20 results on '"Cannabinoid ligands"'
Search Results
2. Editorial: The Canonical and Non-Canonical Endocannabinoid System as a Target in Cancer and Acute and Chronic Pain
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Marialessandra Contino and Peter J. McCormick
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cancer ,cannabinoid receptors (CB1 and CB2) ,ECS endocannabinoid system ,pain ,cannabinoid ligands ,Therapeutics. Pharmacology ,RM1-950 - Published
- 2020
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3. A COMPUTATIONAL STUDY OF CANNABINOID RECEPTORS AND CANNABINOID LIGANDS.
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Sapundzhi, Fatima and Dzimbova, Tatyana
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G protein coupled receptors , *LIGANDS (Chemistry) , *STRUCTURE-activity relationships , *MOLECULAR docking , *CANNABINOID receptors , *MOLECULAR models - Abstract
The endocannabinoid system consists of endocannabinoids, cannabinoid receptors and enzymes that synthesise and degrade the endocannabinoids. The cannabinoid receptors (CBR) are an important class of receptors participating in various physiological processes. Many of their effects are mediated by two G protein-coupled receptors (GPCRs), (CB1) and (CB2), although additional receptors may be involved. The purpose of this paper is to present a computer modelling of the CBR and several known cannabinoid ligands aiming to determine the structure-activity relationship by using molecular docking with GOLD software. Four scoring functions provided by GOLD are used for molecular docking of the models of CBR1, its crystal structure and the known cannabinoid ligands. Significant correlations between the biological activity of the ligands and the ChemScore optimization function are established. The results obtained could be further used for in silico experiments of the interaction between CBR and cannabinoid ligands. [ABSTRACT FROM AUTHOR]
- Published
- 2020
4. Abnormal Cannabidiol Affects Production of Pro-Inflammatory Mediators and Astrocyte Wound Closure in Primary Astrocytic-Microglial Cocultures
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Julian Cardinal von Widdern, Tim Hohmann, and Faramarz Dehghani
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abnormal cannabidiol ,astrocytes ,cannabinoid ligands ,inflammation ,interleukin-6 ,microglia ,neuroinflammation ,nitric oxide ,synthetic cannabinoids ,tumor necrosis factor α ,Organic chemistry ,QD241-441 - Abstract
Abnormal cannabidiol (abn-CBD) exerts neuroprotective effects in vivo and in vitro. In the present study, we investigated the impact of abn-CBD on the glial production of proinflammatory mediators and scar formation within in vitro models. Primary astrocytic-microglial cocultures and astrocytic cultures from neonatal C57BL/6 mice and CB2 receptor knockout mice were stimulated with lipopolysaccharide (LPS), and the concentrations of tumor necrosis factor α (TNFα), interleukin-6 (IL-6) and nitrite were determined. Furthermore, we performed a live cell microscopy-based scratch-wound assay. After LPS stimulation, TNFα, IL-6 and nitrite production was more strongly increased in cocultures than in isolated astrocytes. Abn-CBD treatment attenuated the LPS-induced production of TNFα and nitrite in cocultures, while IL-6 production remained unaltered. In isolated astrocytes, only LPS-induced TNFα production was reduced by abn-CBD. Similar effects were observed after abn-CBD application in cocultures of CB2 knockout mice. Interestingly, LPS-induced TNFα and nitrite levels were far lower in CB2 knockout cultures compared to wildtypes, while IL-6 levels did not differ. In the scratch-wound assay, treatment with abn-CBD decelerated wound closure when microglial cells were present. Our data shows a differential role of abn-CBD for modulation of glial inflammation and astrocytic scar formation. These findings provide new explanations for mechanisms behind the neuroprotective potential of abn-CBD.
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- 2020
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5. Cannabinoid receptor type-1: breaking the dogmas [version 1; referees: 3 approved]
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Arnau Busquets Garcia, Edgar Soria-Gomez, Luigi Bellocchio, and Giovanni Marsicano
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Review ,Articles ,Behavioral Neuroscience ,Cognitive Neuroscience ,Molecular Pharmacology ,Neural Homeostasis ,Neuronal & Glial Cell Biology ,Neuronal Signaling Mechanisms ,Neuropharmacology & Psychopharmacology ,Pain Management: Chronic Clinical ,Endocannabinoid system ,allosteric modulator ,molecular pharmacology ,cannabinoid ligands ,CB1 receptor signaling - Abstract
The endocannabinoid system (ECS) is abundantly expressed in the brain. This system regulates a plethora of physiological functions and is composed of cannabinoid receptors, their endogenous ligands (endocannabinoids), and the enzymes involved in the metabolism of endocannabinoids. In this review, we highlight the new advances in cannabinoid signaling, focusing on a key component of the ECS, the type-1 cannabinoid receptor (CB 1). In recent years, the development of new imaging and molecular tools has demonstrated that this receptor can be distributed in many cell types (e.g., neuronal or glial cells) and intracellular compartments (e.g., mitochondria). Interestingly, cellular and molecular effects are differentially mediated by CB 1 receptors according to their specific localization (e.g., glutamatergic or GABAergic neurons). Moreover, this receptor is expressed in the periphery, where it can modulate periphery-brain connections. Finally, the better understanding of the CB 1 receptor structure led researchers to propose interesting and new allosteric modulators. Thus, the advances and the new directions of the CB 1 receptor field will provide new insights and better approaches to profit from its interesting therapeutic profile.
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- 2016
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6. Interactions of Cannabinoids With Biochemical Substrates.
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Thomas, Brian F.
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CANNABIS (Genus) , *CELLULAR signal transduction , *CENTRAL nervous system , *DRUGS , *DRUG design , *DRUGS of abuse , *ENERGY metabolism , *PERIPHERAL nervous system , *NEUROTRANSMITTERS , *RADIOGRAPHY - Abstract
Recent decades have seen much progress in the identification and characterization of cannabinoid receptors and the elucidation of the mechanisms by which derivatives of the Cannabis sativa plant bind to receptors and produce their physiological and psychological effects. The information generated in this process has enabled better understanding of the fundamental physiological and psychological processes controlled by the central and peripheral nervous systems and has fostered the development of natural and synthetic cannabinoids as therapeutic agents. A negative aspect of this decades-long effort is the proliferation of clandestinely synthesized analogs as recreational street drugs with dangerous effects. Currently, the interactions of cannabinoids with their biochemical substrates are extensively but inadequately understood, and the clinical application of derived and synthetic receptor ligands remains quite limited. The wide anatomical distribution and functional complexity of the cannabinoid system continue to indicate potential for both therapeutic and side effects, which offers challenges and opportunities for medicinal chemists involved in drug discovery and development. [ABSTRACT FROM AUTHOR]
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- 2017
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7. Structure–affinity relationships and pharmacological characterization of new alkyl-resorcinol cannabinoid receptor ligands: Identification of a dual cannabinoid receptor/TRPA1 channel agonist.
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Brizzi, Antonella, Aiello, Francesca, Marini, Pietro, Cascio, Maria Grazia, Corelli, Federico, Brizzi, Vittorio, De Petrocellis, Luciano, Ligresti, Alessia, Luongo, Livio, Lamponi, Stefania, Maione, Sabatino, Pertwee, Roger G., and Di Marzo, Vincenzo
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STRUCTURE-activity relationships , *ALKYL compounds , *RESORCINOL , *CANNABINOID receptors , *LIGANDS (Biochemistry) , *PHARMACOLOGY - Abstract
In our ongoing program aimed at deeply investigating the endocannabinoid system (ES), a set of new alkyl-resorcinol derivatives was prepared focusing on the nature and the importance of the carboxamide functionality. Binding studies on CB 1 and CB 2 receptors, monoacylglycerol lipase (MAGL) and fatty acid amide hydrolase (FAAH) showed that some of the newly developed compounds behaved as very potent cannabinoid receptor ligands ( K i in the nanomolar range) while, however, none of them was able to inhibit MAGL and/or FAAH. Derivative 11 was a potent CB 1 and CB 2 ligand, with K i values similar to WIN 55,212, exhibiting a CB 1 and CB 2 agonist profile in vitro. In the formalin test of peripheral acute and inflammatory pain in mice, this compound showed a weak and delayed antinociceptive effect against the second phase of the nocifensive response, exhibiting, interestingly, a quite potent transient receptor potential ankyrin type-1 (TRPA1) channel agonist activity. Moreover, derivative 14 , characterized by lower affinity but higher CB 2 selectivity than 11 , proved to behave as a weak CB 2 competitive inverse agonist. [ABSTRACT FROM AUTHOR]
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- 2014
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8. The Canonical and Non-Canonical Endocannabinoid System as a Target in Cancer and Acute and Chronic Pain
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Marialessandra Contino and Peter J. McCormick
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Pharmacology ,cannabinoid ligands ,business.industry ,lcsh:RM1-950 ,Chronic pain ,ECS endocannabinoid system ,Cancer ,medicine.disease ,Bioinformatics ,Endocannabinoid system ,Editorial ,lcsh:Therapeutics. Pharmacology ,Non canonical ,medicine ,cancer ,Pharmacology (medical) ,pain ,cannabinoid receptors (CB1 and CB2) ,business - Published
- 2020
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9. Investigations on the 4-quinolone-3-carboxylic acid motif. 6. Synthesis and pharmacological evaluation of 7-substituted quinolone-3-carboxamide derivatives as high affinity ligands for cannabinoid receptors
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Pasquini, Serena, De Rosa, Maria, Ligresti, Alessia, Mugnaini, Claudia, Brizzi, Antonella, Caradonna, Nicola P., Cascio, Maria Grazia, Bolognini, Daniele, Pertwee, Roger G., Di Marzo, Vincenzo, and Corelli, Federico
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QUINOLONE antibacterial agents , *CARBOXYLIC acids , *CARBOXAMIDES , *CHEMICAL affinity , *LIGANDS (Biochemistry) , *CANNABINOID receptors - Abstract
Abstract: Within our studies on structure–activity relationships of 4-quinolone-3-carboxamides as cannabinoid ligands, a new series of compounds characterized by a fluoro or phenylthio group at 7-position and different substituents at N1 and carboxamide nitrogen were synthesized and evaluated for their binding ability to cannabinoid type 1 (CB1) and type 2 (CB2) receptors. Most of the compounds showed affinity for one or both cannabinoid receptors at nanomolar concentration, with K i(CB1) and K i(CB2) values ranging from 2.45 to >10,000 nM and from 0.09 to 957 nM, respectively. The N-(3,4-dichlorobenzyl)amide derivatives 27 and 40 displayed relatively low affinity, but high selectivity towards the CB1 receptor. Compounds 4 and 40, a CB2 and a CB1 ligand, respectively, behaved as partial agonists in the [35S]GTPγS assay. They showed very low permeability through (MDCK-MDR1) cells and might, therefore, represent possible lead structures for further optimization in the search for cannabinoid ligands unable to cross the blood–brain barrier. [Copyright &y& Elsevier]
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- 2012
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10. Chemical Probes for the Recognition of Cannabinoid Receptors in Native Systems.
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Martín-Couce, Lidia, Martín-Fontecha, Mar, Palomares, Óscar, Mestre, Leyre, Cordomí, Arnau, Hernangomez, Miriam, Palma, Sara, Pardo, Leonardo, Guaza, Carmen, López-Rodríguez, María L., and Ortega-Gutiérrez, Silvia
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- 2012
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11. Characterization of cannabinoid-binding sites in zebrafish brain
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Rodriguez-Martin, Ivan, de Velasco, Ezequiel Marron Fdez, and Rodriguez, Raquel E.
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ZEBRA danio , *BRAIN , *CANNABINOIDS , *LIGANDS (Biochemistry) - Abstract
Abstract: We present here the pharmacological characterization of cannabinoid-binding sites in zebrafish brain homogenates using radiolabeled binding techniques. The nonselective agonist [3H]-CP55940 binds with high affinity (K D =0.50±0.06nM and a B max =1047±36.01fmol/mg protein), displaying one binding site. The slightly CB2 selective agonist [3H]-WIN55212-2 also binds with high affinity to zebrafish brain membranes displaying two different binding sites with affinities K D1 =0.35±0.09nM and K D2 =105.81±66.36nM. Competition binding assays using [3H]-WIN55212-2 and several unlabeled ligands were performed. WIN55212-2 significantly displaced the tritiated ligand binding showing the two binding sites observed with its tritiated homologous, while the slightly selective CB1 cannabinoid ligand HU-210, the nonselective cannabinoid ligand CP55940 and the endogenous cannabinoid ligand anandamide presented one binding site. Also, the functionality of these cannabinoid sites was analyzed using the known [35S]GTPγS assay. All the agonist used presented an agonist profile and the rank order for potency was HU-210>WIN55212-2>CP55940>anandamide. Our results provide evidence that, although some of the typical cannabinoid ligands for mammalian receptors do not fully recognize the cannabinoid-binding sites in zebrafish brain, the activity of the endogenous zebrafish cannabinoid system might not significantly differ from that displayed by the cannabinoid system described in other species. Hence the study of zebrafish cannabinoid activity may contribute to an understanding of the endogenous cannabinoid system in higher vertebrates. [Copyright &y& Elsevier]
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- 2007
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12. Editorial: The Canonical and Non-Canonical Endocannabinoid System as a Target in Cancer and Acute and Chronic Pain.
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Contino, Marialessandra and McCormick, Peter J.
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CHRONIC pain ,CANCER ,PROSTATE cancer ,NEUROLOGICAL disorders ,LUNG cancer ,LONG-term synaptic depression ,CANNABINOID receptors ,CANCER pain - Abstract
Keywords: cancer; cannabinoid receptors (CB1 and CB2); ECS endocannabinoid system; pain; cannabinoid ligands The endocannabinoid system (ECS) comprises the canonical receptor subtypes CB1R and CB2R and endocannabinoids (anandamide, AEA and 2-arachidonoylglycerol, 2-AG), and a "non-canonical" extended signaling network consisting of: (i) other fatty acid derivatives; (ii) the defined "ionotropic cannabinoid receptors" (TRP channels); other GPCRs (GPR55, PPAR ); (iii) enzymes involved in the biosynthesis and degradation of endocannabinoids (FAAH and MAGL); and (iv) protein transporters (FABP family) ([12]; [6]).The ECS is currently a hot topic due to its involvement in cancer and pain. The authors highlight the regulation of the two canonical receptor subtypes CB1R and CB2R in malignant tissue, emphasizing the involvement in cancer onset and progression of the biosynthetic and degradation enzymes. Cancer, cannabinoid receptors (CB1 and CB2), ECS endocannabinoid system, pain, cannabinoid ligands. [Extracted from the article]
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- 2020
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13. Synthetic bioactive olivetol-related amides: the influence of the phenolic group in cannabinoid receptor activity
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Roger G. Pertwee, Luciano De Petrocellis, Serena Boccella, Federica Pessina, Maria Frosini, Alessia Ligresti, Claudia Mugnaini, Clementina Manera, Antonella Brizzi, Vincenzo Di Marzo, Livio Luongo, Federico Corelli, Maria Grazia Cascio, Francesca Gado, Pietro Marini, Sabatino Maione, and Francesca Aiello
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Male ,Cannabinoid receptor ,Cannabinoid Receptor Modulators ,Stereochemistry ,medicine.medical_treatment ,Clinical Biochemistry ,TRPV Cation Channels ,Pharmaceutical Science ,Antinociceptive effect ,Olivetol ,01 natural sciences ,Biochemistry ,Transient receptor potential vanilloid type-1 channel ,Cell Line ,Mice ,Structure-Activity Relationship ,chemistry.chemical_compound ,Alkylresorcinol ,Cannabinoid ligands ,Drug Discovery ,Dual ligand ,medicine ,Animals ,Humans ,Inverse agonist ,Receptors, Cannabinoid ,Molecular Biology ,Analgesics ,Alkylresorcinols ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,Resorcinols ,Amides ,Rats ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,chemistry ,Competitive antagonist ,Endocannabinoids ,Cannabinoid receptor binding ,Molecular Medicine ,lipids (amino acids, peptides, and proteins) ,Cannabinoid ,Cannabinoid ligands, Transient receptor potential vanilloid type-1 channel, Endocannabinoids, Alkylresorcinols, Antinociceptive effect, Dual ligand - Abstract
Focusing on the importance of the free phenolic hydroxyl moiety, a family of 23 alkylresorcinol-based compounds were developed and evaluated for their cannabinoid receptor binding properties. The non-symmetrical hexylresorcinol derivative 29 turned out to be a CB2-selective competitive antagonist/inverse agonist endowed with good potency. Both the olivetol- and 5-(2-methyloctan-2-yl)resorcinol-based derivatives 23 and 24 exhibited a significant antinociceptive activity. Interestingly, compound 24 proved to be able to activate both cannabinoid and TRPV1 receptors. Even if cannabinoid receptor subtype selectivity remained a goal only partially achieved, results confirm the validity of the alkylresorcinol nucleus as skeleton for the identification of potent cannabinoid receptor modulators.
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- 2020
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14. Evaluation of (Z)-2-((1-benzyl-1H-indol-3-yl)methylene)-quinuclidin-3-one analogues as novel, high affinity ligands for CB1 and CB2 cannabinoid receptors
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Madadi, Nikhil Reddy, Penthala, Narsimha Reddy, Brents, Lisa K., Ford, Benjamin M., Prather, Paul L., and Crooks, Peter A.
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BENZYL compounds , *INDOLE compounds , *CARBENES , *QUINUCLIDINES , *LIGANDS (Biochemistry) , *CANNABINOID receptors , *OSTEOPOROSIS - Abstract
Abstract: A small library of N-benzyl indolequinuclidinone (IQD) analogs has been identified as a novel class of cannabinoid ligands. The affinity and selectivity of these IQDs for the two established cannabinoid receptor subtypes, CB1 and CB2, was evaluated. Compounds 8 (R=R2 =H, R1 =F) and 13 (R=COOCH3, R1 =R2 =H) exhibited high affinity for CB2 receptors with K i values of 1.33 and 2.50nM, respectively, and had lower affinities for the CB1 receptor (K i values of 9.23 and 85.7nM, respectively). Compound 13 had the highest selectivity of all the compounds examined, and represents a potent cannabinoid ligand with 34-times greater selectivity for CB2R over CB1R. These findings are significant for future drug development, given recent reports demonstrating beneficial use of cannabinoid ligands in a wide variety of human disease states including drug abuse, depression, schizophrenia, inflammation, chronic pain, obesity, osteoporosis and cancer. [Copyright &y& Elsevier]
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- 2013
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15. 7-Azaindolequinuclidinones (7-AIQD): A novel class of cannabinoid 1 (CB1) and cannabinoid 2 (CB2) receptor ligands.
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Penthala, Narsimha Reddy, Shoeib, Amal, Dachavaram, Soma Shekar, Cabanlong, Christian V., Yang, Jingfang, Zhan, Chang-Guo, Prather, Paul L., and Crooks, Peter A.
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CANNABINOID receptors , *STRUCTURE-activity relationships , *BINDING site assay , *MOLECULAR docking , *STRUCTURAL optimization , *BINDING energy - Abstract
A series of N -benzyl-7-azaindolequinuclidinone (7-AIQD) analogs have been synthesized and evaluated for affinity toward CB1 and CB2 cannabinoid receptors and identified as a novel class of cannabinoid receptor ligands. Structure–activity relationship (SAR) studies indicate that 7-AIQD analogs are dual CB1/CB2 receptor ligands exhibiting high potency with somewhat greater selectivity towards CB2 receptors compared to the previously reported indolequinuclidinone (IQD) analogs. Initial binding assays showed that 7-AIQD analogs 8b , 8d , 8f , 8g and 9b (1 μM) produced more that 50% displacement of the CB1/CB2 non-selective agonist CP-55,940 (0.1 nM). Furthermore, Ki values determined from full competition binding curves showed that analogs 8a , 8b and 8g exhibit high affinity (110, 115 and 23.7 nM, respectively) and moderate selectivity (26.3, 6.1 and 9.2-fold, respectively) for CB2 relative to CB1 receptors. Functional studies examining modulation of G-protein activity demonstrated that 8a acts as a neutral antagonist at CB1 and CB2 receptors, while 8b exhibits inverse agonist activity at these receptors. Analogs 8f and 8g exhibit different intrinsic activities, depending on the receptor examined. Molecular docking and binding free energy calculations for the most active compounds (8a , 8b , 8f , and 8g) were performed to better understand the CB2 receptor-selective mechanism at the atomic level. Compound 8g exhibited the highest predicted binding affinity at both CB1 and CB2 receptors, and all four compounds were shown to have higher predicted binding affinities with the CB2 receptor compared to their corresponding binding affinities with the CB1 receptor. Further structural optimization of 7-AIQD analogs may lead to the identification of potential clinical agents. [ABSTRACT FROM AUTHOR]
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- 2020
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16. Abnormal Cannabidiol Affects Production of Pro-Inflammatory Mediators and Astrocyte Wound Closure in Primary Astrocytic-Microglial Cocultures.
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Cardinal von Widdern, Julian, Hohmann, Tim, Dehghani, Faramarz, and Downer, Eric J.
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CANNABIDIOL ,TUMOR necrosis factors ,MICROGLIA ,KNOCKOUT mice ,ASTROCYTES ,INTERLEUKIN-6 ,CHONDROITIN sulfate proteoglycan - Abstract
Abnormal cannabidiol (abn-CBD) exerts neuroprotective effects in vivo and in vitro. In the present study, we investigated the impact of abn-CBD on the glial production of proinflammatory mediators and scar formation within in vitro models. Primary astrocytic-microglial cocultures and astrocytic cultures from neonatal C57BL/6 mice and CB
2 receptor knockout mice were stimulated with lipopolysaccharide (LPS), and the concentrations of tumor necrosis factor α (TNFα), interleukin-6 (IL-6) and nitrite were determined. Furthermore, we performed a live cell microscopy-based scratch-wound assay. After LPS stimulation, TNFα, IL-6 and nitrite production was more strongly increased in cocultures than in isolated astrocytes. Abn-CBD treatment attenuated the LPS-induced production of TNFα and nitrite in cocultures, while IL-6 production remained unaltered. In isolated astrocytes, only LPS-induced TNFα production was reduced by abn-CBD. Similar effects were observed after abn-CBD application in cocultures of CB2 knockout mice. Interestingly, LPS-induced TNFα and nitrite levels were far lower in CB2 knockout cultures compared to wildtypes, while IL-6 levels did not differ. In the scratch-wound assay, treatment with abn-CBD decelerated wound closure when microglial cells were present. Our data shows a differential role of abn-CBD for modulation of glial inflammation and astrocytic scar formation. These findings provide new explanations for mechanisms behind the neuroprotective potential of abn-CBD. [ABSTRACT FROM AUTHOR]- Published
- 2020
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17. Chemical probes for the recognition of cannabinoid receptors in native systems
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Silvia Ortega-Gutiérrez, Sara Palma, Oscar Palomares, Miriam Hernangómez, Arnau Cordomí, Lidia Martín-Couce, María L. López-Rodríguez, Mar Martín-Fontecha, Carmen Guaza, Leonardo Pardo, Leyre Mestre, Ministerio de Economía y Competitividad (España), and Comunidad de Madrid
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Cannabinoid receptor ,Protein Conformation ,Chemical probes ,Biotin ,Molecular Dynamics Simulation ,Hippocampus ,Monocytes ,Catalysis ,Receptor, Cannabinoid, CB2 ,Protein models ,Immune system ,Receptor, Cannabinoid, CB1 ,Cannabinoid ligands ,Membrane proteins ,medicine ,Animals ,Humans ,Dronabinol ,Receptor ,Cells, Cultured ,Neurons ,Microglia ,Bioorganic chemistry ,Cannabinoids ,Chemistry ,General Medicine ,General Chemistry ,Endogenous cannabinoid ,Flow Cytometry ,Rats ,Cell biology ,Neuroprotective Agents ,medicine.anatomical_structure ,Biochemistry ,Molecular Probes ,Protein model - Abstract
Receptors made visible: The described biotin-tagged small-molecule probes with excellent affinities for the CB 1 and CB 2 cannabinoid receptors (CB 1R and CB 2R) enable direct visualization of these receptors in native cellular systems, including neurons (see picture), microglia, and immune cells. This method could overcome some of the limitations of current methodologies and may help to dissect the complexity of the endogenous cannabinoid system. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim., Spanish Ministerio de Economía y Competitividad. Grant Numbers: MINECO, SAF2010‐22198, SAF2010‐17501, SAF2008‐04053 Comunidad de Madrid. Grant Number: S2010/BMD‐2353
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- 2012
18. Cannabinoid ligands sorting out by a 3D-QSAR approach using catalyst/hypogen
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Tromelin, Anne, Guichard, Elisabeth, Centre des Sciences du Goût et de l'Alimentation (CSGA), Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS), and ProdInra, Migration
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[SDV] Life Sciences [q-bio] ,CANNABINOID LIGANDS ,[SDV]Life Sciences [q-bio] ,CATALYST/HYPOGEN ,3D-QSAR APPROACH - Abstract
National audience; Understanding how molecular structures are involved in recognition by a biological receptor is a decisive step in drug design, and could constitute an intricate problem because of existence of several binding sites, as is the case of GPCRs (1) that constitute the largest class of membrane receptors. In this context, identification of pharmacophores that should differentiate multiple binding modes is of particular interest. We have recently applied to ligands of a human olfactory receptor an original sorting-out procedure carried out using Catalyst/HypoGen software (Accelrys Ltd) (2). We aimed to validate this sorting out procedure using literature data, and in this way, we focused on CB1 agonists and antagonist. Indeed, CB1 ligands present several qualities: they have been extensively studied since several years, and it is now admitted that sites of cannabinoid agonists are distinguishable from binding sites of cannabinoid antagonists (3). Furthermore, CB1 receptor possess two distinct subsites for ligand binding (4,5). We used two training sets: the first one (P-23) constituted by 23 classical cannabinoids CB1 agonists (6), the second one (C-29) by 29 CB1 antagonists (7). Hypothesis generation was carried out separately on the two sets P-23 and C-29, and on the whole set (PC-53), testing several features associations of five features: Hydrogen Bond Acceptor (HBA), Hydrogen Bond Donor (HBD), Hydrophobic (HY), Hydrophobic Aliphatic (HYAL), Ring Aromatic (RA). The best significant hypothesis obtained for group P-23 was constituted by 1 HY, 3 HYAL and 1 RA (cost=160, correl=0.89, Config=15.5, fixed cost=66.7, null cost=500), whereas 1 HY, 2 HYAL and 1 HBD constituted the best significant hypothesis obtained for group C-29 (cost=186, correl=0.89, Config=15.9, fixed cost=80, null cost=554). Ten hypotheses were obtained starting from the merged group PC-53; two HBA and two HY constituted the best significant hypothesis (cost=569, correl=0.84, Config=14, fixed cost=128, null cost=1585). On the basis of compound's alignment, we identified two subsets that allowed to obtain significant models. The first one is constituted by 6 agonists (group P-6), and the second one by 5 antagonists (C-5). Activities estimation and addition of well estimated compounds respectively in the subsets P-6 and C-5 led to obtain two new groups: P-13 (best significant hypothesis: 2 HY, 2 HYAL, 1 RA, cost=47, correl=0.99, Config=15, fixed cost=44.5, null cost=237) and C-23 (best significant hypothesis: 2 HY, 2 HYAL, 1 HBD, cost=75, correl=0.98, Config=15, fixed cost=67, null cost=243). We have thus successfully separate agonists from antagonist; moreover our procedure allowed to improve the quality of both agonists and antagonists models, and to identify several outliers in agonist group that should be related to the existence of two distinct subsites for CB1 agonist binding (4,5).
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- 2009
19. Chemical probes for the recognition of cannabinoid receptors in native systems
- Author
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Ministerio de Economía y Competitividad (España), Comunidad de Madrid, Martín-Couce, L., Martín-Fontecha, Mar, Palomares, O., Mestre, Leyre, Cordomí, Arnau, Hernangómez-Herrero, Miriam, Palma, S., Pardo, L., Guaza, Carmen, López-Rodríguez, María L., Ortega-Gutiérrez, S., Ministerio de Economía y Competitividad (España), Comunidad de Madrid, Martín-Couce, L., Martín-Fontecha, Mar, Palomares, O., Mestre, Leyre, Cordomí, Arnau, Hernangómez-Herrero, Miriam, Palma, S., Pardo, L., Guaza, Carmen, López-Rodríguez, María L., and Ortega-Gutiérrez, S.
- Abstract
Receptors made visible: The described biotin-tagged small-molecule probes with excellent affinities for the CB 1 and CB 2 cannabinoid receptors (CB 1R and CB 2R) enable direct visualization of these receptors in native cellular systems, including neurons (see picture), microglia, and immune cells. This method could overcome some of the limitations of current methodologies and may help to dissect the complexity of the endogenous cannabinoid system. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
- Published
- 2012
20. A computational study of cannabinoid receptors and cannabinoid ligands
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Fatima Sapundzhi, Dzimbova, T., and Sapundzhi, Fatima
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Cannabinoid ligands ,Cannabinoid receptors-CB1 ,CB2 ,Computer modelling ,Molecular docking ,Scoring functions - Abstract
The endocannabinoid system consists of endocannabinoids, cannabinoid receptors and enzymes that synthesise and degrade the endocannabinoids. The cannabinoid receptors (CBR) are an important class of receptors participating in various physiological processes. Many of their effects are mediated by two G protein-coupled receptors (GPCRs), (CB1) and (CB2), although additional receptors may be involved. The purpose of this paper is to present a computer modelling of the CBR and several known cannabinoid ligands aiming to determine the structure-activity relationship by using molecular docking with GOLD software. Four scoring functions provided by GOLD are used for molecular docking of the models of CBR1, its crystal structure and the known cannabinoid ligands. Significant correlations between the biological activity of the ligands and the ChemScore optimization function are established. The results obtained could be further used for in silico experiments of the interaction between CBR and cannabinoid ligands.
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