138 results on '"COI barcode"'
Search Results
2. Molecular Identification of Mosquitoes (Diptera: Culicidae) Using COI Barcode and D2 Expansion of 28S Gene.
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Oliveira, Tatiane M. P., Saraiva, José F., da Silva, Herculano, and Sallum, Maria Anice M.
- Subjects
RAIN forests ,RIBOSOMAL RNA ,AEDES ,GENETIC distance ,MOSQUITOES - Abstract
The purpose of this study is to improve the identification of Culicidae species from the Vale Ribeira region, São Paulo state, Brazil. Adults were collected in the municipalities of Cananeia and Pariquera-Açu and morphologically identified. Molecular analyses were performed on sequences of COI barcode and a fragment of the D2 expansion of the 28S ribosomal RNA gene generated from field collected mosquitoes. The analyses included species delimitation, phylogeny, and interspecific genetic distances using the Kimura 2-parameter model. Species included in the analyses were Aedes perventor, Aedes scapularis, Aedes serratus/Aedes nubilus, Aedes serratus s.s., Aedes terrens, Haemagogus capricornii, Haemagogus leucocelaenus, Haemagogus janthinomys, Kerteszia bellatrix, Kerteszia cruzii, Psorophora ferox, Psorophora forceps, Sabethes conditus, and Wyeomyia confusa. COI sequences from specimens collected at other localities were included in the analysis for comparison. Results of barcode RESL analysis showed that specimens of Ps. ferox and Hg. janthinomys split into three clusters for each species. Similarly, sequences of Ke. bellatrix and Ke. cruzii were recovered in two groups for each species. Distinct from other species included in analyses, Ps. ferox and Ps. forceps shared 100% similarity in the D2 fragment sequenced. Overall, the analysis of COI barcode sequences revealed the following key findings: (1) the presence of subclades within Hg. janthinomys, with its division into three groups suggests that this species may represent a species complex; (2) Ke. bellatrix from the Atlantic tropical rainforest shares 95.59% sequence similarity with a specimen from the type locality, indicating that specimens from Southeastern Brazil may belong to an unidentified species within the Ke. bellatrix complex; (3) Ke. cruzii also represents a species complex; and (4) D2 sequences successfully identified most species studied, apart from Ps. forceps and Ps. ferox. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Molecular Identification of Mosquitoes (Diptera: Culicidae) Using COI Barcode and D2 Expansion of 28S Gene
- Author
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Tatiane M. P. Oliveira, José F. Saraiva, Herculano da Silva, and Maria Anice M. Sallum
- Subjects
COI barcode ,D2 rDNA ,Culicidae ,Vale do Ribeira ,Biochemistry ,QD415-436 - Abstract
The purpose of this study is to improve the identification of Culicidae species from the Vale Ribeira region, São Paulo state, Brazil. Adults were collected in the municipalities of Cananeia and Pariquera-Açu and morphologically identified. Molecular analyses were performed on sequences of COI barcode and a fragment of the D2 expansion of the 28S ribosomal RNA gene generated from field collected mosquitoes. The analyses included species delimitation, phylogeny, and interspecific genetic distances using the Kimura 2-parameter model. Species included in the analyses were Aedes perventor, Aedes scapularis, Aedes serratus/Aedes nubilus, Aedes serratus s.s., Aedes terrens, Haemagogus capricornii, Haemagogus leucocelaenus, Haemagogus janthinomys, Kerteszia bellatrix, Kerteszia cruzii, Psorophora ferox, Psorophora forceps, Sabethes conditus, and Wyeomyia confusa. COI sequences from specimens collected at other localities were included in the analysis for comparison. Results of barcode RESL analysis showed that specimens of Ps. ferox and Hg. janthinomys split into three clusters for each species. Similarly, sequences of Ke. bellatrix and Ke. cruzii were recovered in two groups for each species. Distinct from other species included in analyses, Ps. ferox and Ps. forceps shared 100% similarity in the D2 fragment sequenced. Overall, the analysis of COI barcode sequences revealed the following key findings: (1) the presence of subclades within Hg. janthinomys, with its division into three groups suggests that this species may represent a species complex; (2) Ke. bellatrix from the Atlantic tropical rainforest shares 95.59% sequence similarity with a specimen from the type locality, indicating that specimens from Southeastern Brazil may belong to an unidentified species within the Ke. bellatrix complex; (3) Ke. cruzii also represents a species complex; and (4) D2 sequences successfully identified most species studied, apart from Ps. forceps and Ps. ferox.
- Published
- 2024
- Full Text
- View/download PDF
4. MOLECULAR IDENTIFICATION OF ROOT-KNOT NEMATODES MELOIDOGYNE SPP. ISOLATED FROM CUCUMBER FARMS IN DIFFERENT IRAQI REGIONS
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M. R. Abbas, S. M. K. Saadedin, and A. A. Suleiman
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coi barcode ,molecular markers ,mtdna ,nematodes ,Agriculture - Abstract
Meloidogyne spp. is one of the most common crop diseases globally. Due to the similarity in morphological features between various Meloidogyne spp., molecular techniques were used to identify their species. In this study, conducted in October 2022 and January 2023, genetic identification was undertaken on 61 samples collected from nine distinct regions of Iraq. PCR was used to amplify the part of the Meloidogyne spp. genome between the COI and 16S mtDNA genes. Afterward, M. incognita, M. hapla, M. javanica, M. enterolobii, and M. arenaria were genotyped using Sequence Characterized Amplified Region (SCAR-PCR), with decreasing prevalence rates, respectively. The data revealed that the 50 isolates of M. incognita were in the Shuan Kara region, which means they exhibited the highest percentage. Interestingly, M. arenaria was the least common species in all areas and was isolated from Ghanaia. Additionally, M. enterolobii's representation of other species led to the discovery of a new one in Iraq. The coexistence of more than two species within a single region has never been documented. The goal of this study is to use molecular detection to find out how different Meloidogyne species infect cucumber plants and how important it is to be able to spot infected regions.
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- 2024
- Full Text
- View/download PDF
5. Report of a new species of sand fly, Phlebotomus (Anaphlebotomus) ajithii n. sp. (Diptera: Psychodidae), from Western Ghats, India
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Harish Kumar Shah, P. A. Fathima, Jose Jicksy, and Prasanta Saini
- Subjects
Phlebotomus (Anaphlebotomus) ajithii ,Phlebotomine sand flies ,COI barcode ,Western Ghats ,India ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Western Ghats is a biodiversity treasure trove with reports of indigenous leishmaniasis cases. Hence, systematic sand fly surveillance was carried out among the tribal population. The present study reports a novel sand fly species, Phlebotomus (Anaphlebotomus) ajithii n. sp. (Diptera: Psychodidae), discovered in the Western Ghats of India. Methods A comprehensive sand fly survey was conducted across the Kollam, Thrissur, Idukki, Kasaragod and Malappuram districts of Kerala, India. The survey spanned both indoor and outdoor habitats using standard collection methods over a 3-year, 3-month period. DNA barcoding of samples was performed targeting mitochondrial cytochrome c oxidase subunit I (COI) gene, and the sequence generated was subjected to phylogenetic analysis. Results Phlebotomus (Anaphlebotomus) ajithii, a new sand fly species, is recorded and described in this communication. The morphological relationship of the new species to other members of the subgenus Anaphlebotomus is discussed. Mitochondrial COI barcode followed by phylogenetic analysis confirmed that specimens of Ph. ajithii belong to the same taxonomic group, while a genetic distance of 11.7% from congeners established it as a distinct species. Conclusions The Western Ghats, known for its rich biodiversity, has lacked systematic entomological surveys focusing on sand flies. This study aims to fill this gap and reports and describes a new species of sand fly. Graphical abstract
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- 2024
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6. Biodiversity Patterns and DNA Barcode Gap Analysis of COI in Coastal Lagoons of Albania.
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Ismailaj, Mariola, Zangaro, Francesco, Specchia, Valeria, Sangiorgio, Franca, Marcucci, Francesca, Kiçaj, Hajdar, Basset, Alberto, and Pinna, Maurizio
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DNA data banks , *SCIENTIFIC literature , *GENETIC barcoding , *COASTAL biodiversity , *ANIMAL species , *MARINE biodiversity , *AQUATIC biodiversity - Abstract
Simple Summary: High levels of biodiversity characterize the aquatic ecosystems of Albania including coastal lagoons. They are among the most biologically rich and productive environments worldwide. These ecosystems are dynamic, transitioning between land and sea, and they serve as crucial interfaces for various ecological functions and biodiversity requiring specific monitoring programs. The current study represents a pivotal contribution to understanding the biodiversity patterns in the coastal lagoons of Albania. Species data were collected from scientific literature, grey literature, and scientific project reports. These sources about the biodiversity of Albanian lagoons rely upon traditional methods based on morphological species identification. In recent years, new innovative DNA-based methods have been developed to assess aquatic biodiversity. The efficiency of these methods is related to the availability of species "DNA barcodes" in specific international databases. In this study, we focused on the analysis of the extent of records for DNA barcodes in reference libraries, for the aquatic species of Albanian coastal lagoons. Our results reveal an overall gap of 20%, which indicates the concrete possibility of using molecular methods to investigate the marine biodiversity in Albanian lagoons. Aquatic biodiversity includes a variety of unique species, their habitats, and their interactions with each other. Albania has a large hydrographic network including rivers, lakes, wetlands and coastal marine areas, contributing to a high level of aquatic biodiversity. Currently, evaluating aquatic biodiversity relies on morphological species identification methods, but DNA-based taxonomic identification could improve the monitoring and assessment of aquatic ecosystems. This study aims to evaluate the coverage of COI DNA barcodes in the reference libraries for the known aquatic animal species present in the coastal lagoons of Albania. In this study, the six most studied coastal lagoons of Albania were selected. Species data were gathered from the scientific literature and publicly available sites and studies. The collected species lists were taxonomically standardised using global public taxonomic databases like WORMS. The standardised lists were used to analyse the barcode gap of COI based on two public DNA barcode libraries: Barcode of Life Data Systems (BOLD) and NCBI GenBank. The results show that the COI DNA barcode gap in the coastal lagoons of Albania ranges from 7% (Lagoon of Patok) to 33% (Karavasta Lagoon). Fishes and Amphibia represent the groups with the lowest barcode gap (8% each), while Annelida shows the highest (47%). In conclusion, the COI gene marker for DNA-based biodiversity assessments is reliable for the coastal lagoons of Albania. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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7. Integrative systematics of Cheguevaria Kazantsev, 2007 (Coleoptera, Lampyridae, Cheguevariinae) identifies genetic stability in color-polymorphic individuals and a disjoint relationship with Amydetinae.
- Author
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Ferreira, Vinicius S., Keller, Oliver, Barbosa, Felipe Francisco, and Ivie, Michael A.
- Abstract
The genus Cheguevaria (Kazantsev 2007) is currently comprised of three species which are endemic to the Greater Antilles: Cheguevaria angustaKazantsev, 2007 (Hispaniola), Cheguevaria tainoKazantsev, 2007 and Cheguevaria montanaKazantsev, 2008 (both from Puerto Rico). Cheguevaria is the sole member of Cheguevariinae, and a previous morphology-based phylogenetic hypotheses suggested a close relationship with the subfamily Amydetinae. Recent collecting trips to Puerto Rico and the survey of other scientific collections allowed us to identify and locate more specimens of the genus, including several color morphs of specimens tentatively identified as C. montana. We used this material to revise the genus, and to describe Cheguevaria cubensisnew species, the first record of the genus from Cuba. We also produced DNA barcodes based on partial cytochrome c oxidase subunit 1 (COI), which were used to investigate the species limits within color morph species of C. montana. Our results showed a high level of genetic stability in those color morphs, indicating that all specimens belong to the same species. We present a discussion to explain possible scenarios leading to such variation in color patterns. We also generated amplicons for two specimens of Amydetinae, represented by two Amydetes Illiger, 1807 species, and we tested their relationship with Cheguevaria in a phylogenetic context based on a four gene dataset. Our analyzes indicated a disjoint relationship between Cheguevaria and Amydetes, corroborating previously published morphology-based phylogenies, and we maintained the status of Cheguevaria as an independent lineage within Lampyridae. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
8. Report of a new species of sand fly, Phlebotomus (Anaphlebotomus) ajithii n. sp. (Diptera: Psychodidae), from Western Ghats, India.
- Author
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Shah, Harish Kumar, Fathima, P. A., Jicksy, Jose, and Saini, Prasanta
- Subjects
SAND flies ,PHLEBOTOMUS ,PSYCHODIDAE ,CYTOCHROME oxidase ,GENETIC barcoding ,GENETIC distance - Abstract
Background: Western Ghats is a biodiversity treasure trove with reports of indigenous leishmaniasis cases. Hence, systematic sand fly surveillance was carried out among the tribal population. The present study reports a novel sand fly species, Phlebotomus (Anaphlebotomus) ajithii n. sp. (Diptera: Psychodidae), discovered in the Western Ghats of India. Methods: A comprehensive sand fly survey was conducted across the Kollam, Thrissur, Idukki, Kasaragod and Malappuram districts of Kerala, India. The survey spanned both indoor and outdoor habitats using standard collection methods over a 3-year, 3-month period. DNA barcoding of samples was performed targeting mitochondrial cytochrome c oxidase subunit I (COI) gene, and the sequence generated was subjected to phylogenetic analysis. Results: Phlebotomus (Anaphlebotomus) ajithii, a new sand fly species, is recorded and described in this communication. The morphological relationship of the new species to other members of the subgenus Anaphlebotomus is discussed. Mitochondrial COI barcode followed by phylogenetic analysis confirmed that specimens of Ph. ajithii belong to the same taxonomic group, while a genetic distance of 11.7% from congeners established it as a distinct species. Conclusions: The Western Ghats, known for its rich biodiversity, has lacked systematic entomological surveys focusing on sand flies. This study aims to fill this gap and reports and describes a new species of sand fly. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
9. Morphological and molecular description of a new species of sandfly, Sergentomyia (Neophlebotomus) ashwanii sp. nov. (Diptera: Psychodidae) from Western Ghats, India
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Prasanta Saini, Harish Kumar Shah, Mathew Jessu, T Sonia, Tom Anns, and KP Amju
- Subjects
sergentomyia (neophlebotomus) ashwanii ,coi barcode ,western ghats ,phlebotomine sandflies ,Arctic medicine. Tropical medicine ,RC955-962 - Abstract
To report a new species of sandfly, Sergentomyia (Neophlebotomus) ashwanii sp. nov. (Diptera: Psychodidae) from Western Ghats, India. A systematic sandfly survey was conducted in the Thrissur and Kollam districts of Kerala, India using mechanical aspirators, light and sticky traps, both indoor and outdoor habitats, for a period of one year. Deoxyribonucleic acid barcoding of samples was performed targeting mitochondrial cytochrome oxidase I (COI) gene and sequence generated was subjected to phylogenetic analysis. Sergentomyia (Neophlebotomus) ashwanii, a new sandfly species is recorded and described in this communication. A single row of 10-12 pointed teeth in the cibarium with 4-6 small denticles or fore-teeth are the key characteristics that is distinctive from other members of the subgenus Neophlebotomus. Mitochondrial COI barcode followed by phylogenetic analysis of the nucleotide sequence confirms that specimens of the species belong to the same taxonomic group while the genetic distance (14.2%) with the congeners established it to be a different species. The Western Ghats' being an important biodiversity hotspot and has dearth of systematic entomological surveys on sandflies. The current study tried to fill the void and also report a new sandfly species.
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- 2024
- Full Text
- View/download PDF
10. Revisiting the genus Pseudocuneopsis (Bivalvia, Unionidae): Morphology, mitochondrial phylogenomics, and the description of a new species.
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Dai, Yu‐Ting, Chen, Zhong‐Guang, Peng, Ke‐Jia, Ouyang, Shan, Huang, Xiao‐Chen, and Wu, Xiao‐Ping
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BIOLOGICAL classification , *UNIONIDAE , *BIVALVES , *FRESHWATER mussels , *SPECIES , *MOLECULAR phylogeny - Abstract
Species diversity can be underestimated due to a lack of regional studies and limitations in research methods. China is widely recognized as one of the primary hotspots for the biodiversity of freshwater mussels as it harbours a wealth of endemic species. Pseudocuneopsis was recently established to belong to the Unioninae subfamily within Unionidae and is endemic to China. Recent research has expanded the diversity and range of distribution of this genus. However, sufficient data is required to precisely determine the phylogenetic relationships within Pseudocuneopsis. This study conducted an integrative taxonomy using morphological, COI barcode, and complete maternal mitogenome data to clarify the taxonomy of Pseudocuneopsis. Both morphological and COI barcode data supported the validity of all Pseudocuneopsis species. Furthermore, a new species, Pseudocuneopsis yemaoi sp. n. was described from a tributary of the Man River in Hubei, China. Mitochondrial phylogenomic analyses showed that P. yemaoi was closely related to P. sichuanensis and resolved phylogenetic relationship as (P. capitata + (P. yangshuoensis + (P. sichuanensis + P. yemaoi))). Our results highlight the significance of utilizing integrative classification methods. Moreover, we propose enhancing the research and preservation measures of minor streams in China, as these streams may house distinctive species. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
11. Morphological and molecular description of a new species of sandfly, Sergentomyia (Neophlebotomus) ashwanii sp. nov. (Diptera: Psychodidae) from Western Ghats, India.
- Author
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Saini, Prasanta, Shah, Harish Kumar, Jessu, Mathew, Sonia T., Anns, Tom, and Amju, K. P.
- Abstract
Objective: To report a new species of sandfly, Sergentomyia (Neophlebotomus) ashwanii sp. nov. (Diptera: Psychodidae) from Western Ghats, India. Methods: A systematic sandfly survey was conducted in the Thrissur and Kollam districts of Kerala, India using mechanical aspirators, light and sticky traps, both indoor and outdoor habitats, for a period of one year. Deoxyribonucleic acid barcoding of samples was performed targeting mitochondrial cytochrome oxidase I (COI) gene and sequence generated was subjected to phylogenetic analysis. Results: Sergentomyia (Neophlebotomus) ashwanii, a new sandfly species is recorded and described in this communication. A single row of 10-12 pointed teeth in the cibarium with 4-6 small denticles or fore-teeth are the key characteristics that is distinctive from other members of the subgenus Neophlebotomus. Mitochondrial COI barcode followed by phylogenetic analysis of the nucleotide sequence confirms that specimens of the species belong to the same taxonomic group while the genetic distance (14.2%) with the congeners established it to be a different species. Conclusions: The Western Ghats' being an important biodiversity hotspot and has dearth of systematic entomological surveys on sandflies. The current study tried to fill the void and also report a new sandfly species. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
12. Rediscovery after 25 years – first photographic documentation and DNA barcoding of the deep-sea pycnogonid species Ascorhynchus hippos Turpaeva, 1994 (Chelicerata, Pycnogonida, Ascorhynchidae) from the Kuril-Kamchatka Trench
- Author
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Wolf, Lisa, Melzer, Roland, Lehmann, Tobias, and Pensoft Publishers
- Subjects
COI barcode ,Northwest Pacific Ocean ,Sea spiders ,SokhoBio Expedition 2015 - Published
- 2022
13. Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
- Author
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Saskia Bastin, Diana M. Percy, and Felipe Siverio
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Psyllids ,Molecular identification ,Primer efficacy ,Species identification ,COI barcode ,Standard barcode ,Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Objectives DNA Barcoding has proven to be a reliable method for rapid insect identification. The success of this method is based on the amplification of a specific region, the ‘Folmer’ barcode region at the 5´ start of the cytochrome c oxidase 1 gene (cox1), with universal primers. Previous studies showed failures of standard “universal” primers to amplify this region in psyllids. The aim of the study was the design of a new alternative more reliable primer combination for taxa of the superfamily Psylloidea and its comparison with the performance of the standard “universal” Folmer-primers. Results A newly designed degenerate forward primer LCOP-F was developed following comparison of the sequence alignment of the priming site of “universal” primer LCO1490 and the standard insect forward primer LepF1. When combined with the “universal” reverse primer, HCO2198, this new primer pairing was able to generate barcode sequence for all 36 species in 20 genera across the five families of psyllids tested in this study, and these primers were found to be more universally reliable across psyllid taxa than other primer pairs tested.
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- 2023
- Full Text
- View/download PDF
14. A new species and eight new subspecies of high elevation Actinote from Colombia, Ecuador and Peru (Nymphalidae, Heliconiinae, Acraeini).
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Willmott, Keith R., Lamas, Gerardo, Hall, Jason P. W., Boyer, Pierre, Pyrcz, Tomasz, and Florczyk, Klaudia
- Subjects
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FEMALE reproductive organs , *NYMPHALIDAE , *SUBSPECIES , *MORPHOLOGY , *ALTITUDES - Abstract
We describe one new species and eight new subspecies of high elevation Actinote Hübner, [1819] (Nymphalidae, Heliconiinae, Acraeini) from Colombia, Ecuador and Peru: Actinote pyrrhosticta Lamas, Willmott & Hall, n. sp., Actinote pyrrhosticta quintecocha Lamas & Willmott, n. ssp., Actinote pyrrhosticta apurimac Lamas & Willmott, n. ssp., Actinote pyrrhosticta alfamayo Lamas & Willmott, n. ssp., Actinote eresia albesia Lamas & Willmott, n. ssp., Actinote eresia canyaris Pyrcz & Lamas, n. ssp., Actinote hilaris arcoiris Willmott & Hall, n. ssp., Actinote hilaris sourakovi Willmott & Lamas, n. ssp., and Actinote trinacria alegria Boyer & Willmott, n. ssp. We treat Actinote binghamae Dyar, 1913 as a new synonym of Actinote eresia eresina (Hoffer, 1874) n. syn., and treat Altinote santamarta Winhard, 2017 as a subspecies, Actinote trinacria santamarta rev. stat. We illustrate adult specimens of all described taxa of A. pyrrhosticta n. sp., A. eresia (C. Felder & R. Felder, 1862) and A. hilaris Jordan, 1910, and representatives of A. trinacria (C. Felder & R. Felder, 1862). We also provide illustrations of male and female genitalia for select taxa, distribution maps, and a revised, annotated synonymic list for all four species. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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15. Three new species and two new records of the genus Phaenocarpa Foerster (Hymenoptera, Braconidae, Alysiinae) from South Korea
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Sohn, Juhyeong, Achterberg, C. van, Lee, Gyeonghyeon, Kim, Hyojoong, and Pensoft Publishers
- Subjects
COI barcode ,cyclostome ,koinobiont ,natural enemy ,parasitoid wasp ,systematics ,taxonomy - Published
- 2021
16. Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera).
- Author
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Bastin, Saskia, Percy, Diana M., and Siverio, Felipe
- Subjects
APHIDS ,GENETIC barcoding ,DNA primers ,HEMIPTERA ,JUMPING plant-lice ,PERFORMANCE standards ,CYTOCHROME oxidase - Abstract
Objectives: DNA Barcoding has proven to be a reliable method for rapid insect identification. The success of this method is based on the amplification of a specific region, the 'Folmer' barcode region at the 5´ start of the cytochrome c oxidase 1 gene (cox1), with universal primers. Previous studies showed failures of standard "universal" primers to amplify this region in psyllids. The aim of the study was the design of a new alternative more reliable primer combination for taxa of the superfamily Psylloidea and its comparison with the performance of the standard "universal" Folmer-primers. Results: A newly designed degenerate forward primer LCOP-F was developed following comparison of the sequence alignment of the priming site of "universal" primer LCO1490 and the standard insect forward primer LepF1. When combined with the "universal" reverse primer, HCO2198, this new primer pairing was able to generate barcode sequence for all 36 species in 20 genera across the five families of psyllids tested in this study, and these primers were found to be more universally reliable across psyllid taxa than other primer pairs tested. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
17. First record of Megabruchidius tonkineus (Pic, 1904) (Coleoptera: Chrysomelidae, Bruchinae) in Australia.
- Author
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Eow, Lixin, Rako, Lea, Selleck, Caitlin, and Valenzuela, Isabel
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PUBLIC health officers ,BEETLES ,PLANT health ,BOTANICAL gardens ,MEDICAL care ,DIAGNOSTIC services ,CHRYSOMELIDAE ,PHOTOGRAPHS - Abstract
In July 2021, based on a series of photographs posted in the citizen science platform iNaturalist, the Chief Plant Health Officer Unit of Victoria was alerted to a sighting of a suspect exotic chrysomelid from the Royal Botanic Gardens (RBG), East Melbourne, Victoria, Australia. Specimens were collected and forwarded to the Crop Health Services diagnostic laboratory (Agriculture Victoria) for identification. These were identified as Megabruchidius tonkineus (Pic, 1904) (Chrysomelidae: Bruchinae) based on literature, reference specimens and via COI barcoding. This report presents the first record of M. tonkineus, which also represents the first record for the exotic genus Megabruchidius Borowiec, 1984 for Australia. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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18. Review of the European Eumenes Latreille (Hymenoptera, Vespidae) using morphology and DNA barcodes, with an illustrated key to species.
- Author
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van Achterberg, Cornelis, Smit, John T., and Ljubomirov, Toshko
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VESPIDAE , *HYMENOPTERA , *SPECIES , *BAR codes , *DNA , *MORPHOLOGY - Abstract
The European species of the potter wasp genus Eumenes Latreille, 1802 (Vespidae, Eumeninae) are illustrated and a new illustrated key to the 13 recognised species is presented. Eumenes mediterraneus aemilianus Guiglia, 1951 is synonymised with E. papillarius (Christ, 1791) (syn. nov.), E. obscurus André, 1884 and E. andrei Dalla Torre, 1894 with E. pedunculatus (Panzer, 1799) (syn. nov.) and E. crimensis Blüthgen, 1938 with E. sareptanus André, 1884 (syn. nov.). [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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19. Chromosomes as Barcodes: Discovery of a New Species of Black Fly (Diptera: Simuliidae) from California, USA †.
- Author
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Adler, Peter H. and Huang, Shaoming
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PUPAE , *SIMULIIDAE , *CYTOCHROME oxidase , *CHROMOSOMES , *DIPTERA , *BAR codes - Abstract
Simple Summary: The discovery and elucidation of species, especially those that are structurally similar, often require special tools and approaches. The basic principle of a unique barcode, as used in retail stores and more recently as DNA sequences in taxonomy, is also inherent in the giant banded chromosomes of flies (Diptera). We used the sequence of chromosome bands—the barcode—in the discovery of a new species of black fly from California, USA. The chromosomal barcode indicates this species is unique among all others in the Simulium (Boreosimulium) annulus group to which it belongs. To provide an integrated taxonomic approach, we analyzed and described the larvae, pupae, males, and females of this new species and assigned the formal name Simulium ustulatum n. sp. We also provided a traditional DNA barcode using the cytochrome c oxidase I (COI) gene. The new species has the most rearranged chromosomes of all North American members of its species group and differs most conspicuously by having a large chromocenter from which all six chromosome arms radiate. The species is structurally unique in the larva and male. The COI barcode enables identification of the female and pupa, which are structurally similar to other species in the group. The new species is the only western North American member of the Simulium annulus group that inhabits low-elevation, disturbed landscapes. One of the most popular tools for species discovery and resolution is the DNA barcode, typically based on the cytochrome c oxidase I (COI) gene. However, other non-genic barcodes are available for Diptera. The banding sequence of polytene chromosomes in some dipteran cells, particularly of the larval silk glands, can provide a unique species barcode. We used the sequence of bands to reveal a new species of black fly in the Simulium (Boreosimulium) annulus species group from California, USA. To further characterize the species and provide more integrated taxonomy, we morphologically described all life stages above the egg, formally named the species Simulium ustulatum n. sp., and provided a conventional COI barcode. The COI barcode confirmed the chromosomal and morphological evidence that the species is a new member of the S. annulus group, and enabled identification of the larva and female, which are structurally similar to those of other species. The chromosomal barcode shows that this species has the most rearranged complement, compared with the eight other North American members of its species group, with up to 12 times the number of fixed rearrangements. Up to six chromosomal rearrangements, including autosomal polymorphisms and sex-linked phenomena, are shared with other members of the group. The most unique and conspicuous chromosomal feature of this new species is a large, pale-staining chromocenter from which the six chromosomal arms radiate. The distribution of this univoltine species in lowland rivers of California's Central Valley could make it vulnerable, given climate change and increasing land development. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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20. Assessing the Diversity and Systematics of Brachyopini Hoverflies (Diptera: Syrphidae) in the Iberian Peninsula, Including the Descriptions of Two New Species †.
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Ricarte, Antonio, Nedeljković, Zorica, Aguado-Aranda, Pablo, and Marcos-García, Mª Ángeles
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SYRPHIDAE , *CYTOCHROME oxidase , *DIPTERA , *STERNUM , *CLASSIFICATION , *SPECIES , *MALE reproductive organs ,BEETLE anatomy - Abstract
Simple Summary: Hoverflies are a diverse family of insects (6000+ species) providing multiple ecosystem services and direct benefits to society, for example, in pollination and pest control. The extent to which hoverflies can benefit society depends on how well their basics are known, i.e., taxonomy (classification), biology and ecology. Small and inconspicuous hoverflies such as those of the genera Chrysogaster, Melanogaster, Lejogaster, Orthonevra and Riponnensia (tribe Brachyopini) do not usually catch the attention of the general public neither of scientists, and their classification is often poorly known at least in areas of their range. So, the aim of the present work is to gain knowledge in the classification of hoverflies by studying the species of the five genera above-mentioned in the Iberian Peninsula, which has one of the highest biodiversity levels in Europe. We discovered and described two new species from Spain, promoted a subspecies to species and proposed other nomenclatural acts to stabilise these hoverflies' classification in Europe. Our results are reinforced with DNA analysis to locate the studied species in a wider systematic framework within the Brachyopini. Five genera of Brachyopini, Chrysogaster Meigen, 1800, Melanogaster Rondani, 1857, Lejogaster Rondani, 1857, Orthonevra Macquart, 1829 and Riponnensia Maibach et al. 1994a are here revised from the Iberian region. Two new species, Melanogaster baetica Ricarte and Nedeljković, sp. n. and Orthonevra arcana Ricarte and Nedeljković sp. n., are described from Spain, and a third species, Chrysogaster coerulea Strobl in Czerny and Strobl, 1909 stat. n., is reinstated as valid and redescribed. A lectotype is designated for Orthonevra plumbago (Loew, 1840). The holotype of Orthonevra incisa (Loew, 1843) and the lectotype of O. plumbago are described in detail and illustrated. Melanogaster baetica sp. n. is similar to Melanogaster parumplicata (Loew, 1840) in male genitalia morphology, while O. arcana sp. n. is similar to O. incisa in the entirely-pollinose sternum I and the conspicuous incision on the posterior margin of tergum V in female. The first Iberian record of Chrysogaster rondanii Maibach and Goeldlin de Tiefenau, 1995 is provided, whilst Melanogaster aerosa is removed from the Iberian checklist of Syrphidae. Identification keys are presented to the five Brachyopini genera and 18 species now reported from the Iberian Peninsula (Chrysogaster, 6 spp.; Lejogaster, 2 spp.; Melanogaster, 3 spp.; Orthonevra, 5 spp.; Riponnensia, 2 spp.). COI (Cytochrome c oxidase subunit I) barcodes of the two new species plus C. coerulea, Chrysogaster solstitialis (Fallén, 1817), Orthonevra nobilis (Fallén, 1817) and Orthonevra frontalis (Loew, 1843) were successfully obtained from Spanish specimens. A COI-based tree was produced to locate these taxa in a wider systematic framework within the tribe. [ABSTRACT FROM AUTHOR]
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- 2022
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21. Response to Zamani et al. (2020): The omission of critical data in the pursuit of 'revolutionary' methods to accelerate the description of species
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Michael Sharkey, Brian Brown, Austin Baker, and Marko Mutanen
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COI barcode ,minimalist description ,Braconidae ,Zoology ,QL1-991 - Abstract
Here we respond to the criticisms leveled against a proposal that suggested an efficient solution to the taxonomic impediment. We clarify some of our objectives and demonstrate that many of the criticisms apply more to traditional approaches to taxonomy rather than to our minimalist approach.
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- 2021
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22. A new species of the genus Separatatus Chen & Wu (Hymenoptera, Braconidae, Alysiinae) from South Korea.
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Ju-Hyoeng Sohn, Achterberg, Cornelis van, Sangjin Kim, Jongok Lim, and Hyojoong Kim
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BRACONIDAE , *CYTOCHROME oxidase , *HYMENOPTERA , *LIFE sciences , *SPECIES , *INSECT anatomy - Published
- 2022
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23. A new species of Pseudophanerotoma (Hymenoptera, Braconidae) from Nayarit, Mexico.
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Falcón-Brindis, Armando, León-Cortés, Jorge L., Mancilla-Brindis, Rubén F., Orlando Estrada-Virgen, Mario, and Cambero-Campos, Octavio J.
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HYMENOPTERA , *BRACONIDAE , *BIOLOGICAL classification , *SPECIES , *LEPIDOPTERA , *DIPTERA - Abstract
Parasitoid wasps are known to be among the most abundant and species-rich on Earth and thus considered an ecologically important group of arthropods. Braconid wasps play a key role in regulating the populations of Lepidoptera, Coleoptera, and Diptera. However, the biology and taxonomy of numerous parasitoid species remain poorly known. In Mexico, only 17 species of the subfamily Cheloninae have been described. A new species of Pseudophanerotoma Zettel, 1990 (Hymenoptera, Braconidae), P. huichol sp. nov., is described from Nayarit, Mexico. The tortricid moth Cryptaspasma perseana Gilligan & Brown, 2011 is reported as the host of this parasitoid wasp. Detailed taxonomic and barcoding information are provided. [ABSTRACT FROM AUTHOR]
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- 2022
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24. Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation.
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Creedy, Thomas J., Andújar, Carmelo, Meramveliotakis, Emmanouil, Noguerales, Victor, Overcast, Isaac, Papadopoulou, Anna, Morlon, Hélène, Vogler, Alfried P., Emerson, Brent C., and Arribas, Paula
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GENETIC barcoding , *COMING of age , *DNA , *FRESHWATER habitats - Abstract
Metabarcoding of DNA extracted from community samples of whole organisms (whole organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and freshwater metazoan communities to provide rapid, accurate and high resolution data for novel molecular ecology research. The growth of this field has been accompanied by considerable development that builds on microbial metabarcoding methods to develop appropriate and efficient sampling and laboratory protocols for whole organism metazoan communities. However, considerably less attention has focused on ensuring bioinformatic methods are adapted and applied comprehensively in wocDNA metabarcoding. In this study we examined over 600 papers and identified 111 studies that performed COI metabarcoding of wocDNA. We then systematically reviewed the bioinformatic methods employed by these papers to identify the state‐of‐the‐art. Our results show that the increasing use of wocDNA COI metabarcoding for metazoan diversity is characterised by a clear absence of bioinformatic harmonisation, and the temporal trends show little change in this situation. The reviewed literature showed (i) high heterogeneity across pipelines, tasks and tools used, (ii) limited or no adaptation of bioinformatic procedures to the nature of the COI fragment, and (iii) a worrying underreporting of tasks, software and parameters. Based upon these findings we propose a set of recommendations that we think the metabarcoding community should consider to ensure that bioinformatic methods are appropriate, comprehensive and comparable. We believe that adhering to these recommendations will improve the long‐term integrative potential of wocDNA COI metabarcoding for biodiversity science. [ABSTRACT FROM AUTHOR]
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- 2022
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25. Declining Population Sizes and Loss of Genetic Diversity in Commercial Fishes: A Simple Method for a First Diagnostic
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Natalia Petit-Marty, Min Liu, Iris Ziying Tan, Arthur Chung, Bàrbara Terrasa, Beatriz Guijarro, Francesc Ordines, Sergio Ramírez-Amaro, Enric Massutí, and Celia Schunter
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adaptive potential ,COI barcode ,conservation ,fisheries ,global change ,over-fishing ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Exploited fish species may have or are experiencing declines in population sizes coupled with changes in their environmental conditions owing to global change. Declining populations might lead to a decrease in genetic diversity, which in turn may produce losses of adaptive potential to face current and future environmental changes. Thus, this study aims to answer a simple, even naive question, given the complexity of the subject: Could we use a simple method to obtain information on the loss of genetic diversity in exploited fish species? We investigated the use of the levels of genetic diversity in the widely used genetic marker Cytochrome C Oxidase subunit I (COI) mitochondrial gene. Estimates of genetic diversity in COI were obtained for populations of seven fish species with different commercial importance from the East China Sea. These estimates were contrasted against large datasets of genetic diversity in COI for fish species (East-Asian N=118, and worldwide N=1425), and six control species with known biology and history. We found that estimates of genetic diversity in COI match the expectations from theoretical predictions and known declines by fishing pressures. Thus, the answer to our question is affirmative and we conclude that estimates of genetic diversity in COI provide an effective first diagnostic of the conservation status of exploited fish species.
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- 2022
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26. History Does Not Repeat Itself; It Rhymes: Range Expansion and Outbreak of Plecia longiforceps (Diptera: Bibionidae) in East Asia.
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Kim, Sangil, Jung, Seunghun, Choi, Jonghwan, Tsai, Cheng-Lung, Farrell, Brian D, and Shin, Seunggwan
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BIBIONIDAE ,DISEASE outbreaks ,TURF management - Abstract
Plecia longiforceps Duda (Diptera: Bibionidae) is reported for the first time from Korea. P. longiforceps has been previously known from the East Asian subtropics, south of the 33rd parallel, including southeastern China, Taiwan, and the Ryukyu Islands of Japan. An integrative taxonomic approach based on morphological examination of male genitalia and molecular analysis of mitochondrial cytochrome c oxidase subunit I gene sequences confirms the species identification. The recent outbreak of P. longiforceps in the Seoul Metropolitan Area, Korea, documented herein represents the northernmost record of this species and suggests its possible range expansion into the temperate zone. Similar to the range expansion and outbreak history of Plecia nearctica Hardy (Diptera: Bibionidae) in North America around the Gulf of Mexico in the 1960–1970s, P. longiforceps may become a new invasive pest in temperate East Asia. Here, we evaluate range expansion and invasion potential of P. longiforceps through Ensemble species distribution modeling and show that a great portion of Northeast Asia and Japan will likely become habitable for P. longiforceps in the next 50 years. [ABSTRACT FROM AUTHOR]
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- 2022
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27. Strain composition and genetic diversity of the fall armyworm Spodoptera frugiperda (Lepidoptera, Noctuidae): new insights from seven countries in West Africa.
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Sarr, Oumar Mal, Garba, Madougou, Bal, Amadou Bocar, Hima, Karmadine, Ndiaye, Mbaye, Fossoud, Amandine, Clamens, Anne-Laure, Tavoillot, Johannes, and Gauthier, Nathalie
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FALL armyworm , *GENETIC variation , *NOCTUIDAE , *BIOLOGICAL invasions , *LEPIDOPTERA , *INSECT pests , *HAPLOTYPES - Abstract
The fall armyworm (FAW), Spodoptera frugiperda, a major agricultural insect pest in the Western Hemisphere, currently also poses a significant threat to many cereal crops in Africa. FAW consists of two morphocryptic strains, the corn- and the rice strains, which were thought to display typical genetic, physiological and behavioural features. However, this is not absolutely true, rendering direct identification and distribution of the strains impossible in field. Thus, to investigate 1) the composition and diversity of FAW strains, 2) their distribution at various spatial scales, and 3) the host plants they use, in invaded countries we used the COI barcode fragment, a marker capable of accurately distinguishing the two strains. A total of 125 specimens mainly sampled on maize in Niger and Senegal and to a lesser extent in Guinea, Mali, Togo, Burkina Faso and Cape Verde were analyzed. Sixteen haplotypes were identified among which two occurred very frequently. Phylogenetic analysis delineated two lineages, the rice and corn strains, but no typical geographical and host-plant patterns were found. The FAW-strain haplotypes derived from West African specimens were genetically comparable with those sampled elsewhere in Africa, the Americas and Asia. Considering all sites and plants sampled, the corn strain slightly predominated but on maize, the two strains were statistically comparable. Their distribution is largely sympatric at region, field and even maize plant scales. These findings are compared to populations recorded elsewhere and are discussed in the framework of biological invasions, and the management and ecology of the species. [ABSTRACT FROM AUTHOR]
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- 2021
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28. A new species of the genus Hylcalosia Fischer (Hymenoptera: Braconidae: Alysiinae) from South Korea, with a key to the Korean species.
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Ju-Hyeong Sohn, van Achterberg, Cornelis, Yunjong Han, and Hyojoong Kim
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CYTOCHROME oxidase , *BRACONIDAE , *GENETIC barcoding , *HYMENOPTERA , *SPECIES - Abstract
The species of the genus Hylcalosia Fischer, 1967 (Braconidae: Alysiinae) from South Korea are revised. One species, Hylcalosia bicolor sp. nov., is new to science. They are described and illustrated herein and an identification key to the Korean species is added. In addition, the DNA barcode region of the mitochondrial cytochrome c oxidase subunit I (COI) has been analysed for the new species and H. sutchanica is used for genetic comparison. [ABSTRACT FROM AUTHOR]
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- 2021
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29. Three new species and two new records of the genus Phaenocarpa Foerster (Hymenoptera, Braconidae, Alysiinae) from South Korea.
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Ju-Hyeong Sohn, van Achterberg, Cornelis, Gyeonghyeon Lee, and Hyojoong Kim
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CYTOCHROME oxidase , *BRACONIDAE , *GENETIC barcoding , *HYMENOPTERA , *SPECIES - Abstract
The species of the genus Phaenocarpa Foerster, 1863 (Braconidae: Alysiinae) from South Korea are revised, and the genus is recorded for the first time from South Korea. Three species, Phaenocarpa artotemporalis sp. nov., P. brachyura sp. nov. and P. lobata sp. nov., are new to Science, and two species, P. masha Belokobylskij, 1998 and P. fidelis Fischer, 1970, are newly recognized in South Korea. They are described and illustrated herein with a provision of the identification key to the Korean species. In addition, the DNA barcode region of the mitochondrial cytochrome c oxidase subunit I (COI) has been analyzed for the six species including P. ruficeps for genetic comparison. [ABSTRACT FROM AUTHOR]
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- 2021
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30. Barcoding pest species in a biodiversity hot-spot: the South African polyphagous broad-nosed weevils (Coleoptera, Curculionidae, Entiminae).
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Hansen, Steffan, Addison, Pia, Benoit, Laure, and Haran, Julien M.
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CURCULIONIDAE ,BIODIVERSITY ,BEETLES ,AGRICULTURAL pests ,AGRICULTURAL industries - Abstract
Polyphagous broad nosed weevils (Curculionidae: Entiminae) constitute a large and taxonomically challenging subfamily that contains economically significant agricultural pests worldwide. South Africa is a hot-spot for biodiversity and several species of indigenous and endemic genera of Entiminae have shifted on to cultivated plants, with some being phytosanitary pests. The sporadic pest status of many species (where the species has an occasional economic impact on the agricultural industry, but is not encountered often enough that is is readily recognisable by researchers and agricultural extension workers) and the presence of pest complexes and cryptic species represent an identification challenge to non-specialists. Furthermore, no comprehensive identification tools exist to identify immature stages that may be found in crops/soil. In this paper, a curated barcoding database with 70 COI sequences from 41 species (39 Entiminae, 2 Cyclominae) is initiated, to assist with the complexity of identification of species in this group. [ABSTRACT FROM AUTHOR]
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- 2021
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31. Minimalist revision and description of 403 new species in 11 subfamilies of Costa Rican braconid parasitoid wasps, including host records for 219 species.
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Sharkey, Michael J., Janzen, Daniel H., Hallwachs, Winnie, Chapman, Eric G., Smith, M. Alex, Dapkey, Tanya, Brown, Allison, Ratnasingham, Sujeevan, Naik, Suresh, Manjunath, Ramya, Perez, Kate, Milton, Megan, Hebert, Paul, Shaw, Scott R., Kittel, Rebecca N., Solis, M. Alma, Metz, Mark A., Goldstein, Paul Z., Brown, John W., and Quicke, Donald L. J.
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BRACONIDAE , *ZOOLOGICAL nomenclature , *SPECIES , *INDEX numbers (Economics) - Abstract
Three new genera are described: Michener (Proteropinae), Bioalfa (Rogadinae), and Hermosomastax (Rogadinae). Keys are given for the New World genera of the following braconid subfamilies: Agathidinae, Braconinae, Cheloninae, Homolobinae, Hormiinae, Ichneutinae, Macrocentrinae, Orgilinae, Proteropinae, Rhysipolinae, and Rogadinae. In these subfamilies 416 species are described or redescribed. Most of the species have been reared and all but 13 are new to science. A consensus sequence of the COI barcodes possessed by each species is employed to diagnose the species, and this approach is justified in the introduction. Most descriptions consist of a lateral or dorsal image of the holotype, a diagnostic COI consensus barcode, the Barcode Index Number (BIN) code with a link to the Barcode of Life Database (BOLD), and the holotype specimen information required by the International Code of Zoological Nomenclature. The following species are treated and those lacking authorship are newly described here with authorship attributable to Sharkey except for the new species of Macrocentrinae which are by Sharkey & van Achterberg: AGATHIDINAE: Aerophilus paulmarshi, Mesocoelus davidsmithi, Neothlipsis bobkulai, Plesiocoelus vanachterbergi, Pneumagathis erythrogastra (Cameron, 1905), Therophilus bobwhartoni, T. donaldquickei, T. gracewoodae, T. maetoi, T. montywoodi, T. penteadodiasae, Zacremnops brianbrowni, Z. coatlicue Sharkey, 1990, Zacremnops cressoni (Cameron, 1887), Z. ekchuah Sharkey, 1990, Z. josefernandezi, Zelomorpha sarahmeierottoae. BRACONINAE: Bracon alejandromarini, B. alejandromasisi, B. alexamasisae, B. andresmarini, B. andrewwalshi, B. anniapicadoae, B. anniemoriceae, B. barryhammeli, B. bernardoespinozai, B. carlossanabriai, B. chanchini, B. christophervallei, B. erasmocoronadoi, B. eugeniephillipsae, B. federicomatarritai, B. frankjoycei, B. gerardovegai, B. germanvegai, B. isidrochaconi, B. jimlewisi, B. josejaramilloi, B. juanjoseoviedoi, B. juliodiazi, B. luzmariaromeroae, B. manuelzumbadoi, B. marialuisariasae, B. mariamartachavarriae, B. mariorivasi, B. melissaespinozae, B. nelsonzamorai, B. nicklaphami, B. ninamasisae, B. oliverwalshi, B. paulamarinae, B. rafamoralesi, B. robertofernandezi, B. rogerblancoi, B. ronaldzunigai, B. sigifredomarini, B. tihisiaboshartae, B. wilberthbrizuelai, Digonogastra montylloydi, D. montywoodi, D. motohasegawai, D. natwheelwrighti, D. nickgrishini. CHELONINAE: Adelius adrianguadamuzi, A. gauldi Shimbori & Shaw, 2019, A. janzeni Shimbori & Shaw, 2019, Ascogaster gloriasihezarae, A. grettelvegae, A. guillermopereirai, A. gustavoecheverrii, A. katyvandusenae, A. luisdiegogomezi, Chelonus alejandrozaldivari, C. gustavogutierrezi, C. gustavoinduni, C. harryramirezi, C. hartmanguidoi, C. hazelcambroneroae, C. iangauldi, C. isidrochaconi, C. janecheverriae, C. jeffmilleri, C. jennyphillipsae, C. jeremydewaardi, C. jessiehillae, C. jesusugaldei, C. jimlewisi, C. jimmilleri, C. jimwhitfieldi, C. johanvalerioi, C. johnburnsi, C. johnnoyesi, C. jorgebaltodanoi, C. jorgehernandezi, C. josealfredohernandezi, C. josefernandeztrianai, C. josehernandezcortesi, C. josemanuelperezi, C. josephinerodriguezae, C. juanmatai, C. junkoshimurae, C. kateperezae, C. luciariosae, C. luzmariaromeroae, C. manuelpereirai, C. manuelzumbadoi, C. marianopereirai, C. maribellealvarezae, C. markmetzi, C. markshawi, C. martajimenezae, C. mayrabonillae, C. meganmiltonae, C. melaniamunozae, C. michaelstroudi, C. michellevanderbankae, C. mingfangi, C. minorcarmonai, C. monikaspringerae, C. moniquegilbertae, C. motohasegawai, C. nataliaivanovae, C. nelsonzamorai, C. normwoodleyi, C. osvaldoespinozai, C. pamelacastilloae, C. paulgoldsteini, C. paulhansoni, C. paulheberti, C. petronariosae, C. ramyamanjunathae, C. randallgarciai, C. rebeccakittelae, C. robertoespinozai, C. robertofernandezi, C. rocioecheverriae, C. rodrigogamezi, C. ronaldzunigai, C. rosibelelizondoae, C. rostermoragai, C. ruthfrancoae, C. scottmilleri, C. scottshawi, C. sergioriosi, C. sigifredomarini, C. stevearonsoni, C. stevestroudi, C. sujeevanratnasinghami, C. sureshnaiki, C. torbjornekremi, C. yeimycedenoae, Leptodrepana alexisae, L. erasmocoronadoi, L. felipechavarriai, L. freddyquesadai, L. gilbertfuentesi, L. manuelriosi, Phanerotoma almasolisae, P. alvaroherrerai, P. anacordobae, P. anamariamongeae, P. andydeansi, P. angelagonzalezae, P. angelsolisi, P. barryhammeli, P. bernardoespinozai, P. calixtomoragai, P. carolinacanoae, P. christerhanssoni, P. christhompsoni, P. davesmithi, P. davidduthiei, P. dirksteinkei, P. donquickei, P. duniagarciae, P. duvalierbricenoi, P. eddysanchezi, P. eldarayae, P. eliethcantillanoae, P. jenopappi, Pseudophanerotoma alanflemingi, Ps. albanjimenezi, Ps. alejandromarini, Ps. alexsmithi, Ps. allisonbrownae, Ps. bobrobbinsi. HOMOLOBINAE: Exasticolus jennyphillipsae, E. randallgarciai, E. robertofernandezi, E. sigifredomarini, E. tomlewinsoni. HORMIINAE: Hormius anamariamongeae, H. angelsolisi, H. anniapicadoae, H. arthurchapmani, H. barryhammeli, H. carmenretanae, H. carloswalkeri, H. cesarsuarezi, H. danbrooksi, H. eddysanchezi, H. erikframstadi, H. georgedavisi, H. grettelvegae, H. gustavoinduni, H. hartmanguidoi, H. hectoraritai, H. hesiquiobenitezi, H. irenecanasae, H. isidrochaconi, H. jaygallegosi, H. jimbeachi, H. jimlewisi, H. joelcracrafti, H. johanvalerioi, H. johnburleyi, H. joncoddingtoni, H. jorgecarvajali, H. juanmatai, H. manuelzumbadoi, H. mercedesfosterae, H. modonnellyae, H. nelsonzamorai, H. pamelacastilloae, H. raycypessi, H. ritacolwellae, H. robcolwelli, H. rogerblancosegurai, H. ronaldzunigai, H. russchapmani, H. virginiaferrisae, H. warrenbrighami, H. willsflowersi. ICHNEUTINAE: Oligoneurus kriskrishtalkai, O. jorgejimenezi, Paroligoneurus elainehoaglandae, P. julianhumphriesi, P. mikeiviei. MACROCENTRINAE: Austrozele jorgecampabadali, A. jorgesoberoni, Dolichozele gravitarsis (Muesebeck, 1938), D. josefernandeztrianai, D. josephinerodriguezae, Hymenochaonia kalevikulli, H. kateperezae, H. katherinebaillieae, H. katherineellisonae, H. katyvandusenae, H. kazumifukunagae, H. keithlangdoni, H. keithwillmotti, H. kenjinishidai, H. kimberleysheldonae, H. krisnorvigae, H. lilianamadrigalae, H. lizlangleyae, Macrocentrus fredsingeri, M. geoffbarnardi, M. gregburtoni, M. gretchendailyae, M. grettelvegae, M. gustavogutierrezi, M. hannahjamesae, M. harisridhari, M. hillaryrosnerae, M. hiroshikidonoi, M. iangauldi, M. jennyphillipsae, M. jesseausubeli, M. jessemaysharkae, M. jimwhitfieldi, M. johnbrowni, M. johnburnsi, M. jonathanfranzeni, M. jonathanrosenbergi, M. jorgebaltodanoi, M. lucianocapelli. ORGILINAE: Orgilus amyrossmanae, O. carrolyoonae, O. christhompsoni, O. christinemcmahonae, O. dianalipscombae, O. ebbenielsoni, O. elizabethpennisiae, O. evertlindquisti, O. genestoermeri, O. jamesriegeri, O. jeanmillerae, O. jeffmilleri, O. jerrypowelli, O. jimtiedjei, O. johnlundbergi, O. johnpipolyi, O. jorgellorentei, O. larryspearsi, O. marlinricei, O. mellissaespinozae, O. mikesmithi, O. normplatnicki, O. peterrauchi, O. richardprimacki, O. sandraberriosae, O. sarahmirandae, O. scottmilleri, O. scottmorii, Stantonia billalleni, S. brookejarvisae, S. donwilsoni, S. erikabjorstromae, S. garywolfi, S. henrikekmani, S. luismirandai, S. miriamzunzae, S. quentinwheeleri, S. robinkazmierae, S. ruthtifferae. PROTEROPINAE: Hebichneutes tricolor Sharkey & Wharton, 1994, Proterops iangauldi, P. vickifunkae, Michener charlesi. RHYSIPOLINAE: Pseudorhysipolis luisfonsecai, P. mailyngonzalezae Rhysipolis julioquirosi. ROGADINAE: Aleiodes adrianaradulovae, A. adrianforsythi, A. agnespeelleae, A. alaneaglei, A. alanflemingi, A. alanhalevii, A. alejandromasisi, A. alessandracallejae, A. alexsmithi, A. alfonsopescadori, A. alisundermieri, A. almasolisae, A. alvarougaldei, A. alvaroumanai, A. angelsolisi, A. annhowdenae, A. bobandersoni, A. carolinagodoyae, A. charlieobrieni, A. davefurthi, A. donwhiteheadi, A. doylemckeyi, A. frankhovorei, A. henryhowdeni, A. inga Shimbori & Shaw, 2020, A. johnchemsaki, A. johnkingsolveri, A. gonodontovorus Shimbori & Shaw, 2020, A. manuelzumbadoi, A. mayrabonillae, A. michelledsouzae, A. mikeiviei, A. normwoodleyi, A. pammitchellae, A. pauljohnsoni, A. rosewarnerae, A. steveashei, A. terryerwini, A. willsflowersi, Bioalfa pedroleoni, B. alvarougaldei, B. rodrigogamezi, Choreborogas andydeansi, C. eladiocastroi, C. felipechavarriai, C. frankjoycei, Clinocentrus andywarreni, Cl. angelsolisi, Cystomastax alexhausmanni, Cy. angelagonzalezae, Cy. ayaigarashiae, Hermosomastax clavifemorus Quicke sp. nov., Heterogamus donstonei, Pseudoyelicones bernsweeneyi, Stiropius bencrairi, S. berndkerni, S. edgargutierrezi, S. edwilsoni, S. ehakernae, Triraphis billfreelandi, T. billmclarneyi, T. billripplei, T. bobandersoni, T. bobrobbinsi, T. bradzlotnicki, T. brianbrowni, T. brianlaueri, T. briannestjacquesae, T. camilocamargoi, T. carlosherrerai, T. carolinepalmerae, T. charlesmorrisi, T. chigiybinellae, T. christerhanssoni, T. christhompsoni, T. conniebarlowae, T. craigsimonsi, T. defectus Valerio, 2015, T. danielhubi, T. davidduthiei, T. davidwahli, T. federicomatarritai, T. ferrisjabri, T. mariobozai, T. martindohrni, T. matssegnestami, T. mehrdadhajibabaei, T. ollieflinti, T. tildalauerae, Yelicones dirksteinkei, Y. markmetzi, Y. monserrathvargasae, Y. tricolor Quicke, 1996. Y. woldai Quicke, 1996. The following new combinations are proposed: Neothlipsis smithi (Ashmead), new combination for Microdus smithi Ashmead, 1894; Neothlipsis pygmaeus (Enderlein), new combination for Microdus pygmaeus Enderlein, 1920; Neothlipsis unicinctus (Ashmead), new combination for Microdus unicinctus Ashmead, 1894; Therophilus anomalus (Bortoni and Penteado-Dias) new combination for Plesiocoelus anomalus Bortoni and Penteado-Dias, 2015; Aerophilus areolatus (Bortoni and Penteado-Dias) new combination for Plesiocoelus areolatus Bortoni and Penteado-Dias, 2015; Pneumagathis erythrogastra (Cameron) new combination for Agathis erythrogastra Cameron, 1905. Dolichozele citreitarsis (Enderlein), new combination for Paniscozele citreitarsis Enderlein, 1920. Dolichozele fuscivertex (Enderlein) new combination for Paniscozele fuscivertex Enderlein, 1920. Finally, Bassus brooksi Sharkey, 1998 is synonymized with Agathis erythrogastra Cameron, 1905; Paniscozele griseipes Enderlein, 1920 is synonymized with Dolichozele koebelei Viereck, 1911; Paniscozele carinifrons Enderlein, 1920 is synonymized with Dolichozele fuscivertex (Enderlein, 1920); and Paniscozele nigricauda Enderlein, 1920 is synonymized with Dolichozele quaestor (Fabricius, 1804). (originally described as Ophion quaestor Fabricius, 1804). [ABSTRACT FROM AUTHOR]
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- 2021
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32. 醒斑银弄蝶 Carterocephalus alcina Evans, 1939 与 其近似种(鳞翅目: 弄蝶科: 链弄蝶亚科) 的关系.
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侯永翔, 李宇飞, 王敏, 千葉秀幸, and 范骁凌
- Abstract
Copyright of Journal of South China Agricultural University is the property of Gai Kan Bian Wei Hui and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2021
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33. Two new species of the pseudoscorpion genus Geogarypus (Pseudoscorpiones: Geogarypidae) from northern Australia.
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Cullen, Karen L. and Harvey, Mark S.
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PSEUDOSCORPIONS ,SPECIES ,BAR codes - Abstract
The pseudoscorpion genus Geogarypus is widely distributed around the world, but with only six species recorded from Australia. Two new species are described from northern Australia: G. facetus from Northern Territory and G. plusculus from Western Australia, and COI barcodes are provided for both species. [ABSTRACT FROM AUTHOR]
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- 2021
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34. New species of the pseudoscorpion genus Synsphyronus (Pseudoscorpiones: Garypidae) from Australia.
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Cullen, Karen L. and Harvey, Mark S.
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PSEUDOSCORPIONS ,NUMBERS of species ,SPECIES ,METATARSUS - Abstract
The pseudoscorpion genus Synsphyronus is endemic to the Australasian region with 30 species from Australia, two from New Zealand, and one from New Caledonia. Seven new species are described from Australia mostly based on specimens collected on various BushBlitz expeditions: S. codyi sp. nov., S. patricki sp. nov., S. pharangites sp. nov., S. samueli sp. nov. and S. xynus sp. nov. from Western Australia, and S. marinae sp. nov. and S. sertus sp. nov. from the Northern Territory. Like other species of Synsphyronus, all species have reduced trichobothrial numbers on at least one chelal finger, with S. codyi, S. patricki, S. samueli and S. sertus having eight trichobothria on the fixed finger and three on the movable finger (denoted as 8/3), S. marinae has 8/2, S. xynus has 8/1 and S. pharangites has 7/1. Five of the new species (S. codyi, S. marinae, S. pharangites, S. sertus and S. xynus) have fused metatarsi and tarsi, which brings the total number of species with this neotenic feature to 12 of the 40 named species. Certain meristic data for S. gurdoni Harvey, Abrams and Burger, 2015 are corrected. Six of the new species have only been found at a single location, despite concentrated searching for additional specimens in adjacent habitats, and may have very small distributions indicative of short-range endemism. The seventh species, S. xynus, is widely distributed in the Pilbara region of Western Australia. COI barcode data are provided for S. marinae, S. sertus and S. xynus [ABSTRACT FROM AUTHOR]
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- 2021
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35. Redescription and molecular characterization of Crenidens macracanthus Günther, 1874 (Pisces: Sparidae), and first record of C. indicus Day, 1873 in the eastern Indian Ocean.
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Roul, Subal Kumar, Jeena, N. S., Ghosh, Shubhadeep, and Rohit, Prathibha
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Crenidens macracanthus was originally described in 1874 based on a single specimen collected from Chennai (Madras), south-east coast of India. In 1875, the species was synonymized with C. indicus without citing any valid reason. Since then, no taxonomic studies have been attempted for the genus Crenidens, except in 2013 the species was resurrected from synonymy and redescribed as a valid species based on the holotype and non-type specimen. In view of the fact that C. macracanthus is a poorly known species, it is redescribed based on examination of 30 additional specimens of 105.8–162.2 mm SL, collected from Puri, Odisha, north-east coast of India (Bay of Bengal) from 2017–2019, using morphological and molecular examinations. Our study provides a detailed morphological description, first colour photographs and phylogenetic analysis using COI barcodes of the species. The study has expanded the range in several morpho-meristic characters in comparison with the type and non-type specimens described earlier. The species in fresh condition can be easily distinguished from its two congeners (C. crenidens and C. indicus) by the yellowish tip of the lower caudal-fin lobe. Our study has also extended the distribution range of C. indicus (previously known only from the north-eastern Arabian Sea) to the eastern Indian Ocean, based on examination of a preserved specimen collected from Tuticorin, Tamil Nadu. [ABSTRACT FROM AUTHOR]
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- 2020
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36. Application of DNA Barcoding for the Identification of Snake Gallbladders as a Traditional Chinese Medicine
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Zhou, Chenggao, Gan, Suran, Zhang, Jie, Fan, Yeqin, Li, Bin, Wan, Luosheng, Nie, Jing, Wang, Xiaogang, and Chen, Jiachun
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- 2022
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37. A new clawed lobster of the genus Nephropsis Wood-Mason, 1872 (Crustacea: Decapoda: Nephropidae) from the Indonesian deep-sea cruise, SJADES 2018.
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Su-Ching Chang, Tin-Yam Chan, and Kumar, Appukuttannair Biju
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- *
DECAPODA , *CRUSTACEA , *LOBSTERS , *SPECIES , *BIODIVERSITY , *COASTS - Abstract
A new species of the clawed lobster genus Nephropsis Wood-Mason, 1872, collected recently by the South Java Deep-Sea Biodiversity Expedition (SJADES 2018) off the southern coast of Java in Indonesia, is described. The new species is closely related to Nephropsis carpenteri Wood-Mason, 1885, but differs in the shapes of the carinae and groove on the carapace, as well as in the spination and relative length of the pereopods. The large sequence divergence in the barcoding gene COI also supports the recognition of the new species. [ABSTRACT FROM AUTHOR]
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- 2020
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38. Revised taxonomic status of Pseudalmenus barringtonensis Waterhouse, 1928 stat. rev. (Lepidoptera: Lycaenidae): uncovering Australia's greatest taxonomic fraud.
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Braby, Michael F. and Eastwood, Rod
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LYCAENIDAE , *FRAUD , *LARVAE , *TAXONOMY , *THEFT , *LEPIDOPTERA , *BUTTERFLIES - Abstract
The Australian endemic lycaenid Pseudalmenus H.H. Druce, 1902 occupies a unique phylogenetic position within the Theclinae–Polyommatinae assemblage. Although the genus exhibits complex geographic variation, it has long been considered to be monotypic. However, evidence from adult phenotype (colour pattern), immature stages (final instar larva) and ecology (ant specificity) (total of 10 unique character states) as well as limited genetic data (mitochondrial COI) suggest that there are two species, namely, P. chlorinda (Blanchard, 1848) from Tasmania and the mainland of south-eastern Australia and P. barringtonensis Waterhouse, 1928 stat. rev., which is allopatric and narrowly restricted to montane areas in northern New South Wales. Examination of the 'holotype' male of P. barringtonensis in the Australian Museum showed that it is a fake, although the data label is genuine; the specimen is actually P. chlorinda chloris Waterhouse & Lyell, 1914 that has been modified with red paint to resemble P. barringtonensis. The true holotype is currently missing, but a specimen in the Australian Museum (registration No. K199026) that is part of the Colin W. Wyatt Theft Collection with a fictitious label is almost certainly the true holotype of P. barringtonensis. We discuss the history of this most unusual and bizarre circumstance and conclude that Wyatt stole the holotype sometime in 1946 before he returned to England (~72 years ago) and fabricated the fake holotype as a replacement specimen. Such a fraudulent and unprecedented act surely ranks as Australia's greatest taxonomic fraud. The Australian endemic butterfly Pseudalmenus chlorinda is evolutionary distinct and exhibits complex geographical variation. Our aim was to resolve the taxonomy of the species using morphological, molecular and ecological data. We conclude that there are two species, and that the 'holotype' male of P. barringtonensis is a fake fabricated by Colin Wyatt as a replacement specimen. [ABSTRACT FROM AUTHOR]
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- 2019
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39. A new deep-sea species of the caridean shrimp genus Lebbeus White, 1847 (Crustacea: Decapoda: Thoridae) from southern Java, Indonesia.
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Tomoyuki Komai, Su-Ching Chang, and Tin-Yam Chan
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DECAPODA , *SHRIMPS , *CRUSTACEA , *SPECIES , *ZOOLOGY - Abstract
A new species of the thorid genus Lebbeus White, 1847, L. java new species, is described on the basis of two ovigerous female specimens from south of Java, Indonesia, collected at depths of 637-689 m. It is morphologically most similar to L. formosus Chang, Komai & Chan, 2010, known from off Taiwan, amongst about 70 congeners, but subtle morphological differences and genetic divergence estimated from the barcoding segments of the mitochondrial COI gene warrant the recognition of the new species. The new species is the third representative of Lebbeus from Indonesian waters. [ABSTRACT FROM AUTHOR]
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- 2019
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40. Molecular comparisons of native range collections of Gadirtha fusca, a potential biological control agent of Chinese tallowtree.
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Wheeler, G. S., Dyer, K., Broggi, E., Ding, Jianqing, Purcell, Matthew, and Madeira, P.
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BIOLOGICAL weed control , *NOXIOUS weeds , *EUPHORBIACEAE , *HERBIVORES , *TALLOW tree - Abstract
Chinese tallowtree, Triadica sebifera (L.) Small (Euphorbiaceae), is one of the worst invasive weeds of the southeastern USA impacting coastal wetlands, forests, and natural areas. A proposed biological control candidate, the defoliating moth Gadirtha fusca Pogue (Lepidoptera: Nolidae) shows high specificity for the target weed Chinese tallowtree. A total of 13 field sites were sampled in the native range of this herbivore species. To determine if all individuals were the same taxon, molecular DNA analyses were conducted of these collections. These included collections from 2012, 2015 and 2016, from three regions and two adult color morphs. Molecular COI analysis was performed on thirty colonized individuals from these collections. The results of this analysis arranged all taxa into a single clade with average genetic divergence values of 0.3%. Comparison of these G. fusca sequences and those from other Gadirtha spp. all had divergence values that were equal to or exceeded 5%. These results indicate that all the G. fusca collections were a single species and they were distinct from other known members of this genus. [ABSTRACT FROM AUTHOR]
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- 2018
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41. Three new species and two new records of the genus Phaenocarpa Foerster (Hymenoptera, Braconidae, Alysiinae) from South Korea
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Juhyeong Sohn, Hyojoong Kim, Gyeonghyeon Lee, and Cornelis van Achterberg
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Insecta ,Arthropoda ,Zoology ,Hymenoptera ,Braconidae ,taxonomy ,Genus ,COI barcode ,Animalia ,systematics ,Ecology, Evolution, Behavior and Systematics ,Phaenocarpa ,Alysiinae ,biology ,biology.organism_classification ,Biota ,Ichneumonoidea ,koinobiont ,QL1-991 ,Insect Science ,cyclostome ,parasitoid wasp ,natural enemy - Abstract
The species of the genus Phaenocarpa Foerster, 1863 (Braconidae: Alysiinae) from South Korea are revised, and the genus is recorded for the first time from South Korea. Three species, Phaenocarpa artotemporalissp. nov., P. brachyurasp. nov. and P. lobatasp. nov., are new to Science, and two species, P. masha Belokobylskij, 1998 and P. fidelis Fischer, 1970, are newly recognized in South Korea. They are described and illustrated herein with a provision of the identification key to the Korean species. In addition, the DNA barcode region of the mitochondrial cytochrome c oxidase subunit I (COI) has been analyzed for the six species including P. ruficeps for genetic comparison.
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- 2021
42. Evaluation of the nemabiome approach for the study of equine strongylid communities
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Élise Courtot, Michel Boisseau, Sophie Dhorne-Pollet, Delphine Serreau, Amandine Gesbert, Fabrice Reigner, Marta Basiaga, Tetiana Kuzmina, Jérôme Lluch, Gwenolah Annonay, Claire Kuchly, Irina Diekmann, Jürgen Krücken, Georg von Samson-Himmelstjerna, Nuria Mach, Guillaume Sallé, Infectiologie et Santé Publique (UMR ISP), Université de Tours (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Interactions hôtes-agents pathogènes [Toulouse] (IHAP), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité Expérimentale de Physiologie Animale de l‘Orfrasiére (UE PAO), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Agriculture in Krakow, I.I. Schmalhausen Institute of Zoology of NASU, National Academy of Sciences of Ukraine (NASU), Génome et Transcriptome - Plateforme Génomique ( GeT-PlaGe), Plateforme Génome & Transcriptome (GET), Génopole Toulouse Midi-Pyrénées [Auzeville] (GENOTOUL), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Ecole Nationale Vétérinaire de Toulouse (ENVT), Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Génopole Toulouse Midi-Pyrénées [Auzeville] (GENOTOUL), Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Freie Universität Berlin, Institute for Parasitology and Tropical Veterinary Medicine, and MACH, Nuria
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[SDV] Life Sciences [q-bio] ,cyathostomin mock communities ,cytochrome c oxidase ,infective larvae ,[SDV]Life Sciences [q-bio] ,COI barcode ,equine strongylid species ,ITS-2 ,parasite control strategies - Abstract
Basic knowledge on the biology and epidemiology of equine strongylid species remains insufficient although it would contribute to the design of better parasite control strategies. Nemabiome is a convenient tool to quantify and to identify species in bulk samples that could overcome the hurdle that cyathostomin morphological identification represents. To date, this approach has relied on the internal transcribed spacer 2 (ITS-2) of the ribosomal RNA cistron and its predictive performance and associated biases both remain unaddressed.This study aimed to bridge this knowledge gap using cyathostomin mock communities and comparing performances of the ITS-2 and a cytochrome c oxidase subunit I (COI) barcode newly developed in this study. The effects of bioinformatic parameters were investigated to determine the best analytical pipelines. Subsequently, barcode predictive abilities were compared across various mock community compositions. The replicability of the approach and the amplification biases of each barcode were estimated. Results were also compared between various types of biological samples, i.e. eggs, infective larvae or adults.Overall, the proposed COI barcode was suboptimal relative to the ITS-2 rDNA region, because of PCR amplification biases, a reduced sensitivity and higher divergence from the expected community composition. Metabarcoding yielded consistent community composition across the three sample types, although infective larvae may remain the most tractable in the field. Additional strategies to improve the COI barcode performances are discussed. These results underscore the critical need of mock communities for metabarcoding purposes.
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- 2022
43. Assessing the Diversity and Systematics of Brachyopini Hoverflies (Diptera: Syrphidae) in the Iberian Peninsula, Including the Descriptions of Two New Species
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Universidad de Alicante. Departamento de Ciencias Ambientales y Recursos Naturales, Universidad de Alicante. Centro Iberoamericano de la Biodiversidad, Ricarte, Antonio, Nedeljković, Zorica, Aguado-Aranda, Pablo, Marcos-García, M. Ángeles, Universidad de Alicante. Departamento de Ciencias Ambientales y Recursos Naturales, Universidad de Alicante. Centro Iberoamericano de la Biodiversidad, Ricarte, Antonio, Nedeljković, Zorica, Aguado-Aranda, Pablo, and Marcos-García, M. Ángeles
- Abstract
Five genera of Brachyopini, Chrysogaster Meigen, 1800, Melanogaster Rondani, 1857, Lejogaster Rondani, 1857, Orthonevra Macquart, 1829 and Riponnensia Maibach et al. 1994a are here revised from the Iberian region. Two new species, Melanogaster baetica Ricarte and Nedeljković, sp. n. and Orthonevra arcana Ricarte and Nedeljković sp. n., are described from Spain, and a third species, Chrysogaster coerulea Strobl in Czerny and Strobl, 1909 stat. n., is reinstated as valid and redescribed. A lectotype is designated for Orthonevra plumbago (Loew, 1840). The holotype of Orthonevra incisa (Loew, 1843) and the lectotype of O. plumbago are described in detail and illustrated. Melanogaster baetica sp. n. is similar to Melanogaster parumplicata (Loew, 1840) in male genitalia morphology, while O. arcana sp. n. is similar to O. incisa in the entirely-pollinose sternum I and the conspicuous incision on the posterior margin of tergum V in female. The first Iberian record of Chrysogaster rondanii Maibach and Goeldlin de Tiefenau, 1995 is provided, whilst Melanogaster aerosa is removed from the Iberian checklist of Syrphidae. Identification keys are presented to the five Brachyopini genera and 18 species now reported from the Iberian Peninsula (Chrysogaster, 6 spp.; Lejogaster, 2 spp.; Melanogaster, 3 spp.; Orthonevra, 5 spp.; Riponnensia, 2 spp.). COI (Cytochrome c oxidase subunit I) barcodes of the two new species plus C. coerulea, Chrysogaster solstitialis (Fallén, 1817), Orthonevra nobilis (Fallén, 1817) and Orthonevra frontalis (Loew, 1843) were successfully obtained from Spanish specimens. A COI-based tree was produced to locate these taxa in a wider systematic framework within the tribe.
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- 2022
44. Declining Population Sizes and Loss of Genetic Diversity in Commercial Fishes: A Simple Method for a First Diagnostic
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Petit-Marty, N., Liu, M., Tan, I.Z., Terrasa, B., Guijarro, Beatriz, Ordines, Francesc, Ramírez-Amaro, Sergio, Massutí, Enric, Schunter, C., Petit-Marty, N., Liu, M., Tan, I.Z., Terrasa, B., Guijarro, Beatriz, Ordines, Francesc, Ramírez-Amaro, Sergio, Massutí, Enric, and Schunter, C.
- Abstract
Exploited fish species may have or are experiencing declines in population sizes coupled with changes in their environmental conditions owing to global change. Declining populations might lead to a decrease in genetic diversity, which in turn may produce losses of adaptive potential to face current and future environmental changes. Thus, this study aims to answer a simple, even naive question, given the complexity of the subject: Could we use a simple method to obtain information on the loss of genetic diversity in exploited fish species? We investigated the use of the levels of genetic diversity in the widely used genetic marker Cytochrome C Oxidase subunit I (COI) mitochondrial gene. Estimates of genetic diversity in COI were obtained for populations of seven fish species with different commercial importance from the East China Sea. These estimates were contrasted against large datasets of genetic diversity in COI for fish species (East-Asian N=118, and worldwide N=1425), and six control species with known biology and history. We found that estimates of genetic diversity in COI match the expectations from theoretical predictions and known declines by fishing pressures. Thus, the answer to our question is affirmative and we conclude that estimates of genetic diversity in COI provide an effective first diagnostic of the conservation status of exploited fish species.
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- 2022
45. Rediscovery after 25 years – first photographic documentation and DNA barcoding of the deep-sea pycnogonid species Ascorhynchus hippos Turpaeva, 1994 (Chelicerata, Pycnogonida, Ascorhynchidae) from the Kuril-Kamchatka Trench
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Lisa Wolf, Roland R. Melzer, and Tobias Lehmann
- Subjects
Ascorhynchoidea ,Arthropoda ,Ascorhynchidae ,SokhoBio Expedition 2015 ,Biota ,Ascorhynchus hippos ,COI Barcode ,Eupantopodida ,Pycnogonida ,Pantopoda ,Ascorhynchus ,Northwest Pacific Ocean ,sea spiders ,Animalia ,Ecology, Evolution, Behavior and Systematics - Abstract
The female specimen of Ascorhynchus hippos Turpaeva, 1994 was collected in 2015 during the Russian-German deep-sea expedition SokhoBio (Sea of Okhotsk Biodiversity Studies) at the abyssal western slope of the Kuril-Kamchatka Trench at a depth of 4469 m using a camera-epibenthic sledge. It is the first record of this species since the discovery of one female holotype and one male paratype in 1990. Ascorhynchus hippos is easily distinguishable from its congeners by the two prominent tubercles above the chelifore insertions, the absence of the eye tubercle and eyes, and the tubercles on the mid-dorsal trunk segments and the lateral processes. Here we present the first photographic documentation of all three known specimens of A. hippos and the COI barcode of the new specimen is also provided.
- Published
- 2022
46. Leptomorphus sevciki sp. nov., a remarkable new wasp-mimicking fungus gnat from Brunei (Diptera: Mycetophilidae).
- Author
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KASPŘÁK, David, BORKENT, Christopher J., and WAHAB, Rodzay Abdul
- Subjects
- *
MYCETOPHILIDAE , *CLASSIFICATION of insects , *DIPTERA , *GENE expression , *INSECT genetics , *NUCLEOTIDE sequencing , *INSECT morphology - Abstract
A new species of Mycetophilidae (Diptera), Leptomorphus sevciki sp. nov., is described from primary lowland rainforest in Ulu Temburong National Park in Brunei. The type specimens were reared from pupae hanging from an unidentifi ed wood encrusting fungus growing on a fallen tree. DNA sequences, including fragments of the nuclear 28S region and the mitochondrial 12S, 16S, CytB and COI (barcode region) genes, were extracted from two specimens, including the holotype. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
47. Gasterophilus intestinalis (Diptera: Oestridae) in the diaphragmatic muscle: An unusual finding.
- Author
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Cavallero, Serena, Pombi, Marco, Perrone, Vitantonio, Milardi, Giovanni Luigi, D’Amelio, Stefano, Giuliani, Carlo, and Gabrielli, Simona
- Subjects
- *
GASTEROPHILUS , *DIAPHRAGM (Anatomy) , *OESTRIDAE , *SKELETAL muscle , *AUTOPSY - Abstract
Larval forms of the bot-fly Gasterophilus are obligate parasites commonly found in the gastrointestinal tract of equids, causing intestinal myiasis. Five species are reported so far in Italy, mostly observed during necroscopy, located in different portion of gastrointestinal tract of equids: G. intestinalis , G. nasalis , G. inermis , G. pecorum and G. haemorrhoidalis . An unusual finding of larval Gasterophilus intestinalis deeply inserted into the diaphragmatic muscle is here reported. Due to the uncommon localization, to the absence of clinical signs related to myiasis and subsequent uncertainty of species identity, identification was performed using an integrative taxonomical approach combining morphology with molecular tools for confirmatory reasons. This finding adds information on migration patterns of erratic larval forms in G. intestinalis , a feature of interest as gasterophiliasis is among the less studied intestinal myiasis of horses. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
48. DNA Barcoding of Mealybugs (Hemiptera: Coccoidea: Pseudococcidae) From Mainland China.
- Author
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Xu-Bo Wang, Jiang-Tao Zhang, Jun Deng, Qing-Song Zhou, Yan-Zhou Zhang, and San-AnWu
- Subjects
- *
MEALYBUGS , *HEMIPTERA , *ORNAMENTAL plant diseases & pests , *AGRICULTURAL pests , *CYTOCHROME c - Abstract
Mealybugs (Hemiptera: Pseudococcidae) are an insect group that feeds on plant sap; many are major pests of ornamental plants and crops worldwide. The difficulty of morphological identification of mealybugs points to a need for a rapid and effective identification method, like DNA barcoding, to assist morphological taxonomy. Here, we employed diverse methods (best close match [BCM], Neighbor-Joining [NJ] tree, Barcoding with LOGic formulas [BLOG], Poisson Tree Process [PTP] Species Delimitation Method) to test the efficiency of two molecular markers (mitochondrial cytochrome c oxidase I [COI] and large ribosomal subunit gene [28S]) that could be used for species identification of 54 mealybug species that commonly occur in China. Two hundred six COI barcodes (47 species) and 242 28S sequences (53 species) were recovered from 246 individuals. In both the COI and 28S data sets, species except for Planococcus citri and P. minor were unambiguously identified by all the methods. The PTP analysis based on COI sequences generated more putative species in Antonina tesquorum, Atrococcus paludinus, and Formicococcus sp. than morphological identification. Among these three cases, the sequences of At. paludinus showed 3.55% variation at the 28S locus, possibly reflecting cryptic diversity in this taxon. Our study corroborates the utility of the COI and 28S genes in the rapid identification of mealybugs, and the barcode library we provide will create an effective identification system for mealybug pest management in China. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
49. Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation
- Author
-
European Commission, Creedy, Thomas, Andújar, Carmelo, Noguerales, Víctor, Overcast, Isaac, Papadopoulou, Anna, Morlon, Hélène, Vogler, Alfried P., Emerson, Brent C., Arribas, Paula, European Commission, Creedy, Thomas, Andújar, Carmelo, Noguerales, Víctor, Overcast, Isaac, Papadopoulou, Anna, Morlon, Hélène, Vogler, Alfried P., Emerson, Brent C., and Arribas, Paula
- Abstract
Metabarcoding of DNA extracted from community samples of whole organisms (whole organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and freshwater metazoan communities to provide rapid, accurate and high resolution data for novel molecular ecology research. The growth of this field has been accompanied by considerable development that builds on microbial metabarcoding methods to develop appropriate and efficient sampling and laboratory protocols for whole organism metazoan communities. However, considerably less attention has focused on ensuring bioinformatic methods are adapted and applied comprehensively in wocDNA metabarcoding. In this study we examined over 600 papers and identified 111 studies that performed COI metabarcoding of wocDNA. We then systematically reviewed the bioinformatic methods employed by these papers to identify the state-of-the-art. Our results show that the increasing use of wocDNA COI metabarcoding for metazoan diversity is characterised by a clear absence of bioinformatic harmonisation, and the temporal trends show little change in this situation. The reviewed literature showed (i) high heterogeneity across pipelines, tasks and tools used, (ii) limited or no adaptation of bioinformatic procedures to the nature of the COI fragment, and (iii) a worrying underreporting of tasks, software and parameters. Based upon these findings we propose a set of recommendations that we think the wocDNA metabarcoding community should consider to ensure that bioinformatic methods are appropriate, comprehensive and comparable. We believe that adhering to these recommendations will improve the long-term integrative potential of wocDNA COI metabarcoding for biodiversity science.
- Published
- 2021
50. Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation
- Author
-
Creedy, Thomas, Andújar, Carmelo, Noguerales, Víctor, Overcast, Isaac, Papadopoulou, Anna, Morlon, Hélène, Vogler, Alfried, Emerson, Brent C., Arribas, Paula, and European Commission
- Subjects
High-throughput sequencing ,Bioinformatics ,Metabarcoding ,Coi barcode ,Community ecology ,Animal communities - Abstract
Metabarcoding of DNA extracted from community samples of whole organisms (whole organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and freshwater metazoan communities to provide rapid, accurate and high resolution data for novel molecular ecology research. The growth of this field has been accompanied by considerable development that builds on microbial metabarcoding methods to develop appropriate and efficient sampling and laboratory protocols for whole organism metazoan communities. However, considerably less attention has focused on ensuring bioinformatic methods are adapted and applied comprehensively in wocDNA metabarcoding. In this study we examined over 600 papers and identified 111 studies that performed COI metabarcoding of wocDNA. We then systematically reviewed the bioinformatic methods employed by these papers to identify the state-of-the-art. Our results show that the increasing use of wocDNA COI metabarcoding for metazoan diversity is characterised by a clear absence of bioinformatic harmonisation, and the temporal trends show little change in this situation. The reviewed literature showed (i) high heterogeneity across pipelines, tasks and tools used, (ii) limited or no adaptation of bioinformatic procedures to the nature of the COI fragment, and (iii) a worrying underreporting of tasks, software and parameters. Based upon these findings we propose a set of recommendations that we think the wocDNA metabarcoding community should consider to ensure that bioinformatic methods are appropriate, comprehensive and comparable. We believe that adhering to these recommendations will improve the long-term integrative potential of wocDNA COI metabarcoding for biodiversity science., This research was supported by the iBioGen project, which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 810729.
- Published
- 2021
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