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Coastal marsh survival relies on the ability to increase elevation and offset sea level rise. It is therefore important to realistically model sediment fluxes between marshes, tidal channels, and bays as sediment availability controls accretion. Traditionally, numerical models have been calibrated and validated using in situ measurements at a few locations within the domain of interest. These datasets typically provide temporal information but lack spatial variability. This paper explores the potential of coupling numerical models with high-resolution remote sensing imagery. Products from three sensors from the NASA Delta-X airborne mission are used. Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) provides vertical water level change on the marshland and was used to adjust the bathymetry and calibrate water fluxes over the marsh. AirSWOT yields water surface elevation within bays, lakes, and channels, and was used to calibrate the Chezy bottom friction coefficient. Finally, imagery from AVIRIS-NG provides maps of total suspended solids (TSS) concentration that were used to calibrate sediment parameters of settling velocity and critical shear stress for erosion. Three numerical models were developed at different locations along coastal Louisiana using Delft3D. The coupling enabled a spatial evaluation of model performance that was not possible using simple point measurements. Overall, the study shows that calibration of numerical models and their general performance will greatly benefit from remote sensing.

We examine the evolution of the disk surrounding the Be star in the highly eccentric 10.8 yr binary system δ Scorpii over its three most recent periastron passages. V -band and B − V photometry, along with H α spectroscopy, are combined with a new set of extensive multiband polarimetry data to produce a detailed comparison of the disk's physical conditions during the time periods surrounding each closest approach of the secondary star. We use the three-dimensional Monte Carlo radiative transfer code HDUST and a smoothed particle hydrodynamics code to support our observations with models of disk evolution, discussing the behavior of the H α and He i 6678 Å lines, V -band magnitude, and polarization degree. We compare the characteristics of the disk immediately before each periastron passage to create a baseline for the unperturbed disk. We find that the extent of the H α emitting region increased between each periastron passage, and that transient asymmetries in the disk become more pronounced with each successive encounter. Asymmetries of the H α and He i 6678 Å lines in 2011 indicate that perturbations propagate inward through the disk near periastron. When the disk’s direction of orbit is opposite to that of the secondary, the parameters used in our models do not produce spiral density enhancements in the H α emitting region because the tidal interaction time is short due to the relative velocities of the disk particles with the secondary. The effects of the secondary star on the disk are short-lived and the disk shows independent evolution between each periastron event.

We apply the hydrologic landscape (HL) concept to assess the hydrologic vulnerability of the western United States (U.S.) to projected climate conditions. Our goal is to understand the potential impacts of hydrologic vulnerability for stakeholder-defined interests across large geographic areas. The basic assumption of the HL approach is that catchments that share similar physical and climatic characteristics are expected to have similar hydrologic characteristics. We use the hydrologic landscape vulnerability approach (HLVA) to map the HLVA index (an assessment of climate vulnerability) by integrating hydrologic landscapes into a retrospective analysis of historical data to assess variability in future climate projections and hydrology, which includes temperature, precipitation, potential evapotranspiration, snow accumulation, climatic moisture, surplus water, and seasonality of water surplus. Projections that are beyond 2 standard deviations of the historical decadal average contribute to the HLVA index for each metric. Separating vulnerability into these seven separate metrics allows stakeholders and/or water resource managers to have a more specific understanding of the potential impacts of future conditions. We also apply this approach to examine case studies. The case studies (Mt. Hood, Willamette Valley, and Napa–Sonoma Valley) are important to the ski and wine industries and illustrate how our approach might be used by specific stakeholders. The resulting vulnerability maps show that temperature and potential evapotranspiration are consistently projected to have high vulnerability indices for the western U.S. Precipitation vulnerability is not as spatially uniform as temperature. The highest-elevation areas with snow are projected to experience significant changes in snow accumulation. The seasonality vulnerability map shows that specific mountainous areas in the west are most prone to changes in seasonality, whereas many transitional terrains are moderately susceptible. This paper illustrates how HL and the HLVA can help assess climatic and hydrologic vulnerability across large spatial scales. By combining the HL concept and HLVA, resource managers could consider future climate conditions in their decisions about managing important economic and conservation resources.

Vertical and horizontal transport mechanisms for marine oil spills are investigated using numerical model simulations. To realistically resolve the 3-D development of a spill on the ocean surface and in the water column, recently published parameterizations for the vertical mixing of oil spills are implemented in the open-source trajectory framework OpenDrift (https://doi.org/10.5281/zenodo.1300358, last access: 7 April 2018). The parameterizations include the wave entrainment of oil, two alternative formulations for the droplet size spectra, and turbulent mixing. The performance of the integrated oil spill model is evaluated by comparing model simulations with airborne observations of an oil slick. The results show that an accurate description of a chain of physical processes, in particular vertical mixing and oil weathering, is needed to represent the horizontal spreading of the oil spill. Using ensembles of simulations of hypothetic oil spills, the general drift behavior of an oil spill during the first 10 days after initial spillage is evaluated in relation to how vertical processes control the horizontal transport. Transport of oil between the surface slick and the water column is identified as a crucial component affecting the horizontal transport of oil spills. The vertical processes are shown to control differences in the drift of various types of oil and in various weather conditions.

Biogenic emissions supply the largest fraction of non-methane volatile organic compounds (VOC) from the biosphere to the atmospheric boundary layer, and typically comprise a complex mixture of reactive terpenes. Due to this chemical complexity, achieving comprehensive measurements of biogenic VOC (BVOC) in air within a satisfactory time resolution is analytically challenging. To address this, we have developed a novel, fully automated Fast Gas Chromatography (Fast-GC) based technique to provide higher time resolution monitoring of monoterpenes (and selected other C9-C15 terpenes) during plant emission studies and in ambient air. To our knowledge, this is the first study to apply a Fast-GC based separation technique to achieve quantification of terpenes in ambient air. Three chromatography methods have been developed for atmospheric terpene analysis under different sampling scenarios. Each method facilitates chromatographic separation of selected BVOC within a significantly reduced analysis time compared to conventional GC methods, whilst maintaining the ability to quantify individual monoterpene structural isomers. Using this approach, the C9-C15 BVOC composition of single plant emissions may be characterised within a 14.5 min analysis time. Moreover, in-situ quantification of 12 monoterpenes in unpolluted ambient air may be achieved within an 11.7 min chromatographic separation time (increasing to 19.7 min when simultaneous quantification of multiple oxygenated C9-C10 terpenoids is required, and/or when concentrations of anthropogenic VOC are significant). These analysis times potentially allow for a twofold to fivefold increase in measurement frequency compared to conventional GC methods. Here we outline the technical details and analytical capability of this chromatographic approach, and present the first in-situ Fast-GC observations of 6 monoterpenes and the oxygenated BVOC (OBVOC) linalool in ambient air. During this field deployment within a suburban forest ~30 km west of central Tokyo, Japan, the Fast-GC limit of detection with respect to monoterpenes was 4–5 ppt, and the agreement between Fast-GC and PTR-MS derived total monoterpene mixing ratios was consistent with previous GC/PTR-MS comparisons. The measurement uncertainties associated with the Fast-GC quantification of monoterpenes are ≤ 12%, while larger uncertainties (up to ~25%) are associated with the OBVOC and sesquiterpene measurements.

Volatile halogenated organic compounds containing bromine and iodine, which are naturally produced in the ocean, are involved in ozone depletion in both the troposphere and stratosphere. Three prominent compounds transporting large amounts of marine halogens into the atmosphere are bromoform (CHBr3), dibromomethane (CH2Br2) and methyl iodide (CH3I). The input of marine halogens to the stratosphere has been estimated from observations and modelling studies using low-resolution oceanic emission scenarios derived from top-down approaches. In order to improve emission inventory estimates, we calculate data-based high resolution global sea-to-air flux estimates of these compounds from surface observations within the HalOcAt (Halocarbons in the Ocean and Atmosphere) database (https://halocat.geomar.de/). Global maps of marine and atmospheric surface concentrations are derived from the data which are divided into coastal, shelf and open ocean regions. Considering physical and biogeochemical characteristics of ocean and atmosphere, the open ocean water and atmosphere data are classified into 21 regions. The available data are interpolated onto a 1°×1° grid while missing grid values are interpolated with latitudinal and longitudinal dependent regression techniques reflecting the compounds' distributions. With the generated surface concentration climatologies for the ocean and atmosphere, global sea-to-air concentration gradients and sea-to-air fluxes are calculated. Based on these calculations we estimate a total global flux of 1.5/2.5 Gmol Br yr−1 for CHBr3, 0.78/0.98 Gmol Br yr−1 for CH2Br2 and 1.24/1.45 Gmol Br yr−1 for CH3I (robust fit/ordinary least squares regression techniques). Contrary to recent studies, negative fluxes occur in each sea-to-air flux climatology, mainly in the Arctic and Antarctic regions. "Hot spots" for global polybromomethane emissions are located in the equatorial region, whereas methyl iodide emissions are enhanced in the subtropical gyre regions. Inter-annual and seasonal variation is contained within our flux calculations for all three compounds. Compared to earlier studies, our global fluxes are at the lower end of estimates, especially for bromoform. An under-representation of coastal emissions and of extreme events in our estimate might explain the mismatch between our bottom-up emission estimate and top-down approaches.

Muon radiography is a technique that uses naturally occurring showers of muons (penetrating particles generated by cosmic rays) to image the interior of large-scale geological structures in much the same way as standard X-ray radiography is used to image the interior of smaller objects. Recent developments and application of the technique to terrestrial volcanoes have demonstrated that a low-power, passive muon detector can peer deep into geological structures up to several kilometers in size, and provide crisp density profile images of their interior at ten meter scale resolution. Preliminary estimates of muon production on Mars indicate that the near horizontal Martian muon flux, which could be used for muon radiography, is as strong or stronger than that on Earth, making the technique suitable for exploration of numerous high priority geological targets on Mars. The high spatial resolution of muon radiography also makes the technique particularly suited for the discovery and delineation of Martian caverns, the most likely planetary environment for biological activity. As a passive imaging technique, muon radiography uses the perpetually present background cosmic ray radiation as the energy source for probing the interior of structures from the surface of the planet. The passive nature of the measurements provides an opportunity for a low power and low data rate instrument for planetary exploration that could operate as a scientifically valuable primary or secondary instrument in a variety of settings, with minimal impact on the mission's other instruments and operation.

Abstract This study was conducted to determine what changes have occurred in an arid alluvial riparian shrub habitat in the upper Santa Ana River basin over a 20+‐yr period beginning prior to the completion of the Seven Oaks Dam in San Bernardino County, California and continuing until 8 yr after the completion of the dam in 2000 to assess the implications any changes may have on the persistence of the short‐lived Santa Ana River Woolly Star (Eriastrum densifolium ssp. sanctorum, Polemoniaceae). Small‐scale habitat changes were determined by comparing non‐native annual plant data from 1989 to 2008. Large‐scale habitat changes were determined by comparing perennial plant data from 1987 to 2008. The results of this study suggest that annual species, lichen crust, and dead shrubs are increasing, and that bare ground and live shrubs are decreasing. The older sites are also increasing in annual grass cover. Successional changes have occurred since the last significant flood event in 1969 although these changes are gradual and on a continuum, precluding a sharp distinction between different age stages. The data support previously predicted rates of succession indicating ultimate maturity within at least 100 yr. The continuation of these habitat changes will likely contribute to the decline of the Woolly Star population, particularly during future drought periods.

Tropical rainforests act as a huge contributor to the global emissions of biogenic volatile organic compounds (BVOCs). Measurements of their oxidation products, such as formaldehyde (HCHO) and glyoxal (CHOCHO), provide useful indicators of fast photochemistry occurring in the lower troposphere. However, measurements of these species in tropical forest locations are extremely limited. To redress this, HCHO and CHOCHO were measured using the long-path (LP) and multi-axis (MAX) differential optical absorption spectroscopy (DOAS) techniques above the rainforest canopy in Borneo during two campaigns in spring and summer 2008, as part of the Oxidant and Particle Photochemical Processes above a south-east Asian tropical rainforest (OP3) project. The results were compared with concurrent measurements of hydroxyl radical (OH), isoprene (C5H8) (which was the dominant organic species emitted in this forest environment), and various meteorological parameters. Formaldehyde was observed at a maximum concentration of 4.5 ppb and glyoxal at a maximum of 1.6 ppb, significantly higher than previous measurements in rural locations. A 1-D chemistry model was then used to assess the diurnal evolution of formaldehyde and glyoxal throughout the boundary layer. The results, which compare well with the LP-DOAS and MAX-DOAS observations, suggest that the majority of the glyoxal and formaldehyde is confined to the first 500 m of the boundary layer, and that the measured ratio of these species is reproduced using currently accepted product yields for the oxidation of isoprene by OH. An important conclusion is that the measured levels of glyoxal are consistent with the surprisingly high concentrations of OH measured in this environment.

Biogenic volatile organic compounds (BVOCs) emitted from tropical rainforests comprise a substantial fraction of global atmospheric VOC emissions, however there are only relatively limited measurements of these species in tropical rainforest regions. We present observations of isoprene, α-pinene, camphene, Δ-3-carene, γ-terpinene and limonene, as well as oxygenated VOCs (OVOCs) of biogenic origin such as methacrolein, in ambient air above a tropical rainforest in Malaysian Borneo during the Oxidant and Particle Photochemical Processes above a south-east Asian tropical rainforest (OP3) project in 2008. Daytime composition was dominated by isoprene, with an average mixing ratio of the order of ~1 ppb. γ-terpinene, limonene and camphene were the most abundant monoterpenes, with average daytime mixing ratios of 102, 71 and 66 ppt respectively, and with an average monoterpene toisoprene ratio of 0.3 during sunlit hours, compared to 2.0 at night. Limonene and camphene abundances were seen to be related to both temperature and light conditions. In contrast, γ-terpinene emission continued into the late afternoon/evening, under relatively low temperature and light conditions. The contributions of isoprene, monoterpenes and other classes of VOC to the volatile carbon budget and OH reactivity have been summarised for this rainforest location. We observe good agreement between surface and aircraft measurements of boundary layer isoprene and methacrolein above the natural rainforest, suggesting that the ground-level observations are broadly representative of isoprene emissions from this region.

The lifetime of methane is controlled to a very large extent by the abundance of the OH radical. The tropics are a key region for methane removal, with oxidation in the lower tropical troposphere dominating the global methane removal budget (Bloss et al., 2005). In tropical forested environments where biogenic VOC emissions are high and NOx concentrations are low, OH concentrations are assumed to be low due to rapid reactions with sink species such as isoprene. New, simultaneous measurements of OH concentrations and OH reactivity, k'OH, in a Borneo rainforest are reported and show much higher OH than predicted, with mean peak concentrations of ~2.5×106 molecule cm−3 (10 min average) observed around solar noon. Whilst j(O1D) and humidity were high, low O3 concentrations limited the OH production from O3 photolysis. Measured OH reactivity was very high, peaking at a diurnal average of 29.1±8.5 s−1, corresponding to an OH lifetime of only 34 ms. To maintain the observed OH concentration given the measured OH reactivity requires a rate of OH production approximately 10 times greater than calculated using all measured OH sources. A test of our current understanding of the chemistry within a tropical rainforest was made using a detailed zero-dimensional model to compare with measurements. The model over-predicted the observed HO2 concentrations and significantly under-predicted OH concentrations. Inclusion of an additional OH source formed as a recycled product of OH initiated isoprene oxidation improved the modelled OH agreement but only served to worsen the HO2 model/measurement agreement. To replicate levels of both OH and HO2, a process that recycles HO2 to OH is required; equivalent to the OH recycling effect of 0.74 ppbv of NO. This recycling step increases OH concentrations by 88 % at noon and has wide implications, leading to much higher predicted OH over tropical forests, with a concomitant reduction in the CH4 lifetime and increase in the rate of VOC degradation.

Very short-lived halocarbons (VSLH) such as CH3I, CH2Br2 and CHBr3 provide an important source of reactive halogens to the atmosphere, however high spatial and seasonal variability in their ambient mixing ratios and sea-air fluxes gives rise to considerable uncertainty in global scale emission estimates. One solution to improve global flux estimates is to combine the multitude of individually published datasets to produce a database of collated global halocarbon observations. Some progress towards this has already been achieved through the HalOcAt (Halocarbons in the Ocean and Atmosphere) database initiative, but the absence of a common calibration scale for very short-lived halocarbons makes it difficult to distinguish true environmental variations from artefacts arising from differences between calibration methodologies. As such, the lack of inter-calibrations for both air and seawater measurements of very short-lived halocarbons has been identified as a major limitation to current estimations of the global scale impact of these reactive trace gases. Here we present the key findings from the first national UK inter-laboratory comparison for calibrations of the halocarbons CH3I, CH2Br2 and CHBr3. The aim of this inter-calibration was to provide transparency between halocarbon calibrations from major UK research institutions, an important step towards enabling all measurements from these institutions to be treated as one coherent integrated dataset for global source term parameterisations.

Iodine emissions from the dominant six macroalgal species in the coastal regions around Roscoff, France, have been modelled to support the Reactive Halogens in the Marine Boundary Layer Experiment (RHaMBLe) undertaken in September 2006. A two-dimensional model is used to explore the relationship between geographically resolved regional emissions (based on maps of seaweed beds in the area and seaweed I2 emission rates previously measured in the laboratory) and in situ point and line measurements of I2 performed respectively by a broadband cavity ringdown spectroscopy (BBCRDS) instrument sited on the shoreline and a long-path differential optical absorption spectroscopy (LP-DOAS) instrument sampling over an extended light path to an off-shore island. The modelled point and line I2 concentrations compare quantitatively with BBCRDS and LP-DOAS measurements, and provide a link between emission fields and the different measurement geometries used to quantify atmospheric I2 concentrations during RHaMBLe. Total I2 emissions over the 100 km2 region around Roscoff are calculated to be 1.7×1019 molecules per second during the lowest tides. During the night, the model replicates I2 concentrations up to 50 pptv measured along the LP-DOAS instrument's line of sight, and predicts spikes of several hundred pptv in certain conditions. Point I2 concentrations up to 50 pptv are also calculated at the measurement site, in broad agreement with the BBCRDS observations. Daytime measured concentrations of I2 at the site correlate with modelled production and transport processes. However substantial recycling of the photodissociated I2 is required for the model to quantitatively match measured concentrations. This result corroborates previous modelling of iodine and NOx chemistry in the semi-polluted marine boundary layer which proposed a mechanism for recycling I2 via the formation, transport and subsequent reactions of the IONO2 reservoir compound. The methodology presented in this paper provides a tool for linking spatially distinct measurements to inhomogeneous and temporally varying emission fields.

Although tropospheric reactive halogen chemistry is well studied in coastal and polar environments, the presence of halogens over the open ocean environment has not been widely reported. The impacts of halogens on the tropical open ocean marine boundary layer (MBL), in particular, are not well characterised. This paper describes observations of iodine monoxide (IO) and bromine oxide (BrO) over eight months in the tropical open ocean MBL, on the north-eastern side of São Vicente (Cape Verde Islands, 16.85° N, 24.87° W). The highest BrO mixing ratio observed was 5.6±1 pmol mol−1, while the maximum observed IO mixing ratio was 3.1±0.4 pmol mol−1. The average values seen between 09:00–17:00 GMT were ~2.8 pmol mol−1 for BrO and ~1.5 pmol mol−1 for IO; these averages showed little variability over the entire campaign from November 2006 to June 2007. A 1-dimensional chemistry and transport model is used to study the evolution of iodine species and quantify the combined impact of iodine and bromine chemistry on the oxidising capacity of the MBL. It appears that the measured fluxes of iodocarbons are insufficient to account for the observed levels of IO, and that an additional I atom source is required, possibly caused by the deposition of O3 onto the ocean surface in the presence of solar radiation. Modelling results also show that the O3 depletion observed at Cape Verde cannot be explained in the absence of halogen chemistry, which contributes ~45% of the observed O3 depletion at the height of measurements (10 m) during summer. The model also predicts that halogens decrease the hydroperoxy radical (HO2) concentration by ~14% and increase the hydroxyl radical (OH) concentration by ~13% near the ocean surface. The oxidation of dimethyl sulphide (DMS) by BrO takes place at a comparable rate to oxidation by OH in this environment. Finally, the potential of iodine chemistry to form new particles is explored and conditions under which particle formation could be important in the remote MBL are discussed.

This paper presents a summary of the measurements made during the heavily-instrumented Reactive Halogens in the Marine Boundary Layer (RHaMBLe) coastal study in Roscoff on the North West coast of France throughout September 2006. It was clearly demonstrated that iodine-mediated coastal particle formation occurs, driven by daytime low tide emission of molecular iodine, I2, by macroalgal species fully or partially exposed by the receding waterline. Ultrafine particle concentrations strongly correlate with the rapidly recycled reactive iodine species, IO, produced at high concentrations following photolysis of I2. The heterogeneous macroalgal I2 sources lead to variable relative concentrations of iodine species observed by path-integrated and in situ measurement techniques. Apparent particle emission fluxes were associated with an enhanced apparent depositional flux of ozone, consistent with both a direct O3 deposition to macroalgae and involvement of O3 in iodine photochemistry and subsequent particle formation below the measurement height. The magnitude of the particle formation events was observed to be greatest at the lowest tides with the highest concentrations of ultrafine particles growing to the largest sizes, probably by the condensation of anthropogenically-formed condensable material. At such sizes the particles should be able to act as cloud condensation nuclei at reasonable atmospheric supersaturations.

The NERC UK SOLAS-funded Reactive Halogens in the Marine Boundary Layer (RHaMBLe) programme comprised three field experiments. This manuscript presents an overview of the measurements made within the two simultaneous remote experiments conducted in the tropical North Atlantic in May and June 2007. Measurements were made from two mobile and one ground-based platforms. The heavily instrumented cruise D319 on the RRS Discovery from Lisbon, Portugal to São Vicente, Cape Verde and back to Falmouth, UK was used to characterise the spatial distribution of boundary layer components likely to play a role in reactive halogen chemistry. Measurements onboard the ARSF Dornier aircraft were used to allow the observations to be interpreted in the context of their vertical distribution and to confirm the interpretation of atmospheric structure in the vicinity of the Cape Verde islands. Long-term ground-based measurements at the Cape Verde Atmospheric Observatory (CVAO) on São Vicente were supplemented by long-term measurements of reactive halogen species and characterisation of additional trace gas and aerosol species during the intensive experimental period. This paper presents a summary of the measurements made within the RHaMBLe remote experiments and discusses them in their meteorological and chemical context as determined from these three platforms and from additional meteorological analyses. Air always arrived at the CVAO from the North East with a range of air mass origins (European, Atlantic and North American continental). Trace gases were present at stable and fairly low concentrations with the exception of a slight increase in some anthropogenic components in air of North American origin, though NOx mixing ratios during this period remained below 20 pptv (note the non-IUPAC adoption in this manuscript of pptv and ppbv, equivalent to pmol mol−1 and nmol mol−1 to reflect common practice). Consistency with these air mass classifications is observed in the time series of soluble gas and aerosol composition measurements, with additional identification of periods of slightly elevated dust concentrations consistent with the trajectories passing over the African continent. The CVAO is shown to be broadly representative of the wider North Atlantic marine boundary layer; measurements of NO, O3 and black carbon from the ship are consistent with a clean Northern Hemisphere marine background. Aerosol composition measurements do not indicate elevated organic material associated with clean marine air. Closer to the African coast, black carbon and NO levels start to increase, indicating greater anthropogenic influence. Lower ozone in this region is possibly associated with the increased levels of measured halocarbons, associated with the nutrient rich waters of the Mauritanian upwelling. Bromide and chloride deficits in coarse mode aerosol at both the CVAO and on D319 and the continuous abundance of inorganic gaseous halogen species at CVAO indicate significant reactive cycling of halogens. Aircraft measurements of O3 and CO show that surface measurements are representative of the entire boundary layer in the vicinity both in diurnal variability and absolute levels. Above the inversion layer similar diurnal behaviour in O3 and CO is observed at lower mixing ratios in the air that had originated from south of Cape Verde, possibly from within the ITCZ. ECMWF calculations on two days indicate very different boundary layer depths and aircraft flights over the ship replicate this, giving confidence in the calculated boundary layer depth.

Atmospheric composition and chemistry above tropical rainforests is currently not well established, particularly for south-east Asia. In order to examine our understanding of chemical processes in this region, the performance of a box model of atmospheric boundary layer chemistry is tested against measurements made at the top of the rainforest canopy near Danum Valley, Malaysian Borneo. Multi-variate optimisation against ambient concentration measurements was used to estimate average canopy-scale emissions for isoprene, total monoterpenes and nitric oxide. The excellent agreement between estimated values and measured fluxes of isoprene and total monoterpenes provides confidence in the overall modelling strategy, and suggests that this method may be applied where measured fluxes are not available, assuming that the local chemistry and mixing are adequately understood. The largest contributors to the optimisation cost function at the point of best-fit are OH (29%), NO (22%) and total peroxy radicals (27%). Several factors affect the modelled VOC chemistry. In particular concentrations of methacrolein (MACR) and methyl-vinyl ketone (MVK) are substantially overestimated, and the hydroxyl radical (OH) concentration is substantially underestimated; as has been seen before in tropical rainforest studies. It is shown that inclusion of dry deposition of MACR and MVK and wet deposition of species with high Henry's Law values substantially improves the fit of these oxidised species, whilst also substantially decreasing the OH sink. Increasing OH production arbitrarily, through a simple OH recycling mechanism , adversely affects the model fit for volatile organic compounds (VOCs). Given the constraints on isoprene flux provided by measurements, a substantial decrease in the rate of reaction of VOCs with OH is the only remaining option to explain the measurement/model discrepancy for OH. A reduction in the isoprene+OH rate constant of 50%, in conjunction with increased deposition of intermediates and some modest OH recycling, is able to produce both isoprene and OH concentrations within error of those measured. Whilst we cannot rule out an important role for missing chemistry, particularly in areas of higher isoprene flux, this study demonstrates that the inadequacies apparent in box and global model studies of tropical VOC chemistry may be more strongly influenced by representation of detailed physical and micrometeorological effects than errors in the chemical scheme.

Atmospheric concentrations of the volatile reactive iodocarbons C2H5I, 1-C3H7I, 2-C3H7I, CH2ICl, CH2IBr, CH2I2 and bromocarbons CH2Br2 and CHBr3 were determined by GC/MS analysis of marine boundary layer air at Roscoff, Brittany on the northwest coast of France during September 2006. Comparison with other coastal studies suggests that emissions of these trace gases are strongly influenced by site topography, seaweed populations and distribution, as well as wind speed and direction and tide height. Concentrations of the very short-lived dihalomethanes CH2IBr and CH2I2 in particular showed evidence of tidal dependence, with higher concentrations observed at low tide during maximum exposure of seaweed beds. We also present a limited number of halocarbon measurements in surface seawater and estimate sea-air fluxes based on these and simultaneous air measurements. CH2Br2 and CHBr3 were strongly correlated both in air and in seawater, with CH2Br2/CHBr3 ratios of 0.19 in air and 0.06 in water. The combined midday I atom flux from the photolabile diahlomethanes CH2I2, CH2IBr and CH2ICl of ~5×103 molecules cm−3 s−1 is several orders of magnitude lower than the estimated I atom flux from I2 based on coinciding measurements at the same site, which indicates that at Roscoff the major I atom precursor was I2 rather than reactive iodocarbons.

Very short lived halocarbons (VSLH) play an important role in the transport of halogen atoms to the troposphere and lower stratosphere. Here we describe the development of a relaxed eddy accumulation system using gas chromatography coupled to a mass spectrometer (REA-GC/MS) to determine surface fluxes of VSLH with a time resolution of about 0.5 h. Laboratory tests showed that use of a common inlet for upward, downward and deadband flow paths resulted in mixing of upward and downward moving air masses, therefore we recommend the use of separate inlets. The modified system underwent field trials at Mace Head on the west coast of Ireland, where there are dense kelp beds known to emit a range of halocarbons. Over a 16 h period in mid-September 2007, the mean fluxes obtained were 16.1±1.8, 4.0±0.54 and 1.2±0.2 nmol m−2 day−1 for CH2Br2 CH2ICl and CH2IBr, respectively.

Air-sea fluxes and bulk seawater and atmospheric concentrations of bromoform (CHBr3) and dibromomethane (CH2Br2) were measured during two research cruises in the northeast Atlantic (53–59° N, June–July 2006) and tropical eastern Atlantic Ocean including over the African coastal upwelling system (16–35° N May–June 2007). Saturations and sea-air fluxes of these compounds generally decreased in the order coastal > upwelling > shelf > open ocean, and outside of coastal regions, a broad trend of elevated surface seawater concentrations with high chlorophyll-a was observed. We show that upwelling regions (coastal and equatorial) represent regional hot spots of bromocarbons, but are probably not of major significance globally, contributing at most a few percent of the total global emissions of CHBr3 and CH2Br2. From limited data from eastern Atlantic coastlines, we tentatively suggest that globally, coastal oceans (depth −1 of CHBr3, excluding influences from anthropogenic sources such as coastal power stations. This flux estimate is close to current estimates of the total open ocean source. We also show that the concentration ratio of CH2Br2/CHBr3 in seawater is a strong function of concentration (and location), with a lower CH2Br2/CHBr3 ratio found in coastal regions near to macroalgal sources.