a two-component model better fits the data. In either case, the CO SLED is dominated by a "warm" and "dense" component. Compared to samples of local (Ultra) Luminous Infrared Galaxies ((U)LIRGs), starburst galaxies and high redshift Submillimeter Galaxies (SMGs), J2310+1855 exhibits higher CO excitation at ($J \geq 8$), like other high redshift quasars. The high CO excitation, together with the enhanced $L_{\rm H_{2}O}/ L_{IR} $, $L_{\rm H_{2}O}/ L_{CO} $ and $L_{OH^{+}}/L_{\rm H_{2}O} $ ratios, suggests that besides the UV radiation from young massive stars, other mechanisms such as shocks, cosmic rays and X-rays might also be responsible for the heating and ionization of the molecular gas. In the nuclear region probed by the molecular emissions lines, any of these mechanisms might be present due to the powerful quasar and the starburst activity., Comment: 21 pages, 7 figures, accepted for publication in Apj

We present a study of internal reflection and cross coupling systematics in Phase I of the Hydrogen Epoch of Reionization Array (HERA). In a companion paper, we outlined the mathematical formalism for such systematics and presented algorithms for modeling and removing them from the data. In this work, we apply these techniques to data from HERA's first observing season as a method demonstration. The data show evidence for systematics that, without removal, would hinder a detection of the 21 cm power spectrum for the targeted EoR line-of-sight modes in the range 0.2 < k_parallel < 0.5\ h^-1 Mpc. After systematic removal, we find we can recover these modes in the power spectrum down to the integrated noise-floor of a nightly observation, achieving a dynamic range in the EoR window of 10^-6 in power (mK^2 units) with respect to the bright galactic foreground signal. In the absence of other systematics and assuming the systematic suppression demonstrated here continues to lower noise levels, our results suggest that fully-integrated HERA Phase I may have the capacity to set competitive upper limits on the 21 cm power spectrum. For future observing seasons, HERA will have upgraded analog and digital hardware to better control these systematics in the field., Comment: Submitted to ApJ

The detection of the Epoch of Reionization (EoR) delay power spectrum using a "foreground avoidance method" highly depends on the instrument chromaticity. The systematic effects induced by the radio-telescope spread the foreground signal in the delay domain, which contaminates the EoR window theoretically observable. Applied to the Hydrogen Epoch of Reionization Array (HERA), this paper combines detailed electromagnetic and electrical simulations in order to model the chromatic effects of the instrument, and quantify its frequency and time responses. In particular, the effects of the analogue receiver, transmission cables, and mutual coupling are included. These simulations are able to accurately predict the intensity of the reflections occurring in the 150-m cable which links the antenna to the back-end. They also show that electromagnetic waves can propagate from one dish to another one through large sections of the array due to mutual coupling. The simulated system time response is attenuated by a factor $10^{4}$ after a characteristic delay which depends on the size of the array and on the antenna position. Ultimately, the system response is attenuated by a factor $10^{5}$ after 1400 ns because of the reflections in the cable, which corresponds to characterizable ${k_\parallel}$-modes above 0.7 $h\;\rm{Mpc}^{-1}$ at 150 MHz. Thus, this new study shows that the detection of the EoR signal with HERA Phase I will be more challenging than expected. On the other hand, it improves our understanding of the telescope, which is essential to mitigate the instrument chromaticity., Comment: 13 pages, 17 figures - Submitted to MNRAS - 2nd revision

In this white paper, we lay out a US roadmap for high-redshift 21 cm cosmology (30 < z < 6) in the 2020s. Beginning with the currently-funded HERA and MWA Phase II projects and advancing through the decade with a coordinated program of small-scale instrumentation, software, and analysis projects targeting technology development, this roadmap incorporates our current best understanding of the systematics confronting 21 cm cosmology into a plan for overcoming them, enabling next-generation, mid-scale 21 cm arrays to be proposed late in the decade. Submitted for consideration by the Astro2020 Decadal Survey Program Panel for Radio, Millimeter, and Submillimeter Observations from the Ground as a Medium-Sized Project., Comment: 10 pages (plus a cover page and references), 6 figures. Submitted as a APC White Paper for Astro2020

We report on ~0.35"(~2 kpc) resolution observations of the [CII] and dust continuum emission from five z>6 quasar host-companion galaxy pairs obtained with the Atacama Large Millimeter/submillimeter Array. The [CII] emission is resolved in all galaxies, with physical extents of 3.2-5.4 kpc. The dust continuum is on-average 40% more compact, which results in larger [CII] deficits in the center of the galaxies. However, the measured [CII] deficits are fully consistent with those found at lower redshifts. Four of the galaxies show [CII] velocity fields that are consistent with ordered rotation, while the remaining six galaxies show no clear velocity gradient. All galaxies have high (~80-200 km/s) velocity dispersions, consistent with the interpretation that the interstellar medium (ISM) of these high redshift galaxies is turbulent. By fitting the galaxies with kinematic models, we estimate the dynamical mass of these systems, which range between (0.3 -> 5.4) x 1E10 Msun. For the three closest separation galaxy pairs, we observe dust and [CII] emission from gas in between and surrounding the galaxies, which is an indication that tidal interactions are disturbing the gas in these systems. Although gas exchange in these tidal interactions could power luminous quasars, the existence of quasars in host galaxies without nearby companions suggests that tidal interactions are not the only viable method for fueling their active centers. These observations corroborate the assertion that accreting supermassive black holes do not substantially contribute to the [CII] and dust continuum emission of the quasar host galaxies, and showcase the diverse ISM properties of galaxies when the universe was less than one billion years old., Comment: 30 pages, 19 figures, Accepted for publication in ApJ

We present ALMA observations of the [CII] 158 $\mu$m fine structure line and dust continuum emission from two quasars, SDSS J104433.04-012502.2 and SDSS J012958.51-003539.7, at z=5.78. The ALMA observations at 0.2'' resolution map the dust and gas on kpc scales. The spatially resolved emission shows a similar trend of decreasing [CII]-FIR ratios with increasing FIR surface brightnesses as was found in the infrared luminous galaxies with intense star formation. We confirm the velocity gradients of [CII] emission found previously in SDSS J0129-0035. No clear evidence of order motion is detected in SDSS J1044-0125. The velocity maps and PV-diagrams also suggest turbulent gas clumps in both objects. We tentatively detect a [CII] peak offset 4.9 kpc to the East of SDSS J1044-0125. This may be associated with an infalling companion, or node of gas outflow. All these results suggest significant dynamical evolution of the ISM in the nuclear region of these young quasar-starburst systems. We fit the velocity map of the [CII] emission from SDSS J0129-0035 with a rotating disk model. The result suggests a face-on system with an inclination angle of 16 +/- 20 degree and constrains the lower limit of the host galaxy dynamical mass to be 2.6x10^10 Msun within the [CII] emitting region. It is likely that SDSS J0129-0035, as well as other young quasars with super massive black hole masses on order of 10^7 to 10^8 Msun, falls close to the black hole and host galaxy mass relation defined by local galaxies., Comment: 34 pages 11 figures, accepted for publication in ApJ

The Dark Ages are the period between the last scattering of the cosmic microwave background and the appearance of the first luminous sources, spanning approximately 1100 < z < 30. The only known way to measure fluctuations in this era is through the 21-cm line of neutral hydrogen. Such observations have enormous potential for cosmology, because they span a large volume while the fluctuations remain linear even on small scales. Observations of 21-cm fluctuations during this era can therefore constrain fundamental aspects of our Universe, including inflation and any exotic physics of dark matter. While the observational challenges to these low-frequency 21-cm observations are enormous, especially from the terrestrial environment, they represent an important goal for cosmology., Comment: 10 pages, 4 figures

The epoch of reionization, when photons from early galaxies ionized the intergalactic medium about a billion years after the Big Bang, is the last major phase transition in the Universe's history. Measuring the characteristics of the transition is important for understanding early galaxies and the cosmic web and for modeling dwarf galaxies in the later Universe. But such measurements require probes of the intergalactic medium itself. Here we describe how the 21-cm line of neutral hydrogen provides a powerful probe of the reionization process and therefore important constraints on both the galaxies and intergalactic absorbers at that time. While existing experiments will make precise statistical measurements over the next decade, we argue that improved 21-cm analysis techniques - allowing imaging of the neutral gas itself - as well as improved theoretical models, are crucial for testing our understanding of this important era., Comment: 8 pages, 4 figures

The early phases of galaxy formation constitute one of the most exciting frontiers in astrophysics. It is during this era that the first luminous sources reionize the intergalactic medium - the moment when structure formation affects every baryon in the Universe. Here we argue that we will obtain a complete picture of this era by combining observations of galaxies with direct measurements of the reionization process: the former will provide a detailed understanding of bright sources, while the latter will constrain the (substantial) faint source population. We further describe how optimizing the comparison of these two measurements requires near-infrared galaxy surveys covering large volumes and retaining redshift information and also improvements in 21-cm analysis, moving those experiments into the imaging regime., Comment: 9 pages, 3 figures

We present Karl G. Jansky Very Large Array (VLA) observations of the CO (2$-$1) line emission towards three far-infrared luminous quasars at $z\sim6$: SDSS J231038.88$+$185519.7 and SDSS J012958.51$-$003539.7 with $\sim0\farcs6$ resolution and SDSS J205406.42$-$000514.8 with $\sim2\farcs1$ resolution. All three sources are detected in the CO (2$-$1) line emission -- one source is marginally resolved, and the other two appear as point sources. Measurements of the CO (2$-$1) line emission allow us to calculate the molecular gas mass even without a CO excitation model. The inferred molecular gas masses are (0.8$-$4.3) $\times$ 10$^{10}$ $M_{\odot}$. The widths and redshifts derived from the CO (2$-$1) line are consistent with previous CO (6$-$5) and [\ion{C}{2}] measurements. We also report continuum measurements using the Herschel for SDSS J231038.88$+$185519.7 and SDSS J012958.51$-$003539.7, and for SDSS J231038.88+185519.7, data obtained at $\sim140$ and $\sim300$ GHz using the Atacama Large Millimeter/submillimeter Array (ALMA). In the case of SDSS J231038.88+185519.7, we present a detailed analysis of the spectral energy distribution and derive the dust temperature ($\sim40$ K), the dust mass ($\sim10^{9}$ $M_{\odot}$), the far-infrared luminosity (8$-$1000 $\mu$m; $\sim10^{13}$ $ L_{\odot}$) and the star formation rate (2400$-$2700 $M_{\odot}$ yr$^{-1}$). Finally, an analysis of the photo-dissociation regions associated with the three high redshift quasars indicates that the interstellar medium in these sources has similar properties to local starburst galaxies., Comment: 30 pages; submitted to ApJ; overall the referee's report is positive

Radio Frequency Interference (RFI) is an ever-present limiting factor among radio telescopes even in the most remote observing locations. When looking to retain the maximum amount of sensitivity and reduce contamination for Epoch of Reionization studies, the identification and removal of RFI is especially important. In addition to improved RFI identification, we must also take into account computational efficiency of the RFI-Identification algorithm as radio interferometer arrays such as the Hydrogen Epoch of Reionization Array grow larger in number of receivers. To address this, we present a Deep Fully Convolutional Neural Network (DFCN) that is comprehensive in its use of interferometric data, where both amplitude and phase information are used jointly for identifying RFI. We train the network using simulated HERA visibilities containing mock RFI, yielding a known "ground truth" dataset for evaluating the accuracy of various RFI algorithms. Evaluation of the DFCN model is performed on observations from the 67 dish build-out, HERA-67, and achieves a data throughput of 1.6$\times 10^{5}$ HERA time-ordered 1024 channeled visibilities per hour per GPU. We determine that relative to an amplitude only network including visibility phase adds important adjacent time-frequency context which increases discrimination between RFI and Non-RFI. The inclusion of phase when predicting achieves a Recall of 0.81, Precision of 0.58, and $F_{2}$ score of 0.75 as applied to our HERA-67 observations., Comment: 11 pages, 7 figures

We report on a search for the [CII] 158 micron emission line from galaxies associated with four high-metallicity damped Ly-alpha absorbers (DLAs) at z ~ 4 using the Atacama Large Millimeter/sub-millimeter Array (ALMA). We detect [CII] 158 micron emission from galaxies at the DLA redshift in three fields, with one field showing two [CII] emitters. Combined with previous results, we now have detected [CII] 158 micron emission from five of six galaxies associated with targeted high-metallicity DLAs at z ~ 4. The galaxies have relatively large impact parameters, ~16 - 45 kpc, [CII] 158 micron line luminosities of (0.36 - 30) x 10^8 Lsun, and rest-frame far-infrared properties similar to those of luminous Lyman-break galaxies, with star-formation rates of ~7 - 110 Msun yr-1. Comparing the absorption and emission line profiles yields a remarkable agreement between the line centroids, indicating that the DLA traces gas at velocities similar to that of the [CII] 158 micron emission. This disfavors a scenario where the DLA arises from gas in a companion galaxy. These observations highlight ALMA's unique ability to uncover a high redshift galaxy population that has largely eluded detection for decades., Comment: Accepted for publication in ApJL, 8 pages, 4 figures, 1 table

The Epoch of Reionization (EoR) is an uncharted era in our Universe's history during which the birth of the first stars and galaxies led to the ionization of neutral hydrogen in the intergalactic medium. There are many experiments investigating the EoR by tracing the 21cm line of neutral hydrogen. Because this signal is very faint and difficult to isolate, it is crucial to develop analysis techniques that maximize sensitivity and suppress contaminants in data. It is also imperative to understand the trade-offs between different analysis methods and their effects on power spectrum estimates. Specifically, with a statistical power spectrum detection in HERA's foreseeable future, it has become increasingly important to understand how certain analysis choices can lead to the loss of the EoR signal. In this paper, we focus on signal loss associated with power spectrum estimation. We describe the origin of this loss using both toy models and data taken by the 64-element configuration of the Donald C. Backer Precision Array for Probing the Epoch of Reionization (PAPER). In particular, we highlight how detailed investigations of signal loss have led to a revised, higher 21cm power spectrum upper limit from PAPER-64. Additionally, we summarize errors associated with power spectrum error estimation that were previously unaccounted for. We focus on a subset of PAPER-64 data in this paper; revised power spectrum limits from the PAPER experiment are presented in a forthcoming paper by Kolopanis et al. (in prep.) and supersede results from previously published PAPER analyses., Comment: 25 pages, 18 figures, Accepted by ApJ

We describe the CO Luminosity Density at High-z (COLDz) survey, the first spectral line deep field targeting CO(1-0) emission from galaxies at $z=1.95-2.85$ and CO(2-1) at $z=4.91-6.70$. The main goal of COLDz is to constrain the cosmic density of molecular gas at the peak epoch of cosmic star formation. By targeting both a wide ($\sim$51 arcmin$^2$) and a deep area ($\sim$9 arcmin$^2$), the survey is designed to robustly constrain the bright end and the characteristic luminosity of the CO(1-0) luminosity function. An extensive analysis of the reliability of our line candidates, and new techniques provide detailed completeness and statistical corrections as necessary to determine the best constraints to date on the CO luminosity function. Our blind search for CO(1-0) uniformly selects starbursts and massive Main Sequence galaxies based on their cold molecular gas masses. Our search also detects CO(2-1) line emission from optically dark, dusty star-forming galaxies at $z>5$. We find a range of spatial sizes for the CO-traced gas reservoirs up to $\sim40$ kpc, suggesting that spatially extended cold molecular gas reservoirs may be common in massive, gas-rich galaxies at $z\sim2$. Through CO line stacking, we constrain the gas mass fraction in previously known typical star-forming galaxies at $z=2$-3. The stacked CO detection suggests lower molecular gas mass fractions than expected for massive Main Sequence galaxies by a factor of $\sim3-6$. We find total CO line brightness at $\sim34\,$GHz of $0.45\pm0.2\,\mu$K, which constrains future line intensity mapping and CMB experiments., Comment: 53 pages, 22 figures, 8 tables, ApJ in press. Full resolution images and publicly available data may be found on the survey webpage at coldz.astro.cornell.edu

Foreground power dominates the measurements of interferometers that seek a statistical detection of highly-redshifted HI emission from the Epoch of Reionization (EoR). The chromaticity of the instrument creates a boundary in the Fourier transform of frequency (proportional to $k_\parallel$) between spectrally smooth emission, characteristic of the strong synchrotron foreground (the "wedge"), and the spectrally structured emission from HI in the EoR (the "EoR window"). Faraday rotation can inject spectral structure into otherwise smooth polarized foreground emission, which through instrument effects or miscalibration could possibly pollute the EoR window. Using data from the HERA 19-element commissioning array, we investigate the polarization response of this new instrument in the power spectrum domain. We perform a simple image-based calibration based on the unpolarized diffuse emission of the Global Sky Model, and show that it achieves qualitative redundancy between the nominally-redundant baselines of the array and reasonable amplitude accuracy. We construct power spectra of all fully polarized coherencies in all pseudo-Stokes parameters. We compare to simulations based on an unpolarized diffuse sky model and detailed electromagnetic simulations of the dish and feed, confirming that in Stokes I, the calibration does not add significant spectral structure beyond the expected level. Further, this calibration is stable over the 8 days of observations considered. Excess power is seen in the power spectra of the linear polarization Stokes parameters which is not easily attributable to leakage via the primary beam, and results from some combination of residual calibration errors and actual polarized emission. Stokes V is found to be highly discrepant from the expectation of zero power, strongly pointing to the need for more accurate polarized calibration., Comment: 21 pages, 12 figures, submitted to ApJ

We present new Atacama Large Millimeter/submillimeter Array (ALMA) observations of the dust continuum and [C II] 158 $\mu$m fine structure line emission towards a far-infrared-luminous quasar, ULAS J131911.29$+$095051.4 at $z=6.13$, and combine the new Cycle 1 data with ALMA Cycle 0 data. The combined data have an angular resolution $\sim$ $0.3$, and resolve both the dust continuum and the [C II] line emission on few kpc scales. The [C II] line emission is more irregular than the dust continuum emission which suggests different distributions between the dust and [C II]-emitting gas. The combined data confirm the [C II] velocity gradient that we previously detected in lower resolution ALMA image from Cycle 0 data alone. We apply a tilted ring model to the [C II] velocity map to obtain a rotation curve, and constrain the circular velocity to be 427 $\pm$ 55 km s$^{-1}$ at a radius of 3.2 kpc with an inclination angle of 34$^\circ$. We measure the dynamical mass within the 3.2 kpc region to be 13.4$_{-5.3}^{+7.8}$ $\times 10^{10}\,M_{\odot}$. This yields a black hole and host galaxy mass ratio of 0.020$_{-0.007}^{+0.013}$, which is about 4$_{-2}^{+3}$ times higher than the present-day $M_{\rm BH}$/$M_{\rm bulge}$ ratio. This suggests that the supermassive black hole grows the bulk of its mass before the formation of the most of stellar mass in this quasar host galaxy in the early universe., Comment: 24 pages, 5 figures, accepted for publication in ApJ

Gas surrounding high redshift galaxies has been studied through observations of absorption line systems toward background quasars for decades. However, it has proven difficult to identify and characterize the galaxies associated with these absorbers due to the intrinsic faintness of the galaxies compared to the quasars at optical wavelengths. Utilizing the Atacama Large Millimeter/Submillimeter Array, we report on detections of [CII] 158 micron line and dust continuum emission from two galaxies associated with two such absorbers at a redshift of z~4. Our results indicate that the hosts of these high-metallicity absorbers have physical properties similar to massive star-forming galaxies and are embedded in enriched neutral hydrogen gas reservoirs that extend well beyond the star-forming interstellar medium of these galaxies., Comment: Science; 25 pages, 6 color figures; see https://vimeo.com/209248385 for a related movie

We report Very Long Baseline Array (VLBA) observations of the 1.5 GHz radio continuum emission of the {\it z=6.326} quasar SDSS J010013.02+280225.8 (hereafter J0100+2802). J0100+2802 is, by far the most optically luminous, and radio-quiet quasar with the most massive black hole known at z>6. The VLBA observations have a synthesized beam size of 12.10 mas $\times$5.36 mas (FWHM), and detected the radio continuum emission from this object with a peak surface brightness of 64.6+/-9.0 micro-Jy/beam and a total flux density of 88+/-19 micro-Jy. The position of the radio peak is consistent with that from SDSS in the optical and Chandra in the X-ray. The radio source is marginally resolved by the VLBA observations. A 2-D Gaussian fit to the image constrains the source size to $\rm (7.1+/-3.5) mas x (3.1+/-1.7) mas. This corresponds to a physical scale of (40+/-20) pc x (18+/-10) pc. We estimate the intrinsic brightness temperature of the VLBA source to be T_{B}=(1.6 +/- 1.2) x 10^{7} K. This is significantly higher than the maximum value in normal star forming galaxies, indicating an AGN origin for the radio continuum emission. However, it is also significantly lower than the brightness temperatures found in highest redshift radio-loud quasars. J0100+2802 provides a unique example to study the radio activity in optically luminous and radio quiet active galactic nuclei in the early universe. Further observations at multiple radio frequencies will accurately measure the spectral index and address the dominant radiation mechanism of the radio emission., Comment: 11 pages, 2 figures, accepted for publication in ApJLetter

The experimental efforts to detect the redshifted 21 cm signal from the Epoch of Reionization (EoR) are limited predominantly by the chromatic instrumental systematic effect. The delay spectrum methodology for 21 cm power spectrum measurements brought new attention to the critical impact of an antenna's chromaticity on the viability of making this measurement. This methodology established a straightforward relationship between time-domain response of an instrument and the power spectrum modes accessible to a 21 cm EoR experiment. We examine the performance of a prototype of the Hydrogen Epoch of Reionization Array (HERA) array element that is currently observing in Karoo desert, South Africa. We present a mathematical framework to derive the beam integrated frequency response of a HERA prototype element in reception from the return loss measurements between 100-200 MHz and determined the extent of additional foreground contamination in the delay space. The measurement reveals excess spectral structures in comparison to the simulation studies of the HERA element. Combined with the HERA data analysis pipeline that incorporates inverse covariance weighting in optimal quadratic estimation of power spectrum, we find that in spite of its departure from the simulated response, HERA prototype element satisfies the necessary criteria posed by the foreground attenuation limits and potentially can measure the power spectrum at spatial modes as low as $k_{\parallel} > 0.1h$~Mpc$^{-1}$. The work highlights a straightforward method for directly measuring an instrument response and assessing its impact on 21 cm EoR power spectrum measurements for future experiments that will use reflector-type antenna., Comment: 13 pages, 10 figures, Submitted to APJ