298 results on '"C. Dent"'
Search Results
2. Cryo-EM reconstruction of the human 40S ribosomal subunit at 2.15 Å resolution
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Simone Pellegrino, Kyle C Dent, Tobias Spikes, Alan J Warren, Pellegrino, Simone [0000-0001-6302-2774], Warren, Alan J [0000-0001-9277-4553], and Apollo - University of Cambridge Repository
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Ribosome Subunits, Small, Eukaryotic ,Ribosomal Proteins ,RNA, Ribosomal ,Cryoelectron Microscopy ,Genetics ,RNA, Ribosomal, 18S ,Humans ,Ribosomes - Abstract
The chemical modification of ribosomal RNA and proteins is critical for ribosome assembly, for protein synthesis and may drive ribosome specialisation in development and disease. However, the inability to accurately visualise these modifications has limited mechanistic understanding of the role of these modifications in ribosome function. Here we report the 2.15 Å resolution cryo-EM reconstruction of the human 40S ribosomal subunit. We directly visualise post-transcriptional modifications within the 18S rRNA and four post-translational modifications of ribosomal proteins. Additionally, we interpret the solvation shells in the core regions of the 40S ribosomal subunit and reveal how potassium and magnesium ions establish both universally conserved and eukaryote-specific coordination to promote the stabilisation and folding of key ribosomal elements. This work provides unprecedented structural details for the human 40S ribosomal subunit that will serve as an important reference for unravelling the functional role of ribosomal RNA modifications.
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- 2023
3. CO2 and hydrography acquired by autonomous surface vehicles from the Atlantic Ocean to the Mediterranean Sea: data correction and validation
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R. Martellucci, M. Giani, E. Mauri, L. Coppola, M. Paulsen, M. Fourrier, S. Pensieri, V. Cardin, C. Dentico, R. Bozzano, C. Cantoni, A. Lucchetta, A. Izquierdo, M. Bruno, and I. Skjelvan
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The ATL2MED demonstration experiment involved two autonomous surface vehicles from Saildrone Inc. (SD) which travelled a route from the eastern tropical North Atlantic to the Adriatic Sea between October 2019 and July 2020 (see Table A6). This 9-month experiment in a transition zone between the temperate and tropical belts represents a major challenge for the SD's operations. The sensors on board were exposed to varying degrees of degradation and biofouling depending on the geographical area and season, which led to a deterioration in the measurements. As a result, some maintenance measures were required during the mission. We address the difficulty of correcting the data during a period of COVID-19 restrictions, which significantly reduced the number of discrete samples planned for the SD salinity and dissolved oxygen validation. This article details alternative correction methods for salinity and dissolved oxygen. Due to the lack of in situ data, model products have been used to correct the salinity data acquired by the SD instruments, and then the resulting corrected salinity was validated with data from fixed ocean stations, gliders, and Argo floats. In addition, dissolved oxygen data acquired from the SD instruments after correction using air oxygen measurements were tested and found to be coherent with the variation in oxygen concentrations expected from changes in temperature and phytoplankton abundance (from chlorophyll a). The correction methods are relevant and useful in situations where validation capabilities are lacking, which was the case during the ATL2MED demonstration experiment. For future experiments, a more frequent sample collection would improve the data qualification and validation.
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- 2024
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4. The chemical landscape of the human ribosome at 1.67 Å resolution
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Alexandre Faille, Kyle C. Dent, Simone Pellegrino, Pekka Jaako, and Alan J Warren
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Article - Abstract
The ability of ribosomes to translate the genetic code into protein requires a finely tuned ion and solvent ecosystem. However, the lack of high-resolution structures has precluded accurate positioning of all the functional elements of the ribosome and limited our understanding of the specific role of ribosomal RNA chemical modifications in modulating ribosome function in health and disease. Here, using a new sample preparation methodology based on functionalised pristine graphene-coated grids, we solve the cryo-EM structure of the human large ribosomal subunit to a resolution of 1.67 Å. The accurate assignment of water molecules, magnesium and potassium ions in our model highlights the fundamental biological role of ribosomal RNA methylation in harnessing unconventional carbon-oxygen hydrogen bonds to establish chemical interactions with the environment and fine-tune the functional interplay with tRNA. In addition, the structures of three translational inhibitors bound to the human large ribosomal subunit at better than 2 Å resolution provide mechanistic insights into how three key druggable pockets of the ribosome are targeted and illustrate the potential of this methodology to accelerate high-throughput structure-based design of anti-cancer therapeutics.
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- 2023
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5. Endocrine Surgery
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Paul C. Dent and Simon Chang-Hao Tsao
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- 2023
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6. The Effects of Foodways Practices on Nutritional Availability
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SOPHIA C. DENT, DALE L. HUTCHINSON, and MARISSA W. BRUCE
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- 2022
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7. Employing Local Food Resources for Dietary Reconstruction via Stable Isotope Analysis
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SOPHIA C. DENT and DALE L. HUTCHINSON
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- 2022
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8. The intergenerational effects of parental physical activity on offspring brain and neurocognition in humans: A scoping review
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Sarah R. Valkenborghs, Paige C. Dent, and Chelsea M. Stillman
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Male ,Parents ,Fathers ,Behavioral Neuroscience ,Neuropsychology and Physiological Psychology ,Pregnancy ,Cognitive Neuroscience ,Humans ,Brain ,Female ,Exercise ,Head - Abstract
Animal models suggest physical activity (PA) has intergenerational effects on brain health and neurocognition. This scoping review compiles the human literature in this area, identifies knowledge gaps, and makes recommendations for future research.We systematically searched for experimental or observational studies conducted in humans, published in English, and reporting parental PA exposure (preconception or prenatal) and subsequent offspring brain and neurocognition. Two reviewers independently screened studies according to predetermined inclusion criteria.Fourteen articles were included (four experimental and 10 observational). All studies reported maternal characteristics, whereas only one (7%) study reported paternal characteristics (but not paternal PA). Prenatal maternal PA exposure was examined in 10 (71%) studies, while preconception and prenatal PA exposure was examined in four (29%) studies. Maternal PA exposure was positively related to offspring brain and neurocognitive development in most studies.Little is known about the intergenerational effects of parental PA on offspring brain and neurocognition in humans, particularly paternal preconception PA. More experimental studies with longer offspring follow-up and more objective and/or mechanistic assessments are required.HIGHLIGHTSAnimal models suggest physical activity has intergenerational neurobiological effectsAll observational human studies report a positive relationship between maternal physical activity and offspring brain and neurocognitionMost experimental human studies report no effects of maternal physical activity on offspring brain and neurocognition
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- 2022
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9. New Free Trade Agreements in the Asia-Pacific
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C. Dent
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- 2006
10. Asia-Pacific Economic and Security Co-operation: New Regional Agendas
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C. Dent
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- 2003
11. Molecular responses of Prunus avium (wild cherry) embryonic axes to temperatures affecting dormancy
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William E. Finch-Savage, John R. Stephen, and Katherine C. Dent
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Differential display ,Physiology ,Seed dormancy ,Plant Science ,Biology ,Cell biology ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Complementary DNA ,Gene expression ,Dormancy ,Initiation factor ,Abscisic acid ,Gene - Abstract
Summary • Seed dormancy and dormancy cycling are poorly understood at the molecular level, but are central to plant community development. This study focuses on the embryonic axes of deeply dormant seeds of Prunus avium (wild cherry). • Rapid amplification of cDNA ends (RACE), differential display and quantitative PCR were used to recover and monitor expression of cDNAs. • cDNAs similar to two dormancy-imposing genes were isolated; a serine/threonine protein-phosphatase 2C homologous to ABSCISIC ACID INSENSITIVE 1 and 2 (Pa-PP2C1), and the transcription factor ABSCISIC ACID INSENSITIVE 3 (Pa-ABI3). Two germination-associated cDNAs were recovered; aconitase (Pa-ACO1) and eukaryotic translation initiation factor 3 subunit 8 (Pa-eIF3 SUBUNIT 8). Cold-treatment reduced expression of Pa-PP2C1 and Pa-ABI3, consistent with roles in establishing primary dormancy; neither was induced by imposition of secondary dormancy. Expression of these genes was distinct from expression of Pa-ACO1 and Pa-eIF3-SUBUNIT 8. • Results were consistent with a role for ABI1/ABI2 and ABI3 homologues in primary dormancy of P. avium embryonic axes, but not secondary dormancy as control of germination appeared overridden by the tissues surrounding the embryo.
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- 2021
12. Pathways linking activity, adiposity, and inflammation to bone mineral density in women and men from NHANES 2007 to 2010
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Sophia C Dent, Steph M. Berger, and Jacob S Griffin
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Adult ,Male ,musculoskeletal diseases ,Waist ,Bone density ,Osteoporosis ,Physiology ,030209 endocrinology & metabolism ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Bone Density ,Genetics ,Humans ,Medicine ,0601 history and archaeology ,Young adult ,Exercise ,Ecology, Evolution, Behavior and Systematics ,Adiposity ,Aged ,Femoral neck ,Aged, 80 and over ,Inflammation ,Bone mineral ,060101 anthropology ,Femur Neck ,business.industry ,Lumbosacral Region ,06 humanities and the arts ,Middle Aged ,Anthropometry ,Nutrition Surveys ,Circumference ,medicine.disease ,Spine ,United States ,medicine.anatomical_structure ,Anthropology ,Female ,Sedentary Behavior ,Anatomy ,business - Abstract
Objectives Age, sedentary activity, central adiposity, and inflammation have all been independently associated with bone mineral density (BMD). We assessed how the effects of sedentary activity and central adiposity on BMD of the lumbar spine and femoral neck change across early to late adulthood and whether these relationships are mediated by inflammation. Methods We analyzed data from 7135 women and men 20 years of age and older from NHANES 2007 to 2010. Anthropometrics, sedentary activity (min/day), serum CRP (mg/dl), and BMD (gm/cm2 measured by DXA scans) at the femoral neck and lumbar spine. Data were compared by age and sex groups and through causal mediation analysis. Results The effect of waist circumference on BMD was significantly mediated by serum CRP at both skeletal sites in men and at the femoral neck in women. Sedentary activity did not have a direct relationship to BMD but was mediated by waist circumference in men. Least square means differed significantly by sex and age groups with a general age-related decline in BMD at both skeletal sites. Conclusions We found that central adiposity, independent of overall body size and composition as measured through BMI, has an inverse relationship with BMD that is mediated by serum CRP. In addition, the negative impact of increased sedentism acted through changes in central adiposity (waist circumference) but only in men. Although low bone density and osteoporosis are often considered degenerative diseases that primarily impact postmenopausal women, our findings show that sedentary activity and central adiposity impact bone density beginning in early adulthood in both women and men.
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- 2021
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13. Biocultural pathways linking periodontal disease expression to food insecurity, immune dysregulation, and nutrition
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Jacob S Griffin, Sophia C Dent, and Steph M. Berger
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Vitamin ,Adult ,Male ,National Health and Nutrition Examination Survey ,Adolescent ,Nutritional Status ,030209 endocrinology & metabolism ,Context (language use) ,medicine.disease_cause ,03 medical and health sciences ,chemistry.chemical_compound ,Young Adult ,0302 clinical medicine ,Immune system ,Periodontal disease ,Genetics ,medicine ,Humans ,0601 history and archaeology ,Child ,Ecology, Evolution, Behavior and Systematics ,Periodontal Diseases ,Aged ,Aged, 80 and over ,060101 anthropology ,business.industry ,Immunity ,06 humanities and the arts ,Immune dysregulation ,Middle Aged ,Models, Theoretical ,Micronutrient ,Nutrition Surveys ,United States ,Chronic infection ,Food Insecurity ,chemistry ,Anthropology ,Immunology ,Female ,Anatomy ,business - Abstract
Objectives In this article, we test theoretical pathways leading to and resulting from periodontal disease to better understand how periodontal disease, which is measurable in both past and present populations, integrates biocultural context and affects whole-body physiology. Methods We use data from the National Health and Nutrition Examination Survey (NHANES) 2003-2004 and logistic and linear regressions to test pathways linking psychosocial stress to periodontal disease, and periodontal disease to serum vitamin C levels. We then use causal mediation analysis to test the role of mediating variables in these pathways (n = 1853 individuals). Results Food insecurity was positively associated with periodontal disease and negatively associated with serum counts of C-reactive protein (CRP) and neutrophils. Neither CRP nor neutrophils significantly mediated the relationship between food insecurity and periodontal disease. Periodontal disease was negatively associated with serum vitamin C levels and positively associated with neutrophil counts. Neutrophils may mediate the relationship between periodontal disease and vitamin C. Conclusions We identify two main findings: (a) periodontal disease contributes to and may result from immune dysregulation, particularly of neutrophils, and (b) an immune response to chronic infection such as periodontal disease is metabolically expensive for the body to maintain and likely depletes serum micronutrient levels. Both micronutrient status and serum neutrophil counts affect multiple skeletal and physiological phenotypes and thus position periodontal disease in whole-body context.
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- 2020
14. Phenotypes and pathways: Working toward an integrated skeletal biology in biological anthropology
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Steph M. Berger, Sophia C. Dent, and Jacob S Griffin
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Evolutionary biology ,Anthropology ,Skeletal biology ,Biological anthropology ,Genetics ,Anatomy ,Biology ,Phenotype ,Ecology, Evolution, Behavior and Systematics - Published
- 2020
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15. Older and slower: The startup deficit’s lasting effects on aggregate productivity growth
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David Berger, Titan Alon, Benjamin Pugsley, and Robert C. Dent
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Economics and Econometrics ,Labour economics ,0502 economics and business ,05 social sciences ,Economics ,Entry rate ,Age distribution ,050207 economics ,Total factor productivity ,050203 business & management ,Finance ,Aggregate productivity - Abstract
Declining firm entry and the aging incumbent firms have meaningful implications for sluggish U.S. aggregate productivity growth. We provide a framework to characterize the contributions to industry productivity growth across the firm age distribution then apply it to firm-level Census data. Several findings emerge: the relationship between firm age and productivity growth is downward sloping and convex; the magnitudes are substantial but fade quickly; selection and reallocation predominantly drive higher productivity growth of young firms. Our results suggest a cumulative drag on aggregate productivity of 3.1% since 1980 and are expanded upon with an IV strategy and standard model of firm dynamics.
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- 2018
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16. Litigation in thyroid surgery in England
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Nigel M Bagnall and Paul C Dent
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medicine.medical_specialty ,Delayed Diagnosis ,Iatrogenic Disease ,Intraoperative Awareness ,State Medicine ,03 medical and health sciences ,Postoperative Complications ,0302 clinical medicine ,medicine ,Humans ,Diagnostic Errors ,030223 otorhinolaryngology ,health care economics and organizations ,Retrospective Studies ,Postoperative Care ,Jurisprudence ,Informed Consent ,business.industry ,Malpractice ,Thyroid ,Liability, Legal ,General Medicine ,Surgery ,medicine.anatomical_structure ,England ,030220 oncology & carcinogenesis ,Recurrent Laryngeal Nerve Injuries ,Thyroidectomy ,Burns ,business - Abstract
Thyroid surgery has the potential for significant life-changing postoperative complications. Since 1995, the NHS Litigation Authority has handled litigation claims in England. This article reviews all thyroid surgery litigation claims between 1995 and 2012 and looks at potential strategies to minimize future claims.
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- 2017
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17. Training Martians and Venusians on Jupiter
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Stella Vig and Paul C Dent
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Jupiter ,03 medical and health sciences ,Gender equity ,Medical education ,0302 clinical medicine ,020205 medical informatics ,0202 electrical engineering, electronic engineering, information engineering ,Medical training ,030212 general & internal medicine ,02 engineering and technology ,Psychology ,Training (civil) - Abstract
The challenge of diversification in the medical workforce cannot be ignored. Society and societal norms have also progressed at pace and terms and attitudes that were acceptable are now outdated. Trainers must be professionalised to ensure that training of trainees remains an exemplar role. It is accepted that boys and girls learn differently but have the same potential. Equity of opportunity ensures that the modern society retains and values all genders. By exploring whether these differences continue into the post-graduate education system, the medical profession can accommodate and mitigate to ensure equity. This chapter will explore the need for professional trainers, the educational needs of the modern-day medical trainee, and the challenges that need to be accommodated to ensure that the medical workforce retains a passion long into their careers.
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- 2020
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18. The Role of Startups in Structural Transformation
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Robert C. Dent, Benjamin Pugsley, Fatih Karahan, and Ays ¸ egül Sahin
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Economics and Econometrics ,Labour economics ,050208 finance ,0502 economics and business ,05 social sciences ,Economics ,050207 economics ,Economic system ,Structural transformation - Abstract
The U.S. economy has been going through a striking structural transformation--the secular reallocation of employment across sectors--over the past several decades. We propose a decomposition framework to assess the contributions of various margins of firm dynamics to this shift. Using firm-level data, we find that at least 50 percent of the adjustment has been taking place along the entry margin, due to sectors receiving different shares of startup employment than their employment shares. The rest is mostly due to life cycle differences across sectors. Declining overall entry has a small but growing effect of dampening structural transformation.
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- 2016
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19. Local environmental context drives heterogeneity of early succession dynamics in alpine glacier forefields
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A. Bayle, B. Z. Carlson, A. Zimmer, S. Vallée, A. Rabatel, E. Cremonese, G. Filippa, C. Dentant, C. Randin, A. Mainetti, E. Roussel, S. Gascoin, D. Corenblit, and P. Choler
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Ecology ,QH540-549.5 ,Life ,QH501-531 ,Geology ,QE1-996.5 - Abstract
Glacier forefields have long provided ecologists with a model to study patterns of plant succession following glacier retreat. While plant-survey-based approaches applied along chronosequences provide invaluable information on plant communities, the “space-for-time” approach assumes environmental uniformity and equal ecological potential across sites and does not account for spatial variability in initial site conditions. Remote sensing provides a promising avenue for assessing plant colonization dynamics using a so-called “real-time” approach. Here, we combined 36 years of Landsat imagery with extensive field sampling along chronosequences of deglaciation for eight glacier forefields in the southwestern European Alps to investigate the heterogeneity of early plant succession dynamics. Based on the two complementary and independent approaches, we found strong variability in the time lag between deglaciation and colonization by plants and in subsequent growth rates and in the composition of early plant succession. All three parameters were highly dependent on the local environmental context, i.e., neighboring vegetation cover and energy availability linked to temperature and snowmelt gradients. Potential geomorphological disturbance did not emerge as a strong predictor of succession parameters, which is perhaps due to insufficient spatial resolution of predictor variables. Notably, the identity of pioneer plant species was highly variable, and initial plant community composition had a much stronger influence on plant assemblages than elapsed time since deglaciation. Overall, both approaches converged towards the conclusion that early plant succession is not stochastic as previous authors have suggested but rather determined by local ecological context. We discuss the importance of scale in deciphering the complexity of plant succession in glacier forefields and provide recommendations for improving botanical field surveys and using Landsat time series in glacier forefield systems. Our work demonstrates complementarity between remote sensing and field-based approaches for both understanding and predicting future patterns of plant succession in glacier forefields.
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- 2023
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20. Colocalization of thin-walled dome regions with low hemodynamic wall shear stress in unruptured cerebral aneurysms
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Laith M Kadasi, Adel M. Malek, and Walter C. Dent
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medicine.diagnostic_test ,business.industry ,Cerebral arteries ,Hemodynamics ,Colocalization ,Thin walled ,Anatomy ,medicine.disease ,Dome (geology) ,Aneurysm ,cardiovascular system ,medicine ,Shear stress ,business ,Cerebral angiography - Abstract
Object Wall shear stress (WSS) plays a role in regulating endothelial function and has been suspected in cerebral aneurysm rupture. The aim of this study was to evaluate the spatial relationship between localized thinning of the aneurysm dome and estimated hemodynamic factors, hypothesizing that a low WSS would correlate with aneurysm wall degeneration. Methods Steady-state computational fluid dynamics analysis was performed on 16 aneurysms in 14 patients based on rotational angiographic volumes to derive maps of WSS, its spatial gradient (WSSG), and pressure. Local dome thickness was estimated categorically based on tissue translucency from high-resolution intraoperative microscopy findings. Each computational model was oriented to match the corresponding intraoperative view and numerically sampled in thin and normal adjacent dome regions, with controls at the neck and parent vessel. The pressure differential was computed as the difference between aneurysm dome points and the mean neck pressure. Pulsatile time-dependent confirmatory analysis was carried out in 7 patients. Results Matched-pair analysis revealed significantly lower levels of WSS (0.381 Pa vs 0.816 Pa; p < 0.0001) in thin-walled dome areas than in adjacent baseline thickness regions. Similarly, log WSSG and log WSS × WSSG were both lower in thin regions (both p < 0.0001); multivariate logistic regression analysis identified lower WSS and higher pressure differential as independent correlates of lower wall thickness with an area under the curve of 0.80. This relationship was observed in both steady-state and time-dependent pulsatile analyses. Conclusions Thin-walled regions of unruptured cerebral aneurysms colocalize with low WSS, suggesting a cellular mechanotransduction link between areas of flow stasis and aneurysm wall thinning.
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- 2013
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21. Critical step-by-step approaches toward correlative fluorescence/soft X-ray cryo-microscopy of adherent mammalian cells
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Kay Grünewald, Christoph Hagen, and Kyle C. Dent
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Correlative ,Soft x ray ,law ,Resolution (electron density) ,Microscopy ,Biophysics ,Fluorescence microscope ,Nanotechnology ,Biology ,Fluorescence ,High absorption ,Synchrotron ,law.invention - Abstract
Soft X-ray cryo-microscopy/tomography with its extraordinary capability to map vitreous cells with high absorption contrast in their full three-dimensional extent, and at a resolution exceeding super-resolution fluorescence microscopy, is a valuable tool for integrative structural cell biology. Focusing on cell biological applications, its ongoing methodological development gained momentum by combining it with fluorescence cryo-microscopy, thus correlating highly resolved structural and specific information in situ. In this chapter, we provide a basic description of the techniques, as well as an overview of equipment and methods available to carry out correlative soft X-ray cryo-tomography experiments on frozen-hydrated cells grown on a planar support. Our aim here is to suggest ways that biologically representative data can be recorded to the highest possible resolution, while also keeping in mind the limitations of the technique during data acquisition and analysis. We have written from our perspective as electron cryo-microscopists/structural cell biologists who have experience using correlative fluorescence/cryoXM/T at synchrotron beamlines presently available for external users in Europe (HZB TXM at U41-FSGM, BESSY II, Berlin/Germany; Carl Zeiss TXMs at MISTRAL, ALBA, Barcelona/Spain, and B24, DLS, Oxfordshire, UK).
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- 2016
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22. Familial hypercholesterolaemia in the genomic era: improving the clinical utility of current genetic testing
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M. Pennock, E. Watson, M. Wadsley, C. Knowles, J. Evans, C. Robinson, A. Hills, C. Dent, Maggie Williams, G. Woodward, and J. Honeychurch
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medicine.diagnostic_test ,business.industry ,Internal Medicine ,medicine ,General Medicine ,Computational biology ,Current (fluid) ,Cardiology and Cardiovascular Medicine ,business ,Genetic testing - Published
- 2018
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23. Autosomal recessive hypercholesterolaemia due to homozygous ldlrap1 variants: a bristol case review
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M. Wadsley, M. Pennock, E. Watson, J. Honeychurch, H. Soran, A. Morris, J. Evans, G. Woodward, C. Dent, C. Dawson, R. Cramb, A. Hills, C. Robinson, K. Nicholson, and Maggie Williams
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Genetics ,Internal Medicine ,General Medicine ,Cardiology and Cardiovascular Medicine ,Case review - Published
- 2018
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24. Structural and biochemical characterization of a nitrilase from the thermophilic bacterium, Geobacillus pallidus RAPc8
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Johan H. van Heerden, Don A. Cowan, Robert N. Thuku, Arvind Varsani, Rory A. Cameron, Brandon Weber, Joni Frederick, B. Trevor Sewell, Dael S. Williamson, and Kyle C. Dent
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Hot Temperature ,Protein subunit ,Genetic Vectors ,Molecular Sequence Data ,Gene Expression ,Sequence Homology ,Biology ,Polymerase Chain Reaction ,Applied Microbiology and Biotechnology ,Nitrilase ,Aminohydrolases ,Nitriles ,Cluster Analysis ,Amino Acid Sequence ,Cloning, Molecular ,Peptide sequence ,Phylogeny ,DNA Primers ,chemistry.chemical_classification ,Expression vector ,Thermophile ,Inverse polymerase chain reaction ,Geobacillus ,General Medicine ,Recombinant Proteins ,Molecular Weight ,Protein Subunits ,Open reading frame ,Enzyme ,chemistry ,Biochemistry ,Chromatography, Gel ,Electrophoresis, Polyacrylamide Gel ,Protein Multimerization ,Sequence Alignment ,Plasmids ,Biotechnology - Abstract
Geobacillus pallidus RAPc8 (NRRL: B-59396) is a moderately thermophilic gram-positive bacterium, originally isolated from Australian lake sediment. The G. pallidus RAPc8 gene encoding an inducible nitrilase was located and cloned using degenerate primers coding for well-conserved nitrilase sequences, coupled with inverse PCR. The nitrilase open reading frame was cloned into an expression plasmid and the expressed recombinant enzyme purified and characterized. The protein had a monomer molecular weight of 35,790 Da, and the purified functional enzyme had an apparent molecular weight of approximately 600 kDa by size exclusion chromatography. Similar to several plant nitrilases and some bacterial nitrilases, the recombinant G. pallidus RAPc8 enzyme produced both acid and amide products from nitrile substrates. The ratios of acid to amide produced from the substrates we tested are significantly different to those reported for other enzymes, and this has implications for our understanding of the mechanism of the nitrilases which may assist with rational design of these enzymes. Electron microscopy and image classification showed complexes having crescent-like, "c-shaped", circular and "figure-8" shapes. Protein models suggested that the various complexes were composed of 6, 8, 10 and 20 subunits, respectively.
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- 2010
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25. A quantitative analysis of temperature-dependent dormancy changes inPolygonum aviculareseeds
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A. C. Grundy, William E. Finch-Savage, Heather A. Clay, Diego Batlla, and Katherine C. Dent
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Polygonum ,biology ,Seed dormancy ,food and beverages ,Polygonum aviculare ,Plant Science ,Herbaceous plant ,biology.organism_classification ,Horticulture ,Seedling ,Germination ,Botany ,Dormancy ,Weed ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Mathematical models that predict emergence of weed seedbanks could be useful tools for determining the most suitable time for weed seedling control and, consequently, should result in a higher efficacy of applied control methods. To achieve this goal in dormant weed species, functional relationships should be established between environmental factors regulating dormancy and dormancy changes of seed populations. In the present work, we used a simple model and an optimisation procedure to quantify the effect of temperature on Polygonum aviculare seed dormancy release and induction, based on germination data. Dormancy release rate was inversely related to temperature, showing a decreasing logistic trend that results in no dormancy release for seeds exposed to 20 and 25 degrees C. In contrast, dormancy induction rates in absolute values were positively associated with temperature, showing a logistic trend in which dormancy induction was almost zero at low temperatures and maximal at 25 degrees C. Derived model parameters were used to simulate dormancy changes of P. aviculare seeds stored under controlled and field conditions. These results suggest that similar model structures could be used to quantify temperature effects on seed dormancy status of other weed species and to develop predictive models of weed emergence.
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- 2009
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26. The Role of Start-Ups in Structural Transformation
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Fatih Karahan, Benjamin Pugsley, Robert C. Dent, and Aysegul Sahin
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Labour economics ,Margin (finance) ,Rest (finance) ,Economics ,Start up ,Structural transformation - Abstract
The U.S. economy has been going through a striking structural transformation — the secular reallocation of employment across sectors — over the past several decades. We propose a decomposition framework to assess the contributions of various margins of firm dynamics to this shift. Using firm-level data, we find that at least 50 percent of the adjustment has been taking place along the entry margin, owing to sectors receiving shares of start-up employment that differ from their overall employment shares. The rest is mostly the result of life cycle differences across sectors. Declining overall entry has a small but growing effect of dampening structural transformation.
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- 2016
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27. Effects of Nordic walking in Alzheimer’s disease: A single-blind randomized controlled clinical trial
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A. Angiolillo, D. Leccese, S. Ciccotelli, G. Di Cesare, K. D'Elia, N. Aurisano, C. Matrone, C. Dentizzi, and A. Di Costanzo
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Alzheimer’s disease ,Nordic walking ,Cognitive impairment ,Physical activity ,Cognitive domains ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Non-pharmacological approaches, including exercise programs, have been proposed to improve cognitive function and behavioral symptoms, such as depression, agitation, or aggression, in the management of patients with Alzheimer's disease (AD). Indeed, physical inactivity is one of the main modifiable risk factors in patients with AD, as well as in the development of cardiovascular diseases and related pathologies.Although Nordic Walking (NW), a particular type of aerobic exercise, is known to benefit the health of aging populations, there is little evidence that patients with AD may benefit from this non-pharmacological treatment. In this context, we performed a pilot study in 30 patients with mild/moderate AD to evaluate whether NW influences different cognitive domains, including executive functions, visual-spatial abilities, and verbal episodic memory. To this aim, 15 patients (Control group, CG) underwent reality orientation therapy, music therapy, motor, proprioceptive and postural rehabilitation, and 15 patients (experimental group, EG) in addition to the activities performed by the CG also had the NW with a frequency of twice a week. Neuropsychological assessments and evaluations of daily activities and quality of life were performed at baseline and after 24 weeks. Twenty-two patients, including 13 in the CG and nine in the EG completed the activity program after 24 weeks. The EG showed a significant improvement in the Frontal Assessment Battery, Rey's auditory Verbal Learning Test Delayed Recall, Raven's Colored Progressive Matrices, and completion time for the Stroop Word-Color Interference test, compared to the CG. NW was able to improve cognitive domains like visual-spatial reasoning abilities, verbal episodic memory, selective attention, and processing speed in AD patients. These results, if confirmed by further studies with a larger number of patients and a longer training period, may prospect NW as a safe and likely useful strategy to slow down cognitive impairment in mild/moderate AD.
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- 2023
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28. Role of glucosamine in osteoarthritis
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C. Dent, U.K. Debnath, and R. Thakral
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medicine.medical_specialty ,Joint surgery ,Joint space narrowing ,business.industry ,Cartilage ,Arthritis ,Disease ,Osteoarthritis ,medicine.disease ,Natural history ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Glucosamine ,Internal medicine ,medicine ,Physical therapy ,Orthopedics and Sports Medicine ,business - Abstract
Summary Long-term follow-up studies on the effects of glucosamine preparations are still awaited. At present, only short-term results are available. They are known to relieve pain and decrease the rate of joint space narrowing clinically in osteoarthritis of knee, whilst the side effects are less when compared to the anti-inflammatory drugs and even placebos. It is probably safe – but there is no good evidence that it works. It would be ideal to have a medication that is a normal constituent of the human cartilage, which modifies the natural history of the disease. It is possible that long-term clinical studies with glucosamine may result in modifications to the indications for joint surgery or the time patients can live with osteoarthritis before developing substantial disability.
- Published
- 2007
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- View/download PDF
29. Multiple field line resonances: Optical, magnetic and absorption signatures
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Ian R. Mann, Eric Donovan, David K. Milling, I. J. Rae, Emma Spanswick, and Z. C. Dent
- Subjects
Physics ,Field line ,Electron precipitation ,Magnetosphere ,Astronomy and Astrophysics ,Geophysics ,Computational physics ,Amplitude ,Space and Planetary Science ,Physics::Space Physics ,Riometer ,Discrete frequency domain ,Ring current ,Ultra low frequency - Abstract
We present multi-instrument observations of ultra low frequency (ULF) wave activity from the dawn flank magnetosphere during the period 12:00–13:30 UT on the 16 December 2003. Optical, magnetic and riometer measurements from the Churchill line meridian in the Canadian sector are presented which demonstrate the presence of multiple discrete auroral arc structures accompanied by periodic magnetic and riometer absorption perturbations in the Pc5 (150–600 s) ULF band. Clear polewards propagation is demonstrated in all the instrument data sets, the magnetic signals showing most clearly the amplitude and phase characteristics consistent with discrete frequency field line resonances (FLRs) on closed field lines. Two discrete frequency field line resonant signals are apparent, at 1.8 and 3.0 mHz which resonate at approximately the same latitude. We explain this via the calculation of the Alfven continuum, and show that both frequencies may be resonant in the same latitudinal region within instrumental resolution. The meridian scanning photometer (MSP) observations from polewards of the magnetometer determined resonant latitudes show evidence of low intensity (∼200 R) poleward moving discrete arcs related to the ULF waves. Interestingly the MSP observations demonstrate poleward phase propagation with variable rates across the field of view; faster apparent polewards phase propagation being seen at higher latitudes. We demonstrate that the complicated “braided” phase of the arcs can be explained via the precipitation resulting from the superposition of two discrete FLRs. Furthermore, we characterise the ≳25 keV energetic electron precipitation in the region of the FLRs and the arc structures via periodic D-region absorption. In this way, we link the magnetic and both soft and energetic particle precipitation signatures of FLRs together for the first time. Our results demonstrate that riometer absorption can be used to characterise FLRs, however, this is only generally possible at lower L-shells where energetic electrons in the ring current overlap with the FLR fields in the equatorial plane.
- Published
- 2007
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- View/download PDF
30. Effects of two hurricanes onSyringodium filiforme, manatee grass, within the Loxahatchee River estuary, Southeast Florida
- Author
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D. Albrey Arrinton, Richard C. Dent, and Mary S. Ridler
- Subjects
Hydrology ,Biomass (ecology) ,geography ,geography.geographical_feature_category ,Ecology ,biology ,Syringodium filiforme ,Storm ,Estuary ,Aquatic Science ,biology.organism_classification ,Salinity ,Habitat suitability ,Seagrass ,Oceanography ,biology.animal ,Manatee ,Environmental science ,Ecology, Evolution, Behavior and Systematics - Abstract
In September 2004, the Loxahatchee River Estuary was affected by Hurricanes Frances and Jeanne, which resulted in a monthly rainfall record of 610 mm and abnormally high freshwater discharges to the system. The occurrence, density, and biomass ofSyringodium filiforme in the Loxahatchee River Estuary declined significantly following the September 2004 storms based on 15 mo of pre-hurricane monitoring and 12 mo of post-hurricane monitoring. Throughout posthurricane monitoring,S. filiforme showed no sign of recovery, thoughHalophila johnsonii increased considerably during the post-hurricane period. Freshwater discharges resulting from the September 2004 hurricanes lowered minimum daily salinity values to near zero and increased standard deviation of daily salinity values to 11‰. Extremely low minimum daily salinity values and high daily salinity fluctuations likely resulted in the observed decline ofS. filiforme. We advise the use of minimum daily salinity values when assessing seagrass habitat suitability or when modeling the effects of alternative water management scenarios.
- Published
- 2006
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- View/download PDF
31. The design and synthesis of a tricyclic single-nitrogen scaffold that serves as a 5-HT2C receptor agonist
- Author
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William F. Hodnick, Luis Llamas, Thomas C. Dent, Jianping Song, Youssef L. Bennani, Michael J. Robarge, John J. Harrington, Alain Stricker-Krongrad, Kurt R. Brunden, Bayard Huck, and Chris Crumrine
- Subjects
Agonist ,Nitrogen ,medicine.drug_class ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Chemical synthesis ,Structure-Activity Relationship ,Dogs ,Drug Discovery ,medicine ,Animals ,Structure–activity relationship ,Receptor ,Molecular Biology ,G protein-coupled receptor ,chemistry.chemical_classification ,Organic Chemistry ,Biological activity ,Feeding Behavior ,Rats ,Serotonin Receptor Agonists ,chemistry ,Drug Design ,Molecular Medicine ,5-HT2C receptor agonist ,Serotonin 5-HT2 Receptor Agonists ,Half-Life ,Tricyclic - Abstract
5-HT2C agonists have shown efficacy in limiting food consumption and thus may serve as an important drug class in combating obesity. We describe the design and synthesis of a novel tricyclic single-nitrogen scaffold that was used to produce 5-HT2C agonists. SAR was developed around this chemotype and compounds were identified that were potent (Ki
- Published
- 2006
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- View/download PDF
32. The identification of pyrimidine-diazabicyclo[3.3.0]octane derivatives as 5-HT2C receptor agonists
- Author
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Luis Llamas, William F. Hodnick, Michael J. Robarge, Bayard Huck, Chris Crumrine, Youssef L. Bennani, John J. Harrington, Thomas C. Dent, Alain Stricker-Krongrad, Kurt R. Brunden, and Jianping Song
- Subjects
Agonist ,Pyrimidine ,medicine.drug_class ,media_common.quotation_subject ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Chemical synthesis ,Bridged Bicyclo Compounds ,Structure-Activity Relationship ,chemistry.chemical_compound ,Drug Discovery ,Receptor, Serotonin, 5-HT2C ,medicine ,Animals ,Amines ,Receptor ,Molecular Biology ,media_common ,Octane ,Aza Compounds ,Molecular Structure ,Organic Chemistry ,Stereoisomerism ,Appetite ,Small molecule ,Rats ,5-HT2C receptor ,Pyrimidines ,chemistry ,Molecular Medicine ,Serotonin 5-HT2 Receptor Agonists - Abstract
The 5-HT2C receptor has been implicated in the regulation of appetite. As such, small molecule agonists to this receptor may serve as novel therapies to combat obesity. We describe here the identification, synthesis, and SAR of a 5-HT2C agonist from a unique pyrimidine-diazabicyclo[3.3.0]octane series. This compound displayed good potency at the 5-HT2C receptor, modest selectivity relative to other 5-HT2 receptors, and was efficacious in an acute feeding study in rats.
- Published
- 2006
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- View/download PDF
33. The outer radiation belt injection, transport, acceleration and loss satellite (ORBITALS): A canadian small satellite mission for ILWS
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T. P. O'Brien, Dimitris Vassiliadis, Marc Lessard, Richard M. Thorne, David J. Knudsen, Robert Rankin, Brian Fraser, David Boteler, I. Thomson, K. Balmain, R. Fedosejeves, Ian R. Mann, John R. Wygant, C. Unick, T. M. Loto'aniu, Geoffrey D. Reeves, Janet C. Green, Sebastien Bourdarie, George J. Sofko, Vania K. Jordanova, Danny Summers, Z. C. Dent, J. H. Clemmons, David K. Milling, L. M. Kistler, J. F. Fennell, A. Kale, I. J. Rae, Louis Ozeke, Aaron J. Ridley, Terrance Onsager, Andrew W. Yau, Ying Y. Tsui, J. B. Blake, and Alex Degeling
- Subjects
Physics ,Atmospheric Science ,Geosynchronous orbit ,Aerospace Engineering ,Magnetosphere ,Astronomy ,Astronomy and Astrophysics ,Space weather ,Canadian Geospace Monitoring ,Acceleration ,symbols.namesake ,Geophysics ,Space and Planetary Science ,Van Allen radiation belt ,Physics::Space Physics ,symbols ,Communications satellite ,General Earth and Planetary Sciences ,Satellite ,Astrophysics::Earth and Planetary Astrophysics - Abstract
The outer radiation belt injection, transport, acceleration and loss satellite (ORBITALS) is a small satellite mission proposed as a Canadian contribution to the satellite infrastructure for the International Living With a Star (ILWS) program. The ORBITALS will monitor the energetic electron and ion populations in the inner magnetosphere across a wide range of energies (keV to tens of MeV) as well as the dynamic electric and magnetic fields, waves and cold plasma environment which govern the injection, transport, acceleration and loss of these energetic and space weather critical particle populations. ORBITALS will be launched around 2010–2012 into a low-inclination GTO-like orbit which maximizes the long-lasting apogee-pass conjunctions with both the ground-based instruments of the Canadian Geospace Monitoring (CGSM) array as well as with the GOES East and West and geosynchronous communications satellites in the North American sector. Specifically, the ORBITALS will make the measurements necessary to gain fundamental new understanding of the relative importance of different physical acceleration and loss processes which are hypothesised to shape the energetic particle populations in the inner magnetosphere. The ORBITALS will also provide the raw radiation measurements at MEO altitudes necessary for the development of the next-generation of radiation belt specification models, and on-board experiments will also monitor the dose, single-event upset, and deep-dielectric charging responses of electronic components on-orbit. In this paper we outline the scientific objectives of the ORBITALS mission, discuss how the ORBITALS will lead to solutions to outstanding questions in inner magnetospheric science, and examine how the ORBITALS will complement other proposed inner magnetosphere missions in the ILWS era.
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- 2006
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34. School-Based Intervention for Adolescents with Social Anxiety Disorder: Results of a Controlled Study
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Carrie Masia-Warner, Paige H. Fisher, Mary Guardino, Jose Alvir, Heather C. Dent, Rachel G. Klein, and Anne Marie Albano
- Subjects
Male ,Parents ,medicine.medical_specialty ,Self Disclosure ,Adolescent ,Psychological intervention ,Severity of Illness Index ,Peer Group ,law.invention ,Randomized controlled trial ,Adolescent Psychiatry ,law ,Intervention (counseling) ,Severity of illness ,Developmental and Educational Psychology ,medicine ,Humans ,Social Behavior ,Psychiatry ,School Health Services ,Psychiatric Status Rating Scales ,Social anxiety ,Peer group ,medicine.disease ,Anxiety Disorders ,Psychiatry and Mental health ,Treatment Outcome ,Adolescent Behavior ,Psychotherapy, Group ,Self-disclosure ,Female ,New York City ,Psychology ,Anxiety disorder ,Follow-Up Studies ,Clinical psychology - Abstract
Social anxiety disorder, whose onset peaks in adolescence, is associated with significant impairment. Despite the availability of effective treatments, few affected youth receive services. Transporting interventions into schools may circumvent barriers to treatment. The efficacy of a school-based intervention for social anxiety disorder was examined in a randomized wait-list control trial of 35 adolescents (26 females). Independent evaluators, blind to treatment condition, evaluated participants at preintervention, postintervention, and 9 months later. Adolescents in the intervention group demonstrated significantly greater reductions than controls in social anxiety and avoidance, as well as significantly improved overall functioning. In addition, 67% of treated subjects, compared to 6% of wait-list participants, no longer met criteria for social phobia following treatment. Findings support the possible efficacy of school-based intervention for facilitating access to treatment for socially anxious adolescents.
- Published
- 2005
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- View/download PDF
35. Nitric oxide inhibition and the impact on renal nerve-mediated antinatriuresis and antidiuresis in the anaesthetized rat
- Author
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Janusz Sadowski, Edward J. Johns, Agnieszka Walkowska, P. C. Dent, and N. M. Bagnall
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medicine.medical_specialty ,Physiology ,Chemistry ,Reabsorption ,Renal function ,Stimulation ,Nitric oxide ,chemistry.chemical_compound ,Endocrinology ,Blood pressure ,Excretory system ,Renal physiology ,Internal medicine ,Renal blood flow ,medicine - Abstract
The contribution of nitric oxide (NO) to the antinatriuresis and antidiuresis caused by low-level electrical stimulation of the renal sympathetic nerves (RNS) was investigated in rats anaesthetized with chloralose-urethane. Groups of rats, n= 6, were given i.v. infusions of vehicle, l-NAME (10 microg kg(-1) min(-1)), 1400W (20 microg kg(-1) min(-1)), or S-methyl-thiocitrulline (SMTC) (20 microg kg(-1) min(-1)) to inhibit NO synthesis non-selectively or selectively to block the inducible or neuronal NOS isoforms (iNOS and nNOS, respectively). Following baseline measurements of blood pressure (BP), renal blood flow (RBF), glomerular filtration rate (GFR), urine flow (UV) and sodium excretion (U(Na)V), RNS was performed at 15 V, 2 ms duration with a frequency between 0.5 and 1.0 Hz. RNS did not cause measurable changes in BP, RBF or GFR in any of the groups. In untreated rats, RNS decreased UV and U(Na)V by 40-50% (both P < 0.01), but these excretory responses were prevented in l-NAME-treated rats. In the presence of 1400W i.v., RNS caused reversible reductions in both UV and U(Na)V of 40-50% (both P < 0.01), while in SMTC-treated rats, RNS caused an inconsistent fall in UV, but a significant reduction (P < 0.05) in U(Na)V of 21%. These data demonstrated that the renal nerve-mediated antinatriuresis and antidiuresis was dependent on the presence of NO, generated in part by nNOS. The findings suggest that NO importantly modulates the neural control of fluid reabsorption; the control may be facilitatory at a presynaptic level but inhibitory on tubular reabsorptive processes.
- Published
- 2005
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36. The protective influence of spirituality and 'Health-as-a-Value' against monthly substance use among adolescents varying in risk*1
- Author
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A RITTOLSON, J MILAM, J UNGER, D TRINIDAD, L TERAN, C DENT, and S SUSSMAN
- Subjects
Psychiatry and Mental health ,Pediatrics, Perinatology and Child Health ,Public Health, Environmental and Occupational Health - Published
- 2004
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- View/download PDF
37. Molecular profiling of microbial communities associated with seeds of Beta vulgaris subsp. Vulgaris (sugar beet)
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William E. Finch-Savage, Katherine C. Dent, and John R. Stephen
- Subjects
DNA, Bacterial ,Microbiology (medical) ,Touchdown polymerase chain reaction ,DNA, Ribosomal ,Polymerase Chain Reaction ,Microbiology ,law.invention ,law ,Pseudomonas ,Botany ,DNA, Fungal ,Molecular Biology ,Polymerase chain reaction ,Trichoderma ,biology ,Gene Expression Profiling ,Fungal genetics ,food and beverages ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,DNA extraction ,Seeds ,Electrophoresis, Polyacrylamide Gel ,Sugar beet ,Beta vulgaris ,Temperature gradient gel electrophoresis - Abstract
The composition of microbial communities on and within seeds may effect their storage and field performance, whether they are indigenous or applied as biocontrol agents. In this study, we have explored the usefulness of profiling small subunit ribosomal (SSR) gene fragments for studying the microflora associated with seeds. DNA was amplified by the polymerase chain reaction (PCR) and the amplicons separated using denaturing gradient gel electrophoresis (DGGE). Primers targeting eukaryotic SSRs were used to investigate fungal communities, and primers targeting bacterial SSRs were employed to study the eubacterial microflora. As a case study, we attempted to profile the fungi and bacteria associated with seeds of Beta vulgaris (sugar beet) to permit an insight into the varying field performance of several well-characterised commercial seed lots. Serious interference with the microbial signals was observed from the plant's own nuclear 18S rRNA genes and chloroplast 16S rRNA genes using standard PCR conditions and DNA extracted from whole seeds as template. Hot-start and touchdown PCR made no appreciable improvement to these signals. Seed imbibition and dissection into operculum and fruit wall and true seed prior to DNA extraction improved signal recovery in the fruit fraction. With primer modification, bacteria and fungi were detected in an excess of plant DNA of 100:1 and 10:1, respectively. With this method, microbial communities on seeds could be profiled, however, it is likely that targeted depletion of plant rDNA targets will be a necessary extra step before this approach can be used to screen seeds routinely.
- Published
- 2004
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38. Growth in English Education : 1946-1952
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H C Dent and H C Dent
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- LA631.82
- Abstract
Originally published in 1954.Examining the historical background to the Education Act of 1944 and the social and political difficulties in implementing it, this volume also traces the development of teaching training in the post-war years.
- Published
- 2013
39. Secondary Education for All : Origins and Development in England
- Author
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H C Dent and H C Dent
- Subjects
- LC135.G7
- Abstract
The Education Act of 1944 launched an unprecedented experiment in the history of education in the UK. This book is a brief survey of the routes by which compulsory free secondary education was arrived at, as well as an examination of the position in 1949 and suggestions for the future.
- Published
- 2013
40. A cDNA encoding a cold-induced glycine-rich RNA binding protein from Prunus avium expressed in embryonic axes
- Author
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John R. Stephen, William E. Finch-Savage, and Katherine C. Dent
- Subjects
DNA, Complementary ,Molecular Sequence Data ,RNA-binding protein ,Biology ,Gene Expression Regulation, Plant ,Complementary DNA ,Genetics ,Amino Acid Sequence ,Northern blot ,Gene ,Plant Proteins ,Base Sequence ,Sequence Homology, Amino Acid ,RNA recognition motif ,cDNA library ,Gene Expression Regulation, Developmental ,RNA-Binding Proteins ,RNA ,Sequence Analysis, DNA ,General Medicine ,Molecular biology ,Cold Temperature ,Open reading frame ,Seeds ,Prunus ,Sequence Alignment - Abstract
A cDNA clone encoding a presumed full-length glycine-rich ribonucleic acid (RNA) binding protein was isolated from a lambda-ZAP Express cDNA library generated from primarily nondormant Prunus avium (wild cherry) embryonic axes. The cDNA, designated Pa-RRM-GRP1 (Prunus avium RNA recognition motif glycine-rich protein 1), contains a single N-terminal RNA recognition motif (RRM) and single C-terminal glycine-rich domain. The glycine-rich domain is unusually long at 91 amino acids, 58 of which are glycines. The 534-base pair (bp) open reading frame (ORF) of this clone encodes a 178-amino-acid polypeptide with a predicted molecular weight of 17.33 kDa and pI of 7.84. Comparative sequence alignment of Pa-RRM-GRP1 reveals extensive homology to known and presumed glycine-rich RNA binding proteins from angiosperms and gymnosperms. Genomic Southern blot analysis suggests that this gene exists as a single copy in P. avium. Expression of this gene in P. avium embryonic axes during low-temperature dormancy-breaking treatments was studied and found to be induced by cold (3 degrees C) using real-time PCR of total cDNA supported by Northern blot analysis of total RNA. Expression dropped during prolonged storage at 3 degrees C and was reduced to control levels by interruption of cold treatment by warming to 20 degrees C.
- Published
- 2003
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41. [Untitled]
- Author
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S. P. Budge, Katherine C. Dent, John P. Clarkson, John M. Whipps, Heather A. Clay, and William E. Finch-Savage
- Subjects
education.field_of_study ,Thiram ,Population ,Recalcitrant seed ,Benomyl ,Plant Science ,Horticulture ,Biology ,Acorn ,biology.organism_classification ,Conidium ,Fungicide ,Quercus robur ,chemistry.chemical_compound ,chemistry ,Botany ,education ,Agronomy and Crop Science - Abstract
The fungal pathogen Sclerotinia pseudotuberosa is a major cause of deterioration during storage of Quercus robur seeds (acorns) and along with other, mainly saprotrophic fungi, contributes to the decline of viability and vigour in the acorn population. Hot-water thermotherapy (HWT; 41 °C for 2.5 h) killed the fungal pathogen S. pseudotuberosa and prolonged the storage life of acorns. The addition of the systemic fungicide benomyl to the HWT and/or the broad-spectrum fungicide thiram as a seed dressing further enhanced the storage life of acorns. Three fungal antagonists, Coniothyrium minitans, Trichoderma sp. (KW3) and Trichoderma virens (G20), were also applied as a film-coating to acorns using a polyvinylacetate sticker achieving ca. 107–108 viable conidia per acorn. The biological treatments provided protection against infection and the spread of infection of S. pseudotuberosa and other fungi on the acorns during storage over several months. All treated and stored acorns grew normally following sowing in seedbeds. The Trichoderma species were more effective than C. minitans, with T. virens being the most effective. T. virens reduced pathogen spread from acorns infected with S. pseudotuberosa to `clean' acorns when T. virens coated infected and 'clean' acorns were mixed together. However, T. virens was less effective than HWT at preventing the proliferation of this pathogen within individual acorns that were infected before coating. A combination of HWT and subsequent coating with T. virens provided a more effective control against both S. pseudotuberosa and saprotrophic fungi than when either treatment was applied alone.
- Published
- 2003
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- View/download PDF
42. Analysis of magnetometer data using wavelet transforms
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Ian R. Mann, Julia M. Rees, C. R. Wilford, Zoe C. Dent, and R. J. Moffett
- Subjects
Physics ,Geomagnetic storm ,General Mathematics ,General Engineering ,General Physics and Astronomy ,Wavelet transform ,Magnetosphere ,Plasmasphere ,Geophysics ,Physics::Geophysics ,Amplitude ,Nuclear magnetic resonance ,Earth's magnetic field ,Wavelet ,Physics::Space Physics ,Data analysis - Abstract
Geomagnetic field–line resonances may be identified via the use of cross–phase analysis of data from two closely spaced meridional ground–based magnetometer stations. It has been demonstrated that preprocessing of the data using a wavelet–based filter, chosen with regard to the variance of coefficients of the wavelet components, can be used to remove both low–frequency trend and large amplitude, localized structures, thus facilitating the selection of the eigenfrequency. We demonstrate that the dependence of the variance of coefficients on the wavelet level during a geomagnetic storm event is characteristically different from that obtained from data on a day associated with quiet geomagnetic activity. This suggests that the spectral nature of magnetic disturbances excited in the magnetosphere is dependent upon the level of geomagnetic activity.
- Published
- 2002
- Full Text
- View/download PDF
43. Standardising genetic variant classification for FH – application of the ACMG guidelines
- Author
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L. Yarram-Smith, A. Hills, J. Honeychurch, Sarah Leigh, K. Haralambos, Graham Bayly, Steve E. Humphries, E. Watson, Maggie Williams, P. Dean, G. Woodward, M. Wadsley, J. Davies, and C. Dent
- Subjects
Internal Medicine ,Genetic variants ,General Medicine ,Computational biology ,Biology ,Cardiology and Cardiovascular Medicine - Published
- 2017
- Full Text
- View/download PDF
44. Interindividual differences in embodied marginalization: Osteological and stable isotope analyses of antebellum enslaved individuals
- Author
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Sophia C. Dent
- Subjects
Adult ,Male ,Population ,Enslaved Persons ,Anthropology, Physical ,Young Adult ,Stress, Physiological ,Bioarchaeology ,North Carolina ,Genetics ,Humans ,Cemeteries ,0601 history and archaeology ,Child ,education ,Ecology, Evolution, Behavior and Systematics ,Isotope analysis ,Carbon Isotopes ,education.field_of_study ,060101 anthropology ,Nitrogen Isotopes ,060102 archaeology ,Osteology ,Stable isotope ratio ,Infant, Newborn ,Stomatognathic Diseases ,Foodways ,Disease ecology ,Infant ,06 humanities and the arts ,Middle Aged ,Geography ,Archaeology ,Embodied cognition ,Child, Preschool ,Anthropology ,Female ,Bone Diseases ,Anatomy ,Demography - Abstract
Objectives Through pathological and stable isotope analyses, this study probes the stressors, disease ecology, and diets of enslaved individuals from an antebellum plantation cemetery. The study aims to highlight how interindividual isotopic differences reveal that marginalization is not uniformly experienced or embodied. Methods The cemetery population consists of 16 individuals; dental and skeletal pathological indicators were collected for all individuals, and light stable isotope ratios (δ15N, δ13C) were generated from the collagen and hydroxyapatite of nine individuals. Results The analyzed individuals have high frequencies of enamel defects—similar to contemporaneous enslaved cemetery individuals—and particularly high frequencies of carious lesions. Skeletal analysis shows evidence of chronic conditions among several individuals, two of whom likely have tuberculosis. Although the sample size is small, stable isotope values display interesting trends: there is interindividual heterogeneity in δ13C values, and most subadults from the cemetery have lower δ15N and higher δ13C values than the sampled adults. These relationships can be tested with larger datasets and have the potential to reveal important information about slave foodways and the broader experience of enslavement. Conclusions The results of this study suggest that racial discrimination, enslavement, and age do not fully account for the heterogeneity in degree of embodied stressors. There are likely other factors at play, intersecting with the aforementioned, that influenced the lived experience of slavery and the degree of marginalization.
- Published
- 2017
- Full Text
- View/download PDF
45. Critical step-by-step approaches toward correlative fluorescence/soft X-ray cryo-microscopy of adherent mammalian cells
- Author
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Kyle C, Dent, Christoph, Hagen, and Kay, Grünewald
- Subjects
Cryopreservation ,Microscopy, Fluorescence ,Tomography, X-Ray ,Cell Adhesion ,Image Processing, Computer-Assisted ,Animals ,Humans ,Single-Cell Analysis ,Cells, Cultured - Abstract
Soft X-ray cryo-microscopy/tomography with its extraordinary capability to map vitreous cells with high absorption contrast in their full three-dimensional extent, and at a resolution exceeding super-resolution fluorescence microscopy, is a valuable tool for integrative structural cell biology. Focusing on cell biological applications, its ongoing methodological development gained momentum by combining it with fluorescence cryo-microscopy, thus correlating highly resolved structural and specific information in situ. In this chapter, we provide a basic description of the techniques, as well as an overview of equipment and methods available to carry out correlative soft X-ray cryo-tomography experiments on frozen-hydrated cells grown on a planar support. Our aim here is to suggest ways that biologically representative data can be recorded to the highest possible resolution, while also keeping in mind the limitations of the technique during data acquisition and analysis. We have written from our perspective as electron cryo-microscopists/structural cell biologists who have experience using correlative fluorescence/cryoXM/T at synchrotron beamlines presently available for external users in Europe (HZB TXM at U41-FSGM, BESSY II, Berlin/Germany; Carl Zeiss TXMs at MISTRAL, ALBA, Barcelona/Spain, and B24, DLS, Oxfordshire, UK).
- Published
- 2014
46. On a Conjecture of Foulkes
- Author
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Suzie C. Dent and Johannes Siemons
- Subjects
Combinatorics ,Discrete mathematics ,Permutation ,Cardinality ,Conjecture ,Algebra and Number Theory ,Field (mathematics) ,Complex number ,Mathematics - Abstract
Suppose that Ω = {1, 2,…, ab } for some non-negative integers a and b . Denote by P ( a , b ) the set of unordered partitions of Ω into a parts of cardinality b . In this paper we study the decomposition of the permutation module C P ( a , b ) where C is the field of complex numbers. In particular, we show that C P (3, b ) is isomorphic to a submodule of C P ( b , 3) for b ≥ 3. This settles the next unproven case of a conjecture of Foulkes.
- Published
- 2000
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- View/download PDF
47. An endoscopic assisted retrosigmoid approach to the cerebello-pontine angle for resection of an epidermoid cyst
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Carl B. Heilman, Mina G. Safain, and Walter C. Dent
- Subjects
Adult ,Endoscope ,business.industry ,Cranial nerves ,Epidermal Cyst ,General Medicine ,Epidermoid cyst ,Anatomy ,Cerebellopontine Angle ,Neurovascular bundle ,medicine.disease ,Magnetic Resonance Imaging ,Pons ,Neurosurgical Procedures ,Resection ,Endoscopic assisted ,Retrosigmoid approach ,Neuroendoscopy ,Medicine ,Humans ,Surgery ,Female ,Neurology (clinical) ,business ,Cerebellar Neoplasms - Abstract
Epidermoid cysts are rare lesions accounting for 1% of intracranial tumors with approximately 50% located within the cerebello-pontine angle (CPA). Resection is complicated by their close anatomical relation to critical neurovascular structures and their tendency to be densely adherent making complete removal a significant neurosurgical challenge. We present a 35-year-old woman with left sided tongue numbness and lower lip paresthesias with a CPA epidermoid. An endoscopic assisted retrosigmoid approach was utilized for resection. A 30-degree endoscope was used to assist in removal of unseen tumor in Meckel's cave, medial to the lower cranial nerves, and along the ventral pons.The video can be found here: http://youtu.be/bv0lMPbX7BY.
- Published
- 2014
48. Growth in English Education
- Author
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H C Dent
- Published
- 2013
- Full Text
- View/download PDF
49. State of the art techniques and challenges ahead for DG planning and optimization
- Author
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A. Keane, L.F. Ochoa, C. Borges, G. Ault, A. Alarcon, R. Currie, F. Pilo, C. Dent, G. Harrison
- Abstract
It is difficult to estimate how much distributed generation (DG) capacity will be connected to distribution systems in the coming years, however, it is certain that increasing penetration levels require robust tools that help assess the capabilities and requirements of the networks in order to produce the best planning and control strategies. The work of this Task Force is focused on the numerous strategies and methods that have been developed in recent years to address DG integration and planning. This paper contains a critical review of the work in this field. Although there have been numerous publications in this area, widespread implementation of the methods has not taken place. The barriers to implementation of the advanced techniques are outlined, highlighting why network operators have been slow to pick up on the research to date. Furthermore, key challenges ahead which remain to be tackled are also described, many of which have come into clear focus with the current drive towards smarter distribution networks.
- Published
- 2013
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- View/download PDF
50. Particle image velocimetry analysis of IC engine in-cylinder flows
- Author
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Neil A. Halliwell, M. Reeves, J. C. Dent, and Colin P. Garner
- Subjects
Physics ,Crank ,Dynamic range ,Mechanical Engineering ,Acoustics ,Autocorrelation ,Compression (physics) ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Cylinder (engine) ,law.invention ,Physics::Fluid Dynamics ,Particle image velocimetry ,Flow (mathematics) ,law ,Electrical and Electronic Engineering ,Image resolution - Abstract
This paper discusses the use of particle image velocimetry for measuring in-cylinder flows in multi-valve IC engines. The techniques and their limitations are discussed with special reference to the study of large-scale flow structures in a four valve optical IC engine exhibiting significant barrel swirl. Examples of velocity vector maps derived by digital autocorrelation are presented for a range of crank angles through the induction and compression strokes from both horizontal and vertical measurement planes. The evident strengths and limitations of the current technique for in-cylinder applications are discussed with respect to spatial resolution, velocity gradients and dynamic range. Recent developments for overcoming the limitations are also reviewed.
- Published
- 1996
- Full Text
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