296 results on '"C Schirmer"'
Search Results
2. Editorial: Is aberrant genome organization a cause or consequence of specific diseases?
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Eric C. Schirmer and Joanna M. Bridger
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genome organization ,ageing ,lamina associated domains ,cancer ,laminopathies ,epigenetics ,Biology (General) ,QH301-705.5 - Published
- 2023
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3. Reduction in Nuclear Size by DHRS7 in Prostate Cancer Cells and by Estradiol Propionate in DHRS7-Depleted Cells
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Andrea Rizzotto, Sylvain Tollis, Nhan T. Pham, Yijing Zheng, Maria Alba Abad, Jan Wildenhain, A. Arockia Jeyaprakash, Manfred Auer, Mike Tyers, and Eric C. Schirmer
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nuclear size regulation ,cancer ,metastasis ,NET50 ,androgen-insensitive ,Cytology ,QH573-671 - Abstract
Increased nuclear size correlates with lower survival rates and higher grades for prostate cancer. The short-chain dehydrogenase/reductase (SDR) family member DHRS7 was suggested as a biomarker for use in prostate cancer grading because it is largely lost in higher-grade tumors. Here, we found that reduction in DHRS7 from the LNCaP prostate cancer cell line with normally high levels of DHRS7 increases nuclear size, potentially explaining the nuclear size increase observed in higher-grade prostate tumors where it is lost. An exogenous expression of DHRS7 in the PC3 prostate cancer cell line with normally low DHRS7 levels correspondingly decreases nuclear size. We separately tested 80 compounds from the Microsource Spectrum library for their ability to restore normal smaller nuclear size to PC3 cells, finding that estradiol propionate had the same effect as the re-expression of DHRS7 in PC3 cells. However, the drug had no effect on LNCaP cells or PC3 cells re-expressing DHRS7. We speculate that separately reported beneficial effects of estrogens in androgen-independent prostate cancer may only occur with the loss of DHRS7/ increased nuclear size, and thus propose DHRS7 levels and nuclear size as potential biomarkers for the likely effectiveness of estrogen-based treatments.
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- 2023
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4. Genomic loci mispositioning in Tmem120a knockout mice yields latent lipodystrophy
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Rafal Czapiewski, Dzmitry G. Batrakou, Jose I. de las Heras, Roderick N. Carter, Aishwarya Sivakumar, Magdalena Sliwinska, Charles R. Dixon, Shaun Webb, Giovanna Lattanzi, Nicholas M. Morton, and Eric C. Schirmer
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Science - Abstract
Little is known how spatial genome organization is directed in fat; however, key proadipogenic genes reposition from the nuclear envelope (NE) to the interior during adipogenesis. Here the authors show that deletion of NE protein Tmem120a in adipocytes disrupts fat genome organization, which results in suppression of lipid metabolism pathways and induces myogenic gene expression.
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- 2022
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5. Nuclear size rectification: A potential new therapeutic approach to reduce metastasis in cancer
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Eric C. Schirmer, Leena Latonen, and Sylvain Tollis
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cancer ,metastasis ,cell migration ,nuclear size ,NET ,lamin ,Biology (General) ,QH301-705.5 - Abstract
Research on metastasis has recently regained considerable interest with the hope that single cell technologies might reveal the most critical changes that support tumor spread. However, it is possible that part of the answer has been visible through the microscope for close to 200 years. Changes in nuclear size characteristically occur in many cancer types when the cells metastasize. This was initially discarded as contributing to the metastatic spread because, depending on tumor types, both increases and decreases in nuclear size could correlate with increased metastasis. However, recent work on nuclear mechanics and the connectivity between chromatin, the nucleoskeleton, and the cytoskeleton indicate that changes in this connectivity can have profound impacts on cell mobility and invasiveness. Critically, a recent study found that reversing tumor type-dependent nuclear size changes correlated with reduced cell migration and invasion. Accordingly, it seems appropriate to now revisit possible contributory roles of nuclear size changes to metastasis.
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- 2022
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6. Nuclear organization and dynamics: The final Frontier for understanding genome regulation
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Eric C. Schirmer
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nucleus ,organization ,dynamics ,outlook ,challenges ,Biology (General) ,QH301-705.5 - Published
- 2022
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7. Anastomose esofagogástrica cervical em dois tempos
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Leandro T. Cavazzola, Richard R. Gursk, Carlos C. Schirmer, André Ricardo P. da Rosa, Guilherme Pesce, João Pedro B. Telles, and Cleber Dario P. Kruel
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Carcinoma epidermóide de esôfago ,cirurgia ,anastomoses ,fístulas ,complicações pós-operatórias ,óbito ,Medicine - Abstract
OBJETIVO: A anastomose esofagogástrica cervical é um procedimento utilizado para restaurar a continuidade do trato digestivo após cirurgias curativas ou paliativas para o câncer esofágico. O Grupo de Cirurgia do Esôfago, Estômago e Intestino Delgado do Hospital de Clínicas de Porto Alegre realiza o procedimento em 2 tempos cirúrgicos. No primeiro tempo, realiza-se uma esofagostomia cervical lateral e posiciona-se o substituto esofágico no pescoço. O segundo tempo é realizado uma semana após, com a sutura do esôfago remanescente no substituto elevado ao pescoço. Este substituto é escolhido entre os procedimentos de levantamento gástrico (LG) e tubo gástrico de grande curvatura (TGC), conforme a possibilidade ou não de ressecção da lesão esofágica. O objetivo do presente trabalho é de descrever os resultados precoces (até 30 dias) obtidos com a realização de anastomose esôfago-gástrica cervical retardada (postergada) após procedimento cirúrgico de ressecção ou bypass esofágico por neoplasia de esôfago. MATERIAIS E MÉTODOS: Cinqüenta e nove pacientes preencheram os critérios de inclusão, sendo 49 homens, 55 brancos, com uma média de idade de 51,5 anos. Vinte e dois pacientes realizaram cirurgia de levantamento gástrico. Os fatores de risco conhecidos para complicações pós-operatórias foram similares entre os dois grupos. A única diferença entre os grupos na avaliação pré-operatória foi o estágio do tumor, o que era esperado, tendo em vista os critérios usados para a escolha do procedimento. RESULTADOS: A fístula cervical foi detectada em sete pacientes (31,8%) do grupo LG e em nove pacientes (34,3%) do grupo TGC (RR 1,3; IC 95%: 0,5-3,0, P = 0.54). Dois pacientes (9,1%) do grupo LG e um paciente (2,7%) do grupo TGC foram a óbito (RR 3,4; IC 95%: 0,3-34,9, P = 0,54). As complicações infecciosas ocorreram em um paciente (4,5%) do grupo LG e 7 pacientes (18,9%) do grupo TGC (RR 0,2; IC 95%: 0,1-1,8, P = 0,23). Não houve diferenças entre os grupos, levando em conta a ocorrência de fístula cervical no pós-operatório, mortalidade hospitalar precoce (30 dias após a cirurgia) e infecções. CONCLUSÕES: Os dados apresentados nesta série são semelhantes a outros serviços de referência para o tratamento do câncer de esôfago, e nessa série não houve diferença entre os LG e TGC em relação às complicações no pós-operatório precoce.
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- 2022
8. Induction of intrabdominal adhesion formation by a polypropylene mesh prosthesis
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Richard R. Gurski, Carlos C. Schirmer, Jeverson Wagner, Gustavo L. Berlim, Marcelo F. Müller, Plauto E. Beck, Juliana Weidlich, Betina Teruchkin, Alexandre V. Schwarzbold, Cristina S. M. Leite, Mariana F. Tatsch, Maurício Saueressig, Maria I. Edelweiss, and Cleber D. P. Kruel
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Medicine - Abstract
INTRODUCTION: The correction of groin hernias using a transperitoneal videolaparoscopic method with a polypropylene mesh is becoming increasingly common. This could lead to an increased incidence of adhesion formation. MATERIALS AND METHODS: The incidence of adhesions induced by mesh placement and by reperitonization was observed in 40 male adult Wistar rats, randomly allocated to four groups of 10 rats (Group A = no mesh, no reperitonization; B = no mesh, reperitonization; C = mesh, no reperitonization; D = mesh and reperitonization). After opening the abdominal cavity, the iliac fossa was identified and a peritoneal opening, measuring about 2 by 2 cm, was done on the parietal wall. In the rats in which a polypropylene prosthesis was used, a piece of Marlex mesh, measuring about 1.5 by 1.5 cm was placed on the peritoneal opening. A simple suture was performed in the animals submitted to reperitonization, using a 5.0 monofilamentar polypropylene thread on a cardiovascular (atraumatic) needle. The animals were killed 15 days after the operation. Macroscopic analysis was done by an investigator blinded to intervention group. Fisher’s exact test and the c2 test were used for statistical analysis of the results. A P < 0.05 was considered as significant. RESULTS: Adhesions were significantly more common in the groups in which the prosthesis was placed (59% vs. 95%; P = 0.01), as well as in the groups in which reperitonization was performed (58% vs. 100%; P = 0.03). CONCLUSIONS: The results suggest that polypropylene mesh placement and reperitonization are each independent factors that have a role in inducing the formation of adhesions.
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- 2022
9. Nucleoplasmic signals promote directed transmembrane protein import simultaneously via multiple channels of nuclear pores
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Krishna C. Mudumbi, Rafal Czapiewski, Andrew Ruba, Samuel L. Junod, Yichen Li, Wangxi Luo, Christina Ngo, Valentina Ospina, Eric C. Schirmer, and Weidong Yang
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Science - Abstract
The contribution of central and peripheral channels of nuclear pores to transport of transmembrane proteins is unclear. Here the authors show that most inner nuclear membrane proteins use only peripheral channels, but some extend nuclear localization signals into the central channel for directed nuclear transport.
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- 2020
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10. STING nuclear partners contribute to innate immune signaling responses
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Charles R. Dixon, Poonam Malik, Jose I. de las Heras, Natalia Saiz-Ros, Flavia de Lima Alves, Mark Tingey, Eleanor Gaunt, A. Christine Richardson, David A. Kelly, Martin W. Goldberg, Greg J. Towers, Weidong Yang, Juri Rappsilber, Paul Digard, and Eric C. Schirmer
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Molecular physiology ,Immunology ,Virology ,Cell biology ,Science - Abstract
Summary: STimulator of INterferon Genes (STING) is an adaptor for cytoplasmic DNA sensing by cGAMP/cGAS that helps trigger innate immune responses (IIRs). Although STING is mostly localized in the ER, we find a separate inner nuclear membrane pool of STING that increases mobility and redistributes to the outer nuclear membrane upon IIR stimulation by transfected dsDNA or dsRNA mimic poly(I:C). Immunoprecipitation of STING from isolated nuclear envelopes coupled with mass spectrometry revealed a distinct nuclear envelope-STING proteome consisting of known nuclear membrane proteins and enriched in DNA- and RNA-binding proteins. Seventeen of these nuclear envelope STING partners are known to bind direct interactors of IRF3/7 transcription factors, and testing a subset of these revealed STING partners SYNCRIP, MEN1, DDX5, snRNP70, RPS27a, and AATF as novel modulators of dsDNA-triggered IIRs. Moreover, we find that SYNCRIP is a novel antagonist of the RNA virus, influenza A, potentially shedding light on reports of STING inhibition of RNA viruses.
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- 2021
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11. Lamin A molecular compression and sliding as mechanisms behind nucleoskeleton elasticity
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Alex A. Makarov, Juan Zou, Douglas R. Houston, Christos Spanos, Alexandra S. Solovyova, Cristina Cardenal-Peralta, Juri Rappsilber, and Eric C. Schirmer
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Science - Abstract
Lamin A is critical for nuclear architecture but its structure and assembly are not fully understood. Here, the authors use quantitative cross-linking mass spectrometry to map intra- and intermolecular interactions within lamin homomers, providing insights into the molecular basis for lamin’s mechanical properties.
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- 2019
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12. The cell-wide web coordinates cellular processes by directing site-specific Ca2+ flux across cytoplasmic nanocourses
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Jingxian Duan, Jorge Navarro-Dorado, Jill H. Clark, Nicholas P. Kinnear, Peter Meinke, Eric C. Schirmer, and A. Mark Evans
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Science - Abstract
Although calcium signals are known to be critical for many cellular processes, how signaling elicits specific functions remains unclear. In visually striking work, Duan et al. reveal that networks of cytoplasmic nanocourses orchestrate cell activity by directing site-specific calcium signals.
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- 2019
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13. Tm7sf2 Disruption Alters Radial Gene Positioning in Mouse Liver Leading to Metabolic Defects and Diabetes Characteristics
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Leonardo Gatticchi, Jose I. de las Heras, Aishwarya Sivakumar, Nikolaj Zuleger, Rita Roberti, and Eric C. Schirmer
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nuclear envelope ,Tm7sf2 ,NET47 ,genome organization ,tissue specificity ,Biology (General) ,QH301-705.5 - Abstract
Tissue-specific patterns of radial genome organization contribute to genome regulation and can be established by nuclear envelope proteins. Studies in this area often use cancer cell lines, and it is unclear how well such systems recapitulate genome organization of primary cells or animal tissues; so, we sought to investigate radial genome organization in primary liver tissue hepatocytes. Here, we have used a NET47/Tm7sf2–/– liver model to show that manipulating one of these nuclear membrane proteins is sufficient to alter tissue-specific gene positioning and expression. Dam-LaminB1 global profiling in primary liver cells shows that nearly all the genes under such positional regulation are related to/important for liver function. Interestingly, Tm7sf2 is a paralog of the HP1-binding nuclear membrane protein LBR that, like Tm7sf2, also has an enzymatic function in sterol reduction. Fmo3 gene/locus radial mislocalization could be rescued with human wild-type, but not TM7SF2 mutants lacking the sterol reductase function. One central pathway affected is the cholesterol synthesis pathway. Within this pathway, both Cyp51 and Msmo1 are under Tm7sf2 positional and expression regulation. Other consequences of the loss of Tm7sf2 included weight gain, insulin sensitivity, and reduced levels of active Akt kinase indicating additional pathways under its regulation, several of which are highlighted by mispositioning genes. This study emphasizes the importance for tissue-specific radial genome organization in tissue function and the value of studying genome organization in animal tissues and primary cells over cell lines.
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- 2020
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14. Le sein et les malformations thoraciques : stratégie chirurgicale et implants
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J.-P. Chavoin, S. Gandolfi, P. Leyx, F. Facchini, C. Schirmer, J.-L. Grolleau, E. Lupon, and B. Chaput
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Surgery - Published
- 2022
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15. A multistage sequencing strategy pinpoints novel candidate alleles for Emery-Dreifuss muscular dystrophy and supports gene misregulation as its pathomechanism
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Peter Meinke, Alastair R.W. Kerr, Rafal Czapiewski, Jose I. de las Heras, Charles R. Dixon, Elizabeth Harris, Heike Kölbel, Francesco Muntoni, Ulrike Schara, Volker Straub, Benedikt Schoser, Manfred Wehnert, and Eric C. Schirmer
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Medicine ,Medicine (General) ,R5-920 - Abstract
Background: As genome-wide approaches prove difficult with genetically heterogeneous orphan diseases, we developed a new approach to identify candidate genes. We applied this to Emery-Dreifuss muscular dystrophy (EDMD), characterised by early onset contractures, slowly progressive muscular wasting, and life-threatening heart conduction disturbances with wide intra- and inter-familial clinical variability. Roughly half of EDMD patients are linked to six genes encoding nuclear envelope proteins, but the disease mechanism remains unclear because the affected proteins function in both cell mechanics and genome regulation. Methods: A primer library was generated to test for mutations in 301 genes from four categories: (I) all known EDMD-linked genes; (II) genes mutated in related muscular dystrophies; (III) candidates generated by exome sequencing in five families; (IV) functional candidates — other muscle nuclear envelope proteins functioning in mechanical/genome processes affected in EDMD. This was used to sequence 56 unlinked patients with EDMD-like phenotype. Findings: Twenty-one patients could be clearly assigned: 18 with mutations in genes of similar muscular dystrophies; 3 with previously missed mutations in EDMD-linked genes. The other categories yielded novel candidate genes, most encoding nuclear envelope proteins with functions in gene regulation. Interpretation: Our multi-pronged approach identified new disease alleles and many new candidate EDMD genes. Their known functions strongly argue the EDMD pathomechanism is from altered gene regulation and mechanotransduction due to connectivity of candidates from the nuclear envelope to the plasma membrane. This approach highlights the value of testing for related diseases using primer libraries and may be applied for other genetically heterogeneous orphan diseases. Funding: The Wellcome Trust, Muscular Dystrophy UK, Medical Research Council, European Community's Seventh Framework Programme “Integrated European –omics research project for diagnosis and therapy in rare neuromuscular and neurodegenerative diseases (NEUROMICS)”. Keywords: Emery-Dreifuss muscular dystrophy, Nuclear envelope, Nuclear envelope transmembrane protein, primer library, Orphan disease
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- 2020
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16. Spatial Genome Organization: From Development to Disease
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Aishwarya Sivakumar, Jose I. de las Heras, and Eric C. Schirmer
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genome organization ,LAD ,TAD ,CTCF ,cohesin ,development ,Biology (General) ,QH301-705.5 - Abstract
Every living organism, from bacteria to humans, contains DNA encoding anything from a few hundred genes in intracellular parasites such as Mycoplasma, up to several tens of thousands in many higher organisms. The first observations indicating that the nucleus had some kind of organization were made over a hundred years ago. Understanding of its significance is both limited and aided by the development of techniques, in particular electron microscopy, fluorescence in situ hybridization, DamID and most recently HiC. As our knowledge about genome organization grows, it becomes apparent that the mechanisms are conserved in evolution, even if the individual players may vary. These mechanisms involve DNA binding proteins such as histones, and a number of architectural proteins, some of which are very much conserved, with some others having diversified and multiplied, acquiring specific regulatory functions. In this review we will look at the principles of genome organization in a hierarchical manner, from DNA packaging to higher order genome associations such as TADs, and the significance of radial positioning of genomic loci. We will then elaborate on the dynamics of genome organization during development, and how genome architecture plays an important role in cell fate determination. Finally, we will discuss how misregulation can be a factor in human disease.
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- 2019
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17. Repo-Man/PP1 regulates heterochromatin formation in interphase
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Inês J. de Castro, James Budzak, Maria L. Di Giacinto, Lorena Ligammari, Ezgi Gokhan, Christos Spanos, Daniela Moralli, Christine Richardson, Jose I. de las Heras, Silvia Salatino, Eric C. Schirmer, Katharine S. Ullman, Wendy A. Bickmore, Catherine Green, Juri Rappsilber, Sarah Lamble, Martin W. Goldberg, Veronica Vinciotti, and Paola Vagnarelli
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Science - Abstract
Repo-Man is a chromosome-binding subunit of protein phosphatase 1 to regulate mitosis. Here, de Castro and colleagues show that Repo-Man also regulates heterochromatin during interphase, and regulates gene repression and chromatin organization.
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- 2017
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18. Single-point single-molecule FRAP distinguishes inner and outer nuclear membrane protein distribution
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Krishna C Mudumbi, Eric C Schirmer, and Weidong Yang
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Science - Abstract
Nuclear envelope transmembrane proteins (NETs) can reside in the outer or inner nuclear membrane, but distinguishing which membrane they reside in, and their translocation rate, is technically challenging. Here the authors develop a FRAP-based super-resolution microscopy method to obtain this information for several NETs.
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- 2016
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19. Chemical Interrogation of Nuclear Size Identifies Compounds with Cancer Cell Line-Specific Effects on Migration and Invasion
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Sylvain Tollis, Andrea Rizzotto, Nhan T. Pham, Sonja Koivukoski, Aishwarya Sivakumar, Steven Shave, Jan Wildenhain, Nikolaj Zuleger, Jeremy T. Keys, Jayne Culley, Yijing Zheng, Jan Lammerding, Neil O. Carragher, Valerie G. Brunton, Leena Latonen, Manfred Auer, Mike Tyers, and Eric C. Schirmer
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Male ,nuclear size regulation ,cell migration ,Prostatic Neoplasms ,General Medicine ,Adenocarcinoma ,Biochemistry ,Cell Movement ,Cell Line, Tumor ,chemical screen ,Humans ,metastasis ,Molecular Medicine ,Neoplasm Invasiveness - Abstract
Background: Lower survival rates for many cancer types correlate with changes in nuclear size/scaling in a tumor-type/tissue-specific manner. Hypothesizing that such changes might confer an advantage to tumor cells, we aimed at the identification of commercially available compounds to guide further mechanistic studies. We therefore screened for Food and Drug Administration (FDA)/European Medicines Agency (EMA)-approved compounds that reverse the direction of characteristic tumor nuclear size changes in PC3, HCT116, and H1299 cell lines reflecting, respectively, prostate adenocarcinoma, colonic adenocarcinoma, and small-cell squamous lung cancer. Results: We found distinct, largely nonoverlapping sets of compounds that rectify nuclear size changes for each tumor cell line. Several classes of compounds including, e.g., serotonin uptake inhibitors, cyclo-oxygenase inhibitors, β-adrenergic receptor agonists, and Na +/K + ATPase inhibitors, displayed coherent nuclear size phenotypes focused on a particular cell line or across cell lines and treatment conditions. Several compounds from classes far afield from current chemotherapy regimens were also identified. Seven nuclear size-rectifying compounds selected for further investigation all inhibited cell migration and/or invasion. Conclusions: Our study provides (a) proof of concept that nuclear size might be a valuable target to reduce cell migration/invasion in cancer treatment and (b) the most thorough collection of tool compounds to date reversing nuclear size changes specific to individual cancer-type cell lines. Although these compounds still need to be tested in primary cancer cells, the cell line-specific nuclear size and migration/invasion responses to particular drug classes suggest that cancer type-specific nuclear size rectifiers may help reduce metastatic spread.
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- 2022
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20. Maryland Port Administration, Dundalk Marine Terminal: Resiliency for an Active RO/RO Terminal
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John C. Schirmer and Steven W. Johnson
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- 2022
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21. [Breasts and congenital chest-wall deformities: Surgical strategy with 3D implants]
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J-P, Chavoin, S, Gandolfi, P, Leyx, F, Facchini, C, Schirmer, J-L, Grolleau, E, Lupon, and B, Chaput
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Elastomers ,Funnel Chest ,Mammaplasty ,Humans ,Female ,Breast ,Poland Syndrome ,Prostheses and Implants - Abstract
Computer-aided design and manufacturing of custom-made elastomer implants leads from a CT scan to fill in with precision, a congenital chest wall congenital deformity, both bone (pectus excavatum) and muscle (Poland Syndrome), resulting in a natural repositioning of the breasts. We report our 25 years' experience in 301 women (234 Pectus+64 Poland). Parietal correction must always be done in first intention. It is common to have to carry out a second stage in women with an additional mammaplasty especially in the presence of insufficient glandular volume or a fairly frequently associated tuberous breast.
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- 2022
22. Host Vesicle Fusion Protein VAPB Contributes to the Nuclear Egress Stage of Herpes Simplex Virus Type-1 (HSV-1) Replication
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Natalia Saiz-Ros, Rafal Czapiewski, Ilaria Epifano, Andrew Stevenson, Selene K. Swanson, Charles R. Dixon, Dario B. Zamora, Marion McElwee, Swetha Vijayakrishnan, Christine A. Richardson, Li Dong, David A. Kelly, Lior Pytowski, Martin W. Goldberg, Laurence Florens, Sheila V. Graham, and Eric C. Schirmer
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nuclear envelope ,nuclear membrane protein ,herpes simplex virus-1 (HSV-1) ,vesicle fusion protein (VFP) ,VAPB ,nuclear egress ,Cytology ,QH573-671 - Abstract
The primary envelopment/de-envelopment of Herpes viruses during nuclear exit is poorly understood. In Herpes simplex virus type-1 (HSV-1), proteins pUL31 and pUL34 are critical, while pUS3 and some others contribute; however, efficient membrane fusion may require additional host proteins. We postulated that vesicle fusion proteins present in the nuclear envelope might facilitate primary envelopment and/or de-envelopment fusion with the outer nuclear membrane. Indeed, a subpopulation of vesicle-associated membrane protein-associated protein B (VAPB), a known vesicle trafficking protein, was present in the nuclear membrane co-locating with pUL34. VAPB knockdown significantly reduced both cell-associated and supernatant virus titers. Moreover, VAPB depletion reduced cytoplasmic accumulation of virus particles and increased levels of nuclear encapsidated viral DNA. These results suggest that VAPB is an important player in the exit of primary enveloped HSV-1 virions from the nucleus. Importantly, VAPB knockdown did not alter pUL34, calnexin or GM-130 localization during infection, arguing against an indirect effect of VAPB on cellular vesicles and trafficking. Immunogold-labelling electron microscopy confirmed VAPB presence in nuclear membranes and moreover associated with primary enveloped HSV-1 particles. These data suggest that VAPB could be a cellular component of a complex that facilitates UL31/UL34/US3-mediated HSV-1 nuclear egress.
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- 2019
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23. Anastomose esofagogástrica cervical em dois tempos: 5 anos de experiência do Hospital de Clínicas de Porto Alegre
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T. Cavazzola, Leandro, R. Gursk, Richard, C. Schirmer, Carlos, P. da Rosa, André Ricardo, Pesce, Guilherme, B. Telles, João Pedro, and P. Kruel, Cleber Dario
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óbito ,surgery ,Esophageal epidermoid carcinoma ,death ,leakage ,postoperative complications ,Carcinoma epidermóide de esôfago ,complicações pós-operatórias ,cirurgia ,anastomoses ,fístulas - Abstract
OBJECTIVE: Cervical esophagogastric anastomosis (CEA) is a common procedure used to restore the continuity of the digestive tract following curative or palliative surgery for esophageal cancer. At the HCPA, we carry out CEA procedures in two steps: first, we carry out a lateral cervical esophagostomy and position the esophageal substitute in the neck; second, after one week, the esophageal remnant is sutured to the esophageal substitute. The choice of esophageal substitute is made according to gastric pull-up (GP) or greater curvature gastric tube (GCGT), depending on the possibility of resection of the lesion. The objective of this paper is to describe the early results (up to 30 days) of delayed cervical esophagogastric anastomosis after resection or esophageal bypass procedures due to esophageal neoplasia. MATERIAL AND METHODS: Fifty-nine patients fulfilled the criteria for inclusion in our study, out of which there were 49 male and 55 white patients; the age average was of 51.5 years. Twenty-two patients were submitted to gastric pull-up. The risk factors for postoperative complications were similar for both groups. Tumor staging was the only difference between the two groups in preoperative examination; this difference was expected according to the criteria used for choosing the procedure. RESULTS: Seven patients (31.8%) of the GP group and in 9 patients (34.3%) from the GCGT group (RR 1.3; CI 95%: 0.5-3.0, P = 0.54) presented leakage. Two patients (9.1%) from the GP group and 1 (2.7%) from the GCGT group died (RR 3.4; CI 95%: 0.3-34.9, P = 0.54). One patient (4.5%) from the GP group and 7 (18.9%) patients from the GCGT group (RR 0.2; CI 95%: 0.1-1.8, P = 0.23) presented infections. There were no differences between the groups regarding occurrence of leakage, short-term postoperative death (until 30 days after surgery), and infections. CONCLUSIONS: Our results are similar to those of other services of reference for the treatment of esophageal cancer. In this study, we did not find any differences between the GP and GCGT groups regarding short-term postoperative complications., OBJETIVO: A anastomose esofagogástrica cervical é um procedimento utilizado para restaurar a continuidade do trato digestivo após cirurgias curativas ou paliativas para o câncer esofágico. O Grupo de Cirurgia do Esôfago, Estômago e Intestino Delgado do Hospital de Clínicas de Porto Alegre realiza o procedimento em 2 tempos cirúrgicos. No primeiro tempo, realiza-se uma esofagostomia cervical lateral e posiciona-se o substituto esofágico no pescoço. O segundo tempo é realizado uma semana após, com a sutura do esôfago remanescente no substituto elevado ao pescoço. Este substituto é escolhido entre os procedimentos de levantamento gástrico (LG) e tubo gástrico de grande curvatura (TGC), conforme a possibilidade ou não de ressecção da lesão esofágica. O objetivo do presente trabalho é de descrever os resultados precoces (até 30 dias) obtidos com a realização de anastomose esôfago-gástrica cervical retardada (postergada) após procedimento cirúrgico de ressecção ou bypass esofágico por neoplasia de esôfago. MATERIAIS E MÉTODOS: Cinqüenta e nove pacientes preencheram os critérios de inclusão, sendo 49 homens, 55 brancos, com uma média de idade de 51,5 anos. Vinte e dois pacientes realizaram cirurgia de levantamento gástrico. Os fatores de risco conhecidos para complicações pós-operatórias foram similares entre os dois grupos. A única diferença entre os grupos na avaliação pré-operatória foi o estágio do tumor, o que era esperado, tendo em vista os critérios usados para a escolha do procedimento. RESULTADOS: A fístula cervical foi detectada em sete pacientes (31,8%) do grupo LG e em nove pacientes (34,3%) do grupo TGC (RR 1,3; IC 95%: 0,5-3,0, P = 0.54). Dois pacientes (9,1%) do grupo LG e um paciente (2,7%) do grupo TGC foram a óbito (RR 3,4; IC 95%: 0,3-34,9, P = 0,54). As complicações infecciosas ocorreram em um paciente (4,5%) do grupo LG e 7 pacientes (18,9%) do grupo TGC (RR 0,2; IC 95%: 0,1-1,8, P = 0,23). Não houve diferenças entre os grupos, levando em conta a ocorrência de fístula cervical no pós-operatório, mortalidade hospitalar precoce (30 dias após a cirurgia) e infecções. CONCLUSÕES: Os dados apresentados nesta série são semelhantes a outros serviços de referência para o tratamento do câncer de esôfago, e nessa série não houve diferença entre os LG e TGC em relação às complicações no pós-operatório precoce.
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- 2022
24. O-054 Prospective study on embolization of intracranial aneurysms with the pipeline device (PREMIER study): 3-year results with the application of a specific flow-diverter occlusion classification
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R Hanel, G Cortez, D Lopes, P Nelson, A Siddiqui, P Jabbour, V Pereira, I István, O Zaidat, C Bettegowda, G Colby, M Mokin, C Schirmer, F Hellinger, C Given, T Krings, P Taussky, G Toth, J Fraser, M Chen, R Priest, P Kan, D Fiorella, D Frei, B Aagaard-Kienitz, O Diaz, A Malek, C Cawley, A Puri, and D Kallmes
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- 2022
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25. P-021 Interim safety and occlusion outcomes of endovascular treatment of very small intracranial aneurysms in the sterling registry
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B Jankowitz, R De Leacy, A Puri, R Starke, A Yoo, F Gariel, S Jahshan, Z Kulcsar, C Schirmer, C Chivot, J Howington, G Pero, T Yao, A Polifka, A Evans, and O Zaidat
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- 2022
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26. E-052 Transradial vs. transfemoral access for intraoperative cerebral angiography: equal procedural times for target vessel imaging
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P Hendrix, I Melamed, G Weiner, O Goren, and C Schirmer
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- 2022
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27. E-275 Mortality rates, complication rates, and length of stay of > 14,000 non-traumatic, non-acute subdural hematomas treated in the U.S. between 2016 – 2020: query of the premier healthcare database
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P Hendrix, I Melamed, O Goren, G Weiner, and C Schirmer
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- 2022
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28. E-054 Pulserider-assisted treatment of intracranial aneurysms in the sterling registry
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R De Leacy, A Puri, R Starke, B Jankowitz, A Yoo, F Gariel, S Jahshan, Z Kulcsar, C Schirmer, C Chivot, J Howington, G Pero, T Yao, A Polifka, A Evans, and O Zaidat
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- 2022
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29. O-052 The pennsylvania post-market multicenter experience with flow re-direction endoluminal device (FRED)
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M Salem, S Kvint, P Hendrix, F Al Saiegh, A Gajjar, O Goren, B Gross, P Jabbour, M Lang, C Schirmer, S Tjoumakaris, C Griessenauer, and J Burkhardt
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- 2022
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30. E-230 NIHSS surrogates as a predictor of 90-day functional outcome after mechanical thrombectomy for M2 middle cerebral artery occlusions
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M Collins, G Weiner, O Goren, S Dalal, I Melamed, C Schirmer, and P Hendrix
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- 2022
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31. Indução de aderência intrabdominal por prótese de retícula de polipropileno:: estudo experimental em ratos
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R. Gurski, Richard, C. Schirmer, Carlos, Wagner, Jeverson, L. Berlim, Gustavo, F. Müller, Marcelo, E. Beck, Plauto, Weidlich, Juliana, Teruchkin, Betina, V. Schwarzbold, Alexandre, S. M. Leite, Cristina, F. Tatsch, Mariana, Saueressig, Maurício, I. Edelweiss, Maria, and D. P. Kruel, Cleber
- Abstract
INTRODUCTION: The correction of groin hernias using a transperitoneal videolaparoscopic method with a polypropylene mesh is becoming increasingly common. This could lead to an increased incidence of adhesion formation.MATERIALS AND METHODS: The incidence of adhesions induced by mesh placement and by reperitonization was observed in 40 male adult Wistar rats, randomlyallocated to four groups of 10 rats (Group A = no mesh, no reperitonization; B = no mesh, reperitonization; C = mesh, no reperitonization; D = mesh and reperitonization). After opening the abdominal cavity, the iliac fossa was identified and a peritoneal opening, measuring about 2 by 2 cm, was done on the parietal wall. In the rats in which a polypropylene prosthesis was used, a piece of Marlex mesh, measuring about 1.5 by 1.5 cm was placed on the peritoneal opening. A simple suture was performed in the animals submitted to reperitonization, using a 5.0 monofilamentar polypropylene thread on a cardiovascular (atraumatic) needle. The animals were killed 15 days after the operation. Macroscopic analysis was done by an investigator blinded to intervention group. Fisher’s exact test and the c2 test were used for statistical analysis of the results. A P < 0.05 was considered as significant.RESULTS: Adhesions were significantly more common in the groups in which the prosthesis was placed (59% vs. 95%; P = 0.01), as well as in the groups in whichreperitonization was performed (58% vs. 100%; P = 0.03).CONCLUSIONS: The results suggest that polypropylene mesh placement and reperitonization are each independent factors that have a role in inducing the formationof adhesions., INTRODUÇÃO: A correção de hérnias na virilha através de um método videolaparoscópico transperitoneal está se tornando cada vez mais comum. Contudo,este método poderia levar a um aumento na incidência de formação de aderências.MATERIAIS E MÉTODOS: A incidência de aderências induzidas pela colocação de retícula e pela reperitonização foram observadas em 40 ratos Wistar adultos, machos, divididos aleatoriamente em quatro grupos com 10 ratos cada um (Grupo A = sem retícula, sem reperitonização; B = sem retícula, com reperitonização; C = com retícula, sem reperitonização; D = retícula e reperitonização). Após a abertura da cavidade abdominal, a fossa ilíaca foi identificada e fez-se uma abertura de aproximadamente 2 x 2 cm na parede parietal. Nos ratos em que uma prótese de polipropileno foi utilizada, uma retícula Marlex com 1,5 x 1,5 cm foi colocada sobre a abertura peritoneal. Nos outros animais, a reperitonização foi feita com sutura simples, utilizando-se fio de polipropileno monofilamentar 5.0 com uma agulha cardiovascular (atraumática). Os animais foram sacrificados 15 dias depois da operação. A análise macroscópica foi realizada por um investigador cego quanto ao grupo de origem dos animais. A análise estatística utilizou o teste exato de Fisher e o c2. Um P < 0,05 foi considerado significativo.RESULTADOS: As aderências foram significativamente mais comuns nos grupos nos quais a prótese foi utilizada (59% vs. 95%; P = 0,01), assim como nos gruposnos quais foi feita a reperitonização (58% vs. 100%; P = 0,03). CONCLUSÕES: Os resultados sugerem que a retícula de polipropileno e a reperitonização são fatores independentes entre si quanto à indução de formaçãode aderências.
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- 2022
32. Metabolic, Fibrotic, and Splicing Pathways Are All Altered in Emery-Dreifuss Muscular Dystrophy Spectrum Patients to Differing Degrees
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Jose I de las Heras, Vanessa Todorow, Lejla Krečinić-Balić, Stefan Hintze, Rafal Czapiewski, Shaun Webb, Benedikt Schoser, Peter Meinke, and Eric C Schirmer
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Genetics ,General Medicine ,Molecular Biology ,Genetics (clinical) - Abstract
Emery-Dreifuss muscular dystrophy (EDMD) is a genetically and clinically variable disorder. Previous attempts to use gene expression changes find its pathomechanism were unavailing, so we here engaged a functional pathway analysis. RNA-Seq was performed on cells from 10 patients diagnosed with an EDMD spectrum disease with different mutations in 7 genes. Upon comparing to controls, the pathway analysis revealed that multiple genes involved in fibrosis, metabolism, myogenic signaling, and splicing were affected in all patients. Splice variant analysis revealed alterations of muscle-specific variants for several important muscle genes. Deeper analysis of metabolic pathways revealed a reduction in glycolytic and oxidative metabolism and reduced numbers of mitochondria across a larger set of 14 EDMD patients and 7 controls. Intriguingly, the gene expression signatures segregated the patients into three subgroups whose distinctions could potentially relate to differences in clinical presentation. Finally, differential expression analysis of miRNAs changing in the patients similarly highlighted fibrosis, metabolism, and myogenic signaling pathways. This pathway approach revealed a clear EDMD signature that can both be used as the basis for establishing a biomarker panel specific to EDMD and direct further investigation into its pathomechanism. Furthermore, the segregation of specific gene changes into three distinct categories that appear to correlate with clinical presentation may be developed into prognostic biomarkers, though this will first require their testing in a wider set of patients with more clinical information.
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- 2022
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33. Mitotic post-translational modifications of histones promote chromatin compaction in vitro
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Alisa Zhiteneva, Juan Jose Bonfiglio, Alexandr Makarov, Thomas Colby, Paola Vagnarelli, Eric C. Schirmer, Ivan Matic, and William C. Earnshaw
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chromosome compaction ,histone modifications ,chromatin ,mitosis ,Biology (General) ,QH301-705.5 - Abstract
How eukaryotic chromosomes are compacted during mitosis has been a leading question in cell biology since the nineteenth century. Non-histone proteins such as condensin complexes contribute to chromosome shaping, but appear not to be necessary for mitotic chromatin compaction. Histone modifications are known to affect chromatin structure. As histones undergo major changes in their post-translational modifications during mitotic entry, we speculated that the spectrum of cell-cycle-specific histone modifications might contribute to chromosome compaction during mitosis. To test this hypothesis, we isolated core histones from interphase and mitotic cells and reconstituted chromatin with them. We used mass spectrometry to show that key post-translational modifications remained intact during our isolation procedure. Light, atomic force and transmission electron microscopy analysis showed that chromatin assembled from mitotic histones has a much greater tendency to aggregate than chromatin assembled from interphase histones, even under low magnesium conditions where interphase chromatin remains as separate beads-on-a-string structures. These observations are consistent with the hypothesis that mitotic chromosome formation is a two-stage process with changes in the spectrum of histone post-translational modifications driving mitotic chromatin compaction, while the action of non-histone proteins such as condensin may then shape the condensed chromosomes into their classic mitotic morphology.
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- 2017
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34. Anchoring a Leviathan: How the Nuclear Membrane Tethers the Genome
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Rafal eCzapiewski, Michael eRobson, and Eric C Schirmer
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Nuclear Envelope ,NET ,Peripheral heterochromatin ,gene position ,NE-chromatin interaction ,Genetics ,QH426-470 - Abstract
It is well established that the nuclear envelope has many distinct direct connections to chromatin that contribute to genome organization. The functional consequences of genome organization on gene regulation are less clear. Even less understood is how interactions of lamins and nuclear envelope transmembrane proteins (NETs) with chromatin can produce anchoring tethers that can withstand the physical forces of and on the genome. Chromosomes are the largest molecules in the cell, making megadalton protein structures like the nuclear pore complexes and ribosomes seem small by comparison. Thus to withstand strong forces from chromosome dynamics an anchoring tether is likely to be much more complex than a single protein-protein or protein-DNA interaction. Here we will briefly review known NE-genome interactions that likely contribute to spatial genome organization, postulate in the context of experimental data how these anchoring tethers contribute to gene regulation, and posit several hypotheses for the physical nature of these tethers that need to be investigated experimentally. Significantly, disruption of these anchoring tethers and the subsequent consequences for gene regulation could explain how mutations in nuclear envelope proteins cause diseases ranging from muscular dystrophy to lipodystrophy to premature ageing progeroid syndromes. The two favored hypotheses for nuclear envelope protein involvement in disease are 1) weakening nuclear and cellular mechanical stability, and 2) disrupting genome organization and gene regulation. Considerable experimental support has been obtained for both. The integration of both mechanical and gene expression defects in the disruption of anchoring tethers could provide a unifying hypothesis consistent with both.
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- 2016
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35. Neue Wege in der Hörrehabilitation nach Cochleaimplantation
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M Röber, C Schirmer, C Völter, Stefan Dazert, K Bilda, and D Hinsen
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Digitalisierung ,medicine.medical_specialty ,medicine.medical_treatment ,Computerbasiertes Hörtraining ,Originalien ,03 medical and health sciences ,0302 clinical medicine ,Hearing ,medicine ,Humans ,030223 otorhinolaryngology ,Cochlear implantation ,Telerehabilitation ,Gynecology ,Internet ,Rehabilitation ,business.industry ,Digitalization ,Cochlear Implantation ,Aural rehabilitation ,Cochlear Implants ,Otorhinolaryngology ,Hörrehabilitation ,Head and neck surgery ,Speech Perception ,business ,030217 neurology & neurosurgery ,Computer-based auditory training - Abstract
After cochlear implantation, auditory and speech training is usually necessary. Up until now, this has been performed on an out- or inpatient basis in direct contact with a therapist. Due to technical advances but also particularly because of an increasing use of digital media and a desire for mobility and independence, the demand for digital training programs is increasing in the field of hearing rehabilitation.In a first step, the most important elements of auditory training were determined on the basis of commonly used auditory and speech processing models, and the core features of a computer-based teletherapeutic hearing platform were defined. This process considered motivational elements and adaptive mechanisms as regularly used in educational and speech and language therapy. In a second step, an initial prototype of the "train2hear" teletherapeutic hearing platform was developed by an interdisciplinary research team.The core of the train2hear platform is an initial analysis according to the International Classification of Functioning, Disability, and Health (ICF), on the basis of which an individual training plan is designed. Various adaptive mechanisms enable the level of difficulty to be continually adapted to the individual user's learning progress. A videoconference tool enables contact between the patient and the therapist.The train2hear platform represents a first prototype of a computer-based auditory rehabilitation program in German. Further evaluation and development in a clinical study are needed to determine the feasibility and efficacy of the platform.EINLEITUNG: Nach einer Cochleaimplantation (CI) ist i.d.R. ein Hör- und Sprachtraining erforderlich, das bislang entweder ambulant oder stationär im direkten Kontakt mit einem Therapeuten erfolgt. Bedingt durch technische Weiterentwicklungen, aber vor allem durch die zunehmende Nutzung digitaler Medien und dem Wunsch nach Mobilität und Selbständigkeit steigt der Bedarf an digitalen Trainingsprogrammen auch im Rahmen der Hörrehabilitation.In einem ersten Schritt wurden entsprechend den gängigen Hör- und Sprachverarbeitungsmodellen die wichtigsten Elemente eines Hörtrainings definiert und die Kernbausteine für eine computerbasierte teletherapeutische Hörplattform bestimmt. Dabei wurden lerntherapeutisch orientierte Elemente der Motivationsförderung sowie Mechanismen der Adaptivität, wie sie im Rahmen der logopädischen Therapie eingesetzt werden, berücksichtigt. In einem zweiten Schritt erfolgte die Entwicklung eines ersten Prototyps der teletherapeutischen Hörplattform „train2hear“ im Rahmen eines interdisziplinären Forschungsprojektes.Kernbaustein des vorgestellten „train2hear“ Hörtrainings ist eine an die „International Classification of Functioning, Disability, and Health“ (ICF) angelehnte Eingangsanalyse, aufgrund derer ein individueller Trainingsplan erstellt wird. Verschiedene Adaptivitätsmechanismen dienen dazu, den Schwierigkeitsgrad kontinuierlich an den individuellen Lernfortschritt des Nutzers anzupassen. Ein teletherapeutisches Videotool ermöglicht den Austausch mit dem Therapeuten vor Ort.Die vorgestellte Plattform „train2hear“ stellt einen ersten deutschsprachigen Prototyp einer computerbasierten Hörrehabilitation dar. Dieser muss nun im Rahmen einer klinischen Studie im Hinblick auf die Anwendbarkeit und Effektivität evaluiert und weiterentwickelt werden.
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- 2020
36. Computerbasiertes Hörtraining in der Hörrehabilitation Erwachsener nach Cochleaimplantation
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C Stöckmann, C Schirmer, Stefan Dazert, and C Völter
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Gynecology ,03 medical and health sciences ,medicine.medical_specialty ,0302 clinical medicine ,Otorhinolaryngology ,business.industry ,030220 oncology & carcinogenesis ,Head and neck surgery ,Computer based ,Medicine ,030223 otorhinolaryngology ,Cochlear implantation ,business - Abstract
Die Digitalisierung ist mittlerweile im Alltag, auch der Alteren, angekommen. Die Horrehabilitation nach Cochleaimplantation (CI) findet in Deutschland jedoch meist noch vor Ort in spezialisierten Zentren statt. In den vergangenen Jahren erschienen zahlreiche computerbasierte Hortrainingsprogramme (CBAT) v. a. fur Horgerate-, aber auch einzelne fur CI-Trager. Die vorliegende Arbeit soll einen Uberblick uber derzeit verfugbare CBAT sowie ihre Wirksamkeit geben. Englisch- und deutschsprachige CBAT fur erwachsene CI-Trager wurden in einer auf Google basierten Suche und in Programmen im App Store und Play Store recherchiert und im Hinblick auf Therapieinhalte und die Programmgestaltung analysiert. Anschliesend erfolgte eine systematische Literaturrecherche von 2000 bis 2019 zu Studien uber CBAT fur erwachsene CI-Trager in den Datenbanken PubMed, LIVIVO und Google Scholar. Meist sind die vorliegenden CBAT als zusatzliches Therapieangebot zur bestehenden face-to-face Therapie konzipiert. Die Programminhalte unterscheiden sich vor allem hinsichtlich der Aufgabenkomplexitat und -quantitat, der grafischen Gestaltung, der zeitlichen Vorgabe und des Endgerates. Im Gegensatz zu den deutschsprachigen weisen die englischen Programme zum Teil bereits gute Adaptivitats- und Feedbackkonzepte auf. Wissenschaftliche Untersuchungen zur Effektivitat liegen uberwiegend zu den englischsprachigen und meist nur zu einzelnen Therapiemodulen vor. Allen Untersuchungen gemeinsam ist eine kurzzeitige Verbesserung auditiver Teilfunktionen nach dem Training. Die Studienqualitat ist jedoch bislang als gering einzustufen, Follow-up-Untersuchungen finden sich nur in zwei Fallen. CBAT konnten eine Moglichkeit der Horrehabilitation von CI-Patienten sein. Derzeit fehlt es im deutschsprachigen Raum jedoch noch an Trainingsplattformen, die als Alternative zur Therapie vor Ort konzipiert sind. Auch liegen keine groseren Wirksamkeitsstudien zu Kurz-, Langzeit- sowie Transfereffekten vor.
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- 2020
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37. TMEM120A and B: Nuclear Envelope Transmembrane Proteins Important for Adipocyte Differentiation.
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Dzmitry G Batrakou, Jose I de Las Heras, Rafal Czapiewski, Rabah Mouras, and Eric C Schirmer
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Medicine ,Science - Abstract
Recent work indicates that the nuclear envelope is a major signaling node for the cell that can influence tissue differentiation processes. Here we present two nuclear envelope trans-membrane proteins TMEM120A and TMEM120B that are paralogs encoded by the Tmem120A and Tmem120B genes. The TMEM120 proteins are expressed preferentially in fat and both are induced during 3T3-L1 adipocyte differentiation. Knockdown of one or the other protein altered expression of several genes required for adipocyte differentiation, Gata3, Fasn, Glut4, while knockdown of both together additionally affected Pparg and Adipoq. The double knockdown also increased the strength of effects, reducing for example Glut4 levels by 95% compared to control 3T3-L1 cells upon pharmacologically induced differentiation. Accordingly, TMEM120A and B knockdown individually and together impacted on adipocyte differentiation/metabolism as measured by lipid accumulation through binding of Oil Red O and coherent anti-Stokes Raman scattering microscopy (CARS). The nuclear envelope is linked to several lipodystrophies through mutations in lamin A; however, lamin A is widely expressed. Thus it is possible that the TMEM120A and B fat-specific nuclear envelope transmembrane proteins may play a contributory role in the tissue-specific pathology of this disorder or in the wider problem of obesity.
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- 2015
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38. NET23/STING promotes chromatin compaction from the nuclear envelope.
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Poonam Malik, Nikolaj Zuleger, Jose I de las Heras, Natalia Saiz-Ros, Alexandr A Makarov, Vassiliki Lazou, Peter Meinke, Martin Waterfall, David A Kelly, and Eric C Schirmer
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Medicine ,Science - Abstract
Changes in the peripheral distribution and amount of condensed chromatin are observed in a number of diseases linked to mutations in the lamin A protein of the nuclear envelope. We postulated that lamin A interactions with nuclear envelope transmembrane proteins (NETs) that affect chromatin structure might be altered in these diseases and so screened thirty-one NETs for those that promote chromatin compaction as determined by an increase in the number of chromatin clusters of high pixel intensity. One of these, NET23 (also called STING, MITA, MPYS, ERIS, Tmem173), strongly promoted chromatin compaction. A correlation between chromatin compaction and endogenous levels of NET23/STING was observed for a number of human cell lines, suggesting that NET23/STING may contribute generally to chromatin condensation. NET23/STING has separately been found to be involved in innate immune response signaling. Upon infection cells make a choice to either apoptose or to alter chromatin architecture to support focused expression of interferon genes and other response factors. We postulate that the chromatin compaction induced by NET23/STING may contribute to this choice because the cells expressing NET23/STING eventually apoptose, but the chromatin compaction effect is separate from this as the condensation was still observed when cells were treated with Z-VAD to block apoptosis. NET23/STING-induced compacted chromatin revealed changes in epigenetic marks including changes in histone methylation and acetylation. This indicates a previously uncharacterized nuclear role for NET23/STING potentially in both innate immune signaling and general chromatin architecture.
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- 2014
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39. Tm7sf2 Disruption Alters Radial Gene Positioning in Mouse Liver Leading to Metabolic Defects and Diabetes Characteristics
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Nikolaj Zuleger, Jose I. de las Heras, Eric C. Schirmer, Aishwarya Sivakumar, Rita Roberti, and Leonardo Gatticchi
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Tm7sf2 ,Mutant ,Locus (genetics) ,Cell Biology ,nuclear envelope ,tissue specificity ,Biology ,Sterol ,NET47 ,Cell biology ,Cell and Developmental Biology ,medicine.anatomical_structure ,lcsh:Biology (General) ,Cell culture ,medicine ,genome organization ,Liver function ,Nuclear membrane ,Gene ,lcsh:QH301-705.5 ,Original Research ,Genomic organization ,Developmental Biology - Abstract
Tissue-specific patterns of radial genome organization contribute to genome regulation and can be established by nuclear envelope proteins. Studies in this area often use cancer cell lines, and it is unclear how well such systems recapitulate genome organization of primary cells or animal tissues; so, we sought to investigate radial genome organization in primary liver tissue hepatocytes. Here, we have used a NET47/Tm7sf2–/– liver model to show that manipulating one of these nuclear membrane proteins is sufficient to alter tissue-specific gene positioning and expression. Dam-LaminB1 global profiling in primary liver cells shows that nearly all the genes under such positional regulation are related to/important for liver function. Interestingly, Tm7sf2 is a paralog of the HP1-binding nuclear membrane protein LBR that, like Tm7sf2, also has an enzymatic function in sterol reduction. Fmo3 gene/locus radial mislocalization could be rescued with human wild-type, but not TM7SF2 mutants lacking the sterol reductase function. One central pathway affected is the cholesterol synthesis pathway. Within this pathway, both Cyp51 and Msmo1 are under Tm7sf2 positional and expression regulation. Other consequences of the loss of Tm7sf2 included weight gain, insulin sensitivity, and reduced levels of active Akt kinase indicating additional pathways under its regulation, several of which are highlighted by mispositioning genes. This study emphasizes the importance for tissue-specific radial genome organization in tissue function and the value of studying genome organization in animal tissues and primary cells over cell lines.
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- 2020
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40. The NEMP family supports metazoan fertility and nuclear envelope stiffness
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Andrea Jurisicova, Yonit Tsatskis, Rod Bremner, John R. B. Perry, Kyunga Kim, Brian Ciruna, Daniel Potter, Dorothea Godt, Wade H. Dunham, Yu Sun, Michael I. Robson, Shu Wu, Robyn Rosenfeld, Julie A. Brill, Karen Krchma, Tim Schedl, Anne-Claude Gingras, Joel Pearson, Curtis W. Boswell, Helen McNeill, Kyunghee Choi, Laurence Pelletier, Didier Hodzic, Jin Meng, Lacramioara Fabian, Yi Qu, Ariz Mohammad, Eric C. Schirmer, João Gonçalves, Jun Wu, Xian Wang, Tsatskis, Yonit [0000-0003-2580-0728], Rosenfeld, Robyn [0000-0001-6853-2036], Qu, Yi [0000-0002-1420-7753], Kim, Kyunga [0000-0003-3218-5081], Mohammad, Ariz [0000-0002-2807-412X], Wang, Xian [0000-0002-1501-2544], Robson, Michael I [0000-0003-1126-3538], Gonçalves, João [0000-0001-5329-0986], Hodzic, Didier [0000-0002-2113-8936], Gingras, Anne-Claude [0000-0002-6090-4437], Sun, Yu [0000-0001-7895-0741], Godt, Dorothea [0000-0003-3821-5181], Schedl, Tim [0000-0003-2148-2996], Ciruna, Brian [0000-0001-7918-0953], Choi, Kyunghee [0000-0002-9634-9375], Perry, John RB [0000-0001-6483-3771], Bremner, Rod [0000-0001-9184-7212], Schirmer, Eric C [0000-0003-2635-1338], Brill, Julie A [0000-0002-5925-9901], Jurisicova, Andrea [0000-0003-2166-4298], McNeill, Helen [0000-0003-1126-5154], and Apollo - University of Cambridge Repository
- Subjects
Aging ,Sterility ,media_common.quotation_subject ,1.1 Normal biological development and functioning ,Fertility ,3101 Biochemistry and Cell Biology ,Germline ,3105 Genetics ,03 medical and health sciences ,Homologous chromosome ,Genetics ,1 Underpinning research ,Zebrafish ,Caenorhabditis elegans ,Research Articles ,030304 developmental biology ,media_common ,Genetic association ,0303 health sciences ,Multidisciplinary ,biology ,Contraception/Reproduction ,030302 biochemistry & molecular biology ,Human Genome ,SciAdv r-articles ,biology.organism_classification ,Cell biology ,Membrane protein ,FOS: Biological sciences ,Generic health relevance ,Research Article ,31 Biological Sciences ,Biotechnology - Abstract
Loss of Nemp leads to softening of the germline nuclear envelope and loss of fertility., Human genome-wide association studies have linked single-nucleotide polymorphisms (SNPs) in NEMP1 (nuclear envelope membrane protein 1) with early menopause; however, it is unclear whether NEMP1 has any role in fertility. We show that whole-animal loss of NEMP1 homologs in Drosophila, Caenorhabditis elegans, zebrafish, and mice leads to sterility or early loss of fertility. Loss of Nemp leads to nuclear shaping defects, most prominently in the germ line. Biochemical, biophysical, and genetic studies reveal that NEMP proteins support the mechanical stiffness of the germline nuclear envelope via formation of a NEMP-EMERIN complex. These data indicate that the germline nuclear envelope has specialized mechanical properties and that NEMP proteins play essential and conserved roles in fertility.
- Published
- 2020
- Full Text
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41. [Computer-based auditory training for hearing rehabilitation of adult cochlear implant users]
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C, Völter, C, Schirmer, C, Stöckmann, and S, Dazert
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Adult ,Cochlear Implants ,Hearing ,Germany ,Speech Perception ,Humans ,Cochlear Implantation - Abstract
Digitalization has become a part of everyday life and digital applications offer an opportunity to promote health. In Germany, hearing rehabilitation after cochlear implantation (CI) typically takes place in specialized audiology centers. However, a variety of new auditory training programs have been developed and although most are for hearing aid users, some are suitable for CI patients. The purpose of this study is to give an overview of CBAT schedules and their effectiveness.Currently available English and German CBAT programs for adult CI users identified in searches of Google, Google App Store, and Google Play Store were analyzed. A systematic literature search on studies dealing with CBAT in adult CI recipients from 2000 to 2019 was performed in PubMed, LIVIVO, and Google Scholar.German and English CBAT for adult hearing aid and CI users are generally intended to complement face-to-face therapies. The content of the programs differs primarily in terms of complexity and quantity of tasks, graphic design, allowed time and the device used. In contrast to the nine available German programs, some of the English CBAT include advanced concepts of adaptivity and feedback. Studies on the effectiveness of CBAT have mainly been conducted for the English versions and generally analyze only individual therapeutic subfunctions. All investigations show a short-term improvement of the auditory subfunction shortly after training. Unfortunately, the quality of the studies is low and follow-up results are only available in two cases.CBAT programs might be an effective option for auditory rehabilitation in CI patients. However, suitable German-language programs conceived as an alternative to face-to-face training and studies on longterm effects of CBAT are still lacking.HINTERGRUND: Die Digitalisierung ist mittlerweile im Alltag, auch der Älteren, angekommen. Die Hörrehabilitation nach Cochleaimplantation (CI) findet in Deutschland jedoch meist noch vor Ort in spezialisierten Zentren statt. In den vergangenen Jahren erschienen zahlreiche computerbasierte Hörtrainingsprogramme (CBAT) v. a. für Hörgeräte-, aber auch einzelne für CI-Träger. Die vorliegende Arbeit soll einen Überblick über derzeit verfügbare CBAT sowie ihre Wirksamkeit geben.Englisch- und deutschsprachige CBAT für erwachsene CI-Träger wurden in einer auf Google basierten Suche und in Programmen im App Store und Play Store recherchiert und im Hinblick auf Therapieinhalte und die Programmgestaltung analysiert. Anschließend erfolgte eine systematische Literaturrecherche von 2000 bis 2019 zu Studien über CBAT für erwachsene CI-Träger in den Datenbanken PubMed, LIVIVO und Google Scholar.Meist sind die vorliegenden CBAT als zusätzliches Therapieangebot zur bestehenden face-to-face Therapie konzipiert. Die Programminhalte unterscheiden sich vor allem hinsichtlich der Aufgabenkomplexität und -quantität, der grafischen Gestaltung, der zeitlichen Vorgabe und des Endgerätes. Im Gegensatz zu den deutschsprachigen weisen die englischen Programme zum Teil bereits gute Adaptivitäts- und Feedbackkonzepte auf. Wissenschaftliche Untersuchungen zur Effektivität liegen überwiegend zu den englischsprachigen und meist nur zu einzelnen Therapiemodulen vor. Allen Untersuchungen gemeinsam ist eine kurzzeitige Verbesserung auditiver Teilfunktionen nach dem Training. Die Studienqualität ist jedoch bislang als gering einzustufen, Follow-up-Untersuchungen finden sich nur in zwei Fällen.CBAT könnten eine Möglichkeit der Hörrehabilitation von CI-Patienten sein. Derzeit fehlt es im deutschsprachigen Raum jedoch noch an Trainingsplattformen, die als Alternative zur Therapie vor Ort konzipiert sind. Auch liegen keine größeren Wirksamkeitsstudien zu Kurz-, Langzeit- sowie Transfereffekten vor.
- Published
- 2020
42. New concepts of CI rehabilitation
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L Weiler, C Schirmer, Stefan Dazert, D Kampmann, C Stöckmann, C Völter, and K Bilda
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medicine.medical_specialty ,Rehabilitation ,business.industry ,medicine.medical_treatment ,medicine ,Physical therapy ,business - Published
- 2020
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43. Neue Wege in der CI-Rehabilitation
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D Kampmann, Stefan Dazert, K Bilda, C Stöckmann, C Schirmer, L Weiler, and C Völter
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- 2020
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44. Monitoring of Saccharomyces cerevisiae viability by non-Faradaic impedance spectroscopy using interdigitated screen-printed platinum electrodes
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Katrin Rebatschek, Thomas Lamz, C. Schirmer, Alfred Kick, Juliane Posseckardt, and Michael Mertig
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Materials science ,Faradaic impedance ,Saccharomyces cerevisiae ,Analytical chemistry ,02 engineering and technology ,01 natural sciences ,Capacitance ,Materials Chemistry ,Electrical and Electronic Engineering ,Instrumentation ,biology ,Constant phase element ,010401 analytical chemistry ,Metals and Alloys ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,biology.organism_classification ,Yeast ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Dielectric spectroscopy ,Microelectrode ,Electrode ,Biophysics ,0210 nano-technology - Abstract
Interdigitated, screen-printed platinum microelectrodes are used for non-Faradaic impedance spectroscopy detection of viable Saccharomyces cerevisiae . The time dependence of the complex impedance of both living and heat-inactivated yeast cells immersed in plain medium or immobilized in agar is measured between 0.01 Hz and 1 MHz for 300 min. To understand the processes probed by the impedance measurement, an equivalent electrical circuit, containing a constant phase element, a charge transfer resistance and a suspension resistance, is established and analyzed. For both heat-inactivated and living yeast cells in plain medium, the suspension resistance increases over time caused by sedimentation of the yeast cells into the stray field of the electrodes. The measured increase is found to be larger for living cells than for heat-inactivated ones. The time dependence of the double-layer capacitance is rather dominated by the metabolic activity of living cells, but a possible impact of cell sedimentation cannot be completely neglected. In experiments carried out with cells immobilized in agar, cell sedimentation is suppressed, and thus, the time evolution of the double-layer capacitance is solely caused by metabolic active cells. Therefore, the time-dependent change of the double-layer capacitance can be used to directly monitor the viability of Saccharomyces cerevisiae in situ , since inactivated cells do not contribute to the signal generation in this case.
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- 2018
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45. A flow cytometry-based screen of nuclear envelope transmembrane proteins identifies NET4/Tmem53 as involved in stress-dependent cell cycle withdrawal.
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Nadia Korfali, Vlastimil Srsen, Martin Waterfall, Dzmitry G Batrakou, Vanja Pekovic, Christopher J Hutchison, and Eric C Schirmer
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Medicine ,Science - Abstract
Disruption of cell cycle regulation is one mechanism proposed for how nuclear envelope protein mutation can cause disease. Thus far only a few nuclear envelope proteins have been tested/found to affect cell cycle progression: to identify others, 39 novel nuclear envelope transmembrane proteins were screened for their ability to alter flow cytometry cell cycle/DNA content profiles when exogenously expressed. Eight had notable effects with seven increasing and one decreasing the 4N:2N ratio. We subsequently focused on NET4/Tmem53 that lost its effects in p53(-/-) cells and retinoblastoma protein-deficient cells. NET4/TMEM53 knockdown by siRNA altered flow cytometry cell cycle/DNA content profiles in a similar way as overexpression. NET4/TMEM53 knockdown did not affect total retinoblastoma protein levels, unlike nuclear envelope-associated proteins Lamin A and LAP2α. However, a decrease in phosphorylated retinoblastoma protein was observed along with a doubling of p53 levels and a 7-fold increase in p21. Consequently cells withdrew from the cell cycle, which was confirmed in MRC5 cells by a drop in the percentage of cells expressing Ki-67 antigen and an increase in the number of cells stained for ß-galactosidase. The ß-galactosidase upregulation suggests that cells become prematurely senescent. Finally, the changes in retinoblastoma protein, p53, and p21 resulting from loss of NET4/Tmem53 were dependent upon active p38 MAP kinase. The finding that roughly a fifth of nuclear envelope transmembrane proteins screened yielded alterations in flow cytometry cell cycle/DNA content profiles suggests a much greater influence of the nuclear envelope on the cell cycle than is widely held.
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- 2011
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46. Breaking the scale: how disrupting the karyoplasmic ratio gives cancer cells an advantage for metastatic invasion
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Eric C. Schirmer and Andrea Rizzotto
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ratio ,0301 basic medicine ,nuclear size ,Nuclear Envelope ,Cell ,Breast Neoplasms ,karyoplasmic ,Biology ,Biochemistry ,Metastasis ,Nuclear morphology ,03 medical and health sciences ,Breast cancer ,medicine ,cancer ,Humans ,lamin ,Neoplasm Invasiveness ,Neoplasm Metastasis ,skin and connective tissue diseases ,Lung cancer ,Nuclear Proteins ,Cancer ,medicine.disease ,NET ,030104 developmental biology ,medicine.anatomical_structure ,Immunology ,Cancer cell ,Cancer research ,Female ,sense organs ,Lamin - Abstract
Nuclear size normally scales with the size of the cell, but in cancer this ‘karyoplasmic ratio’ is disrupted. This is particularly so in more metastatic tumors where changes in the karyoplasmic ratio are used in both diagnosis and prognosis for several tumor types. However, the direction of nuclear size changes differs for particular tumor types: for example in breast cancer, larger nuclear size correlates with increased metastasis, while for lung cancer smaller nuclear size correlates with increased metastasis. Thus, there must be tissue-specific drivers of the nuclear size changes, but proteins thus far linked to nuclear size regulation are widely expressed. Notably, for these tumor types, ploidy changes have been excluded as the basis for nuclear size changes, and so, the increased metastasis is more likely to have a basis in the nuclear morphology change itself. We review what is known about nuclear size regulation and postulate how such nuclear size changes can increase metastasis and why the directionality can differ for particular tumor types.
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- 2017
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47. Chemical-Genetic Interrogation of Nuclear Size Control Reveals Cancer-Specific Effects on Cell Migration and Invasion
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Nhan T. Pham, Sarah Zheng, Nikolaj Zuleger, Andrea Rizzotto, Eric C. Schirmer, Manfred Auer, Mike Tyers, Valerie G. Brunton, Jan Lammerding, Jeremy Keys, Neil O. Carragher, Sylvain Tollis, Dzmitry G. Batrakou, Jayne Culley, and Jan Wildenhain
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0303 health sciences ,Monoamine oxidase ,Chemistry ,Cancer ,Cell migration ,medicine.disease ,Phenotype ,3. Good health ,03 medical and health sciences ,0302 clinical medicine ,Cell culture ,030220 oncology & carcinogenesis ,medicine ,Cancer research ,Serotonin Uptake Inhibitors ,Receptor ,Lung cancer ,030304 developmental biology - Abstract
Lower survival rates for many cancer types correlate with increases or decreases in nuclear size/scaling in a tumor-type/tissue-specific manner. Postulating that nuclear size changes confer a fitness advantage on tumor cells, we screened for FDA/EMA-approved compounds that reverse tumor nuclear size changes in cell lines from three such tumor types: prostate adenocarcinoma, colonic adenocarcinoma, and small-cell squamous lung cancer. We found distinct, largely non-overlapping sets of compounds that either rectify or exacerbate nuclear size changes for each tumor type. Nuclear size phenotypes across cell lines clustered particular classes of compounds including serotonin uptake inhibitors, cyclo-oxygenase inhibitors, beta-adrenergic receptor agonists, monoamine oxidase inhibitors, and Na+/K+ATPase inhibitors. Nearly all compounds selected for further investigation inhibited cell migration and/or invasion, suggesting that targeting nuclear size control pathways in chemotherapy regimens could improve patient survival.
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- 2020
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48. LANDSCAPE EVOLUTION AND STREAM TERRACES OF THE WHITEWATER RIVER VALLEY, MINNESOTA: PRELIMINARY RESULTS
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Daniel Gardner, Ronald C. Schirmer, Dylan Blumentritt, S. B. Penprase, Douglas J. Faulkner, Andrew D. Wickert, and Phillip H. Larson
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Hydrology ,River valley ,Geology - Published
- 2020
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49. A multistage sequencing strategy pinpoints novel candidate alleles for Emery-Dreifuss muscular dystrophy and supports gene misregulation as its pathomechanism
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Eric C. Schirmer, E. Harris, Ulrike Schara, Manfred Wehnert, Benedikt Schoser, Peter Meinke, Alastair R.W. Kerr, Francesco Muntoni, Heike Kölbel, Volker Straub, Rafal Czapiewski, Charles R. Dixon, and Jose I. de las Heras
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0301 basic medicine ,Candidate gene ,Research paper ,Nuclear envelope transmembrane protein ,primer library ,Medizin ,lcsh:Medicine ,Biology ,Genome ,General Biochemistry, Genetics and Molecular Biology ,Nuclear envelope ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Emery–Dreifuss muscular dystrophy ,Muscular dystrophy ,Muscle, Skeletal ,Gene ,Exome sequencing ,Alleles ,Genetics ,lcsh:R5-920 ,Genetic heterogeneity ,lcsh:R ,General Medicine ,medicine.disease ,Phenotype ,Muscular Dystrophy, Emery-Dreifuss ,3. Good health ,030104 developmental biology ,Orphan disease ,Gene Expression Regulation ,030220 oncology & carcinogenesis ,Emery-Dreifuss muscular dystrophy ,lcsh:Medicine (General) - Abstract
Background: As genome-wide approaches prove difficult with genetically heterogeneous orphan diseases, we developed a new approach to identify candidate genes. We applied this to Emery-Dreifuss muscular dystrophy (EDMD), characterised by early onset contractures, slowly progressive muscular wasting, and life-threatening heart conduction disturbances with wide intra- and inter-familial clinical variability. Roughly half of EDMD patients are linked to six genes encoding nuclear envelope proteins, but the disease mechanism remains unclear because the affected proteins function in both cell mechanics and genome regulation. Methods: A primer library was generated to test for mutations in 301 genes from four categories: (I) all known EDMD-linked genes; (II) genes mutated in related muscular dystrophies; (III) candidates generated by exome sequencing in five families; (IV) functional candidates — other muscle nuclear envelope proteins functioning in mechanical/genome processes affected in EDMD. This was used to sequence 56 unlinked patients with EDMD-like phenotype. Findings: Twenty-one patients could be clearly assigned: 18 with mutations in genes of similar muscular dystrophies; 3 with previously missed mutations in EDMD-linked genes. The other categories yielded novel candidate genes, most encoding nuclear envelope proteins with functions in gene regulation. Interpretation: Our multi-pronged approach identified new disease alleles and many new candidate EDMD genes. Their known functions strongly argue the EDMD pathomechanism is from altered gene regulation and mechanotransduction due to connectivity of candidates from the nuclear envelope to the plasma membrane. This approach highlights the value of testing for related diseases using primer libraries and may be applied for other genetically heterogeneous orphan diseases. Funding: The Wellcome Trust, Muscular Dystrophy UK, Medical Research Council, European Community's Seventh Framework Programme “Integrated European –omics research project for diagnosis and therapy in rare neuromuscular and neurodegenerative diseases (NEUROMICS)”. Keywords: Emery-Dreifuss muscular dystrophy, Nuclear envelope, Nuclear envelope transmembrane protein, primer library, Orphan disease
- Published
- 2020
50. EVALUATION AND APPLICATION OF GEOPHYSICAL METHODS IN IDENTIFYING POTENTIAL NATIVE AMERICAN EARTHEN MOUNDS IN THE UPPER MISSISSIPPI BASIN, USA
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Alexander T. Anton, Not Provided, Phillip H. Larson, Ronald C. Schirmer, Garry L. Running, Anna K. Wiitanen-Eggan, Luke Burds, and Andy Brown
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Native american ,Structural basin ,Archaeology ,Geology - Published
- 2020
- Full Text
- View/download PDF
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