463 results on '"Cárdenas, Paco"'
Search Results
2. A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions
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Dittami, Simon, Arboleda, Enrique, Auguet, Jean-Christophe, Bigalke, Arite, Briand, Enora, Cárdenas, Paco, Cardini, Ulisse, Decelle, Johan, Engelen, Ashwin, Eveillard, Damien, Gachon, Claire, Griffiths, Sarah, Harder, Tilmann, Kayal, Ehsan, Kazamia, Elena, Lallier, François, Medina, Mónica, Marzinelli, Ezequiel, Morganti, Teresa, Pons, Laura, Prado, Soizic, Valverde, José Pintado, Saha, Mahasweta, Selosse, Marc-Andre, Skillings, Derek, Stock, Willem, Sunagawa, Shinichi, Toulza, Eve, Vorobev, Alexey, Leblanc, Catherine, and Not, Fabrice
- Subjects
Quantitative Biology - Populations and Evolution - Abstract
Host-microbe interactions play crucial roles in marine ecosystems, but we still have very little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them, and their ecological consequences. The holobiont concept is a renewed paradigm in biology that can help describe and understand these complex systems. It posits that a host and its associated microbiota, living together in a long-lasting relationship, form the holobiont, and have to be studied together, as a coherent biological and functional unit, in order to understand the biology, ecology and evolution of the organisms. Here we discuss critical concepts and opportunities in marine holobiont research and identify key challenges in the field. We highlight the potential economic, sociological, and environmental impacts of the holobiont concept in marine biological, evolutionary, and environmental sciences with comparisons to terrestrial science whenever appropriate. A deeper understanding of such complex systems, however, will require further technological and conceptual advances. The most significant challenge will be to bridge functional research on simple and tractable model systems and global approaches. This will require scientists to work together as an (inter)active community in order to address, for instance, ecological and evolutionary questions and the roles of holobionts in biogeochemical cycles., Comment: PeerJ Preprints, Computer Science Preprints., 2019
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- 2019
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3. Genetic diversity, gene flow and hybridization in fan-shaped sponges (Phakellia spp.) in the North-East Atlantic deep sea
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Taboada, Sergi, Ríos, Pilar, Mitchell, Alex, Cranston, Alex, Busch, Kathrin, Tonzo, Vanina, Cárdenas, Paco, Sánchez, Francisco, Leiva, Carlos, Koutsouveli, Vasiliki, Cristobo, Javier, Xavier, Joana R., Hentschel, Ute, Rapp, Hans-Tore, Morrow, Christine, Drewery, Jim, Romero, Pedro E., Arias, Maria Belén, Whiting, Connie, and Riesgo, Ana
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- 2022
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4. Demosponge steroid biomarker 26-methylstigmastane provides evidence for Neoproterozoic animals
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Zumberge, J Alex, Love, Gordon D, Cárdenas, Paco, Sperling, Erik A, Gunasekera, Sunithi, Rohrssen, Megan, Grosjean, Emmanuelle, Grotzinger, John P, and Summons, Roger E
- Subjects
Life Below Water ,Animals ,Biological Evolution ,Biomarkers ,Fossils ,Phylogeny ,Porifera ,Steroids - Abstract
Sterane biomarkers preserved in ancient sedimentary rocks hold promise for tracking the diversification and ecological expansion of eukaryotes. The earliest proposed animal biomarkers from demosponges (Demospongiae) are recorded in a sequence around 100 Myr long of Neoproterozoic-Cambrian marine sedimentary strata from the Huqf Supergroup, South Oman Salt Basin. This C30 sterane biomarker, informally known as 24-isopropylcholestane (24-ipc), possesses the same carbon skeleton as sterols found in some modern-day demosponges. However, this evidence is controversial because 24-ipc is not exclusive to demosponges since 24-ipc sterols are found in trace amounts in some pelagophyte algae. Here, we report a new fossil sterane biomarker that co-occurs with 24-ipc in a suite of late Neoproterozoic-Cambrian sedimentary rocks and oils, which possesses a rare hydrocarbon skeleton that is uniquely found within extant demosponge taxa. This sterane is informally designated as 26-methylstigmastane (26-mes), reflecting the very unusual methylation at the terminus of the steroid side chain. It is the first animal-specific sterane marker detected in the geological record that can be unambiguously linked to precursor sterols only reported from extant demosponges. These new findings strongly suggest that demosponges, and hence multicellular animals, were prominent in some late Neoproterozoic marine environments at least extending back to the Cryogenian period.
- Published
- 2018
5. Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges
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Steffen, Karin, Indraningrat, Anak Agung Gede, Erngren, Ida, Haglöf, Jakob, Becking, Leontine E., Smidt, Hauke, Yashayaev, Igor, Kenchington, Ellen, Pettersson, Curt, Cárdenas, Paco, and Sipkema, Detmer
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- 2022
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6. Oogenesis and lipid metabolism in the deep-sea sponge Phakellia ventilabrum (Linnaeus, 1767)
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Koutsouveli, Vasiliki, Balgoma, David, Checa, Antonio, Hedeland, Mikael, Riesgo, Ana, and Cárdenas, Paco
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- 2022
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7. Screening for antibacterial and cytotoxic activities of Sri Lankan marine sponges through microfractionation : Isolation of bromopyrrole alkaloids from Stylissa massa
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Kosgahakumbura, Lakmini, Gamage, Jayani, Robertson, Luke, Muhammad, Taj, Hellman, Björn, Göransson, Ulf, Jayasinghe, Prabath, Hettiarachchi, Chamari, Cárdenas, Paco, Gunasekera, Sunithi, Kosgahakumbura, Lakmini, Gamage, Jayani, Robertson, Luke, Muhammad, Taj, Hellman, Björn, Göransson, Ulf, Jayasinghe, Prabath, Hettiarachchi, Chamari, Cárdenas, Paco, and Gunasekera, Sunithi
- Abstract
Sri Lanka is a biodiversity hotspot and one of the richest geographical locations of marine sponges in the Indian ocean. However, the most extensive taxonomical study on Sri Lankan sponge biodiversity dates back similar to 100 years and only a limited number of studies have been conducted on sponge natural products. In the current study, 35 marine sponge specimens (collected from 16 sponge habitats around Sri Lanka) were identified, microfractionated and evaluated for antibacterial and anticancer assays. In total, 30 species were characterized, of which 19 species gave extracts with antibacterial and/or cytotoxic activities. Microfractionated organic extract of Aciculites orientalis gave the most potent antibacterial activity against Staphylococcus aureus and strongest lymphoma cell toxicity was exhibited by the organic extract of Acanthella sp. Guided by the molecular ion peaks in the bioactive fractions, large-scale extraction of Stylissa massa led to the isolation of three bromopyrrole alkaloids, sceptrin, hymenin and manzacidin A/C. Of these, sceptrin exhibited broad spectrum antibacterial activity against both Escherichia coli and S. aureus (MIC of 62.5 mu M against both species). Based on natural product literature, seven promising species were identified as understudied. Their further exploration may lead to the discovery of structurally novel compounds.
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- 2024
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8. From caves to seamounts : the hidden diversity of tetractinellid sponges from the Balearic Islands, with the description of eight new species
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Díaz, Julio A., Ordines, Francesc, Massutí, Enric, Cárdenas, Paco, Díaz, Julio A., Ordines, Francesc, Massutí, Enric, and Cárdenas, Paco
- Abstract
The sponge fauna of the Western Mediterranean stands as one of the most studied in the world. Yet sampling new habitats and a poorly studied region like the Balearic Islands highlights once again our limited knowledge of this group of animals. This work focused on demosponges of the order Tetractinellida collected in several research surveys (2016–2021) on a variety of ecosystems of the Balearic Islands, including shallow caves, seamounts and trawl fishing grounds, in a broad depth range (0–725 m). Tetractinellid material from the North Atlantic and more than twenty type specimens were also examined and, for some, re-described in this work. All species were barcoded with the traditional molecular markers COI (Folmer fragment) and 28S (C1-C2 or C1-D2 fragment). A total of 36 species were identified, mostly belonging to the family Geodiidae (15 species), thereby bringing the number of tetractinellids recorded in the Balearic Islands from 15 to 39. Eight species from this study are new: Stelletta mortarium sp. nov., Penares cavernensis sp. nov., Penares isabellae sp. nov., Geodia bibilonae sp. nov., Geodia microsphaera sp. nov. and Geodia matrix sp. nov. from the Balearic Islands; Geodia phlegraeioides sp. nov. and Caminus xavierae sp. nov. from the North East Atlantic. Stelletta dichoclada and Erylus corsicus are reported for the first time since their description in Corsica in 1983. Pachastrella ovisternata is documented for the first time in the Mediterranean Sea. Finally, after comparisons of type material, we propose new synonymies: Geodia anceps as a junior synonym of Geodia geodina, Erylus cantabricus as a junior synonym of Erylus discophorus and Spongosorites maximus as a junior synonym of Characella pachastrelloides.
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- 2024
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9. DEEPEND Project: Sponge Identification Project Workshop Report. 4th - 8th March 2024.
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Horton, Tammy, Xavier, Joana, Cárdenas, Paco, Rios, Pilar, Santín, Andreu, Cristobo, Javier, Morrow, Christine, Domingos, Celso, Light, Julie, Serpell-Stevens, Amanda, Valls Domedel, Georgina, Horton, Tammy, Xavier, Joana, Cárdenas, Paco, Rios, Pilar, Santín, Andreu, Cristobo, Javier, Morrow, Christine, Domingos, Celso, Light, Julie, Serpell-Stevens, Amanda, and Valls Domedel, Georgina
- Abstract
The DEEPEND project is a collaborative effort to study the societal value of biodiversity in the deep-sea. Marine organisms are a promising resource for useful natural products such as medicines. The potential use of biodiversity - or marine genetic resources (MGR) - has yet to be thoroughly explored in the deep sea. These organisms offer the exciting potential discovery of new gene clusters that direct the formation of enzymes and small molecules. These could have useful biotechnological and pharmaceutical applications, including the discovery of novel antibiotics, coming at a time when society faces an antimicrobial resistance crisis. Marine sponges are known to be important sources of novel natural products, yet the identification of sponge taxa (many of which are new to science) requires specialist taxonomic expertise. DEEPEND was initiated in 2022 with an 8-month pilot project with an extension to the project being granted for a further 12 months, bringing the project to a close on the 31st of March 2024. As part of the extension funding, it was recognised that the team lacked expertise in sponge identification, despite this taxon being of utmost importance in biodiscovery. This workshop aims to go some way towards remedying this by providing some trusted identifications for taxa currently under study, and improving the identification of abyssal sponge taxa currently held in the Discovery Collections at NOC, which largely originate from the Porcupine Abyssal Plain, Whittard Canyon, Mid Atlantic Ridge and Haig Fras areas in the North Atlantic, and also selected specimens from the Central Pacific in the Clarion Clipperton Zone (SMARTEX Project).
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- 2024
10. A community assessment of the demersal fish and benthic invertebrates of the Rosemary Bank Seamount marine protected area (NE Atlantic)
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Eerkes-Medrano, Dafne, Drewery, Jim, Burns, Finlay, Cárdenas, Paco, Taite, Morag, M<ce:sup loc='post">c</ce:sup>Kay, David W., Stirling, David, and Neat, Francis
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- 2020
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11. From caves to seamounts: the hidden diversity of tetractinellid sponges from the Balearic Islands, with the description of eight new species
- Author
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Díaz, Julio A., primary, Ordines, Francesc, additional, Massutí, Enric, additional, and Cárdenas, Paco, additional
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- 2024
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12. North Atlantic deep-sea benthic biodiversity unveiled through sponge natural sampler DNA
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Riesgo, Ana, primary, Arias, María Belén, additional, Gallego, Ramon, additional, Díez-Vives, Cristina, additional, Neave, Erika, additional, Wang, Cai, additional, Cárdenas, Paco, additional, Steffen, Karin, additional, Taboada, Sergio, additional, Villamor, Adriana, additional, Drewery, Jim, additional, Kenchington, Ellen, additional, and Mariani, Stefano, additional
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- 2024
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13. Screening for antibacterial and cytotoxic activities of Sri Lankan marine sponges through microfractionation: Isolation of bromopyrrole alkaloids from Stylissa massa
- Author
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Kosgahakumbura, Lakmini, primary, Gamage, Jayani, additional, Robertson, Luke P., additional, Muhammad, Taj, additional, Hellman, Björn, additional, Göransson, Ulf, additional, Jayasinghe, Prabath, additional, Hettiarachchi, Chamari, additional, Cárdenas, Paco, additional, and Gunasekera, Sunithi, additional
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- 2024
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14. 35 Years of Marine Natural Product Research in Sweden: Cool Molecules and Models from Cold Waters
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Bohlin, Lars, Cárdenas, Paco, Backlund, Anders, Göransson, Ulf, Müller, Werner E G, Editor-in-chief, Schröder, Heinz C., Series editor, Ugarković, Ðurðica, Series editor, Müller, Werner E. G., editor, and Wang, Xiaohong, editor
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- 2017
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15. Sources of C30 steroid biomarkers in Neoproterozoic–Cambrian rocks and oils
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Love, Gordon D., Zumberge, J. Alex, Cárdenas, Paco, Sperling, Erik A., Rohrssen, Megan, Grosjean, Emmanuelle, Grotzinger, John P., and Summons, Roger E.
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- 2020
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16. First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens
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Cárdenas, Paco and Moore, Jon A.
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- 2019
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17. Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
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Steffen, Karin, primary, Proux-Wéra, Estelle, additional, Soler, Lucile, additional, Churcher, Allison, additional, Sundh, John, additional, and Cárdenas, Paco, additional
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- 2023
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18. Long distance dispersal and oceanographic fronts shape the connectivity of the keystone sponge Phakellia ventilabrum in the deep northeast Atlantic
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Taboada, Sergi, primary, Whiting, Connie, additional, Wang, Shuangqiang, additional, Ríos, Pilar, additional, Davies, Andrew J., additional, Mienis, Furu, additional, Kenchington, Ellen, additional, Cárdenas, Paco, additional, Cranston, Alex, additional, Koutsouveli, Vasiliki, additional, Cristobo, Javier, additional, Rapp, Hans Tore, additional, Drewery, Jim, additional, Baldó, Francisco, additional, Morrow, Christine, additional, Picton, Bernard, additional, Xavier, Joana R., additional, Arias, Maria Belén, additional, Leiva, Carlos, additional, and Riesgo, Ana, additional
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- 2023
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19. Distribution and diversity of ‘Tectomicrobia’, a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites
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Peters, Eike E., primary, Cahn, Jackson K. B., additional, Lotti, Alessandro, additional, Gavriilidou, Asimenia, additional, Steffens, Ursula A. E., additional, Loureiro, Catarina, additional, Schorn, Michelle A., additional, Cárdenas, Paco, additional, Vickneswaran, Nilani, additional, Crews, Phillip, additional, Sipkema, Detmer, additional, and Piel, Jörn, additional
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- 2023
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20. Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
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Steffen, Karin, Proux-Wéra, Estelle, Soler, Lucile, Churcher, Allison, Sundh, John, Cárdenas, Paco, Steffen, Karin, Proux-Wéra, Estelle, Soler, Lucile, Churcher, Allison, Sundh, John, and Cárdenas, Paco
- Abstract
Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes.
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- 2023
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21. Is the North Atlantic Geodia barretti (Porifera, Tetractinellida, Geodiidae) present on the Southwest Indian Ridge?
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Periasamy, Rengaiyan, Cárdenas, Paco, Kurian, Palayil John, Ingole, Baban, Samaai, Toufiek, Periasamy, Rengaiyan, Cárdenas, Paco, Kurian, Palayil John, Ingole, Baban, and Samaai, Toufiek
- Abstract
There are currently 163 species of Geodia Lamarck, 1815 described worldwide, many of which are found in deep waters, but none of which have been recorded from the Southwest Indian Ridge (SWIR). Spicule morphology and barcodes (Folmer COI, 28S (C2–D2), partial 18S) suggest that a specimen of Geodia collected on the SWIR at a depth of 2236 m is closely comparable to Geodia barretti Bowerbank, 1858. Geodia barretti is the most studied and thus well-known deep-sea Geodia species, due to its wide North Atlantic distribution and key role in boreal sponge grounds. This unexpected and markedly disjunct record would extend the distribution range of this species considerably, consequently challenging our knowledge about interoceanic deep-sea sponges.
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- 2023
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22. Distribution and diversity of 'Tectomicrobia', a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites
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Peters, Eike E., Cahn, Jackson K. B., Lotti, Alessandro, Gavriilidou, Asimenia, Steffens, Ursula A. E., Loureiro, Catarina, Schorn, Michelle A., Cárdenas, Paco, Vickneswaran, Nilani, Crews, Phillip, Sipkema, Detmer, Piel, Jörn, Peters, Eike E., Cahn, Jackson K. B., Lotti, Alessandro, Gavriilidou, Asimenia, Steffens, Ursula A. E., Loureiro, Catarina, Schorn, Michelle A., Cárdenas, Paco, Vickneswaran, Nilani, Crews, Phillip, Sipkema, Detmer, and Piel, Jörn
- Abstract
Genomic and functional analyses of bacterial sponge symbionts belonging to the uncultivated candidate genus ‘Entotheonella’ has revealed them as the prolific producers of bioactive compounds previously identified from their invertebrate hosts. These studies also suggested ‘Entotheonella’ as the first members of a new candidate phylum, ‘Tectomicrobia’. Here we analyzed the phylogenetic structure and environmental distribution of this as-yet sparsely populated phylum-like lineage. The data show that ‘Entotheonella’ and other ‘Tectomicrobia’ are not restricted to marine habitats but widely distributed among terrestrial locations. The inferred phylogenetic trees suggest several intra-phylum lineages with diverse lifestyles. Of these, the previously described ‘Entotheonella’ lineage can be more accurately divided into at least three different candidate genera with the terrestrial ‘Candidatus Prasianella’, the largely terrestrial ‘Candidatus Allonella’, the ‘Candidatus Thalassonella’ comprising sponge-associated members, and the more widely distributed ‘Candidatus Entotheonella’. Genomic characterization of ‘Thalassonella’ members from a range of sponge hosts did not suggest a role as providers of natural products, despite high genomic similarity to ‘Entotheonella’ regarding primary metabolism and implied lifestyle. In contrast, the analysis revealed a correlation between the revised ‘Entotheonella’ 16S rRNA gene phylogeny and a specific association with sponges and their natural products. This feature might serve as a discovery method to accelerate the identification of new chemically rich ‘Entotheonella’ variants, and led to the identification of the first ‘Entotheonella’ symbiont in a non-tetractinellid sponge, Psammocinia sp., indicating a wide host distribution of ‘Entotheonella’-based chemical symbiosis.
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- 2023
- Full Text
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23. Long distance dispersal and oceanographic fronts shape the connectivity of the keystone sponge Phakellia ventilabrum in the deep northeast Atlantic
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Taboada, Sergi, Whiting, Connie, Wang, Shuangqiang, Rios, Pilar, Davies, Andrew J., Mienis, Furu, Kenchington, Ellen, Cárdenas, Paco, Cranston, Alex, Koutsouveli, Vasiliki, Cristobo, Javier, Rapp, Hans Tore, Drewery, Jim, Baldo, Francisco, Morrow, Christine, Picton, Bernard, Xavier, Joana R., Arias, Maria Belen, Leiva, Carlos, Riesgo, Ana, Taboada, Sergi, Whiting, Connie, Wang, Shuangqiang, Rios, Pilar, Davies, Andrew J., Mienis, Furu, Kenchington, Ellen, Cárdenas, Paco, Cranston, Alex, Koutsouveli, Vasiliki, Cristobo, Javier, Rapp, Hans Tore, Drewery, Jim, Baldo, Francisco, Morrow, Christine, Picton, Bernard, Xavier, Joana R., Arias, Maria Belen, Leiva, Carlos, and Riesgo, Ana
- Abstract
Little is known about dispersal in deep-sea ecosystems, especially for sponges, which are abundant ecosystem engineers. Understanding patterns of gene flow in deep-sea sponges is essential, especially in areas where rising pressure from anthropogenic activities makes difficult to combine management and conservation. Here, we combined population genomics and oceanographic modelling to understand how Northeast Atlantic populations (Cantabrian Sea to Norway) of the deep-sea sponge Phakellia ventilabrum are connected. The analysis comprised ddRADseq derived SNP datasets of 166 individuals collected from 57 sampling stations from 17 different areas, including two Marine Protected Areas, one Special Area of Conservation and other areas with different levels of protection. The 4,017 neutral SNPs used indicated high connectivity and panmixis amongst the majority of areas (Ireland to Norway), spanning ca. 2,500-km at depths of 99-900 m. This was likely due to the presence of strong ocean currents allowing long-distance larval transport, as supported by our migration analysis and by 3D particle tracking modelling. On the contrary, the Cantabrian Sea and Roscoff (France) samples, the southernmost areas in our study, appeared disconnected from the remaining areas, probably due to prevailing current circulation patterns and topographic features, which might be acting as barriers for gene flow. Despite this major genetic break, our results suggest that all protected areas studied are well-connected with each other. Interestingly, analysis of SNPs under selection replicated results obtained for neutral SNPs. The relatively low genetic diversity observed along the study area, though, highlights the potential fragility of this species to changing climates, which might compromise resilience to future threats.
- Published
- 2023
- Full Text
- View/download PDF
24. Distribution and diversity of ‘Tectomicrobia’, a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites
- Author
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Peters, Eike, Cahn, Jackson, Lotti, Alessandro, Gavriilidou, Asimenia, Steffens, Ursula, Loureiro, Catarina, Schorn, Michelle, Cárdenas, Paco, Vickneswaran, Nilani, Crews, Phillip, Sipkema, Detmer, Piel, Jörn, Peters, Eike, Cahn, Jackson, Lotti, Alessandro, Gavriilidou, Asimenia, Steffens, Ursula, Loureiro, Catarina, Schorn, Michelle, Cárdenas, Paco, Vickneswaran, Nilani, Crews, Phillip, Sipkema, Detmer, and Piel, Jörn
- Abstract
Genomic and functional analyses of bacterial sponge symbionts belonging to the uncultivated candidate genus ‘Entotheonella’ has revealed them as the prolific producers of bioactive compounds previously identified from their invertebrate hosts. These studies also suggested ‘Entotheonella’ as the first members of a new candidate phylum, ‘Tectomicrobia’. Here we analyzed the phylogenetic structure and environmental distribution of this as-yet sparsely populated phylum-like lineage. The data show that ‘Entotheonella’ and other ‘Tectomicrobia’ are not restricted to marine habitats but widely distributed among terrestrial locations. The inferred phylogenetic trees suggest several intra-phylum lineages with diverse lifestyles. Of these, the previously described ‘Entotheonella’ lineage can be more accurately divided into at least three different candidate genera with the terrestrial ‘Candidatus Prasianella’, the largely terrestrial ‘Candidatus Allonella’, the ‘Candidatus Thalassonella’ comprising sponge-associated members, and the more widely distributed ‘Candidatus Entotheonella’. Genomic characterization of ‘Thalassonella’ members from a range of sponge hosts did not suggest a role as providers of natural products, despite high genomic similarity to ‘Entotheonella’ regarding primary metabolism and implied lifestyle. In contrast, the analysis revealed a correlation between the revised ‘Entotheonella’ 16S rRNA gene phylogeny and a specific association with sponges and their natural products. This feature might serve as a discovery method to accelerate the identification of new chemically rich ‘Entotheonella’ variants, and led to the identification of the first ‘Entotheonella’ symbiont in a non-tetractinellid sponge, Psammocinia sp., indicating a wide host distribution of ‘Entotheonella’-based chemical symbiosis.
- Published
- 2023
25. Long distance dispersal and oceanographic fronts shape the connectivity of the keystone sponge Phakellia ventilabrum in the deep northeast Atlantic
- Author
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European Commission, Ministerio de Ciencia e Innovación (España), Fundação para a Ciência e a Tecnologia (Portugal), Ministerio de Agricultura, Alimentación y Medio Ambiente (España), Taboada, Sergi, Whiting, Connie, Wang, Shuangqiang, Ríos, Pilar, Davies, Andrew J., Mienis, Furu, Kenchington, Ellen, Cárdenas, Paco, Cranston, Alex, Koutsouveli, Vasiliki, Cristobo, Javier, Rapp, Hans Tore, Drewery, Jim, Baldó, Francisco, Morrow, Christine, Piton, Bernard, Xavier, Joana R., Arias, María Belén, Leiva, Carlos, Riesgo Gil, Ana, European Commission, Ministerio de Ciencia e Innovación (España), Fundação para a Ciência e a Tecnologia (Portugal), Ministerio de Agricultura, Alimentación y Medio Ambiente (España), Taboada, Sergi, Whiting, Connie, Wang, Shuangqiang, Ríos, Pilar, Davies, Andrew J., Mienis, Furu, Kenchington, Ellen, Cárdenas, Paco, Cranston, Alex, Koutsouveli, Vasiliki, Cristobo, Javier, Rapp, Hans Tore, Drewery, Jim, Baldó, Francisco, Morrow, Christine, Piton, Bernard, Xavier, Joana R., Arias, María Belén, Leiva, Carlos, and Riesgo Gil, Ana
- Abstract
Little is known about dispersal in deep-sea ecosystems, especially for sponges, which are abundant ecosystem engineers. Understanding patterns of gene flow in deep-sea sponges is essential, especially in areas where rising pressure from anthropogenic activities makes difficult to combine management and conservation. Here, we combined population genomics and oceanographic modelling to understand how Northeast Atlantic populations (Cantabrian Sea to Norway) of the deep-sea sponge Phakellia ventilabrum are connected. The analysis comprised ddRADseq derived SNP datasets of 166 individuals collected from 57 sampling stations from 17 different areas, including two Marine Protected Areas, one Special Area of Conservation and other areas with different levels of protection. The 4,017 neutral SNPs used indicated high connectivity and panmixis amongst the majority of areas (Ireland to Norway), spanning ca. 2,500-km at depths of 99–900 m. This was likely due to the presence of strong ocean currents allowing long-distance larval transport, as supported by our migration analysis and by 3D particle tracking modelling. On the contrary, the Cantabrian Sea and Roscoff (France) samples, the southernmost areas in our study, appeared disconnected from the remaining areas, probably due to prevailing current circulation patterns and topographic features, which might be acting as barriers for gene flow. Despite this major genetic break, our results suggest that all protected areas studied are well-connected with each other. Interestingly, analysis of SNPs under selection replicated results obtained for neutral SNPs. The relatively low genetic diversity observed along the study area, though, highlights the potential fragility of this species to changing climates, which might compromise resilience to future threats.
- Published
- 2023
26. No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera
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Gazave, Eve, Lapébie, Pascal, Ereskovsky, Alexander V., Vacelet, Jean, Renard, Emmanuelle, Cárdenas, Paco, Borchiellini, Carole, Martens, Koen, editor, Maldonado, Manuel, editor, Turon, Xavier, editor, Becerro, Mikel, editor, and Jesús Uriz, Maria, editor
- Published
- 2012
- Full Text
- View/download PDF
27. 35 Years of Marine Natural Product Research in Sweden: Cool Molecules and Models from Cold Waters
- Author
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Bohlin, Lars, primary, Cárdenas, Paco, additional, Backlund, Anders, additional, and Göransson, Ulf, additional
- Published
- 2017
- Full Text
- View/download PDF
28. Who Produces Ianthelline? The Arctic Sponge Stryphnus fortis or its Sponge Epibiont Hexadella dedritifera: a Probable Case of Sponge-Sponge Contamination
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Cárdenas, Paco
- Published
- 2016
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29. Avilés Canyon System: Increasing the benthic biodiversity knowledge
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Ríos, Pilar, primary, Altuna, Álvaro, additional, Frutos, Inmaculada, additional, Manjón-Cabeza, Eugenia, additional, García-Guillén, Laura, additional, Macías-Ramírez, Aurora, additional, Ibarrola, Teodoro P., additional, Gofas, Serge, additional, Taboada, Sergi, additional, Souto, Javier, additional, Álvarez, Fernando, additional, Saiz-Salinas, Jose I., additional, Cárdenas, Paco, additional, Rodríguez-Cabello, Cristina, additional, Lourido, Antía, additional, Boza, Cristina, additional, Rodríguez-Basalo, Augusto, additional, Prado, Elena, additional, Abad-Uribarren, Alberto, additional, Parra, Santiago, additional, Sánchez, Francisco, additional, and Cristobo, Javier, additional
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- 2022
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30. Disrupted spiculogenesis in deep-water Geodiidae (Porifera, Demospongiae) growing in shallow waters
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Cárdenas, Paco and Rapp, Hans Tore
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- 2013
31. Aviles Canyon System : Increasing the benthic biodiversity knowledge
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Rios, Pilar, Altuna, Alvaro, Frutos, Inmaculada, Manjon-Cabeza, Eugenia, Garcia-Guillen, Laura, Macias-Ramirez, Aurora, Ibarrola, Teodoro P., Gofas, Serge, Taboada, Sergi, Souto, Javier, Alvarez, Fernando, Saiz-Salinas, Jose I., Cárdenas, Paco, Rodriguez-Cabello, Cristina, Lourido, Antia, Boza, Cristina, Rodriguez-Basalo, Augusto, Prado, Elena, Abad-Uribarren, Alberto, Parra, Santiago, Sanchez, Francisco, Cristobo, Javier, Rios, Pilar, Altuna, Alvaro, Frutos, Inmaculada, Manjon-Cabeza, Eugenia, Garcia-Guillen, Laura, Macias-Ramirez, Aurora, Ibarrola, Teodoro P., Gofas, Serge, Taboada, Sergi, Souto, Javier, Alvarez, Fernando, Saiz-Salinas, Jose I., Cárdenas, Paco, Rodriguez-Cabello, Cristina, Lourido, Antia, Boza, Cristina, Rodriguez-Basalo, Augusto, Prado, Elena, Abad-Uribarren, Alberto, Parra, Santiago, Sanchez, Francisco, and Cristobo, Javier
- Abstract
Macro and megafauna were studied in the Avile acute accent s Canyon System (ACS), southern Bay of Biscay (Cantabrian Sea), during several oceanographic cruises carried out from 2009 to 2017. The biodiversity of ACS is summarized and its description is herein updated after sampling surveys of several programmes (ECOMARG, INDEMARES, SponGES, INTEMARES) conducted by the Spanish Institute of Oceanography (IEO).This study has updated previous knowledge in the canyon area from past national and international projects, their reports and publications as well as data collected in the context of regional projects designed to gain new insight into the diversity of marine invertebrates and fishes from the ACS. Samples were taken using a range of sampling gears (Rock dredge, Beam trawl, Trawl gear GOC-73, Suprabenthic sledge, Box corer and Remoted operated vehicle), from 55 to 2291 m in depth. A total of 1015 species were identified at the ACS: 98 Porifera, 153 Cnidaria, 14 Brachiopoda, 22 Bryozoa, 97 Mollusca, 151 Annelida, 315 Arthropoda, 74 Echinodermata and 91 Chordata. New records for the Bay of Biscay fauna include 13 Porifera species, 17 Cnidaria, 7 Mollusca, Arthopoda, 3 Echinodermata and 4 Chordata. Also the bathymetric range of some species has been extended. As a result of the research projects carried out in the area in the last fifteen years, important information is now available which suggests that the ACS houses a large number of species with a high ecological value, that represents a biodiversity hotspot in terms of the presence of sponge aggregations and coral reefs in certain regions, and that it sustains important fisheries due to the abundance of comercial species. Given the relevance of the species and habitats occurring in the ACS, there is a need to implement a conservation and management plan of the area in order to maintain habitats in good state of preservation.
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- 2022
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32. Good Practices in Sponge Natural Product Studies : Revising Vouchers with Isomalabaricane Triterpenes
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Cárdenas, Paco, Gamage, Jayani, Hettiarachchi, Chamari M., Gunasekera, Sunithi, Cárdenas, Paco, Gamage, Jayani, Hettiarachchi, Chamari M., and Gunasekera, Sunithi
- Abstract
Species misidentification in the field of natural products is an acknowledged problem. These errors are especially widespread in sponge studies, albeit rarely assessed and documented. As a case study, we aim to revisit reports of isomalabaricane triterpenes, isolated from four demosponge genera: Jaspis, Geodia, Stelletta and Rhabdastrella. From a total of 44 articles (1981-2022), 27 unique vouchers were listed, 21 of which were accessed and re-examined here: 11 (52.4%) of these were misidentified. Overall, 65.9% of the studies published an incorrect species name: previously identified Jaspis and Stelletta species were all in fact Rhabdastrella globostellata. We conclude that isomalabaricane triterpenes were isolated from only two Rhabdastrella species and possibly one Geodia species. In addition to shedding a new light on the distribution of isomalabaricane triterpenes, this study is an opportunity to highlight the crucial importance of vouchers in natural product studies. Doing so, we discuss the impact of species misidentification and poor accessibility of vouchers in the field of sponge natural products. We advocate for stricter voucher guidelines in natural product journals and propose a common protocol of good practice, in the hope of reducing misidentifications in sponge studies, ensure reproducibility of studies, and facilitate follow-up work on the original material.
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- 2022
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33. Oogenesis and lipid metabolism in the deep-sea sponge Phakellia ventilabrum (Linnaeus, 1767)
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Uppsala University, European Commission, Ministerio de Ciencia e Innovación (España), Koutsouveli, Vasiliki, Balgoma, David, Checa, Antonio, Hedeland, Mikael, Riesgo Gil, Ana, Cárdenas, Paco, Uppsala University, European Commission, Ministerio de Ciencia e Innovación (España), Koutsouveli, Vasiliki, Balgoma, David, Checa, Antonio, Hedeland, Mikael, Riesgo Gil, Ana, and Cárdenas, Paco
- Abstract
Sponges contain an astounding diversity of lipids that serve in several biological functions, including yolk formation in their oocytes and embryos. The study of lipid metabolism during reproduction can provide information on food‑web dynamics and energetic needs of the populations in their habitats, however, there are no studies focusing on the lipid metabolism of sponges during their seasonal reproduction. In this study, we used histology, lipidome profiling (UHPLC‑MS), and transcriptomic analysis (RNA‑seq) on the deep‑sea sponge Phakellia ventilabrum (Demospongiae, Bubarida), a key species of North‑Atlantic sponge grounds, with the goal to (i) assess the reproductive strategy and seasonality of this species, (ii) examine the relative changes in the lipidome signal and the gene expression patterns of the enzymes participating in lipid metabolism during oogenesis. Phakellia ventilabrum is an oviparous and most certainly gonochoristic species, reproducing in May and September in the different studied areas. Half of the specimens were reproducing, generating two to five oocytes per mm 2 . Oocytes accumulated lipid droplets and as oogenesis progressed, the signal of most of the unsaturated and monounsaturated triacylglycerides increased, as well as of a few other phospholipids. In parallel, we detected upregulation of genes in female tissues related to triacylglyceride biosynthesis and others related to fatty acid beta‑oxidation. Triacylglycerides are likely the main type of lipid forming the yolk in P. ventilabrum since this lipid category has the most marked changes. In parallel, other lipid categories were engaged in fatty acid beta‑oxidation to cover the energy requirements of female individuals during oogenesis. In this study, the reproductive activity of the sponge P. ventilabrum was studied for the first time uncovering their seasonality and revealing 759 lipids, including 155 triacylglycerides. Our study has ecological and evolutionary implications providing e
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- 2022
34. Connectivity of sponge grounds in the deep sea: genetic diversity, gene flow and oceanographic pathways in the fan-shaped sponge Phakellia ventilabrum in the northeast Atlantic
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Taboada, Sergi, primary, Whiting, Connie, additional, Wang, Shuangqiang, additional, Ríos, Pilar, additional, Davies, Andrew, additional, Mienis, Furu, additional, Kenchington, Ellen, additional, Cárdenas, Paco, additional, Cranston, Alex, additional, Koutsouveli, Vasiliki, additional, Cristobo, Javier, additional, Rapp, Hans-Tore, additional, Drewery, Jim, additional, Baldó, Francisco, additional, Morrow, Christine, additional, Picton, Bernard, additional, Xavier, Joana, additional, Arias, María Belén, additional, and Riesgo, Ana, additional
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- 2022
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35. Good Practices in Sponge Natural Product Studies: Revising Vouchers with Isomalabaricane Triterpenes
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Cárdenas, Paco, primary, Gamage, Jayani, additional, Hettiarachchi, Chamari M., additional, and Gunasekera, Sunithi, additional
- Published
- 2022
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36. Barrettides: A Peptide Family Specifically Produced by the Deep-Sea Sponge Geodia barretti
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Steffen, Karin, primary, Laborde, Quentin, additional, Gunasekera, Sunithi, additional, Payne, Colton D., additional, Rosengren, K. Johan, additional, Riesgo, Ana, additional, Göransson, Ulf, additional, and Cárdenas, Paco, additional
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- 2021
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37. The effects of sampling and storage conditions on the metabolite profile of the marine sponge Geodia barretti
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Erngren, Ida, Smit, Eva, Pettersson, Curt, Cárdenas, Paco, Hedeland, Mikael, Erngren, Ida, Smit, Eva, Pettersson, Curt, Cárdenas, Paco, and Hedeland, Mikael
- Abstract
Geodia barretti is a marine sponge common in the north Atlantic and waters outside of Norway and Sweden. The sampling and subsequent treatment as well as storage of sponges for metabolomics analyses can be performed in different ways, the most commonly used being freezing (directly upon collection or later) or by storage in solvent, commonly ethanol, followed by freeze-drying. In this study we therefore investigated different sampling protocols and their effects on the detected metabolite profiles in LC-MS. Sponges (G. barretti) were collected outside the Swedish west coast and pieces from three sponge specimens were either flash frozen in liquid nitrogen, frozen later after the collection cruise, stored in ethanol or stored in methanol. The storage solvents as well as the actual sponge pieces were analyzed, all samples were analyzed with hydrophilic interaction liquid chromatography (HILIC) as well as reversed phase liquid chromatography with high resolution mass spectrometry (HRMS) in positive and negative ionization mode. The data were evaluated using multivariate data analysis. The highest metabolite intensities were found in the frozen samples (flash frozen and frozen after sampling cruise) as well as in the storage solvents (methanol and ethanol). Metabolites extracted from the sponge pieces that had been stored in solvent were found in very low intensity, since the majority of metabolites were extracted to the solvents to a high degree. The exception being larger peptides and some lipids. The lowest variation between replicates were found in the flash frozen samples. In conclusion, the preferred method for sampling of sponges for metabolomics was found to be immediate freezing in liquid nitrogen. However, freezing the sponge samples after some time proved to be a reliable method as well, albeit with higher variation between the replicates. Thus, the study highlights the importance of saving ethanol extracts after preservation of specimens; these valuable extr
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- 2021
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38. A community perspective on the concept of marine holobionts: current status, challenges, and future directions
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Dittami, Simon M., Arboleda, Enrique, Auguet, Jean-Christophe, Bigalke, Arite, Briand, Enora, Cárdenas, Paco, Cardini, Ulisse, Decelle, Johan, Engelen, Aschwin H., Eveillard, Damien, Gachon, Claire M.M., Griffiths, Sarah M., Harder, Tilmann, Kayal, Ehsan, Kazamia, Elena, Lallier, François H., Medina, Mónica, Marzinelli, Ezequiel M., Morganti, Teresa Maria, Núñez Pons, Laura, Prado, Soizic, Pintado, José, Saha, Mahasweta, Selosse, Marc-André, Skillings, Derek, Stock, Willem, Sunagawa, Shinichi, Toulza, Eve, Vorobev, Alexey, Leblanc, Catherine, Not, Fabrice, Dittami, Simon M., Arboleda, Enrique, Auguet, Jean-Christophe, Bigalke, Arite, Briand, Enora, Cárdenas, Paco, Cardini, Ulisse, Decelle, Johan, Engelen, Aschwin H., Eveillard, Damien, Gachon, Claire M.M., Griffiths, Sarah M., Harder, Tilmann, Kayal, Ehsan, Kazamia, Elena, Lallier, François H., Medina, Mónica, Marzinelli, Ezequiel M., Morganti, Teresa Maria, Núñez Pons, Laura, Prado, Soizic, Pintado, José, Saha, Mahasweta, Selosse, Marc-André, Skillings, Derek, Stock, Willem, Sunagawa, Shinichi, Toulza, Eve, Vorobev, Alexey, Leblanc, Catherine, and Not, Fabrice
- Abstract
Host-microbe interactions play crucial roles in marine ecosystems. However, we still have very little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them, and their ecological consequences. The holobiont concept is a renewed paradigm in biology that can help to describe and understand these complex systems. It posits that a host and its associated microbiota with which it interacts, form a holobiont, and have to be studied together as a coherent biological and functional unit to understand its biology, ecology, and evolution. Here we discuss critical concepts and opportunities in marine holobiont research and identify key challenges in the field. We highlight the potential economic, sociological, and environmental impacts of the holobiont concept in marine biological, evolutionary, and environmental sciences. Given the connectivity and the unexplored biodiversity specific to marine ecosystems, a deeper understanding of such complex systems requires further technological and conceptual advances, e.g., the development of controlled experimental model systems for holobionts from all major lineages and the modeling of (info)chemical-mediated interactions between organisms. Here we propose that one significant challenge is to bridge cross-disciplinary research on tractable model systems in order to address key ecological and evolutionary questions. This first step is crucial to decipher the main drivers of the dynamics and evolution of holobionts and to account for the holobiont concept in applied areas, such as the conservation, management, and exploitation of marine ecosystems and resources, where practical solutions to predict and mitigate the impact of human activities are more important than ever.
- Published
- 2021
39. Systematics of 'lithistid' tetractinellid demosponges from the Tropical Western Atlantic-implications for phylodiversity and bathymetric distribution
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Schuster, Astrid, Pomponi, Shirley A., Pisera, Andrzej, Cárdenas, Paco, Kelly, Michelle, Wörheide, Gert, Erpenbeck, Dirk, Schuster, Astrid, Pomponi, Shirley A., Pisera, Andrzej, Cárdenas, Paco, Kelly, Michelle, Wörheide, Gert, and Erpenbeck, Dirk
- Abstract
Background: Among all present demosponges, lithistids represent a polyphyletic group with exceptionally well-preserved fossils dating back to the Cambrian. Knowledge of their recent diversity, particularly in the Tropical Western Atlantic Ocean (TWA) where they are common in deep waters, is scarce making any comparison between present and past major 'lithistid' faunas difficult. In addition, the lack of sufficient molecular and morphological data hamper any predictions on phylogenetic relationships or phylodiversity from this region. The Harbor Branch Oceanographic Institute (HBOI, Fort Pierce, Florida) holds the largest collection of TWA lithistid sponges worldwide, however, the majority remain to be taxonomically identified and revised. Principal Findings: In this study we provide sequences of 249 lithistid demosponges using two independent molecular markers (28S rDNA (C1-D2) and cox1 mtDNA). In addition, a morphological documentation of 70 lithistid specimens is provided in the database of the Sponge Barcoding Project (SBP). This integrated dataset represents the largest and most comprehensive of the TWA lithistids to date. The phylogenetic diversity of 'lithistid' demosponges in the Bahamas and Jamaica are high in comparison to other TWA regions; Theonellidae and Corallistidae dominate the fauna, while Neopeltidae and Macandrewiidae are rare. A proposed tetractinellid suborder, one undescribed genus and several undescribed species are recognized and the Pacific 'lithistid' genera, Herengeria and Awhiowhio, are reported from the TWA for the first time. The higher-taxa relationships of desma-bearing tetractinellids are discussed and topics for revision suggested. Conclusion: This first integrative approach of TWA 'lithistid' demosponges contributes to a better understanding of their phylogenetic affinities, diversity and bathymetric distribution patterns within the TWA. As in the Pacific, the TWA 'lithistid' demosponges dominate deep-water habitats. Deeper taxonom
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- 2021
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40. Water masses constrain the distribution of deep-sea sponges in the North Atlantic Ocean and Nordic Seas
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Roberts, E. M., Bowers, D. G., Meyer, H. K., Samuelsen, A., Rapp, H. T., Cárdenas, Paco, Roberts, E. M., Bowers, D. G., Meyer, H. K., Samuelsen, A., Rapp, H. T., and Cárdenas, Paco
- Abstract
Water masses are bodies of water with distinctive physical and biogeochemical properties. They impart vertical structure to the deep ocean, participate in circulation, and can be traced over great distances, potentially influencing the distributions of deep-sea fauna. The classic potential temperature-salinity (theta-s) diagram was used to investigate deep-sea sponge (demosponge genus Geodia) association with water masses over the North Atlantic Ocean and Nordic Seas. A novel analysis was conducted, based on sampling the curvature of climatological mean theta-s curves at sponge locations. Sponges were particularly associated with turning points in the theta-s curves, indicative of intermediate and deep water masses. Arctic geodiid species (G. hentscheli and G. parva) were associated with Arctic intermediate and deep waters in the Nordic Seas, and with dense overflows into the northern North Atlantic. Boreal species (G. atlantica, G. barretti, G. macandrewii, and G. phlegraei) were associated with upper and intermediate water masses in the Northeast Atlantic and with upper, Atlantic-derived waters in the Nordic Seas. Taken together with distributional patterns, a link with thermohaline currents was also inferred. We conclude that water masses and major current pathways structure the distribution of a key deep-sea benthic faunal group on an ocean basin scale. This is most likely because of a combination of the physical constraints they place on the dispersal of early life-history stages, ecophysiological adaptation (evolved tolerances) to specific water masses, and the benefits to filter-feeders of certain phenomena linked to water column structure (e.g. nepheloid layers, internal waves/ tides, density-driven currents).
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- 2021
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41. Mitochondrial evolution in the Demospongiae (Porifera) : Phylogeny, divergence time, and genome biology
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Plese, Bruna, Kenny, Nathan James, Rossi, Maria Eleonora, Cárdenas, Paco, Schuster, Astrid, Taboada, Sergi, Koutsouveli, Vasiliki, Riesgo, Ana, Plese, Bruna, Kenny, Nathan James, Rossi, Maria Eleonora, Cárdenas, Paco, Schuster, Astrid, Taboada, Sergi, Koutsouveli, Vasiliki, and Riesgo, Ana
- Abstract
The sponge class Demospongiae is the most speciose and morphologically diverse in the phylum Porifera, and the species within it are vital components of a range of ecosystems worldwide. Despite their ubiquity, a number of recalcitrant problems still remain to be solved regarding their phylogenetic inter-relationships, the timing of their appearance, and their mitochondrial biology, the latter of which is only beginning to be investigated. Here we generated 14 new demosponge mitochondrial genomes which, alongside previously published mitochondrial resources, were used to address these issues. In addition to phylogenomic analysis, we have used syntenic data and analysis of coding regions to forge a framework for understanding the inter-relationships between Demospongiae sub-classes and orders. We have also leveraged our new resources to study the mitochondrial biology of these clades in terms of codon usage, optimisation and gene expression, to understand how these vital cellular components may have contributed to the success of the Porifera. Our results strongly support a sister relationship between Keratosa and (Verongimorpha + Heteroscleromorpha), contradicting previous studies using nuclear markers. Our study includes one species of Clionaida, and show for the first time support for a grouping of Suberitida+(Clionaida+(Tethyida + Poecilosclerida). The findings of our phylogenetic analyses are supported by in-depth examination of structural and coding-level evidence from our mitochondrial data. A time-calibrated phylogeny estimated the origin of Demospongiae in the Cambrian (similar to 529 Mya), and suggests that most demosponge order crown-groups emerged in the Mesozoic. This work therefore provides a robust basis for considering demosponge phylogenetic relationships, as well as essential mitochondrial data for understanding the biological basis for their success and diversity.
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- 2021
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42. Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology
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European Commission, Ministerio de Ciencia e Innovación (España), Fundação para a Ciência e a Tecnologia (Portugal), Plese, Bruna, Kenny, Nathan, Rossi, Maria Eleonora, Cárdenas, Paco, Schuster, Astrid, Taboada, S., Koutsouveli, Vasiliki, Riesgo Gil, Ana, European Commission, Ministerio de Ciencia e Innovación (España), Fundação para a Ciência e a Tecnologia (Portugal), Plese, Bruna, Kenny, Nathan, Rossi, Maria Eleonora, Cárdenas, Paco, Schuster, Astrid, Taboada, S., Koutsouveli, Vasiliki, and Riesgo Gil, Ana
- Abstract
The sponge class Demospongiae is the most speciose and morphologically diverse in the phylum Porifera, and the species within it are vital components of a range of ecosystems worldwide. Despite their ubiquity, a number of recalcitrant problems still remain to be solved regarding their phylogenetic inter-relationships, the timing of their appearance, and their mitochondrial biology, the latter of which is only beginning to be investigated., Here we generated 14 new demosponge mitochondrial genomes which, alongside previously published mitochondrial resources, were used to address these issues. In addition to phylogenomic analysis, we have used syntenic data and analysis of coding regions to forge a framework for understanding the inter–relationships between Demospongiae sub-classes and orders. We have also leveraged our new resources to study the mitochondrial biology of these clades in terms of codon usage, optimisation and gene expression, to understand how these vital cellular components may have contributed to the success of the Porifera., Our results strongly support a sister relationship between Keratosa and (Verongimorpha + Heteroscleromorpha), contradicting previous studies using nuclear markers. Our study includes one species of Clionaida, and show for the first time support for a grouping of Suberitida+(Clionaida+(Tethyida + Poecilosclerida). The findings of our phylogenetic analyses are supported by in-depth examination of structural and coding-level evidence from our mitochondrial data. A time-calibrated phylogeny estimated the origin of Demospongiae in the Cambrian (~529 Mya), and suggests that most demosponge order crown-groups emerged in the Mesozoic. This work therefore provides a robust basis for considering demosponge phylogenetic relationships, as well as essential mitochondrial data for understanding the biological basis for their success and diversity.
- Published
- 2021
43. Oogenesis and lipid metabolism in the deep-sea sponge Phakellia ventilabrum: an histological, lipidomic and transcriptomic approach
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Koutsouveli, Vasiliki, primary, Balgoma, David, additional, Checa, Antonia, additional, Hedeland, Mikael, additional, Riesgo, Ana, additional, and Cárdenas, Paco, additional
- Published
- 2021
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44. The Effects of Sampling and Storage Conditions on the Metabolite Profile of the Marine Sponge Geodia barretti
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Erngren, Ida, primary, Smit, Eva, additional, Pettersson, Curt, additional, Cárdenas, Paco, additional, and Hedeland, Mikael, additional
- Published
- 2021
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45. Systematics of ‘lithistid’ tetractinellid demosponges from the Tropical Western Atlantic—implications for phylodiversity and bathymetric distribution
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Schuster, Astrid, primary, Pomponi, Shirley A., additional, Pisera, Andrzej, additional, Cárdenas, Paco, additional, Kelly, Michelle, additional, Wörheide, Gert, additional, and Erpenbeck, Dirk, additional
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- 2021
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46. A Pictorial Guide to the Epibenthic Megafauna of Orphan Knoll (northwest Atlantic) Identified from In Situ Benthic Video Footage
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Wudrick, Alannah, Beazley, Lindsay, Culwick, Timothy, Goodwin, Claire, Cárdenas, Paco, Xavier, Joana, and Kenchington, Ellen
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Horizon 2020 ,Epibentic megafauna ,SponGES ,European Union ,Grant Agreement No 678760 ,North West Atlantic ,Photoguide ,Deep-sea Sponge Grounds Ecosystems of the North Atlantic: An integrated approach towards their preservation and sustainable exploitation - Abstract
In 2010, Fisheries and Oceans Canada led a multidisciplinary oceanographic research mission onboard the Canadian Coast Guard Ship Hudson to the Northwest Atlantic Fisheries Organization Regulatory Area to collect benthic imagery and geological data in support of the identification of vulnerable marine ecosystems. Using the remotely operated vehicle ROPOS, six benthic video transects were collected on Orphan Knoll, a submerged circular continental fragment located 550 km northeast of St. John’s, Newfoundland. High-resolution video footage, digital still images, and specimen samples were collected between 1655 and 3004 m depth across the flanks and plateau of the knoll and Orphan Seamount. In 2007, the Northwest Atlantic Fisheries Organization implemented a ~15,800 km2 closure over Orphan Knoll to restrict the use of bottom- tending fishing gear in accordance with United Nations General Assembly Resolution 61/105. However, at the time, its benthic communities and the presence of vulnerable marine ecosystems had not been fully assessed. Here we present a pictorial guide to the epibenthic megafauna enumerated and taxonomically identified from five ROPOS transects collected on Orphan Knoll and Orphan Seamount. The purpose of this report is to provide a visual representation and taxonomic nomenclature scheme of the epibenthic megafauna of Orphan Knoll for use in future monitoring of the benthic communities of this unique topographic feature. RÉSUMÉ. En 2010, Pêches et Océans Canada a mené une mission de recherche océanographique multidisciplinaire à bord du navire de la Garde côtière canadienne Hudson dans la zone de réglementation de l’Organisation des pêches de l’Atlantique Nord-Ouest, afin de recueillir des données géologiques et d’imagerie benthique pour appuyer l’identification des écosystèmes marins vulnérables. À l’aide d’un véhicule télécommandé ROPOS, des images vidéo de six transects benthiques ont été recueillies sur le dôme Orphan, un fragment continental circulaire submergé situé à 550 km au nord-est de St. John’s (Terre Neuve). Des séquences vidéo à haute résolution, des images fixes numériques et des échantillons ont été recueillis à des profondeurs de 1 655 m à 3 004 m sur les flancs et le plateau du dôme et du mont sous-marin Orphan. En 2007, l’Organisation des pêches de l’Atlantique Nord-Ouest a mis en place une fermeture d’approximativement 15 800 km2 sur le dôme Orphan afin de restreindre l’utilisation des engins de pêche de fond conformément à la résolution 61/105 de l’Assemblée générale des Nations Unies. Toutefois, à cette époque, ses communautés benthiques ainsi que la présence d’écosystèmes marins vulnérables n’avaient pas encore été pleinement évaluées. Nous présentons ici un guide illustré de la mégafaune épibenthique recensée et identifiée sur le plan taxonomique d’après les données de cinq transects obtenues au moyen du véhicule ROPOS sur le dôme et le mont sous-marin Orphan. Le présent rapport vise à fournir une représentation visuelle et un schéma de la nomenclature taxonomique de la mégafaune épibenthique du dôme Orphan, qui pourront être utilisés ultérieurement pour le suivi des communautés benthiques qui peuplent cette entité topographique unique.
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- 2020
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47. Genetic diversity, gene flow and hybridization in fan-shaped demosponges (Phakellia spp.) in the northeast Atlantic deep sea
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Taboada, Sergi, Ríos, Pilar, Mitchell, Alex, Wang, Shuangqiang, Davies, Andrew J.J., Kenchington, Ellen, Cranston, Alex, Busch, Kathrin, Tonzo, Vanina, Cárdenas, Paco, Leiva, Carlos, Vasiliki, Koutsouveli, Cristobo, Javier, Hentschel, Ute, Hans, Torerapp, Drewery, Jim, Arias, Maria Belén, and Riesgo, Ana
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Centro Oceanográfico de Santander - Published
- 2020
48. Surface Microornamentation of Demosponge Sterraster Spicules, Phylogenetic and Paleontological Implications
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Cárdenas, Paco and Cárdenas, Paco
- Abstract
Siliceous spicules in demosponges exist in a variety of shapes, some of which look like minute spheres of glass. They are called “sterrasters” when they belong to the Geodiidae family (Tetractinellida order) and “selenasters” when they belong to the Placospongiidae family (Clionaida order). Today, the Geodiidae represent a highly diverse sponge family with more than 340 species, occurring in shallow to deep waters worldwide, except for the Antarctic. The molecular phylogeny of Geodiidae is currently difficult to interpret because we are lacking morphological characters to support most of its clades. To fill this knowledge gap, the surface microornamentations of sterrasters were compared in different genera. Observations with scanning electron microscopy revealed four types of surfaces, which remarkably matched some of the Geodiidae genera: type I characteristic of Geodia, type II characteristic of Pachymatisma, Caminus, and some Erylus; type III characteristic of other Erylus; type IV characteristic of Caminella. Two subtypes were identified in Geodia species: warty vs. smooth rosettes. These different microornamentations were mapped on new Geodiidae COI (Folmer fragment) and 28S (C1–D2) phylogenetic trees. The monophyly of the Geodiidae was once again challenged, thereby suggesting that sterrasters have evolved independently at least three times: in the Geodiinae, in the Erylinae and in Caminella. Surface microornamentations were used to review the fossil record of sterrasters and selenasters through the paleontology literature and examination of fossils. It was concluded that “rhaxes” in the literature may represent mixes of sterrasters and selenasters: while Rhaxella spicules may belong to the Placospongiidae, Rhaxelloides spicules belong to the Geodiidae. The putative Geodiidae fossil genera, Geoditesia, and Geodiopsis, are reallocated to Tetractinellida incertae sedis. Isolated Miocene-Pliocene fossil sterrasters Hataina (Huang, 1967), Silicosphaera (Hughes, 19
- Published
- 2020
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49. Poorly known sponges in the Mediterranean with the detection of some taxonomic inconsistencies
- Author
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Díaz, Julio A., Ramírez-Amaro, Sergio, Ordines, Francesc, Cárdenas, Paco, Ferriol, Pere, Terrasa, Bàrbara, Massutí, Enric, Díaz, Julio A., Ramírez-Amaro, Sergio, Ordines, Francesc, Cárdenas, Paco, Ferriol, Pere, Terrasa, Bàrbara, and Massutí, Enric
- Abstract
The poorly known sponge species Axinella vellerea (Topsent, 1904), Acarnus levii (Vacelet, 1960) and Haliclona poecillastroides (Vacelet, 1969) are reported from bottom-trawl samples off the Balearic Islands, Western Mediterranean. A re-description is provided for all three species and the Folmer fragment of cytochrome oxidase subunit I (COI) obtained for A. levii and H. poecillastroides. This is the second report of A. vellerea in the Mediterranean, the first time that A. levii is reported outside Corsica and the first time that H. poecillastroides is documented outside the Gulf of Lion, France. The systematic allocation of A. levii and H. poecillastroides is discussed based on a COI phylogenetic analysis and morphology. The poorly understood phylogeny of the Haplosclerida does not permit us to find a proper allocation for H. poecillastroides, although its current position in the genus Haliclona or the family Chalinidae is not defensible. On the other hand, A. levii currently fits best in the family Microcionidae, and seems related to some Clathria species with mixed features between Clathria and Acarnus. Considering that the species of the genus Acarnus shares a strong synapomorphy (the possession of Cladotylotes), it is plausible for all Acarnus species to be Microcionids. We conclude that H. poecillastroides needs to be reallocated to a new genus: Xestospongia poecillastroides comb. nov. (Petrosiidae). However, a reallocation of A. levii is not advisable for the moment, as this would imply major systematic changes such as the reallocation of the whole genus Acarnus to Microcionidae, and the redescription of Microcionidae and Acarnidae.
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- 2020
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50. Reproductive Biology of Geodia Species (Porifera, Tetractinellida) From Boreo-Arctic North-Atlantic Deep-Sea Sponge Grounds
- Author
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Koutsouveli, Vasiliki, Cárdenas, Paco, Conejero, Maria, Rapp, Hans Tore, Riesgo, Ana, Koutsouveli, Vasiliki, Cárdenas, Paco, Conejero, Maria, Rapp, Hans Tore, and Riesgo, Ana
- Abstract
Boreo-arctic sponge grounds are essential deep-sea structural habitats that provide important services for the ecosystem. These large sponge aggregations are dominated by demosponges of the genus Geodia (order Tetractinellida, family Geodiidae). However, little is known about the basic biological features of these species, such as their life cycle and dispersal capabilities. Here, we surveyed five deep-sea species of Geodia from the North-Atlantic Ocean and studied their reproductive cycle and strategy using light and electron microscopy. The five species were oviparous and gonochoristic. Synchronous development was observed at individual and population level in most of the species. Oocytes had diameters ranging from 8 μm in previtellogenic stage to 103 μm in vitellogenic stage. At vitellogenic stages, oocytes had high content of lipid yolk entirely acquired by autosynthesis, with no participation of nurse cells. Intense vertical transmission of bacterial symbionts to the oocytes by phagocytosis through pseudopodia was observed, especially in late stages of oogenesis. The density of oocytes within the sponge tissue was on average 10 oocytes/mm2 across all species, higher than that of most temperate and tropical oviparous species studied elsewhere. Spermatic cysts were widespread over the tissue during early stages, or fused in larger cysts, around the canals in later stages, and occupying between 1.5 and 12% of the tissue in males. The reproductive season spanned similar periods for all Geodia spp.: from late spring to early autumn. During the reproductive peak of each species, between 60 and 90% of the population was engaged in reproduction for most species. Given the present hazards that threaten the boreo-arctic tetractinellid sponge grounds, it becomes crucial to understand the processes behind the maintenance and regeneration of populations of keystone deep-sea species in order to predict the magnitude of human impacts and estimate their ability to recover. The, Title in thesis list of papers: Exploring the reproductive biology of the genus Geodia from boreo-arctic North-Atlantic deep-sea sponge grounds
- Published
- 2020
- Full Text
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