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The local stability and resilience of 13 eco-social keystone species complexes (eco-social KSCs)—considered as conservation and monitoring units—were quantified in coastal marine ecosystems located in the Caribbean and eastern Pacific. Based on Routh–Hurwitz's criterion and Levins' criteria, the eco-social KSCs corresponding to Islas Marietas National Park (Mexico) emerged as the most locally stable and resilient ecosystem. To the contrary, the eco-social KSCs determined for Guala Guala Bay (Chile) and Xcalak Reef National Park (Caribbean) were the least stable and resilient, respectively. In terms of sensitivity, the eco-social KSCs corresponding to El Cobre Bay (Chile) presented the greatest number of sensitive components. The ecological section of the KSCs is formed by a tri-trophic network, dominating self-negative feedbacks. In the case of the socio-economic section, the fisher could exhibit the three types of self-feedbacks, and instead, the demand should be controlled. The identification of eco-social KSCs and the quantification of their stabilities and resiliences allow us to approach ecosystem-based fisheries management under a climate change context. Therefore, we suggest assessing and monitoring the persistence of the eco-social KSCs herein analysed over time, as a way to conserve the fundamental network structure of these ecosystems intervened by fishing. This article is part of the theme issue 'Connected interactions: enriching food web research by spatial and social interactions'. [ABSTRACT FROM AUTHOR]

Background: Coral reefs experience frequent and severe disturbances that can overwhelm their natural resilience. In such cases, ecological restoration is essential for coral reef recovery. Sexual reproduction has been reported to present the simplest and most cost-effective means for coral reef restoration. However, larval settlement and post-settlement survival represent bottlenecks for coral recruitment in sexual reproduction. While bacteria play a significant role in triggering coral metamorphosis and settlement in many coral species, the underlying molecular mechanisms remain largely unknown. In this study, we employed a transcriptome-level analysis to elucidate the intricate interactions between bacteria and coral larvae that are crucial for the settlement process. Results: High Metabacillus indicus strain cB07 inoculation densities resulted in the successful induction of metamorphosis and settlement of coral Pocillopora damicoris larvae. Compared with controls, inoculated coral larvae exhibited a pronounced increase in the abundance of strain cB07 during metamorphosis and settlement, followed by a significant decrease in total lipid contents during the settled stage. The differentially expressed genes (DEGs) during metamorphosis were significantly enriched in amino acid, protein, fatty acid, and glucose related metabolic pathways. In settled coral larvae induced by strain cB07, there was a significant enrichment of DEGs with essential roles in the establishment of a symbiotic relationship between coral larvae and their symbiotic partners. The photosynthetic efficiency of strain cB07 induced primary polyp holobionts was improved compared to those of the negative controls. In addition, coral primary polyps induced by strain cB07 showed significant improvements in energy storage and survival. Conclusions: Our findings revealed that strain cB07 can promote coral larval settlement and enhance post-settlement survival and fitness. Manipulating coral sexual reproduction with strain cB07 can overcome the current recruitment bottleneck. This innovative approach holds promise for future coral reef restoration efforts. [ABSTRACT FROM AUTHOR]

This paper presents a novel implementation of the Coral Reef Optimization with Substrate Layers (CRO‐SL) algorithm. Our approach, which we call TensorCRO, takes advantage of the TensorFlow framework to represent CRO‐SL as a series of tensor operations, allowing it to run on GPU and search for solutions in a faster and more efficient way. We evaluate the performance of the proposed implementation across a wide range of benchmark functions commonly used in optimization research (such as the Rastrigin, Rosenbrock, Ackley, and Griewank functions), and we show that GPU execution leads to considerable speedups when compared to its CPU counterpart. Then, when comparing TensorCRO to other state‐of‐the‐art optimization algorithms (such as the Genetic Algorithm, Simulated Annealing, and Particle Swarm Optimization), the results show that TensorCRO can achieve better convergence rates and solutions than other algorithms within a fixed execution time, given that the fitness functions are also implemented on TensorFlow. Furthermore, we also evaluate the proposed approach in a real‐world problem of optimizing power production in wind farms by selecting the locations of turbines; in every evaluated scenario, TensorCRO outperformed the other meta‐heuristics and achieved solutions close to the best known in the literature. Overall, our implementation of the CRO‐SL algorithm in TensorFlow GPU provides a new, fast, and efficient approach to solving optimization problems, and we believe that the proposed implementation has significant potential to be applied in various domains, such as engineering, finance, and machine learning, where optimization is often used to solve complex problems. Furthermore, we propose that this implementation can be used to optimize models that cannot propagate an error gradient, which is an excellent choice for non‐gradient‐based optimizers. [ABSTRACT FROM AUTHOR]

While historians and anthropologists have thoroughly documented the management of leprosy in Hawai‘i, Cook Islands, Sāmoa, and Fiji, the case of the Établissements français de l’Océanie (now French Polynesia) has remained overlooked. This article focuses on the small atoll of Reao in eastern Tuamotus, where an official leprosarium was set up in the mid-1930s. It looks at the preventive and therapeutic measures taken between 1919 and 1956 and the endemic’s impacts on society. The article shows that the administrative response was slow and hampered by insufficient resources and Reao’s great distance from Tahiti. Also, these circumstances were conducive to the maintenance of the strong influence of Catholic missionaries and of close links between the patients and other Island inhabitants. Lastly, it appears that while the endemic led to the arrival of new goods, customs, and ideas, socio-cultural change remained limited overall. [ABSTRACT FROM AUTHOR]

The structural architecture of coral reefs is a known predictor of species richness, fish biomass and reef resilience. At a smaller scale, three-dimensional (3D) surface area of corals is a fundamental determinant of physical and biological processes. Quantifying the 3D surface area of corals has applications for a broad range of scientific disciplines, including carbonate production estimates, coral predation studies, and assessments of reef growth. Here, we present morphotaxon-specific conversion metrics to estimate total 3D surface area and projected 2D surface area of individual colonies from simple field measurements of colony maximum diameter. Underwater photogrammetry techniques were used to quantify surface area and estimate conversion metrics. Bayesian models showed strong non-linear (power) relationships between colony maximum diameter and both total 3D surface area and projected 2D surface area for 13 out of 15 morphotaxa. This study presents a highly resolved and efficient method for obtaining critical surface area assessments of corals for various applications, including assessments of biotic surface area, tissue biomass, calcification rates, coral demographic rates, and reef restoration monitoring. [ABSTRACT FROM AUTHOR]

Compact bushy and expansive branching Acropora survival rates were compared in an experimental restoration setting. Coral fragments were sourced as corals of opportunity (CoPs) or refragmented from CoPs reared on a floating mid‐water rope nursery. Fragments were attached in single‐species and mixed‐species aggregations to modular substrate stabilization structures (reef stars) on degraded, unconsolidated dead coral rubble slopes in Wakatobi Marine National Park, central Indonesia. In total, 1440 Acropora fragments were outplanted to 96 reef stars across five experimental restoration blocks at 14 m depth. Fragment survival was recorded 40–44 months post‐attachment. Survival had a significant relationship with fragment morphology (p < 0.001) and aggregation type (p < 0.01). Sourcing fragments as CoPs or from the nursery did not have a significant relationship with survival. No significant relationships were found with fragment survival for any interactions between morphology, outplanted aggregation, and source. Survival rates for bushy Acropora were 3.44 times and 5.25 times higher than for expansive species for direct CoP outplants and nursery‐reared corals, respectively. The results demonstrate the potential efficacy of returning complex bushy branching Acropora morphologies to mid‐depth reef slopes previously dominated by the genus, using single‐species aggregations interspersed with mixed‐species aggregations. The study also supports using mid‐water nurseries to create a closed or semi‐closed nursery cycle to scale up restoration, and proposes introducing the term “biomass production system” to distinguish this as a process distinct from other coral nursery approaches. [ABSTRACT FROM AUTHOR]

Johnson, M.E.; Lin, T.-Y., and Su, S.-J., 2024. Comparison of coastal geology and subtropical storms impacting Taiwan and Mexico's Baja California Sur around the Tropic of Cancer in the Pacific basin. Journal of Coastal Research, 40(5), 972–993. Charlotte (North Carolina), ISSN 0749-0208. The Tropic of Cancer at 23°26′22″ arcs across the open Pacific Ocean over nearly 13,000 km between the tip of Mexico's Baja California peninsula and the island of Taiwan off mainland China's coast. Major storms that affect Taiwan's east coast and Gulf of California shores on Mexico's Baja California peninsula are tropical depressions called typhoons in Asia and hurricanes in the Americas. Taiwan is in the path of typhoons that form over the equatorial Pacific to strike east Asia annually. In 2019, Super Typhoon Lekima became the third costliest storm in east Asia, affecting not only Taiwan but also east China and the Ryukyu Islands. Late in the storm season in October 2023, Hurricane Otis became the strongest disturbance on record to strike western Mexico, with winds up to 265 km/h during a Category 5 event. Despite the enormous distance separating them, the tectonically active shores of Taiwan and the Baja California peninsula share foundational bedrock geology dominated by andesite and feature similar patterns of ongoing coastal uplift. This review covers a range of analogous aspects expressed by coastal marine geology, including fossil and modern coral reefs, fossil and modern rhodolith banks, thermal activity in the form of hot springs, and progradation of fossil and modern deltas that emerge from high-elevation drainages. The population density of the Baja California peninsula and the narrow coastal plain of eastern Taiwan is low, but people and infrastructure are affected by storms of increasing intensity under global warming. The two regions represent instructive case studies related by similar geology under comparable factors of oceanic and atmospheric circulation concentrated around the Tropic of Cancer. The two regions also show enormous potential in the development of national parks and geoparks dedicated to the promotion of geoheritage for the benefit of residents and visitors alike. [ABSTRACT FROM AUTHOR]

Bio‐logging has revealed much about high‐latitude seabird migratory strategies, but migratory behaviour in tropical species may differ, with implications for understanding nutrient deposition. Here we use combined light‐level and saltwater immersion loggers to study the year‐round movement behaviour of adult red‐footed boobies Sula sula rubripes from the Chagos Archipelago, tropical Indian Ocean, to assess migratory movements and estimate nutrient deposition rates based on the number of days they spent ashore. Light levels suggest that red‐footed boobies are resident in the Chagos Archipelago year‐round, although there are large latitudinal errors this close to the equator. Immersion data also indicate residency with tracked birds returning to land every one or two days. Spending an average of 79.86 ± 2.80 days and 280.84 ± 2.64 nights per year on land allows us to estimate that the 21 670 pairs of red‐footed boobies deposit 37.34 ± 0.56 tonnes year−1 of guano‐derived nitrogen throughout the archipelago. Our findings have implications for tropical seabird conservation and phylogenetics, as well as for assessing the impact of seabird nutrients on coral reef ecosystems. [ABSTRACT FROM AUTHOR]

The strength and direction of sexual selection can vary among populations. However, spatial variability is rarely explored at the level of the social group. Here we investigate sexual selection and sex roles in the paternally mouthbrooding, socially monogamous, and site-attached pajama cardinalfish, Sphaeramia nematoptera. Females were larger and more aggressive and had a longer dorsal fin filament, indicating reversed sex roles. At the scale of social groups, we show that the Bateman gradient and reproductive variance depend on the sex ratio and size of groups. In small and medium-sized groups with balanced or male-biased sex ratios, Bateman gradients were steeper for females, whereas gradients were equally steep for both sexes in large groups or when the sex ratio was female biased. For both sexes, reproductive variance increased with group size and with a higher male-to-female sex ratio. In S. nematoptera , mating opportunities outside the socially monogamous pair appear to impact sexual selection. We conclude that strength and direction of sexual selection can be masked by social dynamics in group-living species when considering only population and large-scale demographic processes. [ABSTRACT FROM AUTHOR]

Wedgefishes have recently been recognised as one of the most imperilled marine fish families worldwide. However, many knowledge gaps about their biology and ecology hinder conservation efforts. Here we used a combination of acoustic telemetry and acceleration datalogger technology to gain fundamental insights into the fine-scale behaviour, habitat use, size of activity spaces, and residency of adult female bottlenose wedgefish (Rhynchobatus australiae) in the Ningaloo region of northwestern Australia. Acoustic tracking data over one year demonstrated that female bottlenose wedgefish continuously resided in a relatively small area of a productive coral reef lagoon. Acceleration data revealed that bottlenose wedgefish were nocturnal, with time of day having a greater influence on activity than tidal patterns. Bottlenose wedgefish also increased activity with seasonally increasing temperatures. We identified several discrete behavioural signatures in the acceleration data, inferred to correspond to chafing, settling/burying behaviour, foraging behaviour, and escape behaviour, based on their kinematics. Further observations are required to confirm these behaviours with certainty. Additionally, according to datalogger and acoustic data, tagged bottlenose wedgefish rarely inhabited areas greater than 2 m deep. Together, these first insights into behaviour and habitat use of adult female bottlenose wedgefish highlight the importance of nearshore habitats for this species and indicate that they may be highly resident to specific areas. Our findings provide important insight into the conservation of bottlenose wedgefish in northwestern Australia, including potential effectiveness of protected areas and interactions with specific anthropogenic threats such as shoreline development and recreational beach fishing. [ABSTRACT FROM AUTHOR]

Sea hares are cryptic, herbivorous sea slugs present on many coral reefs worldwide. Although they are known to consume high quantities of macroalgae, they are rarely considered or quantified in assessing algal suppression. Their role as algal suppressors is not well understood, therefore this study sought to quantify sea hare herbivory on the abundant red algal genus Laurencia. The sea hares Aplysia dactylomela, Dolabella auricularia and Dolabella sp. were collected and used in herbivory trials in aquaria at Heron Island on the Southern Great Barrier Reef to quantify their rate of consumption. A. dactylomela consumed 76.9 g partially dried weight of Laurencia per 24-h, which was significantly more than the other species, with D. auricularia consuming an average of 22.5 g and Dolabella sp. consuming 37.4 g partially dried weight. Consumption of Laurencia by A. dactylomela increased with body size, with the exception of the smallest animals, which ate up to 12.5 times their body weight. D. auricularia consumed significantly more algae than was lost in control tanks. Although we observed Dolabella sp. feeding on Laurencia, the amount consumed was not significantly different to loss of algae in control tanks. The rate of herbivory on Laurencia by A. dactylomela is comparable or greater than that of more commonly studied reef herbivores such as fishes and urchins, which suggests that they may contribute to algal suppression on coral reefs and further studies are warranted to evaluate their possible role in coral-algal phase shift dynamics. [ABSTRACT FROM AUTHOR]

This paper examines the intrinsic and instrumental value of corals, and coral reefs, from the epistemological perspectives of Western conservation biologists and Pacific coastal fishers. It uses data on local language names ('folk taxonomies') from several language groups to understand the salience, or perceived value, of corals and coral reef fishes for the speakers of those languages. In all of the folk taxonomies examined, there are very few local language names for corals or reef-associated fishes in the most species-rich families (gobies, blennies, damselfishes, and butterflyfishes). This is interesting particularly because one of the primary rationales for Western conservation interest in Indo-Pacific coral reefs is the 'cumulative intrinsic value' of the large number of biological species associated with these ecosystems, irrespective of their other values, including fishery production. The 'weight' of this cumulative intrinsic value underpins a moral mandate for transnational conservation intervention, typically in the form of marine protected areas, most of which impose a short- to medium-term economic cost on people who are already very poor. The related and widely used Western cultural construct of 'iconic' is also investigated. The paper examines various implications of the large differences between Western scientific and Pacific Islander attributions of value to corals and coral reef ecosystems, including in the context of their importance for fishery production and food (or nutrition) security. I also discuss the apparent lack of (a) reflexivity about the social construction of science and (b) curiosity about the environmental knowledge and values of Indo-Pacific coastal fishers, among many in the Western transnational conservation community. [ABSTRACT FROM AUTHOR]

Marine debris significantly impacts coral ecosystems, especially in regions with high biodiversity like the Sempu Island Nature Reserve in Malang, Indonesia. According to the guidelines of ReefCheck and KLHK 2020, this indepth study looked at the types, amounts, and impacts of marine debris on coral health at five different sites close to the Pondokdadap Coastal Fishing Port. This study employs a belt transect method measuring 100 × 5 meters to systematically collect data. The obtained results indicate that cloth refuse is the most substantial form of waste, accounting for 84.65% of the weight of marine waste. The primary locations for this form of waste are areas with high human activity, particularly those near fishing ports. The impact of marine debris on coral reefs depends on its proximity to human activity, as it exhibits a wide range of density and composition. Millepora, a coral species characterized by its branching structure, was the most severely impacted, with damage levels spanning from 12.07% to 48.65%. This indicates its vulnerability to debris accumulation. The study determined the prevalence of a variety of waste categories, with plastic being the most prevalent. The study also focused on other types of inorganic waste, such as packaging, fishing lines, raffia ropes, rubber (flip-flops and tires), fabric, metal (cans and metal cutlery), glass bottles, and other items, primarily in the port area. The density of debris is an important indicator of the environmental pressure exerted on coral ecosystems. Among the examined locations, the Jetty station displayed the highest concentration of inorganic debris, with a density of 0.100 items/m2. In contrast, Watu Meja Station had the lowest density of inorganic waste at 0.008 items/m2, but the highest concentration of organic waste at 0.066 items/m2. This indicates that there is less human impact but more accumulation of natural refuse. This study highlights the pressing necessity for effective marine waste management strategies, particularly near active ports like Pondokdadap, to mitigate the detrimental effects on coral reefs. The health and sustainability of this critical marine ecosystem can be ensured by reducing refuse accumulation through enhanced waste management protocols and community engagement. [ABSTRACT FROM AUTHOR]

While a record-high in situ water temperature of 38.4 °C on July 24, 2023, has been measured from a local site in Florida's Manatee Bay, satellite images revealed more extensive record-high water temperature in South Florida estuaries and the Florida Keys Reef Tract in July 2023 as a response to the 2023 heatwave, with an average sea surface temperature (SST) anomaly of 1.59 °C above the 2003–2022 mean. Long-term annual SST anomalies and long-term SST trend components of the time series both show significant warming trends in these regions between 2003 and 2023 (0.70 °C/decade), which is 67% higher than in the Gulf of Mexico (0.42 °C/decade). Furthermore, the warming trend appears to have accelerated over the past decade. In the context of global warming in the twenty-first century, such a warming trend and response to heatwaves may lead to more heat stress on the precious coral reefs and seagrasses both in and downstream from these already fragile estuaries. [ABSTRACT FROM AUTHOR]

Coral reefs rely heavily on reef fish for their health, yet overfishing has resulted in their decline, leading to an increase in fast-growing algae and changes in reef ecosystems, a phenomenon described as the phase-shift. A clearer understanding of the intricate interplay between herbivorous, their food, and their gut microbiomes could enhance reef health. This study examines the gut microbiome and isotopic markers (δ13C and δ15N) of four key nominally herbivorous reef fish species (Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare) in the Southwestern Atlantic's Abrolhos Reef systems. Approximately 16.8 million 16S rRNA sequences were produced for the four fish species, with an average of 317,047 ± 57,007 per species. Bacteria such as Proteobacteria, Firmicutes, and Cyanobacteria were prevalent in their microbiomes. These fish show unique microbiomes that result from co-diversification, diet, and restricted movement. Coral-associated bacteria (Endozoicomonas, Rhizobia, and Ruegeria) were found in abundance in the gut contents of the parrotfish species Sc. trispinosus and Sp. axillare. These parrotfishes could aid coral health by disseminating such beneficial bacteria across the reef. Meanwhile, Kyphosus sp. predominantly had Pirellulaceae and Rhodobacteraceae. Four fish species had a diet composed of turf components (filamentous Cyanobacteria) and brown algae (Dictyopteris). They also had similar isotopic niches, suggesting they shared food sources. A significant difference was observed between the isotopic signature of fish muscular gut tissue and gut contents, pointing to the role that host genetics and gut microbes play in differentiating fish tissues. [ABSTRACT FROM AUTHOR]

Coral mucus, teeming with organic matter, releases nutrients and microorganisms, affecting element cycling and microbial communities in coral reefs. While terrestrial ecosystems exhibit well‐studied priming effects from root exudates, the influence of mucus in marine environments, particularly in coral reefs, remains underexplored. We hypothesize that coral mucus, through its nutrients and microbes, stimulates the surrounding microorganisms, regulating carbon metabolism and thus contributing to high coral reef productivity. Initially, natural samples (Acropora pruinosa mucus, seawater, and sediment) were collected for metagenomic assessment of microbial communities and functions. Results showed significant differences in microbial diversity, community structures, co‐occurrence modes, and unique functions among mucus, seawater, and sediment. Subsequent laboratory experiments demonstrated mucus's substantial influence on surrounding microorganisms. Analyses, including 16S rRNA sequencing and Eco‐plate results, revealed that mucus regulates microbial composition and activities. Quantitative gene‐chip analysis showed significant increase in the functional genes related to carbon fixation (e.g., the 3‐hydroxypropionate cycle) and degradation (e.g., pectin and hemicellulose hydrolysis) by 55.81% and 65.48%, respectively. Partial least squares path modeling identified mucus nutrients and microbial community composition as key contributors to carbon metabolic potential. This research confirms that mucus acts as a trigger, reshaping microbial profiles around corals and enhancing carbon utilization efficiency, highlighting its essential role in carbon metabolism and the maintenance of high productivity in coral reef ecosystems. [ABSTRACT FROM AUTHOR]

One of the most significant features of the Northwest Atlantic, the Gulf Stream influences high magnitude environmental fluctuations in deep habitats across the South Atlantic Bight. Amid this variability, the Blake Plateau harbors extensive reefs formed by cold‐water corals that were previously assumed to rely on narrow ranges of temperature, currents, and particulate supply. A benthic lander collected near‐bed conditions at the Richardson Reef Complex, a cold‐water reef dominated by the scleractinian Desmophyllum pertusum at 830 m within the path of the Gulf Stream. Specific behavior of the Gulf Stream resulted in recurring environmental patterns at depth. During offshore meanders, deep stream components intruded onto the reef and caused rapid (3.74°C per hour) temperature increases up to 10.8°C (> 5°C above the site mean) and increased chlorophyll. Within 2 d of peak temperatures, intrusions were replaced by strong, turbid upwelling currents that rapidly cooled the site to temperature minima (4.13°C). While considerable environmental variability from the Gulf Stream may otherwise implicate a thermally stressful setting for corals, high‐temperature events were likely mitigated by their short duration (< 37.4 h) and physical coupling with enhanced organic material. This hypothesis was supported by high‐density clustering of D. pertusum occurrences within 50 km around the Gulf Stream's position along the South Atlantic Bight. This suggests that cold‐water corals experiencing environmental variability can be sustained by relationships between food supply, temperature, and currents that vary in strength along stochastic time scales, shedding further light on the niche of cold‐water corals. [ABSTRACT FROM AUTHOR]

The timing of larval production and release of organisms is important in understanding their presence and prevalence in the environment. On the subtropical coral reefs around Okinawa Island, Japan, the reproductive timing of many soft coral species is still largely unknown. In this study, we report the first documentation of in situ external brooding and planulae release of a stoloniferan octocoral observed on the coral reefs of Okinawa Island. We observe external brooding of embryos and developing larvae on the colony surface and the subsequent planulation of some azooxanthellate larvae of Clavularia cf. inflata from two coral reef sites in the northwestern region of Okinawa Island. These observations indicate that this species reproduces concurrently with other zooxanthellate coral reef anthozoans in the summer season. [ABSTRACT FROM AUTHOR]

Introduction: Cold-water coral reefs form complex benthic habitats, supporting thousands of species. The broadscale environmental tolerances of reef-forming species such as Lophelia pertusa are well studied, but small-scale differences between different reef settings have received little attention so far. The controlling factors of thriving cold-water coral reefs and how these habitats differ in terms of framework extent, coral colony morphology, and associated fauna could reveal how these benthic ecosystems formand expand. Information on the natural range of environmental fluctuations could provide a better understanding of the resilience of such ecosystems towards environmental changes. Our study aimed to elaborate small-scale forces on local hydrodynamics and oceanographic parameters at two geographically close but contrasting reef sites in mid-Norway. Methods: We investigated natural fluctuations and the seasonal variability of environmental conditions of an inshore and an offshore Lophelia-dominated reef over an annual cycle by time series monitoring of physical properties by benthic landers and water sampling for biogeochemical variables using CTD casts. Results and discussion: The flow fields at the extensive reef on the offshore Sula Ridge and a bank reef at Nord-Leksa in a fjord-system differed regarding both short-term and seasonal levels. The inshore flow field was strong and tidally driven, whereas the offshore flow field was slower with large seasonal variability. The local flow regimes and the seasonal atmospheric forcing could explain the observed seasonality of the hydrographic variables and the observed inter-annual variability in biogeochemical variables. Comparison with a flow model showed that the natural short-term and seasonal variability are driven by small-scale forcing that is not represented in model analyses. These results suggest that local hydrodynamics together with sea-floor topography control the reef extent and the morphology of cold-water coral colonies. [ABSTRACT FROM AUTHOR]

Coral reefs are biodiverse marine ecosystems that are undergoing rapid changes, making monitoring vital as we seek to manage and mitigate stressors. Healthy reef soundscapes are rich with sounds, enabling passive acoustic recording and soundscape analyses to emerge as cost-effective, long-term methods for monitoring reef communities. Yet most biological reef sounds have not been identified or described, limiting the effectiveness of acoustic monitoring for diversity assessments. Machine learning offers a solution to scale such analyses but has yet to be successfully applied to characterize the diversity of reef fish sounds. Here we sought to characterize and categorize coral reef fish sounds using unsupervised machine learning methods. Pulsed fish and invertebrate sounds from 480 min of data sampled across 10 days over a 2-month period on a US Virgin Islands reef were manually identified and extracted, then grouped into acoustically similar clusters using unsupervised clustering based on acoustic features. The defining characteristics of these clusters were described and compared to determine the extent of acoustic diversity detected on these reefs. Approximately 55 distinct calls were identified, ranging in centroid frequency from 50 Hz to 1,300 Hz. Within this range, two main sub-bands containing multiple signal types were identified from 100 Hz to 400 Hz and 300 Hz-700 Hz, with a variety of signals outside these two main bands. These methods may be used to seek out acoustic diversity across additional marine habitats. The signals described here, though taken from a limited dataset, speak to the diversity of sounds produced on coral reefs and suggest that there might be more acoustic niche differentiation within soniferous fish communities than has been previously recognized. [ABSTRACT FROM AUTHOR]

AbstractThe construction of an island airport on a coral reef will inevitably encounter wave, tidal and aircraft takeoff and landing loads. To study the dynamic response of the coral sand island airport under these loads, a 1:50 laboratory model test was conducted with Meiji Reef Airport as the engineering background. The model test studied the pore water pressure characteristics of the coral sand strata beneath the airport runway under wave loads with different wave heights, tidal loads with different tidal heights, and aircraft impact loads with different cyclic loading times. Additionally, the displacement characteristics of the coral sand strata beneath the airport runway under the aircraft impact loads with different cyclic loading times were also studied. The results show that the pore water pressure of coral sand strata under the airport runway decreases with the increasing offshore distance under the wave and tidal loads. The change of wave height has little influence on the pore water pressure of coral sand strata, while the change of tidal water level has a significant effect on it. As the number of aircraft impact load cycles increases, the cumulative excess pore pressure in the coral sand strata under the airport runway no longer increases and plastic deformation occurs. The research can provide a reference for the runway foundation treatment of the island airport under construction and planning. [ABSTRACT FROM AUTHOR]

ABSTRACT The warm Miocene (23.0–5.3 Ma) is considered a model case for the global climate of the near future. In view of the current coral reef crisis, studies on Miocene reefs can contribute to predictions regarding the stress resilience of today's reefs against global warming. A Late Miocene (6.2–5.5 Ma) reef coral fauna from Hispaniola Island (Caribbean) characterised by ecologically tolerant taxa was originally interpreted to reflect cool‐eutrophic waters. However, the associated planktonic foraminifer assemblage and new TEX86H–based temperature reconstructions document an oligotrophic shallow‐water environment harbouring 30–31°C. Thus, in conjunction with unusually low vertical growth rates and erratic trace element signatures of massive reef corals, the coral fauna documents critically high temperatures and a response to heat stress rather than cool upwelling. The findings demonstrate the relevance of understanding shallow‐water ecosystems from past warm periods for developing scenarios of a future, warmer world. [ABSTRACT FROM AUTHOR]

In the Caribbean, reef-building scleractinian corals have declined precipitously and octocorals have emerged as one of their main successors. The success of octocorals and the formation of octocoral forests has been attributed to their continuing recruitment to reef habitats, as well as tolerance to pollution, reduced direct competition with scleractinians, and resistance and resilience to climatic events. Benthic grazers on coral reefs can facilitate the growth and recruitment of corals by reducing the abundance of competitive algal turfs and macroalgae. However, grazing can also hinder corals through sublethal damage to coral tissue and predation of recruits. We assessed the effects of grazing by fishes and the sea urchin Diadema antillarum as well as predation by mesofauna on octocoral recruitment through a series of manipulative in situ and ex situ experiments. Exposure to fish and urchin grazing significantly reduced the post-settlement survival of octocoral recruits, while turf-associated mesofauna did not significantly affect recruitment. We also found a positive relationship between octocoral recruitment and the abundance of turf algae, which may reflect the deleterious effect of grazing on both turf algae and octocoral recruits. These data suggest that grazers and predators mediate the bottleneck characteristic of recruitment, primarily through their effect on post-settlement survival. Thus, the declines in the abundance of grazing fishes and urchins throughout the Caribbean may have contributed to the increase in Caribbean octocoral abundance, concurrent with the loss of scleractinians. [ABSTRACT FROM AUTHOR]

The future survival of coral reefs in the Anthropocene depends on the capacity of corals to adapt as oceans warm and extreme weather events become more frequent. Targeted interventions designed to assist evolutionary processes in corals require a comprehensive understanding of the distribution and structure of standing variation, however, efforts to map genomic variation in corals have so far focussed almost exclusively on SNPs, overlooking structural variants that have been shown to drive adaptive processes in other taxa. Here, we show that the reef‐building coral, Acropora kenti, harbours at least five large, highly polymorphic structural variants, all of which exhibit signatures of strongly suppressed recombination in heterokaryotypes, a feature commonly associated with chromosomal inversions. Based on their high minor allele frequency, uniform distribution across habitats and elevated genetic load, we propose that these inversions in A. kenti are likely to be under balancing selection. An excess of SNPs with high impact on protein‐coding genes within these loci elevates their importance both as potential targets for adaptive selection and as contributors to genetic decline if coral populations become fragmented or inbred in future. [ABSTRACT FROM AUTHOR]

Introduction: In recent decades, Caribbean coral reefs have lost many vital marine species due to diseases. The well-documented mass mortality event of the long-spined black sea urchin Diadema antillarum in the early 1980s stands out among these collapses. This die-off killed over 90% of D. antillarum changing the reefscape from coral to algal-dominated. Nearly 40 years later, D. antillarum populations have yet to recover. In early 2022, a new mortality event of D. antillarum was reported along the Caribbean, including Puerto Rico. Methods: This study identifies the gut microbiota changes associated with the D. antillarum during this mortality event. It contrasts them with the bacterial composition of gut samples from healthy individuals collected in 2019 by using 16S rRNA sequencing analyses. Results: Notably, the die-off group's core microbiome resembled bacteria commonly found in the human skin and gut, suggesting potential anthropogenic contamination and wastewater pollution as contributing factors to the 2022 dysbiosis. The animals collected in 2022, especially those with signs of disease, lacked keystone taxa normally found in Diadema including Photobacterium and Propionigenium. Discussion: The association between human microbes and disease stages in the long-spined urchin D. antillarum, especially in relation to anthropogenic contamination, highlights a complex interplay between environmental stressors and marine health. While these microbes might not be the direct cause of death in this species of sea urchins, their presence and proliferation can indicate underlying issues, such as immune depletion due to pollution, habitat destruction, or climate change, that ultimately compromise the health of these marine organisms. [ABSTRACT FROM AUTHOR]

Societal Impact Statement Summary Seagrass meadows are a globally important habitat subject to significant loss. As efforts to restore these sensitive habitats are hampered by their high cost and low levels of reliability, rigorous guidance is required to improve effectiveness and ensure they are cost‐effective. Here, we define 10 golden rules for how we can undertake seagrass restoration. We do this by considering that for seagrass restoration to be successful, it needs to take place with people and not against people. The framework we present aims to direct efforts for seagrass restoration that are holistic and achieve broad goals for people, biodiversity and the planet.The world has lost a significant proportion of its seagrass, and although glimmers of hope for its recovery exist, losses and degradations continue. First and foremost, evidence highlights the need to put the world on a global pathway to seagrass net gain. Achieving this outcome requires that conservation of what remains is a priority, but reaching net gain requires seagrass coverage to increase at rates unlikely to be achieved naturally; large‐scale active restoration is required to fill this gap. Novel finance mechanisms aligned to the climate emergency and biodiversity crises are increasingly leading to larger scale restoration projects. However, no clear framework exists for developing or prioritising approaches. With seagrass restoration expensive and unreliable, rigorous guidance is required to improve effectiveness and ensure it is cost‐effective. Building on evidence from terrestrial and marine sources, here, we apply the ‘10 golden rules’ concept, first outlined for reforestation and later applied to coral reefs, to seagrass restoration. In doing so, we follow international standards for ecological restoration and view seagrass restoration in a broad context, whereby regeneration can be achieved either by planting or by enhancing and facilitating natural recovery. These rules somewhat differ from those on reforestation and coral reef restoration, principally due to the relative immaturity of seagrass restoration science. These 10 golden rules for seagrass restoration are placed within a coupled social‐ecological systems context, and we present a framework for conservation more broadly, to achieve multiple goals pertaining to people, biodiversity and the planet. [ABSTRACT FROM AUTHOR]

Low–lying coral islands are susceptible to rising sea levels and climate change, posing risks to island habitability over the next century. The decadal timescale evolution of the islands can provide an understanding of the governing controls of change and island response. This study investigates variations in the shoreline morphology of the Lakshadweep coral islands (Northern Indian Ocean/Arabian Sea) using satellite datasets (2003–2022; CNES/Airbus;0.3m – 0.7m resolution) and sedimentological data. Of the thirty islands (ten inhabited), six islands (Bangaram, Thinnakara, Suheli, Minicoy, Androth and Bitra) have been studied. Most of these islands are less than 1 km² in size except Androth and Minicoy (>4 km² ). While the data is discontinuous for the islands due to cloud obscuring, the shoreline morphology depicts variations for all the islands’ studied, irrespective of habitation and size. Larger islands have undergone consistent erosion since 2007 (total land loss is approximately 3 - 5% cumulatively). Smaller islands have undergone lateral migration, with sediment erosion usually along the southern edge and sediment migration and accumulation northwards, however, overall, their size remains consistently stable. The migration of sediments is observed only from 2007–2017, which coincides with severe El–Nino Southern Oscillation (ENSO) and low amplitude positive Indian Ocean Dipole (IOD) events. Furthermore, sedimentological analysis along Bangaram’s (small island) accreting margin reveals unconsolidated bio-detrital grainstones with predominant sand-sized fractions (2 – 0.25mm). Corals (43%), molluscs (33%), forams (13%), and algae (8%) are the major sediment producers (with 3% unidentified bioclasts). The ongoing climate warming and ocean acidification will influence the carbonate sediment budget in addition to the changing hydrodynamics owing to monsoons, cyclones, and coupled ocean-atmospheric regional phenomenon, altering the sediment production, transport and accumulation on these islands. Furthermore, rising sea levels and consequent erosion by wave action might lead to rapid drowning in the next few centuries. Our study identifies the current status of the island size variability in the Lakshadweep Archipelago and how site-specific and global factors influence them, thus providing insights into assessing the habitability within these low-lying coral islands. [ABSTRACT FROM AUTHOR]

The high demand for information on how coral reefs are changing often exceeds the capacity of the scientific community to deliver the data necessary to meet this need. However, given the degraded state of coral reefs and the poor prognosis for their recovery, it is reasonable to ask whether coral reef monitoring should continue. Using my experiences from a 37-year study in the US Virgin Islands, I highlight the information that monitoring conveys on the changing state of coral reefs, and underscore how the interpretation of ecological trends matures with increasing longevity of records. Because the past is an imperfect predictor of the future, monitoring coral reefs remains an important endeavor. It offers the only opportunity to understand how reefs will continue to change, to connect patterns of change to the processes causing them to occur, and to create opportunities for management to best ensure their future. [ABSTRACT FROM AUTHOR]

Throughout the world, anthropogenic pressure on natural ecosystems is intensifying, notably through urbanisation, economic development, and tourism. Coral reefs have become exposed to stressors related to tourism. To reveal the impact of human activities on fish communities, we used COVID-19-related social restrictions in 2021. In French Polynesia, from February to December 2021, there was a series of restrictions on local activities and international tourism. We assessed the response of fish populations in terms of changes in the species richness and density of fish in the lagoon of Bora-Bora (French Polynesia). We selected sites with varying human pressures—some dedicated to tourism activities, others affected by boat traffic, and control sites with little human presence. Underwater visual surveys demonstrated that fish density and richness differed spatially and temporally. They were lowest on sites affected by boat traffic regardless of pandemic-related restrictions, and when activities were authorised; they were highest during lockdowns. Adult fish density increased threefold on sites usually affected by boat traffic during lockdowns and increased 2.7-fold on eco-tourism sites during international travel bans. Human activities are major drivers of fish density and species richness spatially across the lagoon of Bora-Bora but also temporally across pandemic-related restrictions, with dynamic responses to different restrictions. These results highlight the opportunity provided by pauses in human activities to assess their impact on the environment and confirm the need for sustainable lagoon management in Bora-Bora and similar coral reef settings affected by tourism and boat traffic. [ABSTRACT FROM AUTHOR]

As global heating and other anthropogenic influences alter tropical marine environments, it is unclear how marine bird populations will be impacted and whether their current roles in tropical marine ecosystems will change. Although marine birds roost and breed on tropical islands in large numbers, the direct trophic interactions between these birds and their prey across the tropics are poorly documented. We present a first framework for evaluating the dependence on and contributions of marine birds to tropical coral reef ecosystems and use it to examine the evidence for different kinds of interaction, focusing primarily on avian diets. We found 34 publications between 1967 and 2023 that presented a total of 111 data sets with enough detail for quantitative dietary analysis of tropical marine birds. Only two bird species out of 37 (5.4%) had diets of >50% coral reef fishes and only one, the Pacific Reef Egret, appeared to depend almost entirely on reef‐based production. Marine birds are also prey for other marine organisms, but insufficient data are available for quantitative analysis. Evidence for indirect effects of birds in tropical marine environments is stronger than for direct dependence on coral reefs, particularly in relation to nutrient concentration and the fertilisation impacts of guano on corals. Dispersal of propagules (e.g. seeds, spores, invertebrate eggs) by bathing, drinking, resting or foraging birds is under‐studied and poorly documented. Although the degradation of coral reefs appears unlikely to have a significant direct impact on food availability for most marine bird populations, indirect effects involving marine birds may be disrupted by global environmental change. [ABSTRACT FROM AUTHOR]

Cyanobacterial mats supplanting coral and spreading coral diseases in tropical reefs, intensified by environmental shifts caused by human‐induced pressures, nutrient enrichment, and global climate change, pose grave risks to the survival of coral ecosystems. In this study, we characterized Okeanomitos corallinicola gen. and sp. nov., a newly discovered toxic marine heterocyte‐forming cyanobacterium isolated from a coral reef ecosystem of the South China Sea. Phylogenetic analysis, based on the 16S rRNA gene and the secondary structure of the 16S–23S rRNA intergenic region, placed this species in a clade distinct from closely related genera, that is, Sphaerospermopsis stricto sensu, Raphidiopsis, and Amphiheterocytum. The O. corallinicola is a marine benthic species lacking gas vesicles, distinguishing it from other members of the Aphanizomenonaceae family. The genome of O. corallinicola is large and exhibits diverse functional capabilities, potentially contributing to the resilience and adaptability of coral reef ecosystems. In vitro assays revealed that O. corallinicola demonstrates notable cytotoxic activity against various cancer cell lines, suggesting its potential as a source of novel anticancer compounds. Furthermore, the identification of residual saxitoxin biosynthesis function in the genome of O. corallinicola, a marine cyanobacteria, supports the theory that saxitoxin genes in cyanobacteria and dinoflagellates may have been horizontally transferred between them or may have originated from a shared ancestor. Overall, the identification and characterization of O. corallinicola provides valuable contributions to cyanobacterial taxonomy, offering novel perspectives on complex interactions within coral reef ecosystems. [ABSTRACT FROM AUTHOR]

Coral reef degradation is a worldwide and growing phenomenon triggering habitat transformation from live to dead coral fragments. Macroinvertebrates play key functions in coral reefs, yet research on the size distribution of their community attributes is limited, particularly in the Eastern Tropical Pacific (ETP). We assessed the size distribution of the macroinvertebrate communities in live and dead corals in an ETP coral reef off Colombia. Live coral supported greater macroinvertebrate biomass than dead corals. In live coral, > 90% of total biomass was allocated in the > 8 mm class, which was mostly represented by trapeziid crabs and alpheid shrimps, both obligate symbionts of Pocillopora colonies. No differences were found in macroinvertebrate densities between substrates. Macroinvertebrate communities were dominated by crustaceans, though not in every size class. In live coral, Decapoda dominated in all size classes except 0.5–1 mm, which was the only class where dominance of a single taxon was not observed. In dead corals, the dominance of crustaceans was only observed in the 0.5–1 mm class due to high abundances of tanaidaceans. The remaining size classes were dominated by Polychaeta (1–2 mm, 2–4 mm) and Ophiuroidea (4–8 mm, > 8 mm). Our findings highlight that coral degradation events could lead to macroinvertebrate assemblages with lower biomass contributions, higher proportions of small crustaceans (< 1 mm), and taxonomic shifts. Such transitions from live to dead corals could likely impact food-web interactions between macroinvertebrates and higher trophic levels, potentially altering the ecosystem services offered by coral reefs. [ABSTRACT FROM AUTHOR]

Coral reef fishes are usually assumed to be most strongly associated with reef-building corals. However, sponges can be a significant structural component of coral reef ecosystems and their framework can enhance the local abundance and biodiversity of fish assemblages. Little is known regarding the range of fish species using complex sponges as either shelter or feeding substrata. Here we use a combination of stationary video cameras and focal animal sampling to document fish species positively associated with complex sponges in Kimbe Bay, Papua New Guinea. Stationary cameras identified 45 fish species using the sponges for either shelter, feeding substrata or as sites for ambush predation. A guild of 10 individual fish species from five families (Blenniidae, Chaetodontidae, Gobiidae, Labridae and Pomacentridae) were observed to quantify sponge and other habitat use and compared with habitat availability to determine the level of sponge selectivity. One species, Pleurosicya elongata (the Slender Spongegoby), lived in obligate association with Ianthella basta (Elephant Ear sponge), and there was a positive relationship between sponge size and number of resident fish, however this was not significant for all life stages. Five other fish species appeared to preferentially select sponges as habitat (Amblyglyphidodon aureus, Chaetodon kleinii, Coradion chrysozonus, Escenius prooculis and Pomacentrus nigromanus), while for others, sponge use appeared incidental. When selectivity indices were calculated for specific sponge species it was apparent that some fishes exhibited preferences for particular sponge species or growth forms. These results suggest more fish species may be reliant on sponges than is widely appreciated. [ABSTRACT FROM AUTHOR]

How can phenotypic plasticity promote or impede adaptive change and diversification? Answering this key question can be experimentally intractable, but closely related clonal species allow a direct approach: experimentally provoking phenotypic plasticity to assess the adaptive significance of both plastic traits and species differences. Two common Caribbean sponge species, Aplysina fulva and A. cauliformis , are nearly indistinguishable molecularly, and share growth form, habitat, and geographical range. This raises questions about species boundaries, within-species variability, and mechanisms of speciation. To distinguish phenotypic plasticity from genetic variation, and learn how plasticity might influence adaptive—and divergent—evolution, I: (i) quantified morphological and ecological characters, (ii) revealed phenotypic plasticity by growing clonemates in different environments, and (iii) related plastic morphological features to ecological function. Characters included skeletal fibre density, biomechanical properties, vulnerability to parasites and predators, wound healing, transport pathways, propagation by fragments, population dynamics, and growth and survival in settings differing in food, sunlight, predators, and water motion. Transplanting both species to a different environment elicited parallel plasticity in the same traits. Combined comparative and experimental data reveal integrated suites of ecologically relevant characters that clearly distinguish these species and allow interpretation of adaptive significance of plastic characters that may underlie divergence. [ABSTRACT FROM AUTHOR]

Monitoring changes in coral reef ecosystems for their conservation and management is important as they are frequently subject to various natural and anthropogenic threats. However, in Sri Lanka, the attention in this regard is to be further concerned for their well‐being. Therefore, this study focused on the selected shallow water (<5 m) coral reefs as Pigeon Island (PIR), Adukkuparu (AR), Salli Beach (SBR), Kayankerni (KR), and Passikuda (PR) on the Eastern coast of Sri Lanka to estimate their changes over 2020, 2021, and 2022. The remote sensing demarcations with the composition of reef ecosystems were done through the analysis of the Allen Coral Atlas data followed by field surveys. Higher accuracy levels for corals were obtained for each site due to field verifying all individual polygons and omitting unmatched polygons of the initial maps from the Allen Coral Atlas. Then, the in‐situ reef surveys were conducted over randomly selected permanent transects at each site. From 2020 to 2022, the live coral percentages have increased in PIR, AR, and SBR while reduced in KR and PR. Dead corals have facilitated the overgrowth of macroalgae. The combined area of live coral on all five reefs has slightly gone up. This increase is primarily due to the rise in live coral cover in AR and SBR. Also, prominent increments of coral diversity have resulted from those sites. Therefore, it is suggested that AR and SBR be designated as Marine Protected Areas to safeguard the newly emerging live corals. [ABSTRACT FROM AUTHOR]

Understanding visitors' willingness to pay (WTP) for natural ecosystems can assist policymakers in managing the environmental assets that form the foundation of nature-based tourism. To earn the highest economic return from limited budgetary resources, tourist-dependent destinations must identify sustainable sources of conservation funding and prioritize spending across ecosystems and initiatives. The purpose of this study is to assess the potential for visitor donations to serve as a source of conservation funding and investigate preferences and willingness to pay for multiple ecosystems concurrently, using data from a stated preference survey administered in Grenada, a small island state in the southern Caribbean that relies on nature-based tourism. Results from a discrete choice experiment and a contingent valuation exercise reveal a reluctance to donate to conservation initiatives by more than half of respondents. Visitors place the highest value on improvements to coral reefs, followed by rainforests, mangroves, and beaches. Average willingness to donate to a conservation trust fund ranged from US $8.00 to US $15.00, and from US $17.00 to US $52.00 for conservation plans targeting improvements to specific ecosystems. Few factors are found to be associated with willingness to pay. Scale heterogeneity may be a more significant source of variation than preference heterogeneity. [ABSTRACT FROM AUTHOR]

Cnidarians are among the most important diploblastic organisms, elucidating many of the early stages of Metazoan evolution. However, Cnidarian fossils from Cambrian deposits have been rarely documented, mainly due to difficulties in identifying early Cnidarian representatives. Halysites, a tabulate coral from Silurian reef systems, serves as a crucial taxon for interpreting Cambrian cnidarians. Traditionally, the biological characteristics of Halysites have been analyzed using methods limited by pretreatment requirements (destructive testing) and the chamber size capacity of relevant analytical instruments. These constraints often lead to irreversible information loss and inadequate data extraction. This means that, to date, there has been no high-resolution three-dimensional mineralization analysis of Halysites. This study aims to introduce novel, non-destructive techniques to analyze the internal structure and chemical composition of Halysites. Furthermore, it seeks to elucidate the relationship between coral organisms and biomineralization in reef settings and to compare Silurian Tabulata with putative Cambrian cnidarians. Techniques such as micro-X-ray fluorescence spectrometry (micro-XRF), micro-X-ray computed tomography (micro-CT), and scanning electron microscopy (SEM) were employed in this research. With the help of high-resolution micro-CT scanning, we identify the growth pattern of Halysites, showing both lateral and vertical development. The lateral multiple-branching growth pattern of Halysites corals is first established herein. The flaggy corallite at the initial stage of branching is also observed. The micro-XRF mapping results reveal the occurrence of septa spines for Halysites, a trait previously thought rare or absent. Additionally, the ratio of coral volume to the surrounding rock was assessed, revealing that Halysites reefs were relatively sparse (volume ratio = ~30%). The cavities between Halysites likely provided more space for other organisms (e.g., rugose corals and bryozoans) when compared to other coral reef types. Additionally, we provide a comparative analysis of post-Cambrian colonial calcareous skeletons, offering insights into the structural features and growth patterns of early skeletal metazoans across the Ediacaran–Cambrian boundary. [ABSTRACT FROM AUTHOR]

Climate‐driven alterations to disturbance regimes are increasingly disrupting patterns of recovery in many biomes. Here, we examine the impact of disturbance and subsequent level of recovery in live hard coral cover on the Great Barrier Reef (GBR) across the last three decades. We demonstrate that a preexisting pattern of infrequent disturbances of limited spatial extent has changed to larger and more frequent disturbances, dominated by marine heatwaves and severe tropical cyclones. We detected an increase in the impact (measured as coral loss) across 265 individual disturbance impacts on 131 reefs in a 36‐year dataset (1985–2022). Additionally, the number of survey reefs impacted by disturbance has increased each decade from 6% in the 1980s to 44% in the 2010s, as has the frequency of mass coral bleaching across the GBR, which has increased between 19% and 28% per year, and cyclones (3%–5% per year), resulting in less time for recovery. Of the 265 disturbance impacts we recorded, complete recovery to the highest levels of coral cover recorded earlier in this study (the "historical benchmark") occurred only 62 (23%) times. Of the 23% of disturbance impacts that resulted in complete recovery to historical benchmarks, 34/62 recovered to their benchmark in 2021 or 2022. Complete recovery was more likely when the historical benchmark was <25% live hard coral cover. The lack of recovery was attributed to recovery time windows becoming shorter due to increases in the frequency of cyclones and of thermal stress events that result in mass coral bleaching episodes. These results confirm that climate change is contributing to ecosystem‐wide changes in the ability of coral reefs to recover. [ABSTRACT FROM AUTHOR]

This article explores the relationship between boring bivalves and their coral hosts in coral reefs. The study conducted field experiments comparing the physiological parameters of Leiosolenus simplex bivalves living in live coral hosts and in corals stripped of their live tissue. Surprisingly, the survival rate and diet composition of the bivalves in both types of hosts were similar, but other indicators of physiological condition, such as pumping rate and oxygen consumption, were lower in bivalves residing in dead coral hosts. The study suggests that while bivalves can survive in dead coral hosts, live coral hosts provide greater food supply and enhance their physiological state. [Extracted from the article]

This article discusses the interactions among three nonindigenous coral species in a tropical marine fouling community. The study focuses on the Tubastraea species, which are invasive corals originally from the tropical Indo-Pacific. The researchers found that these invasive corals can coexist and interact with each other without causing harm. They also observed fusion between colonies of different Tubastraea species, creating chimeric colonies. The study highlights the importance of understanding the interactions between invasive and native species in marine ecosystems. [Extracted from the article]

Biome degradation characterizes the Anthropocene Epoch, and modern ecology is deeply involved with describing the changes underway. Most research has focused on the role of acute disturbances in causing conspicuous changes in ecosystem structure, which leads to an underappreciation of the chronic effects causing large changes through the cumulative effects of small perturbations over decades. Coral reefs epitomize this trend, because the changes in community structure are profound, yet the data to quantify these effects are usually insufficient to evaluate the relative roles of different disturbance types. Here, four decades of surveys from two coral reefs (9 and 14 m depth) off St. John, US Virgin Islands, are used to quantify the associations of acute and chronic events with the changes in benthic community structure. These reefs profoundly changed over 36 years, with coral death altering species assemblages to depress abundances of the ecologically important coral Orbicella spp. and elevating the coverage of macroalgae and crustose coralline algae/turf/bare space (CTB). Linear mixed models revealed the prominent role of chronic variation in temperature in accounting for changes in coverage of corals, macroalgae, and CTB, with rising temperature associated with increases in coral cover on the deep reef, and declines on the shallow reef. Hurricanes were also associated with declines in coral cover on the shallow reef, and increases on the deep reef. Multivariate analyses revealed strong associations between community structure and temperature, but weaker associations with hurricanes, bleaching, and diseases. These results highlight the overwhelming importance of chronically increasing temperature in altering the benthic community structure of Caribbean reefs. [ABSTRACT FROM AUTHOR]

In the 20th century, Australia's Great Barrier Reef emerged as a political battleground when governing bodies planned to turn its coral territories into a vast mining zone. But in the 21st century, as the temporalisation of the Reef exerts increasing influence on the governance, securitisation and anticipation of planetary futures, coral time has emerged as a new site of political and imaginative conflict. Responding to this shift from territory to temporality, how can we pay closer attention to those skilfully making coral time? In this article, I introduce 'dimensional friction' as a tool for considering how the temporal structure of corals intersects with the temporal structure of global climate science in a coring laboratory. Based on my fieldwork at the Australian Institute of Marine Science, I analyse simultaneously discursive, technical, and imaginative problems that emerge when scientists transform the mineral skeletons of corals into time data. Dimensional friction appears whenever this skeletal matter is manipulated, surfacing the lab-based production of vertical time-depth but also suggesting other ways of temporalising (and corporally appropriating) coral time. Viewed in this way, coral cores might be better understood as 'temporal volumes' rather than chronostratigraphic records amenable to linear timelines and trajectories. [ABSTRACT FROM AUTHOR]

Simple Summary: In marine coral reef ecosystems, anemonefish are a group with highly complex behavioral patterns and strict social hierarchies. However, there has been a paucity of research on the factors associated with stable hierarchical relationships or the behaviors performed during competitive interactions, especially in anemonefish in the growth phase before sexual differentiation. In the present study, we employed an observational approach to assess the personality type of each individual by observing the interactive behavior between unsexually differentiated Amphiprion clarkii. Our findings revealed that the personality of A. clarkii varied significantly between individuals, with two main types. Furthermore, our pairing experiments confirmed the impact of personality on the establishment of a stable social hierarchy. These personality-related behavioral traits are potentially important for both individual and population survival, and extend our understanding of the establishment and evolution of social hierarchies in anemonefish and their impact on population dispersal. Furthermore, they have the potential to guide aquaculture practices. In this study, the behavioral ethogram of Amphiprion clarkii during the growth phase prior to sexual differentiation was summarized based on behavioral observations in three social environments. These behaviors can be classified into four categories: in addition to normal behaviors, the other three categories of behaviors—threatening, agonistic, and appeasing behaviors—represent different intentions in interactions with other individuals. Subsequently, the personalities of each individual were assessed by testing their reactions to intruders. These individuals mainly exhibited two distinct personality types: bold-aggressive and shy-submissive. In pairing experiments, the interactive behaviors of the anemonefish were observed in pairing combinations of different body sizes and personalities. The impact of personality on the establishment of a stable social hierarchy was confirmed by significant differences in the success rates of different pairing combinations, with the frequency of appeasing behaviors being the main factor influencing the success rate. Our results suggested that in natural waters, when juvenile individuals migrate among host anemones, shy-submissive individuals are more likely to be accepted due to their appeasing behaviors towards larger individuals, thus avoiding the risk of being attacked and bitten, and benefiting the survival of the individual. Conversely, bold-aggressive individuals are more likely to be driven away to another host anemone due to their unwillingness to settle for a lower-ranked status, thereby contributing to population dispersal and increasing opportunities for gene exchange between populations. [ABSTRACT FROM AUTHOR]

Stony coral tissue loss disease (SCTLD) has devastated coral reefs off the coast of Florida and continues to spread throughout the Caribbean. Although a number of bacterial taxa have consistently been associated with SCTLD, no pathogen has been definitively implicated in the etiology of SCTLD. Previous studies have predominantly focused on the prokaryotic community through 16S rRNA sequencing of healthy and affected tissues. Here, we provide a different analytical approach by applying a bioinformatics pipeline to publicly available metagenomic sequencing samples of SCTLD lesions and healthy tissues from 4 stony coral species. To compensate for the lack of coral reference genomes, we used data from apparently healthy coral samples to approximate a host genome and healthy microbiome reference. These reads were then used as a reference to which we matched and removed reads from diseased lesion tissue samples, and the remaining reads associated only with disease lesions were taxonomically classified at the DNA and protein levels. For DNA classifications, we used a pathogen identification protocol originally designed to identify pathogens in human tissue samples, and for protein classifications, we used a fast protein sequence aligner. To assess the utility of our pipeline, a species-level analysis of a candidate genus, Vibrio , was used to demonstrate the pipeline's effectiveness. Our approach revealed both complementary and unique coral microbiome members compared with a prior metagenome analysis of the same dataset. [ABSTRACT FROM AUTHOR]

The future of marine ecosystems is at risk due to climate change and other human impacts. Specifically, due to ocean warming, some tropical species are expanding their populations while populations of temperate species are in regression, making the establishment of conservation measures imperative to maintain local biodiversity. In this study we establish a baseline on the distribution and abundance of the temperate coral Balanophyllia regia from the Canary Islands. We found that the main environmental factors determining B. regia's distribution and abundance were sea surface temperature and hydrodynamic conditions. Areas under large wave action and colder environments enhanced this warm-temperate species' development. Since its metabolic performance depends exclusively on the surrounding environment, we also propose a methodology to potentially monitor climate change on coastal habitats through this azooxanthellate calcified coral. Results of a tagging experiment showed that a concentration of 20 mg/mL of calcein during 6 h might be enough to in situ label polyps of B. regia without compromising corallite survival. Long-term monitoring of population abundances and growth rates of B. regia through calcein tagging will allow us to identify alterations in local ecosystems early and focus future conservation investments on the most vulnerable areas with higher ecological and economic value. [ABSTRACT FROM AUTHOR]

The northeastern Red Sea (Saudi Arabia) is currently being transformed to become a global hub of economic activity and tourism. This transformation requires the development of pristine coastal areas into populated and dynamic settlements. At the same time, the northern Red Sea is considered a climate refuge for corals in changing climate conditions, and efforts to preserve and protect marine biodiversity are being proposed. Accordingly, foraminifers are an efficient tool to assess and monitor their associated coral reefs' health. This study reports a modern-day health assessment of the corals of Shushah Island (Saudi Arabia) in the northeastern Red Sea as a reference for future monitoring as inferred by applying the FoRAM Index method. In general, our results revealed healthy conditions conducive to coral growth, yet some precautions and regular assessments are recommended. [ABSTRACT FROM AUTHOR]

Climate change stressors are progressively simplifying biogenic habitats in the terrestrial and marine realms, and consequently altering the structure of associated species communities.Here, we used a volcanic CO2 seep in Papua New Guinea to test in situ if altered reef architecture due to ocean acidification reshuffles associated fish assemblages.We observed replacement of branching corals by massive corals at the seep, with simplified coral architectural complexity driving abundance declines between 60% and 86% for an assemblage of damselfishes associated with branching corals. An experimental test of habitat preference for a focal species indicated that acidification does not directly affect habitat selection behaviour, with changes in habitat structural complexity consequently appearing to be the stronger driver of assemblage reshuffling. Habitat health affected anti‐predator behaviour, with P. moluccensis becoming less bold on dead branching corals relative to live branching corals, irrespective of ocean acidification.We conclude that coral reef fish assemblages are likely to be more sensitive to changes in habitat structure induced by increasing pCO2 than any direct effects on behaviour, indicating that changes in coral architecture and live cover may act as important mediators of reef fish community structures in a future ocean. [ABSTRACT FROM AUTHOR]

Coral reef limestone is a biogenic limestone with a hyperdeveloped pore structure. The complex structural features of coral reef limestone can directly affect its mechanical and seepage characteristics, which are not yet well-understood. The pore structure information of two coral reef limestone specimens, including one with coarse pores (CR-C) and one with fine pores (CR-F), was obtained by combining CT scanning technology, 3D visualization reconstruction, and pore identification algorithms. The pore structure characteristics were interpreted considering the porosity's spatial variability, fractal dimension, and tensorial anisotropy. A seepage tensor derived from the geometry component of Hagen-Poiseuille's law was proposed to assess the seepage anisotropy, which was then verified through seepage simulations along different directions. It was found that the spatial distribution of the porosity of CR-C was less uniform than that of CR-F. Both testing specimens had distinct pore structures with obvious directionality that varied with sampling size. Seepage simulations on a representative elementary volume (REV) of CR-C revealed that the permeability along the identified dominant seepage direction was indeed the largest. Some empirical correlations between the permeability and the deviation angle from the dominant seepage direction were established. This study highlights the importance of considering structural anisotropy when interpreting the properties of coral reef limestone. [ABSTRACT FROM AUTHOR]

Marine heatwaves (MHWs), increasing in duration and intensity because of climate change, are now a major threat to marine life and can have lasting effects on the structure and function of ecosystems. However, the responses of marine taxa and ecosystems to MHWs can be highly variable, making predicting and interpreting biological outcomes a challenge. Here, we review how biological responses to MHWs, from individuals to ecosystems, are mediated by fine‐scale spatial variability in the coastal marine environment (hereafter, local gradients). Viewing observed responses through a lens of ecological theory, we present a simple framework of three 'resilience processes' (RPs) by which local gradients can influence the responses of marine taxa to MHWs. Local gradients (1) influence the amount of stress directly experienced by individuals, (2) facilitate local adaptation and acclimatization of individuals and populations, and (3) shape community composition which then influences responses to MHWs. We then synthesize known examples of fine‐scale gradients that have affected responses of benthic foundation species to MHWs, including kelp forests, coral reefs, and seagrass meadows and link these varying responses to the RPs. We present a series of case studies from various marine ecosystems to illustrate the differential impacts of MHWs mediated by gradients in both temperature and other co‐occurring drivers. In many cases, these gradients had large effect sizes with several examples of local gradients causing a 10‐fold difference in impacts or more (e.g., survival, coverage). This review highlights the need for high‐resolution environmental data to accurately predict and manage the consequences of MHWs in the context of ongoing climate change. While current tools may capture some of these gradients already, we advocate for enhanced monitoring and finer scale integration of local environmental heterogeneity into climate models. This will be essential for developing effective conservation strategies and mitigating future marine biodiversity loss. [ABSTRACT FROM AUTHOR]

Island species-area relationship (ISAR) is the most documented pattern in island biogeography. Different hypotheses were advanced to explain this pattern. In this study, I selected 27 remote Tuamotu atolls in the South Pacific Ocean with complete surveys of native species richness of birds and vascular plants to test the influence of four abiotic predictors on species richness (atoll emerged area, habitat diversity, mean elevation, and number of islets). Linear regressions were used to assess the relative influence of predictors on native species richness while stepwise regression was then used to identify the best model. Atoll area was a significant predictor to explain native bird and plant species richness, attesting ISAR on the remote surveyed atolls. Stepwise model demonstrated that both habitat diversity and atoll area explained bird species richness, whereas atoll area and mean elevation were the best predictors for native plants. These results suggest that ISAR can be related to different hypotheses, depending on the taxon studied. Among hypotheses, the simple "target-area" hypothesis was a suitable framework to explain ISAR of native birds, while the "disturbance" hypothesis was relevant to support ISAR of native plants observed on the atolls. [ABSTRACT FROM AUTHOR]