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The potential for genetic contamination of stocks arising from translocation and subsequent release or escape of translocated and/or genetically mixed stocks may be a significant risk to wild populations. In this context, we undertook a population genetic survey of stocks of lumpfish (Cyclopterus lumpus) along the Norwegian coast to establish the existing genetic population structure, which will aid the development of policy of the species’ use as cleaner fish in salmonid aquaculture. This was done by using 14 microsatellite loci and 287 specimens collected at five fishing grounds, covering most of the Norwegian coastline from south to north, with additional 18 samples of first-generation reared fish from a fish farm outside Tromso (North Norway). Overall, there was no indication of significant spatial genetic structuring or of positive correlation between geographic and genetic distance among the wild lumpfish samples. These results suggest that, should translocated individuals escape from aquaculture in Norway, this will probably have little to no impact on the genetic composition of the local fish population.

A set of 13 dinucleotide STR loci (G1A, G10B, G1D, G10L, MU05, MU09, MU10, MU15, MU23, MU26, MU50, MU51, MU59) were selected as candidate markers for a DNA forensic profiling system for Northern European brown bear ( Ursus arctos ). We present results from validation of the markers with respect to their sensitivity, species specificity and performance (precision, heterozygote balance and stutter ratios). All STRs were amplified with 0.6ng template input, and there were no false bear genotypes in the cross-species amplification tests. The validation experiments showed that stutter ratios and heterozygote balance was more pronounced than in the tetranucleotide loci used in human forensics. The elevated ratios of stutter and heterozygote balance at the loci validated indicate that these dinucleotide STRs are not well suited for interpretation of individual genotypes in mixtures. Based on the results from the experimental validations we discuss the challenges related to genotyping dinucleotide STRs in single source samples. Sequence studies of common alleles showed that, in general, the size variation of alleles corresponded with the variation in number of repeats. The samples characterized by sequence analysis may serve as standard DNA samples for inter laboratory calibration. A total of 479 individuals from eight Northern European brown bear populations were analyzed in the 13 candidate STRs. Locus MU26 was excluded as a putative forensic marker after revealing large deviations from expected heterozygosity likely to be caused by null-alleles at this locus. The remaining STRs did not reveal significant deviations from Hardy–Weinberg equilibrium expectations except for loci G10B and MU10 that showed significant deviations in one population each, respectively. There were 9 pairwise locus comparisons that showed significant deviation from linkage equilibrium in one or two out of the eight populations. Substantial genetic differentiation was detected in some of the pairwise population comparisons and the average estimate of population substructure ( F ST ) was 0.09. The average estimate of inbreeding ( F IS ) was 0.005. Accounting for population substructure and inbreeding the total average probability of identity in each of the eight populations was lower than 1.1×10 −9 and the total average probability of sibling identity was lower than 1.3×10 −4 . The magnitude of these measurements indicates that if applying these twelve STRs in a DNA profiling system this would provide individual specific evidence.

The development of wildlife genetics combined with non-invasive sampling might be both an economic benefit for the society and a benefit for the survival of the threatened species. The aims of this study are to develop a quality assured approach for DNA profiling of brown bears ( Ursus arctos ) in Northern Europe using material from non-invasive sampling and to generate a population database that can be used for conservation management as well as a reference database for forensic purposes. Non-invasive sampling was performed by the collection of scats in the field and by using sets of hair traps in a grid pattern in specified geographical areas. Genotypes from 12 STR loci were determined for 232 Norwegian bears. Initial analysis of the entire sample indicated a high level of substructure. Thus, the sample was divided into four geographically different populations consisting of 206 individuals for further validation of the markers. Ten STRs (G1D, G10L, Mu05, Mu09, Mu10, Mu15, Mu23, Mu50, Mu51, and Mu59) conformed to Hardy–Weinberg equilibrium (HWE) expectations with only minor deviations, while the remaining two STR loci (Mu26 and G10B) were excluded from our set of putative forensic profiling system markers after revealing significant deviations from HWE in all four sub-populations. The average estimate of population substructure for Norwegian bears using 10 STRs ( F ST ) was determined to be 0.1, while the estimate for inbreeding ( F IS ) was −0.02. Accounting for the F ST -value, the average probability of identity (PI ave ) was 5.67×10 −10 and the average probability of sibling identity (PI sib ) was 1.68×10 −4 . In Norway, this brown bear DNA profiling system has been applied to forensic casework.