1. Comprehensive genomic profiling reveals inactivating SMARCA4 mutations and low tumor mutational burden in small cell carcinoma of the ovary, hypercalcemic-type.
- Author
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Lin DI, Chudnovsky Y, Duggan B, Zajchowski D, Greenbowe J, Ross JS, Gay LM, Ali SM, and Elvin JA
- Subjects
- Adolescent, Adult, Carcinoma, Small Cell blood, Carcinoma, Small Cell enzymology, Carcinoma, Small Cell pathology, Cohort Studies, DNA Helicases metabolism, Female, Gene Silencing, Germ-Line Mutation, Humans, Hypercalcemia enzymology, Hypercalcemia pathology, Middle Aged, Nuclear Proteins metabolism, Ovarian Neoplasms blood, Ovarian Neoplasms enzymology, Ovarian Neoplasms pathology, Transcription Factors metabolism, Transcriptome, Young Adult, Carcinoma, Small Cell genetics, DNA Helicases genetics, Hypercalcemia genetics, Nuclear Proteins genetics, Ovarian Neoplasms genetics, Transcription Factors genetics
- Abstract
Objective: Small cell carcinoma of the ovary, hypercalcemic-type (SCCOHT) is a rare, extremely aggressive neoplasm that usually occurs in young women and is characterized by deleterious germline or somatic SMARCA4 mutations. We performed comprehensive genomic profiling (CGP) to potentially identify additional clinically and pathophysiologically relevant genomic alterations in SCCOHT., Methods: CGP assessment of all classes of coding alterations in up to 406 genes commonly altered in cancer and intronic regions for up to 31 genes commonly rearranged in cancer was performed on 18 SCCOHT cases (16 exhibiting classic morphology and 2 cases exhibiting exclusive a large cell variant morphology). In addition, a retrospective database search for clinically advanced ovarian tumors with genomic profiles similar to SCCOHT yielded 3 additional cases originally diagnosed as non-SCCOHT., Results: CGP revealed inactivating SMARCA4 alterations and low tumor mutational burden (TMB) (<6mutations/Mb) in 94% (15/16) of SCCOHT with classic morphology. In contrast, both (2/2) cases exhibiting only large cell variant morphology were hypermutated (TMB scores of 90 and 360mut/Mb) and were wildtype for SMARCA4. In our retrospective search, an index ovarian cancer patient harboring inactivating SMARCA4 alterations, initially diagnosed as endometrioid carcinoma, was re-classified as SCCOHT and responded to an SCCOHT chemotherapy regimen., Conclusion: The vast majority of SCCOHT demonstrate genomic SMARCA4 loss with only rare co-occurring alterations. Our data support a role for CGP in the diagnosis and management of SCCOHT and of other lesions with overlapping histological and clinical features, since identifying the former by genomic profile suggests benefit from an appropriate regimen and treatment decisions, as illustrated by an index patient., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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