402 results on '"C, Sabin"'
Search Results
2. Incremental & Semi-Supervised Learning for Functional Analysis of Protein Sequences.
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Mali Halac, Bahrad A. Sokhansanj, William L. Trimble, Thomas Coard, Norman C. Sabin, Emrecan Ozdogan, Robi Polikar, and Gail L. Rosen
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- 2021
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3. Incremental and Semi-Supervised Learning of 16S-rRNA Genes For Taxonomic Classification.
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Emrecan Ozdogan, Norman C. Sabin, Thomas Gracie, Steven Portley, Mali Halac, Thomas Coard, William L. Trimble, Bahrad A. Sokhansanj, Gail Rosen, and Robi Polikar
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- 2021
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4. Skull ecomorphological variation of narwhals (Monodon monoceros, Linnaeus 1758) and belugas (Delphinapterus leucas, Pallas 1776) reveals phenotype of their hybrids.
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Deborah Vicari, Eline D Lorenzen, Mikkel Skovrind, Paul Szpak, Marie Louis, Morten T Olsen, Richard P Brown, Olivier Lambert, Giovanni Bianucci, Richard C Sabin, and Carlo Meloro
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Medicine ,Science - Abstract
Narwhals and belugas are toothed whales belonging to the Monodontidae. Belugas have a circumpolar Arctic and sub-Artic distribution while narwhals are restricted to the Atlantic Arctic. Their geographical ranges overlap during winter migrations in the Baffin Bay area (Canada/West Greenland) and successful interbreeding may occur. Here, we employed geometric morphometrics on museum specimens to explore the cranium and mandible morphology of a known hybrid (NHMD MCE 1356) and the cranium morphology of a putative hybrid (NHMD 1963.44.1.4) relative to skull morphological variation in the parental species. Specifically, we used 3D models of skulls from 69 belugas, 86 narwhals, and the two known/putative hybrids and 2D left hemi-mandibles from 20 belugas, 64 narwhals and the known hybrid. Skull shape analyses allowed clear discrimination between species. Narwhals are characterised by a relatively short rostrum and wide neurocranium while belugas show a more elongated and narrower cranium. Sexual size dimorphism was detected in narwhals, with males larger than females, but no sexual shape dimorphism was detected in either species (excluding presence/absence of tusks in narwhals). Morphological skull variation was also dependent on different allometric slopes between species and sexes in narwhals. Our analyses showed that the cranium of the known hybrid was phenotypically close to belugas but its 2D hemi-mandible had a narwhal shape and size morphology. Both cranium and mandible were strongly correlated, with the pattern of covariation being similar to belugas. The putative hybrid was a pure male narwhal with extruded teeth. Comparison of genomic DNA supported this result, and stable carbon and nitrogen isotope values suggested that the putative hybrid had a more benthic foraging strategy compared to narwhals. This work demonstrates that although the known hybrid could be discriminated from narwhals and belugas, detection of its affinities with these parental species was dependent on the part of the skull analysed.
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- 2022
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5. Stable Isotope Analysis of Specimens of Opportunity Reveals Ocean-Scale Site Fidelity in an Elusive Whale Species
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Kerri J. Smith, Clive N. Trueman, Christine A. M. France, Jed P. Sparks, Andrew C. Brownlow, Michael Dähne, Nicholas J. Davison, Guðmundur Guðmundsson, Kamal Khidas, Andrew C. Kitchener, Bram W. Langeveld, Véronique Lesage, Hanneke J. M. Meijer, John J. Ososky, Richard C. Sabin, Zena L. Timmons, Gísli A. Víkingsson, Frederick W. Wenzel, and Markus J. Peterson
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bone ,muscle ,skin ,Sowerby's beaked whale ,Mesoplodon bidens ,δ13 C and δ15 N ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Elusive wildlife are challenging to study, manage, or conserve, as the difficulty of obtaining specimens or conducting direct observations leads to major data deficiencies. Specimens of opportunity, such as salvaged carcasses or museum specimens, are a valuable source of fundamental biological and ecological information on data-deficient, elusive species, increasing knowledge of biodiversity, habitat and range, and population structure. Stable isotope analysis is a powerful indirect tool that can be used to infer foraging behavior and habitat use retrospectively from archived specimens. Beaked whales are a speciose group of cetaceans that are challenging to study in situ, and although Sowerby's beaked whale (Mesoplodon bidens) was discovered >200 years ago, little is known about its biology. We measured δ13C and δ15N stable isotope composition in bone, muscle, and skin tissue from 102 Sowerby's beaked whale specimens of opportunity collected throughout the North Atlantic Ocean to infer movement ecology and spatial population structure. Median δ13C and δ15N values in Sowerby's beaked whale bone, muscle, and skin tissues significantly differed between whales sampled from the east and west North Atlantic Ocean. Quadratic discriminant analysis that simultaneously considered δ13C and δ15N values correctly assigned >85% of the specimens to their collection region for all tissue types. These findings demonstrate Sowerby's beaked whale exhibits both short- and long-term site fidelity to the region from which the specimens were collected, suggest that this species is composed of two or more populations or exhibits a metapopulation structure, and have implications for conservation and management policy. Stable isotope analysis of specimens of opportunity proved a highly successful means of generating new spatial ecology data for this elusive species and is a method that can be effectively applied to other elusive species.
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- 2021
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6. Protocol of a two arm randomised, multi-centre, 12-month controlled trial: evaluating the impact of a Cognitive Behavioural Therapy (CBT)-based intervention Supporting UPtake and Adherence to antiretrovirals (SUPA) in adults with HIV
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R. Horne, E. Glendinning, K. King, T. Chalder, C. Sabin, A. S. Walker, L. J. Campbell, I. Mosweu, J. Anderson, S. Collins, R. Jopling, P. McCrone, H. Leake Date, S. Michie, M. Nelson, N. Perry, J. A. Smith, W. Sseruma, V. Cooper, and On behalf of the SUPA Group
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Adherence ,Engagement ,Antiretroviral therapy ,HIV ,Randomised controlled trial ,Beliefs about medicines ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Delay to start antiretroviral therapy (ART) and nonadherence compromise the health and wellbeing of people living with HIV (PLWH), raise the cost of care and increase risk of transmission to sexual partners. To date, interventions to improve adherence to ART have had limited success, perhaps because they have failed to systematically elicit and address both perceptual and practical barriers to adherence. The primary aim of this study is to determine the efficacy of the Supporting UPtake and Adherence (SUPA) intervention. Methods This study comprises 2 phases. Phase 1 is an observational cohort study, in which PLWH who are ART naïve and recommended to take ART by their clinician complete a questionnaire assessing their beliefs about ART over 12 months. Phase 2 is a randomised controlled trial (RCT) nested within the observational cohort study to investigate the effectiveness of the SUPA intervention on adherence to ART. PLWH at risk of nonadherence (based on their beliefs about ART) will be recruited and randomised 1:1 to the intervention (SUPA intervention + usual care) and control (usual care) arms. The SUPA intervention involves 4 tailored treatment support sessions delivered by a Research Nurse utilising a collaborative Cognitive Behavioural Therapy (CBT) and Motivational Interviewing (MI) approach. Sessions are tailored to individual needs and preferences based on the individual patient’s perceptions and practical barriers to ART. An animation series and intervention manual have been developed to communicate a rationale for the personal necessity for ART and illustrate concerns and potential solutions. The primary outcome is adherence to ART measured using Medication Event Monitoring System (MEMS). Three hundred seventy-two patients will be sufficient to detect a 15% difference in adherence with 80% power and an alpha of 0.05. Costs will be compared between intervention and control groups. Costs will be combined with the primary outcome in cost-effectiveness analyses. Quality adjusted life-years (QALYs) will also be estimated over the follow-up period and used in the analyses. Discussion The findings will enable patients, healthcare providers and policy makers to make informed decisions about the value of the SUPA intervention. Trial registration The trial was retrospectively registered 21/02/2014, ISRCTN35514212.
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- 2019
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7. Ecomorphology of toothed whales (Cetacea, Odontoceti) as revealed by 3D skull geometry
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Deborah Vicari, Michael R. McGowen, Olivier Lambert, Richard P. Brown, Giovanni Bianucci, Richard C. Sabin, and Carlo Meloro
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Ecology, Evolution, Behavior and Systematics - Abstract
Extant odontocetes (toothed whales) exhibit differences in body size and brain mass, biosonar mode, feeding strategies, and diving and habitat adaptations. Strong selective pressures associated with these factors have likely contributed to the morphological diversification of their skull. Here, we used 3D landmark geometric morphometric data from the skulls of 60 out of ~ 72 extant odontocete species and a well-supported phylogenetic tree to test whether size and shape variation are associated with ecological adaptations at an interspecific scale. Odontocete skull morphology exhibited a significant phylogenetic signal, with skull size showing stronger signal than shape. After accounting for phylogeny, significant associations were detected between skull size and biosonar mode, body length, brain and body mass, maximum and minimum prey size, and maximum peak frequency. Brain mass was also strongly correlated with skull shape together with surface temperature and average and minimum prey size. When asymmetric and symmetric components of shape were analysed separately, a significant correlation was detected between sea surface temperature and both symmetric and asymmetric components of skull shape, and between diving ecology and the asymmetric component. Skull shape variation of odontocetes was strongly influenced by evolutionary allometry but most of the associations with ecological variables were not supported after phylogenetic correction. This suggests that ecomorphological feeding adaptations vary more between, rather than within, odontocete families, and functional anatomical patterns across odontocete clades are canalised by size constraints.
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- 2023
8. The Prevalence and Patterns of Menopausal Symptoms in Women Living with HIV
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H, Okhai, C, Sabin, K, Haag, L, Sherr, R, Dhairyawan, J, Shephard, G, Richard, F, Burns, F, Post, R, Jones, Y, Gilleece, and S, Tariq
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Sleep Wake Disorders ,Infectious Diseases ,Social Psychology ,Hot Flashes ,Prevalence ,Public Health, Environmental and Occupational Health ,Humans ,Female ,HIV Infections ,Menopause - Abstract
Increasing numbers of women with HIV are experiencing menopause. We use data from a large, representative sample of women with HIV to describe the prevalence and clustering of menopausal symptoms amongst pre-, peri- and post-menopausal women using hierarchical agglomerative cluster analysis. Of the 709 women included, 21.6%, 44.9% and 33.6% were pre-, peri- and post-menopausal, respectively. Joint pain (66.4%) was the most commonly reported symptom, followed by hot flashes (63.0%), exhaustion (61.6%) and sleep problems (61.4%). All symptoms were reported more commonly by peri- and post-menopausal women compared to pre-menopausal women. Psychological symptoms and sleep problems clustered together at all menopausal stages. Somatic and urogenital symptom clusters emerged more distinctly at peri- and post-menopause. We recommend regular and proactive assessment of menopausal symptoms in midlife women with HIV, with an awareness of how particular patterns of symptoms may evolve over the menopausal transition.
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- 2022
9. Associations with sub-optimal clinic attendance and reasons for missed appointments among heterosexual women and men living with HIV in London
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A R Howarth, V Apea, S Michie, S Morris, M Sachikonye, C H Mercer, A Evans, V C Delpech, C Sabin, and F M Burns
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Male ,Infectious Diseases ,Social Psychology ,London ,Social Stigma ,Public Health, Environmental and Occupational Health ,Humans ,Female ,HIV Infections ,Heterosexuality ,Ambulatory Care Facilities - Abstract
Poor engagement in HIV care is associated with poorer health outcomes and increased mortality. Our survey examined experiential and circumstantial factors associated with clinic attendance among women (n = 250) and men (n = 106) in London with heterosexually-acquired HIV. While no associations were found for women, among men, sub-optimal attendance was associated with insecure immigration status (25.6% vs. 1.8%), unstable housing (32.6% vs. 10.2%) and reported effect of HIV on daily activities (58.7% vs. 40.0%). Among women and men on ART, it was associated with missing doses of ART (OR = 2.96, 95% CI:1.74–5.02), less belief in the necessity of ART (OR = 0.56, 95% CI:0.35–0.90) and more concern about ART (OR = 3.63, 95% CI:1.45–9.09). Not wanting to think about being HIV positive was the top reason for ever missing clinic appointments. It is important to tackle stigma and the underlying social determinants of health to improve HIV prevention, and the health and well-being of people living with HIV.
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- 2022
10. Combining simulation modeling and stable isotope analyses to reconstruct the last known movements of one of Nature’s giants
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Clive N. Trueman, Andrew L. Jackson, Katharyn S. Chadwick, Ellen J. Coombs, Laura J. Feyrer, Sarah Magozzi, Richard C. Sabin, and Natalie Cooper
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Carbon stable isotopes ,Movement models ,Movement ,Models ,Sclerochronology ,Blue whale ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
The spatial ecology of rare, migratory oceanic animals is difficult to study directly. Where incremental tissues are available, their chemical composition can provide valuable indirect observations of movement and diet. Interpreting the chemical record in incremental tissues can be highly uncertain, however, as multiple mechanisms interact to produce the observed data. Simulation modeling is one approach for considering alternative hypotheses in ecology and can be used to consider the relative likelihood of obtaining an observed record under different combinations of ecological and environmental processes. Here we show how a simulation modeling approach can help to infer movement behaviour based on stable carbon isotope profiles measured in incremental baleen tissues of a blue whale (Balaenoptera musculus). The life history of this particular specimen, which stranded in 1891 in the UK, was selected as a case study due to its cultural significance as part of a permanent display at the Natural History Museum, London. We specifically tested whether measured variations in stable isotope compositions across the analysed baleen plate were more consistent with residency or latitudinal migrations. The measured isotopic record was most closely reproduced with a period of residency in sub-tropical waters for at least a full year followed by three repeated annual migrations between sub-tropical and high latitude regions. The latitudinal migration cycle was interrupted in the year prior to stranding, potentially implying pregnancy and weaning, but isotopic data alone cannot test this hypothesis. Simulation methods can help reveal movement information coded in the biochemical compositions of incremental tissues such as those archived in historic collections, and provides context and inferences that are useful for retrospective studies of animal movement, especially where other sources of individual movement data are sparse or challenging to validate.
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- 2019
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11. Skull morphological variation in a British stranded population of false killer whale (Pseudorca crassidens): a three-dimensional geometric morphometric approach
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Deborah Vicari, Richard C. Sabin, Richard P. Brown, Olivier Lambert, Giovanni Bianucci, and Carlo Meloro
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Animal Science and Zoology ,Ecology, Evolution, Behavior and Systematics - Abstract
The false killer whale (Pseudorca crassidens (Owen, 1846)) is a globally distributed delphinid that shows geographical differentiation in its skull morphology. We explored cranial morphological variation in a sample of 85 skulls belonging to a mixed sex population stranded in the Moray Firth, Scotland, in 1927. A three-dimensional digitizer (Microscribe 2GX) was used to record 37 anatomical landmarks on the cranium and 25 on the mandible to investigate size and shape variation and to explore sexual dimorphism using geometric morphometric. Males showed greater overall skull size than females, whereas no sexual dimorphism could be identified in cranial and mandibular shape. Allometric skull changes occurred in parallel for both males and females, supporting the lack of sexual shape dimorphism for this particular sample. Also, fluctuating asymmetry did not differ between crania of males and females. This study confirms the absence of sexual shape dimorphism and the presence of a sexual size dimorphism in this false killer whale population.
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- 2022
12. Association of pregnancy with engagement in HIV care among women with HIV in the UK: a cohort study
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Helen Peters, Ashini Fox, Roy Trevelion, Ian Fairley, Deenan Pillay, Jonathan Ainsworth, Fiona Burns, C Sabin, Adrian Palfreeman, Teresa Hill, Richard Gilson, Clifford Leen, Andrew N. Phillips, Duncan Churchill, Jane Anderson, David Chadwick, Sris Allan, Phillip Hay, A Ustianowski, Sophie Jose, Dushyant Mital, Mark Gompels, Stephen Kegg, Yvonne Gilleece, Achim Schwenk, Rajesh Hembrom, Claire Thorne, Ade Apoola, Hajra Okhai, Shema Tariq, Chloe Orkin, Ashley Price, Margaret A. Johnson, Mark T. Nelson, Caroline A. Sabin, Frank A. Post, Jillian Pritchard, John P. Walsh, Anjum Tariq, David Dunn, Rageshri Dhairyawan, and Valerie Delpech
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Adult ,medicine.medical_specialty ,Epidemiology ,Immunology ,Psychological intervention ,Ethnic group ,HIV Infections ,Logistic regression ,Cohort Studies ,Pregnancy ,Virology ,Humans ,Medicine ,Pregnancy Complications, Infectious ,Child ,business.industry ,Obstetrics ,Attendance ,Odds ratio ,medicine.disease ,United Kingdom ,CD4 Lymphocyte Count ,Infectious Diseases ,Cohort ,Female ,business ,Cohort study - Abstract
BACKGROUND Women with HIV face challenges in engaging in HIV care post partum. We aimed to examine changes in engagement in HIV care through clinic attendance before, during, and after pregnancy, compared with matched women with HIV who had never had a recorded pregnancy. METHODS In this cohort study, we describe changes in engagement in HIV care before, during, and after pregnancy among women with HIV from the UK Collaborative HIV Cohort (CHIC) study from 25 HIV clinics in the UK with a livebirth reported to the National Surveillance of HIV in Pregnancy and Childhood between Jan 1, 2000, and Dec 31, 2017. To investigate whether changes were specific to HIV, we compared these changes to those over equivalent periods among non-pregnant women with HIV in the UK CHIC study matched for ethnicity, year of conception, age, CD4 cell count, viral suppression, and antiretroviral therapy use. Analyses were via logistic regression using generalised estimated equations with an interaction between case-control status (pregnant women vs non-pregnant women) and pregnancy or pseudo pregnancy (for non-pregnant women) stage. FINDINGS 1116 matched pairs of pregnant and non-pregnant women were included (median age 34 years [IQR 30-38], 80·1% Black African, 12·5% white). 69 330 person-months of follow-up were recorded, 25 412 in the before stage, 18 897 during, and 25 021 after pregnancy or pseudo pregnancy stages. Among pregnant women, the proportion of time engaged in care increased during pregnancy (8477 [90·5%] of 9371 person-months) and after pregnancy (10 501 [84·6%] of 12 407), compared with before pregnancy (9979 [78·5%] of 12 707). Among non-pregnant women in the control group, engagement in HIV care remained stable across the three equivalent stages (9688 [76·3%] of 12 705 person-months before pseudo pregnancy; 7463 [78·3%] of 9526 during pseudo pregnancy; and 9892 [78·4%] of 12 614 after pseudo pregnancy). The association of engagement in HIV care with pregnancy or pseudo pregnancy stage differed significantly by case-control status (pinteraction
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- 2021
13. Oral Abstracts
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C Sabin, H Curtis, Laura Waters, R. Raya, and David Chadwick
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0303 health sciences ,2019-20 coronavirus outbreak ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Health Policy ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Association (object-oriented programming) ,Human immunodeficiency virus (HIV) ,030312 virology ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Infectious Diseases ,Family medicine ,medicine ,Pharmacology (medical) ,030212 general & internal medicine ,business ,Reproductive health - Published
- 2021
14. Quality of life assessment in people living with and without HIV: UPBEAT study
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E. Alvarez, A.M. Barry, A.G. Cotter, C. Sabin, S. Simelane, A. Macken, J.J. Brady, E. Kavanagh, G. McCarthy, J. Compston, and P.W.G. Mallon
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Microbiology ,QR1-502 ,Public aspects of medicine ,RA1-1270 - Published
- 2016
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15. Non-nucleoside reverse transcriptase inhibitor-based combination antiretroviral therapy is associated with lower cell- associated HIV RNA and DNA levels compared to protease inhibitor-based therapy
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O Erlwein, A Winston, Peter Reiss, J Villaudy, B Berkhout, M. van der Valk, DP Benschop, A Kalsbeek, Ben Berkhout, M Martens, C Kingsley, T Booiman, Neeltje A. Kootstra, M Wezel, M Moreno-Villanueva, Paolo Garagnani, N Doyle, S Salvioli, BC Elsenga, JA ter Stege, T van der Kuyl, T Su, FR Janssen, BA Schmand, MM Mangas Ruiz, T Sindlinger, I Maurer, A Bürkle, M Capri, W Zikkenheiner, C Libert, M Chiricolo, Robert Leech, Ferdinand Wnm Wit, J Pothof, Caroline A. Sabin, Cblm Majoie, M Gisslén, A Lovell, Mmj Hillebregt, S Zaheri, I Visser, Claudio Franceschi, M de Graaff-Teulen, Alexander O. Pasternak, S Kovalev, M Prins, M Totté, NA Kootstra, H Zetterberg, D de Francesco, JH Cole, K Legg, Mwa Caan, J Schouten, M Klein Twennaar, Jelmer Vroom, J Berkel, AF Girigorie, P Reiss, S Moll, S Dewaele, K Weijer, D Fuchs, Marijn de Bruin, Alan Winston, Chiara Pirazzini, R.A. van Zoest, F Dall'Olio, Davide De Francesco, David J. Sharp, A Keller, AM Harskamp-Holwerda, J Underwood, F. W. Wit, GJ Geurtsen, P Portegies, Ymc Ruijs, M Stott, Margreet Bakker, M Heidenrijk, KW Kooij, Phlt Bisschop, G Guaraldi, L McDonald, C Sabin, AO Pasternak, J Hoeijmakers, Jan M. Prins, HG Ruhé, E Frankin, D Burger, Commission of the European Communities, National Institute for Health Research, and Pasternak AO, Vroom J, Kootstra NA, Wit FW, de Bruin M, De Francesco D, Bakker M, Sabin CA, Winston A, Prins JM, Reiss P, Berkhout B. Collaboratori C Franceschi, P Garagnani, C Pirazzini, M Capri, F Dall'Olio, M Chiricolo, S Salvioli
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Life Sciences & Biomedicine - Other Topics ,DYNAMICS ,Male ,PROVIRUSES PRODUCE ,medicine ,Time Factors ,Co-morBidity in Relation to Aids (COBRA) Collaboration ,HIV Infections ,Virus Replication ,0601 Biochemistry and Cell Biology ,Nucleoside Reverse Transcriptase Inhibitor ,chemistry.chemical_compound ,Transcription (biology) ,virus infection ,Biology (General) ,Randomized Controlled Trials as Topic ,INFECTED PATIENTS ,Reverse-transcriptase inhibitor ,General Neuroscience ,virus diseases ,General Medicine ,Middle Aged ,Viral Load ,Europe ,Treatment Outcome ,viru ,RNA, Viral ,Reverse Transcriptase Inhibitors ,Drug Therapy, Combination ,Female ,Life Sciences & Biomedicine ,medicine.drug ,Adult ,antiviral drug ,Nevirapine ,Efavirenz ,QH301-705.5 ,RALTEGRAVIR INTENSIFICATION ,Science ,infectious disease ,VIREMIA ,virus ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Healthcare improvement science Radboud Institute for Health Sciences [Radboudumc 18] ,antiviral drugs ,All institutes and research themes of the Radboud University Medical Center ,Humans ,Protease inhibitor (pharmacology) ,Biology ,Science & Technology ,General Immunology and Microbiology ,business.industry ,PERSISTENCE ,microbiology ,RNA ,HIV ,HIV Protease Inhibitors ,Virology ,IMMUNE ACTIVATION ,lnfectious Diseases and Global Health Radboud Institute for Health Sciences [Radboudumc 4] ,Cross-Sectional Studies ,chemistry ,REPLICATION ,DNA, Viral ,RESERVOIR ,business ,DECAY - Abstract
Background:It remains unclear whether combination antiretroviral therapy (ART) regimens differ in their ability to fully suppress human immunodeficiency virus (HIV) replication. Here, we report the results of two cross-sectional studies that compared levels of cell-associated (CA) HIV markers between individuals receiving suppressive ART containing either a non-nucleoside reverse transcriptase inhibitor (NNRTI) or a protease inhibitor (PI).Methods:CA HIV unspliced RNA and total HIV DNA were quantified in two cohorts (n = 100, n = 124) of individuals treated with triple ART regimens consisting of two nucleoside reverse transcriptase inhibitors (NRTIs) plus either an NNRTI or a PI. To compare CA HIV RNA and DNA levels between the regimens, we built multivariable models adjusting for age, gender, current and nadir CD4+ count, plasma viral load zenith, duration of virological suppression, NRTI backbone composition, low-level plasma HIV RNA detectability, and electronically measured adherence to ART.Results:In both cohorts, levels of CA HIV RNA and DNA strongly correlated (rho = 0.70 and rho = 0.54) and both markers were lower in NNRTI-treated than in PI-treated individuals. In the multivariable analysis, CA RNA in both cohorts remained significantly reduced in NNRTI-treated individuals (padj = 0.02 in both cohorts), with a similar but weaker association between the ART regimen and total HIV DNA (padj = 0.048 and padj = 0.10). No differences in CA HIV RNA or DNA levels were observed between individual NNRTIs or individual PIs, but CA HIV RNA was lower in individuals treated with either nevirapine or efavirenz, compared to PI-treated individuals.Conclusions:All current classes of antiretroviral drugs only prevent infection of new cells but do not inhibit HIV RNA transcription in long-lived reservoir cells. Therefore, these differences in CA HIV RNA and DNA levels by treatment regimen suggest that NNRTIs are more potent in suppressing HIV residual replication than PIs, which may result in a smaller viral reservoir size.Funding:This work was supported by ZonMw (09120011910035) and FP7 Health (305522).
- Published
- 2021
16. No need for secondary Pneumocystis jirovecii pneumonia prophylaxis in adult people living with HIV from Europe on ART with suppressed viraemia and a CD4 cell count greater than 100 cells/µL
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Atkinson, A. Miro, J.M. Mocroft, A. Reiss, P. Kirk, O. Morlat, P. Ghosn, J. Stephan, C. Mussini, C. Antoniadou, A. Doerholt, K. Girardi, E. De Wit, S. Kraus, D. Zwahlen, M. Furrer, H. De Wit, S. Antoniadou, A. Castagna, A. Doerholt, K. Fätkenheuer, G. Raben, D. Teira, R. Zangerle, R. Judd, A. Zangerle, R. Touloumi, G. Warszawski, J. Meyer, L. Dabis, F. Krause, M.M. Leport, C. Wittkop, L. Wit, F. Prins, M. Bucher, H. Gibb, D. Fätkenheuer, G. Del Amo, J. Obel, N. Thorne, C. Pérez-Hoyos, S. Hamouda, O. Bartmeyer, B. Chkhartishvili, N. Noguera-Julian, A. Antinori, A. d’Arminio Monforte, A. Brockmeyer, N. Prieto, L. Conejo, P.R. Soriano-Arandes, A. Battegay, M. Kouyos, R. Casabona, J. Goetghebuer, T. Sönnerborg, A. Torti, C. Sabin, C. Teira, R. Garrido, M. Haerry, D. Costagliola, D. d’Arminio-Monforte, A. del Amo, J. Raben, D. Chêne, G. Judd, A. Conejo, P.R. Barger, D. Schwimmer, C. Termote, M. Wittkop, L. Frederiksen, C.M. Raben, D. Brandt, R.S. Berenguer, J. Bohlius, J. Bouteloup, V. Bucher, H. Cozzi-Lepri, A. Dabis, F. d’Arminio Monforte, A. Davies, M.-A. del Amo, J. Dorrucci, M. Dunn, D. Egger, M. Guiguet, M. Grabar, S. Judd, A. Lambotte, O. Leroy, V. Lodi, S. Matheron, S. Meyer, L. Monge, S. Nakagawa, F. Paredes, R. Phillips, A. Puoti, M. Rohner, E. Schomaker, M. Smit, C. Sterne, J. Thiebaut, R. Thorne, C. Wqetu, C. van der Valk, M. Wittkop, L. the Opportunistic Infections Working Group of the Collaboration of Observational HIV Epidemiological Research Europe (COHERE) study in EuroCOORD
- Abstract
Introduction: Since the beginning of the HIV epidemic in resource-rich countries, Pneumocystis jirovecii pneumonia (PjP) is one of the most frequent opportunistic AIDS-defining infections. The Collaboration of Observational HIV Epidemiological Research Europe (COHERE) has shown that primary Pneumocystis jirovecii Pneumonia (PjP) prophylaxis can be safely withdrawn in patients with CD4 counts of 100 to 200 cells/µL if plasma HIV-RNA is suppressed on combination antiretroviral therapy. Whether this holds true for secondary prophylaxis is not known, and this has proved difficult to determine due to the much lower population at risk. Methods: We estimated the incidence of secondary PjP by including patient data collected from 1998 to 2015 from the COHERE cohort collaboration according to time-updated CD4 counts, HIV-RNA and use of PjP prophylaxis in persons >16 years of age. We fitted a Poisson generalized additive model in which the smoothed effect of CD4 was modelled by a restricted cubic spline, and HIV-RNA was stratified as low (10,000copies/mL). Results: There were 373 recurrences of PjP during 74,295 person-years (py) in 10,476 patients. The PjP incidence in the different plasma HIV-RNA strata differed significantly and was lowest in the low stratum. For patients off prophylaxis with CD4 counts between 100 and 200 cells/µL and HIV-RNA below 400 copies/mL, the incidence of recurrent PjP was 3.9 (95% CI: 2.0 to 5.8) per 1000 py, not significantly different from patients on prophylaxis in the same stratum (1.9, 95% CI: 0.1 to 3.7). Conclusions: HIV viraemia importantly affects the risk of recurrent PjP. In virologically suppressed patients on ART with CD4 counts of 100 to 200/µL, the incidence of PjP off prophylaxis is below 10/1000 py. Secondary PjP prophylaxis may be safely withheld in such patients. While European guidelines recommend discontinuing secondary PjP prophylaxis only if CD4 counts rise above 200 cells/mL, the latest US Guidelines consider secondary prophylaxis discontinuation even in patients with a CD4 count above 100 cells/µL and suppressed viral load. Our results strengthen and support this US recommendation. © 2021 The Authors. Journal of the International AIDS Society published by John Wiley & Sons Ltd on behalf of the International AIDS Society.
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- 2021
17. Antiretroviral treatment outcomes among late HIV presenters initiating treatment with integrase inhibitors or protease inhibitors
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Alfonso Cabello, Álvaro Mena, Annette Haberl, Miguel Górgolas, Gerrit Kann, Gundolf Schuettfort, Lisa Hamzah, Timo Wolf, Patrick W. G. Mallon, L Boekenkamp, Aoife G. Cotter, P De Leuw, J Doctor, M Del Palacio Tamarit, Eva Herrmann, Pavel Khaykin, Christoph Stephan, and C Sabin
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Delayed Diagnosis ,Anti-HIV Agents ,Integrase inhibitor ,HIV Infections ,Integrase Inhibitors ,03 medical and health sciences ,0302 clinical medicine ,Acquired immunodeficiency syndrome (AIDS) ,Internal medicine ,Antiretroviral Therapy, Highly Active ,Medicine ,Humans ,Pharmacology (medical) ,Protease inhibitor (pharmacology) ,Protease Inhibitors ,030212 general & internal medicine ,Treatment Failure ,Adverse effect ,Retrospective Studies ,Univariate analysis ,business.industry ,Health Policy ,Viral Load ,medicine.disease ,030112 virology ,Discontinuation ,Europe ,Infectious Diseases ,Treatment Outcome ,Cohort ,Female ,business ,Viral load - Abstract
OBJECTIVES The aim of the study was to investigate the efficacy and safety of first-line antiretroviral therapy (ART) with integrase inhibitor (INI) or protease inhibitor (PI)-based regimens in patients with low CD4 cell counts and/or an AIDS-defining disease. METHODS We conducted a retrospective, multicentre analysis to investigate discontinuation proportions and virological response in patients with CD4 cell counts
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- 2020
18. A new spectroscopic analysis of the massive O + O type binary HD 54662 AB
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C. Sabin-Sanjulian, M. V. McSwain, C. Putkuri, Nidia Morrell, Rodolfo H. Barbá, Alexander W. Fullerton, S. S. Diaz, G. Ferrero, Tabetha S. Boyajian, J. Maíz Apellániz, José Ignacio Arias, Roberto Claudio Gamen, Maíz Apellániz, J. [0000-0003-0825-3443], Simón Díaz, S. [0000-0003-1168-3524], Boyajian, T. S. [0000-0001-9879-9313], Barbá, R. H. [0000-0003-1086-1579], Arias, J. I. [0000-0001-7500-7352], Gamen, R. C. [0000-0002-5227-9627], Morrell, N. I. [0000-0003-2535-3091], Comisión Nacional de Investigación Científica y Tecnológica (CONICYT), National Aeronautics & Space Administration (NASA), National Science Foundation (NSF), Dirección de Investigación y Desarrollo (DIDULS) de la Universidad de La Serena, Unidad de Excelencia Científica María de Maeztu Centro de Astrobiología del Instituto Nacional de Técnica Aeroespacial y CSIC, MDM-2017-0737, and Fondo Nacional de Desarrollo Científico y Tecnológico (FONDECYT)
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fundamental parameters [stars] ,stars: individual: HD 54662 AB ,Binary number ,Type (model theory) ,spectroscopic [binaries] ,01 natural sciences ,early-type [stars] ,individual: HD 54662 AB [stars] ,purl.org/becyt/ford/1 [https] ,individual [Stars] ,stars: atmospheres ,0103 physical sciences ,HD 54662 AB ,010303 astronomy & astrophysics ,early type [Stars] ,Physics ,atmospheres [stars] ,010308 nuclear & particles physics ,Astronomy and Astrophysics ,purl.org/becyt/ford/1.3 [https] ,stars: early-type ,Astronomía ,Crystallography ,Space and Planetary Science ,stars: fundamental parameters ,binaries: spectroscopic - Abstract
HD 54662 AB is one of the three O + OB binaries known so far with orbital period longer than 1000 d, offering the opportunity to test scenarios of massive star formation and models of single stellar evolution. Here, we present a detailed study of this system based on new high-resolution spectra and data. A disentangling method is used to recover the individual spectra of the primary and secondary components, which are classified as O6.5 V(n)z and O7.5 Vz, respectively. Combining radial velocity measurements and astrometric data, a new absolute orbit with a period of 2113 ± 9 d and an eccentricity of 0.062 ± 0.008 is determined, confirming previous findings. However, absolute masses of 23.8 ± 1.1 M¿ for the primary and 20.3 ± 1.1 M¿ for the secondary are obtained, differing from previous determinations but in reasonable agreement with the spectral types of the stars. Primary and secondary components show remarkably different projected rotational velocities (160 and ¿40 $\rm km\, s^{-1}$, respectively), which is probably related to the formation process of the binary. Contrary to previously interpretations, the star with broader spectral features is the most massive object in the system. Stellar and wind parameters of both stars are derived through quantitative spectroscopic analysis of the disentangled spectra using fastwind models, and they are consistent with the current calibrations for O-type stars. Evolutionary masses and ages are also computed with the bonnsai tool. Ages below 2.5 Ma are obtained, in agreement with the youth expected from their Vz nature., With funding from the Spanish government through the "María de Maeztu Unit of Excellence" accreditation (MDM-2017-0737)
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- 2020
19. 24-hours wind speed forecasting and wind power generation in La Serena (Chile)
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C. Sabin-Sanjulian, Julio Marín, Carlos H. López-Caraballo, Juan A. Lazzús, Pedro Vega, Ignacio Salfate, and Fernando Cuturrufo
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Wind power generation ,Meteorology ,Renewable Energy, Sustainability and the Environment ,business.industry ,020209 energy ,Energy Engineering and Power Technology ,02 engineering and technology ,Turbine ,Wind speed ,Power (physics) ,Renewable energy ,0202 electrical engineering, electronic engineering, information engineering ,Environmental science ,Production (economics) ,business - Abstract
This article presents 24-h wind speed forecasting for the city of La Serena in Chile and a methodology to explore forecasting effects on the production of wind turbine power. To that end, we used meteorological data from a weather station located in the southern zone of the hyper-arid Atacama Desert. In this area, energy resources are economically and environmentally important, and wind speed forecasting plays a vital role in the management and marketing processes of wind potential via wind farms. To contribute to the development of this energy, we propose carrying out the short-term prediction of 12 and 24 h ahead (identified as Ws( t + 12) and Ws( t + 24), respectively) using an artificial neural network with backpropagation approach. Hourly time series of wind speed, temperature, and relative humidity (from 2003 to 2006) were considered to characterize the artificial neural network in the training phase, while we used data from the year 2007 to check the efficiency of our prediction. For artificial neural network Ws( t + 12) and Ws( t + 24) models, we obtained similar performance of wind speed prediction with root mean square error of around 0.7 m s−1 and with maximum and minimum residuals of +4 and ‒4 m s−1, respectively. Based on the results, we gain a reliable tool to characterize wind speed properties in the range of 1 day within 20% of uncertainty. Moreover, this tool becomes useful to study the effects of our artificial neural network Ws( t + 12) and Ws( t + 24) models on the generation of wind energy from a wind power turbine parametrization.
- Published
- 2018
20. Monitoring liver transplant rates in persons diagnosed with hepatitis C:a data linkage study, England 2008 to 2017
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Mary Ramsay, Sema Mandal, Georgina Ireland, Ruth Simmons, Matthew Hickman, and C Sabin
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hepatitis C virus ,Adult ,Male ,medicine.medical_specialty ,Cirrhosis ,Adolescent ,medicine.medical_treatment ,Information Storage and Retrieval ,Hepacivirus ,Kaplan-Meier Estimate ,Liver transplantation ,Rate ratio ,Antiviral Agents ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Interquartile range ,Virology ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Registries ,Aged ,Retrospective Studies ,Aged, 80 and over ,blood-borne infections ,liver transplantation ,business.industry ,Incidence (epidemiology) ,Research ,Incidence ,direct‐acting antivirals ,Public Health, Environmental and Occupational Health ,Hepatitis C ,Hepatitis C, Chronic ,Middle Aged ,medicine.disease ,Transplant Recipients ,Transplantation ,England ,Hepatocellular carcinoma ,HCV ,030211 gastroenterology & hepatology ,epidemiology ,Female ,business ,laboratory surveillance - Abstract
Introduction Liver transplantation is an important measure of burden from hepatitis C virus (HCV)-associated liver disease. Aims To describe transplant rates and survival in individuals with HCV infection from 2008 to 2017 in England through data linkage. Methods This is a retrospective observational cohort study. Laboratory reports of HCV infection were linked to the Liver Transplant Registry for individuals aged 15 years and over, first diagnosed between 1998 and 2017. We estimated age-sex standardised incidence rates and used Poisson regression to investigate predictors of liver transplantation and test for a change in incidence after introduction of direct-acting antivirals (DAAs) in 2014. Kaplan-Meier survival analysis was used to calculate post-transplant survival rates. Results Of 124,238 individuals diagnosed with HCV infection, 1,480 were registered and 1,217 received a liver transplant. Of individuals registered, 1,395 had post-HCV cirrhosis and 636 had hepatocellular carcinoma (618 also had post-HCV cirrhosis). Median time from HCV diagnosis to transplant was 3.4 years (interquartile range: 1.3–6.8 years). Liver transplant rates were lower 2014–17 compared with 2011–13 (incidence rate ratio: 0.64; 95% confidence interval: 0.55–0.76). Survival rates were 93.4%, 79.9% and 67.9% at 1, 5 and 10 years, respectively. Data linkage showed minimal under-reporting of HCV in the transplant registry. Conclusion In the post-DAA era, liver transplant rates have fallen in individuals with HCV infection, showing early impact of HCV treatment scale-up; but the short time from HCV diagnosis to liver transplant suggests late diagnosis is a problem.
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- 2019
21. Additional file 2: of Protocol of a two arm randomised, multi-centre, 12-month controlled trial: evaluating the impact of a Cognitive Behavioural Therapy (CBT)-based intervention Supporting UPtake and Adherence to antiretrovirals (SUPA) in adults with HIV
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R. Horne, E. Glendinning, K. King, T. Chalder, C. Sabin, A. Walker, L. J. Campbell, I. Mosweu, J. Anderson, S. Collins, R. Jopling, P. McCrone, H. Leake Date, S. Michie, M. Nelson, N. Perry, J. A. Smith, W. Sseruma, and V. Cooper
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Summary of data collection at each timepoint (Phase 2 â trial). (DOCX 41 kb)
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- 2019
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22. Additional file 1: of Protocol of a two arm randomised, multi-centre, 12-month controlled trial: evaluating the impact of a Cognitive Behavioural Therapy (CBT)-based intervention Supporting UPtake and Adherence to antiretrovirals (SUPA) in adults with HIV
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R. Horne, E. Glendinning, K. King, T. Chalder, C. Sabin, A. Walker, L. J. Campbell, I. Mosweu, J. Anderson, S. Collins, R. Jopling, P. McCrone, H. Leake Date, S. Michie, M. Nelson, N. Perry, J. A. Smith, W. Sseruma, and V. Cooper
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Summary of data collection at each timepoint (Phase 1 â observational study). (DOCX 14 kb)
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- 2019
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23. Recent trends and patterns in HIV-1 transmitted drug resistance in the United Kingdom
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A, Tostevin, E, White, D, Dunn, S, Croxford, V, Delpech, I, Williams, D, Asboe, A, Pozniak, D, Churchill, A M, Geretti, D, Pillay, C, Sabin, A, Leigh-Brown, E, Smit, and Amanda, Bradley-Stewart
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Male ,0301 basic medicine ,Integrase inhibitor ,HIV Infections ,Drug resistance ,Men who have sex with men ,Cohort Studies ,chemistry.chemical_compound ,0302 clinical medicine ,Transmitted ,Transmitted drug resistance mutations ,Prevalence ,Medicine ,Pharmacology (medical) ,030212 general & internal medicine ,Original Research ,transmitted ,education.field_of_study ,biology ,Health Policy ,virus diseases ,Middle Aged ,Transmitted drug resistance ,3. Good health ,Integrase ,Infectious Diseases ,Anti-Retroviral Agents ,Rilpivirine ,VIRUS ,Female ,transmitted drug resistance mutations ,Life Sciences & Biomedicine ,Mutations ,UK HIV Drug Resistance Database ,Adult ,Efavirenz ,Adolescent ,030106 microbiology ,Population ,Young Adult ,03 medical and health sciences ,transmitted drug resistance ,ANTIRETROVIRAL-NAIVE PERSONS ,Virology ,Drug Resistance, Viral ,Disease Transmission, Infectious ,Humans ,education ,Science & Technology ,drug resistance ,business.industry ,HIV‐1 ,1103 Clinical Sciences ,mutations ,United Kingdom ,Reverse transcriptase ,chemistry ,HIV-1 ,biology.protein ,UPDATE ,business - Abstract
OBJECTIVES Transmission of drug-resistant HIV-1 has decreased in the UK since the early 2000s. This analysis reports recent trends and characteristics of transmitted drug resistance (TDR) in the UK from 2010 to 2013. METHODS Resistance tests conducted in antiretroviral treatment (ART)-naive individuals between 2010 and 2013 were analysed for the presence of transmitted drug resistance mutations (TDRMs), defined as any mutations from a modified 2009 World Health Organization surveillance list, or a modified 2013 International Antiviral Society-USA list for integrase tests. Logistic regression was used to examine associations between demographics and the prevalence of TDRMs. RESULTS TDRMs were observed in 1223 (7.5%) of 16 425 individuals; prevalence declined from 8.1% in 2010 to 6.6% in 2013 (P = 0.02). The prevalence of TDRMs was higher among men who have sex with men (MSM) compared with heterosexual men and women (8.7% versus 6.4%, respectively) with a trend for decreasing TDRMs among MSM (P = 0.008) driven by a reduction in nucleoside reverse transcriptase inhibitor (NRTI)-related mutations. The most frequently detected TDRMs were K103N (2.2%), T215 revertants (1.6%), M41L (0.9%) and L90M (0.7%). Predicted phenotypic resistance to first-line ART was highest to the nonnucleoside reverse transcriptase inhibitors (NNRTIs) rilpivirine and efavirenz (6.2% and 3.4%, respectively) but minimal to NRTIs, including tenofovir, and protease inhibitors (PIs). No major integrase TDRMs were detected among 101 individuals tested while ART-naive. CONCLUSIONS We observed a decrease in TDRMs in recent years. However, this was confined to the MSM population and rates remained stable in those with heterosexually acquired HIV infection. Resistance to currently recommended first-line ART, including integrase inhibitors, remained reassuringly low.
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- 2016
24. SAT0425 NOVEL COMPUTER-ASSISTED METHODOLOGY FOR QUANTITATIVE ASSESSMENT OF MRI TREATMENT RESPONSES TO APREMILAST IN PATIENTS WITH PSORIATIC ARTHRITIS
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E. Sanverdi, M. Hinton, Priscila Nakasato, C. Sabin, Morten Ilum Boesen, R. Hagoug, Paul Bird, Olga Kubassova, and Benoit Guerette
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medicine.medical_specialty ,Tenosynovitis ,medicine.diagnostic_test ,business.industry ,Immunology ,Magnetic resonance imaging ,Wrist ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,Psoriatic arthritis ,medicine.anatomical_structure ,Rheumatology ,Synovitis ,medicine ,Quantitative assessment ,Physical therapy ,Immunology and Allergy ,In patient ,Apremilast ,business ,medicine.drug - Abstract
Background:Response to treatment in psoriatic arthritis (PsA) can be captured using the OMERACT PsA Magnetic Resonance Imaging Score (PsAMRIS). While reliable and valid, PsAMRIS interpretation requires a trained reader to assess inflammatory lesions such as synovitis and flexor tenosynovitis on a discrete scale ranging from 0 to 3, which might not have sufficient sensitivity to capture early and subtle changes in inflammation in small cohorts.Objectives:To propose a novel computer-assisted imaging quantitative methodology to assess early response to treatment on a continuous scale and compare its results with those of PsAMRIS.Methods:Patients with active PsA in the hand and wrist were treated with apremilast 30 mg twice daily after a 5-day titration period. A total of 29 patients underwent MRI scans at baseline and months 3, 6, and 12. Images were scored for synovitis using the PsAMRIS interpreted by an experienced reader and were read in blinded sequences. Images for 13 patients with involvement of the wrist and metacarpophalangeal (MCP) joints and MRI available at baseline, 3 months, and 6 months were further processed using a novel computer-assisted imaging quantitative methodology. Images were scored concurrently, with the reader blinded to the order of visits. An experienced reader pre-defined regions of interest (ROIs) around the wrist, MCP joints (MCP-2 to MCP-5), and flexor and extensor tendons of the fingers and wrist (as applicable) with adjacent blood vessels and possible artifacts excluded from ROIs. From these ROIs, the normalized volume of inflammation (NormI) was calculated in each joint and tendon. This was done by automatically counting the pixels that were enhanced above the intensity level of a muscle. Each enhanced pixel was given a weight corresponding to the degree of enhancement, allowing differentiation of areas of residual inflammation and high perfusion. This method has been validated, tested, and implemented in the CE/FDA510-cleared software package Dynamika (IAG, Image Analysis Group). PsAMRIS responses were compared with those of the computer-assisted imaging quantitative methodology at baseline, 3 months, and 6 months. A heat map of normalized intensities was produced, highlighting areas of perfusion higher than that of healthy muscle. Changes from baseline were tested for significance using at-test. Patients with non-missing data were included in the final statistical analysis.Results:The generated NormI map highlighted a reduction in wrist inflammation activity after 3 and 6 months of treatment with apremilast. In all cases, a downward trend in inflammatory activity in the wrist and MCP joints was observed at 3 months, indicating a reduction following treatment with apremilast (Figures 1 and 2). Similar improvements were observed in tenosynovitis (Figures 1 and 2).Conclusion:In this pilot assessment, apremilast was associated with improvements in synovitis and tenosynovitis over a period of 6 months using PsAMRIS. Assessment of images using NormI, a methodology allowing quantification of inflammatory activity within a joint or tendon, demonstrated the same trends over 6 months. Further studies are planned to determine the sensitivity of this novel computer-assisted imaging quantitative methodology relative to that of PsAMRIS and whether it could be used to provide early indications of treatment response in small cohorts of patients.Disclosure of Interests:Paul Bird Consultant of: AbbVie, Celgene Corporation, Eli Lilly, Janssen, Novartis, Pfizer – advisor, Speakers bureau: AbbVie, Celgene Corporation, Eli Lilly, Janssen, Novartis, Pfizer, Mikael Boesen Consultant of: AbbVie, AstraZeneca, Eli Lilly, Esaote, Glenmark, Novartis, Pfizer, UCB, Paid instructor for: IAG, Image Analysis Group, AbbVie, Eli Lilly, AstraZeneca, esaote, Glenmark, Novartis, Pfizer, UCB (scientific advisor)., Speakers bureau: Eli Lilly, Esaote, Novartis, Pfizer, UCB, Mark Hinton: None declared, Eser Sanverdi Employee of: Image Analysis Group – employment, Romiesa Hagoug Employee of: Image Analysis Group – employment, Christoper Sabin Employee of: Image Analysis Group – employment, Priscila Nakasato Employee of: Amgen Inc. – employment; Celgene Corporation – employment at the time of study conduct, Benoit Guerette Employee of: Amgen Inc. – employment; Celgene Corporation – employment at the time of study conduct, Olga Kubassova Shareholder of: IAG, Image Analysis Group, Consultant of: Novartis, Takeda, Lilly, Employee of: IAG, Image Analysis Group
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- 2020
25. Possible influence of zoonotic parasitic diseases on the immunity system and some forms of cancer
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Marian-Stefan Nicolae, C. Ana Maria, D. Maria Alexandra, C. Sabin, C. Dragos Constantin, and F. Daniela
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Immune system ,business.industry ,Immunology ,medicine ,Cancer ,Bioengineering ,General Medicine ,medicine.disease ,business ,Applied Microbiology and Biotechnology ,Biotechnology - Published
- 2019
26. Response to Comment on 'An excess of massive stars in the local 30 Doradus starburst'
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Jesús Maíz Apellániz, Nevy Markova, Artemio Herrero, Francisco Najarro, Jacco Th. van Loon, D. J. Lennon, Mark Gieles, Frank Tramper, Sergio Simón-Díaz, V. Kalari, Norberto Castro, Joachim Puls, Hugues Sana, Miriam Garcia, J. M. Bestenlehner, C. Sabin-Sanjulian, Robert G. Izzard, Philipp Podsiadlowski, Vincent Hénault-Brunet, Philip Dufton, O.H. Ramírez-Agudelo, Luca Fossati, Chris Evans, W. D. Taylor, Paul A. Crowther, Colin Norman, Fabian Schneider, G. Gräfener, Norbert Langer, Alexander de Koter, Selma E. de Mink, Jorick S. Vink, and Low Energy Astrophysics (API, FNWI)
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0301 basic medicine ,Physics ,Solar mass ,Multidisciplinary ,Initial mass function ,Extraterrestrial Environment ,Astronomy ,FOS: Physical sciences ,Astrophysics ,01 natural sciences ,Astrophysics - Astrophysics of Galaxies ,Time ,03 medical and health sciences ,Stars ,030104 developmental biology ,Stars, Celestial ,Astrophysics - Solar and Stellar Astrophysics ,Astrophysics of Galaxies (astro-ph.GA) ,0103 physical sciences ,010303 astronomy & astrophysics ,Solar and Stellar Astrophysics (astro-ph.SR) - Abstract
Farr and Mandel reanalyse our data, finding initial-mass-function slopes for high mass stars in 30 Doradus that agree with our results. However, their reanalysis appears to underpredict the observed number of massive stars. Their technique results in more precise slopes than in our work, strengthening our conclusion that there is an excess of massive stars above $30\,\mathrm{M}_\odot$ in 30 Doradus., Comment: Authors' version of a response to a technical comment published in Science; 8 pages, 1 figure
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- 2018
27. Prevalence of diagnosed HIV infection among persons with hepatitis C virus infection: England, 2008-2014
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C Sabin, Sema Mandal, Peter Kirwan, Georgina Ireland, S. Lattimore, Valerie Delpech, Sara Croxford, Kholoud Porter, and Ruth Simmons
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Adolescent ,Hepatitis C virus ,030106 microbiology ,HIV Infections ,medicine.disease_cause ,Men who have sex with men ,03 medical and health sciences ,Liver disease ,Young Adult ,0302 clinical medicine ,Internal medicine ,medicine ,Disease Transmission, Infectious ,Prevalence ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,Homosexuality, Male ,business.industry ,Transmission (medicine) ,Coinfection ,Health Policy ,Public health ,virus diseases ,Odds ratio ,Hepatitis C ,Middle Aged ,medicine.disease ,Infectious Diseases ,England ,Female ,business - Abstract
Objectives In persons with hepatitis C virus (HCV) infection, HIV coinfection leads to faster progression to advanced liver disease. The aim of our study was to estimate diagnosed HIV prevalence among people with evidence of current HCV infection (polymerase chain reaction positive) and examine predictors of coinfection. Methods Adults (≥ 15 years old) with a current HCV infection reported to the Public Health England (PHE) sentinel surveillance of blood-borne viruses were linked to the PHE national HIV database using a deterministic methodology. Descriptive and multivariate analyses were conducted. Results Between 2008 and 2014, 5.0% (999/20 088) of adults with a current HCV infection were diagnosed with HIV coinfection. The majority acquired HIV through sex between men (441; 64.9%), followed by injecting drug use (153; 22.5%) and heterosexual contact (84; 12.4%). Of persons who were coinfected, 65.5% had been diagnosed with HIV infection > 6 months before their HCV diagnosis, 41.4% of whom had a negative anti-HCV test between their HIV and HCV diagnoses. In a multivariable model among persons with current HCV infection, an HIV diagnosis was more likely among men [adjusted odds ratio (aOR) 3.29; 95% confidence interval (CI) 2.60-4.16] and persons of black ethnicity (aOR 3.19; 95% CI 1.36-7.46), and less likely among older adults (aOR 0.85 per 10-year increase; 95% CI 0.79-0.92) and persons of Asian ethnicity (aOR 0.59; 95% CI 0.41-0.86). Conclusions Our results indicate that the majority of diagnosed HIV and current HCV coinfections are among men who have sex with men. Safer sex campaigns should include awareness of transmission of HCV among MSM living with HIV.
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- 2018
28. Baleen stable isotope data
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Clive N Trueman, Andrew L Jackson, Katharyn S Chadwick, Ellen J Coombs, Sarah Magozzi, Richard C Sabin & Natalie Cooper
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This dataset contains d13C and d15N stable isotope data from northern hemisphere rorqual whale (Balaenoptera) baleen taken from our collections. This includes data from the baleen of the Hintze Hall blue whale. The data has been used in various research papers. Additional data allow the analyses in these papers to be carried out and mostly encompass environmental datasets or the outputs of various simulation models. **Note that if trying to link these data to analyses in GitHub, an update to this site has changed all "." in column headers to "_". These will need to be changed before the code will work. Apologies.**
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- 2018
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29. What can cetacean stranding records tell us? A study of UK and Irish cetacean diversity over the past 100 years
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Ellen J Coombs, Rob Deaville, Richard C. Sabin, Louise Allan, Mick O’Connell, Simon Berrow, Andrew Brownlow, Mariel Ten Doeschate, Rod Penrose, Ruth Williams, Paul Jepson and Natalie Cooper
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Data from the paper: **What can cetacean stranding records tell us? A study of UK and Irish cetacean diversity over the past 100 years**. Ellen J. Coombs et al. 2019. *Marine Mammal Science*, DOI: [https://doi.org/10.1111/mms.12610](https://doi.org/10.1111/mms.12610). This dataset contains information on cetaceans stranded in the UK and Ireland between 1913 and 2015. It also contains yearly data on various environmental variables believed to influence strandings. The full strandings datasets are available from: * UK (1913 - 1989): NHM Data Portal: [https://doi.org/10.5519/0028204](https://doi.org/10.5519/0028204). * UK (1990 - 2015): CSIP http://data.ukstrandings.org * Irish records (1990 - 2015): Irish Whale and Dolphin group (contact them for access).
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- 2018
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30. Ionic liquid–solid polymer electrolyte blends for supercapacitor applications
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Pramod K. Singh, Xuyuan Chen, and K. C. Sabin
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chemistry.chemical_classification ,Supercapacitor ,Materials science ,Polymers and Plastics ,02 engineering and technology ,General Chemistry ,Polymer ,Electrolyte ,Conductivity ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Electrochemistry ,01 natural sciences ,0104 chemical sciences ,Amorphous solid ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Ionic liquid ,Materials Chemistry ,Ionic conductivity ,Composite material ,0210 nano-technology - Abstract
The electrochemical, structural and photoelectrochemical properties of blend of a low-viscosity IL 1-ethyl 3-methyl imidazolium dicynamide (EMIM DCA, viscosity 17 cP) in poly(vinylidene fluoride-hexafluoropropylene) (PVdF-HFP) are presented in detail. The blending of low-viscous IL provides charge carriers with higher mobility which are significantly observed in ionic conductivity measurement. The incorporation of IL provides more amorphous region within polymer matrix which is known as a beneficial condition for conductivity enhancement and are affirmed by our DSC and XRD measurements. The fabricated supercapacitor with configuration MWCNT/PVdF-HFP +IL/MWCN shows promising results.
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- 2015
31. A tale of two countries: all-cause mortality among people living with HIV and receiving combination antiretroviral therapy in the UK and Canada
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S, Patterson, S, Jose, H, Samji, A, Cescon, E, Ding, J, Zhu, J, Anderson, A N, Burchell, C, Cooper, T, Hill, M, Hull, M B, Klein, M, Loutfy, F, Martin, N, Machouf, Jsg, Montaner, M, Nelson, J, Raboud, S B, Rourke, C, Tsoukas, R S, Hogg, C, Sabin, and Roy, Trevelion
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Adult ,Male ,Canada ,Anti-HIV Agents ,antiretroviral therapy ,HIV ,HIV Infections ,Sexually Transmitted Diseases, Viral ,Middle Aged ,mortality ,United Kingdom ,Cohort Studies ,AIDS ,Observational Studies as Topic ,Risk Factors ,Humans ,Female ,UK ,Original Research - Abstract
Objectives We sought to compare all‐cause mortality of people living with HIV and accessing care in Canada and the UK. Methods Individuals from the Canadian Observational Cohort (CANOC) collaboration and UK Collaborative HIV Cohort (UK CHIC) study who were aged ≥ 18 years, had initiated antiretroviral therapy (ART) for the first time between 2000 and 2012 and who had acquired HIV through sexual transmission were included in the analysis. Cox regression was used to investigate the difference in mortality risk between the two cohort collaborations, accounting for loss to follow‐up as a competing risk. Results A total of 19 960 participants were included in the analysis (CANOC, 4137; UK CHIC, 15 823). CANOC participants were more likely to be older [median age 39 years (interquartile range (IQR): 33, 46 years) vs. 36 years (IQR: 31, 43 years) for UK CHIC participants], to be male (86 vs. 73%, respectively), and to report men who have sex with men (MSM) sexual transmission risk (72 vs. 56%, respectively) (all P < 0.001). Overall, 762 deaths occurred during 98 798 person‐years (PY) of follow‐up, giving a crude mortality rate of 7.7 per 1000 PY [95% confidence interval (CI): 7.1, 8.3 per 1000 PY]. The crude mortality rates were 8.6 (95% CI: 7.4, 10.0) and 7.5 (95% CI: 6.9, 8.1) per 1000 PY among CANOC and UK CHIC study participants, respectively. No statistically significant difference in mortality risk was observed between the cohort collaborations in Cox regression accounting for loss to follow‐up as a competing risk (adjusted hazard ratio 0.86; 95% CI: 0.72–1.03). Conclusions Despite differences in national HIV care provision and treatment guidelines, mortality risk did not differ between CANOC and UK CHIC study participants who acquired HIV through sexual transmission.
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- 2017
32. When to Monitor CD4 Cell Count and HIV RNA to Reduce Mortality and AIDS-Defining Illness in Virologically Suppressed HIV-Positive Persons on Antiretroviral Therapy in High-Income Countries: A Prospective Observational Study
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Caniglia, Ellen C. Sabin, Caroline Robins, James M. Logan, Roger Cain, Lauren E. Abgrall, Sophie Mugavero, Michael J. and Hernandez-Diaz, Sonia Meyer, Laurence Seng, Remonie and Drozd, Daniel R. Seage, III, George R. Bonnet, Fabrice and Dabis, Francois Moore, Richard R. Reiss, Peter van Sighem, Ard Mathews, William C. del Amo, Julia Moreno, Santiago and Deeks, Steven G. Muga, Roberto Boswell, Stephen L. Ferrer, Elena Eron, Joseph J. Napravnik, Sonia Jose, Sophie and Phillips, Andrew Olson, Ashley Justice, Amy C. Tate, Janet P. Bucher, Heiner C. Egger, Matthias Touloumi, Giota and Sterne, Jonathan A. Costagliola, Dominique Saag, Michael and Hernan, Miguel A. Ctr AIDS Res Network Integrated
- Abstract
Objective: To illustrate an approach to compare CD4 cell count and HIV-RNA monitoring strategies in HIV-positive individuals on antiretroviral therapy (ART). Design: Prospective studies of HIV-positive individuals in Europe and the USA in the HIV-CAUSAL Collaboration and The Center for AIDS Research Network of Integrated Clinical Systems. Methods: Antiretroviral-naive individuals who initiated ART and became virologically suppressed within 12 months were followed from the date of suppression. We compared 3 CD4 cell count and HIV-RNA monitoring strategies: once every (1) 3 +/- 1 months, (2) 6 +/- 1 months, and (3) 9-12 +/- 1 months. We used inverseprobability weighted models to compare these strategies with respect to clinical, immunologic, and virologic outcomes. Results: In 39,029 eligible individuals, there were 265 deaths and 690 AIDS-defining illnesses or deaths. Compared with the 3-month strategy, the mortality hazard ratios (95% CIs) were 0.86 (0.42 to 1.78) for the 6 months and 0.82 (0.46 to 1.47) for the 9-12 month strategy. The respective 18-month risk ratios (95% CIs) of virologic failure (RNA >200) were 0.74 (0.46 to 1.19) and 2.35 (1.56 to 3.54) and 18-month mean CD4 differences (95% CIs) were -25.3 (-18.6 to 7.9) and -31.7 (-52.0 to -11.3). The estimates for the 2-year risk of AIDS-defining illness or death were similar across strategies. Conclusions: Our findings suggest that monitoring frequency of virologically suppressed individuals can be decreased from every 3 months to every 6, 9, or 12 months with respect to clinical outcomes. Because effects of different monitoring strategies could take years to materialize, longer follow-up is needed to fully evaluate this question.
- Published
- 2016
33. Spectral Classification and Properties of the O Vz Stars in the Galactic O-Star Spectroscopic Survey (GOSSS)
- Author
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Nidia Morrell, Rodolfo H. Barbá, C. Sabin-Sanjulian, Emilio J. Alfaro, A. Marco, J. R. S. Leão, Julia Ines Arias, Sergio Simón Díaz, Jesús Maíz Apellániz, Ignacio Negueruela, Roberto Claudio Gamen, A. Herrero, Nolan R. Walborn, Alfredo Sota, Universidad de Alicante. Departamento de Física, Ingeniería de Sistemas y Teoría de la Señal, and Astrofísica Estelar (AE)
- Subjects
Ciencias Astronómicas ,Ciencias Físicas ,FOS: Physical sciences ,Astrophysics ,Surveys ,Stellar classification ,01 natural sciences ,fundamental parameters [Stars] ,purl.org/becyt/ford/1 [https] ,surveys ,early-type [Stars] ,Física Aplicada ,0103 physical sciences ,010303 astronomy & astrophysics ,Solar and Stellar Astrophysics (astro-ph.SR) ,O-type star ,Astronomía y Astrofísica ,Physics ,010308 nuclear & particles physics ,Astronomy and Astrophysics ,purl.org/becyt/ford/1.3 [https] ,stars: early-type ,Astronomía ,Stars ,Astrophysics - Solar and Stellar Astrophysics ,Space and Planetary Science ,stars: fundamental parameters ,CIENCIAS NATURALES Y EXACTAS - Abstract
On the basis of the Galactic O Star Spectroscopic Survey (GOSSS), we present a detailed systematic investigation of the O Vz stars. The currently used spectral classification criteria are rediscussed, and the Vz phenomenon is recalibrated through the addition of a quantitative criterion based on the equivalent widths of the He i λ4471, He ii λ4542, and He ii λ4686 spectral lines. The GOSSS O Vz and O V populations resulting from the newly adopted spectral classification criteria are comparatively analyzed. The locations of the O Vz stars are probed, showing a concentration of the most extreme cases toward the youngest star-forming regions. The occurrence of the Vz spectral peculiarity in a solar-metallicity environment, as predicted by the fastwind code, is also investigated, confirming the importance of taking into account several processes for the correct interpretation of the phenomenon., Instituto de Astrofísica de La Plata, Facultad de Ciencias Astronómicas y Geofísicas
- Published
- 2016
34. Non-uptake of highly active antiretroviral therapy among patients with a CD4 count < 350 cells/μL in the UK
- Author
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C Kober, Andrew N. Phillips, Adrian Palfreeman, Jonathan Ainsworth, Jane Anderson, John Walsh, Frank A. Post, Brian Gazzard, Valerie Delpech, RJ Gilson, Loveleen Bansi, Chloe Orkin, David Dunn, Teresa Hill, Clifford Leen, Margaret A. Johnson, Mark Gompels, C Sabin, and Martin Fisher
- Subjects
medicine.medical_specialty ,Proportional hazards model ,business.industry ,Health Policy ,Human immunodeficiency virus (HIV) ,medicine.disease ,medicine.disease_cause ,Antiretroviral therapy ,Infectious Diseases ,Risk groups ,Acquired immunodeficiency syndrome (AIDS) ,Relative hazard ,Internal medicine ,Immunology ,medicine ,Pharmacology (medical) ,Cd4 cell count ,business ,Viral load - Abstract
Objectives Current British HIV Association (BHIVA) guidelines recommend that all patients with a CD4 count
- Published
- 2011
35. Development of a didanosine genotypic resistance interpretation system based on large derivation and validation datasets
- Author
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Lambert, Assoumou, Alessandro, Cozzi-Lepri, Françoise, Brun-Vézinet, Victor, Degruttola, Daniel R, Kuritzkes, Andrew, Phillips, Andrew, Zolopa, Veronica, Miller, Philippe, Flandre, Dominique, Costagliola, and C, Sabin
- Subjects
Adult ,Male ,Oncology ,medicine.medical_specialty ,Genotype ,Anti-HIV Agents ,Immunology ,HIV Infections ,Drug resistance ,Biology ,Interquartile range ,Internal medicine ,Drug Resistance, Viral ,Linear regression ,medicine ,Humans ,Immunology and Allergy ,Derivation ,Didanosine ,Middle Aged ,Viral Load ,Resistance mutation ,Virology ,Censoring (statistics) ,Infectious Diseases ,Mutation ,HIV-1 ,Linear Models ,RNA, Viral ,Female ,Viral load ,Algorithms ,medicine.drug - Abstract
Objective: To assess the genotypic determinants of the virological response to didanosine (ddI) in HIV-infected patients.Methods: The Forum database on ddI was randomly divided into a derivation set (n=1000) and a validation set (n=453). Linear regression models and bootstrap sampling were used to select resistance mutations and to estimate their resistance scores. Linear regression models, accounted for the censoring of viral load measurements due to assay lower limits, of the week 8 reduction in viral load from baseline were adjusted for baseline viral load, the exact number of weeks between baseline and the week 8 viral load measurements, and the Stanford genotypic sensitivity score.Results: The ddI resistance mutations and their resistance scores based on the derivation set were as follows: M41L (score of 14), T69D (24), D123S (40), T139M (54), I180V (53), M184V (-12), V1891 (55), Q207K (37), L210W (25), and T215Y (eight). The total score is obtained by adding the individual scores. Viruses with scores of 19 or less, 20-59, and 60 or more are considered sensitive, intermediate, and resistant, respectively. In the validation set, respectively, 58.7, 36.9, and 4.4% of viruses were predicted to be sensitive, intermediate, and resistant to ddI. The observed viral load reductions at week 8 were, respectively, 1.51 log(10)copies/ml [interquartile range (IQR) 1.26-1.76] (P=0.0001 versus resistant), 1.11 (0.94-1.30) (P=0.0077 versus sensitive), and 0.46 (0.32-0.74) (P=0.0079 versus intermediate).Conclusion: We developed a genotypic resistance score for didanosine including four mutations never previously used. (C) 2010 Wolters Kluwer Health vertical bar Lippincott Williams & Wilkins
- Published
- 2010
36. Can Targeted HCV Direct-Acting Antiviral Treatment as Prevention Reverse the HCV Epidemic Amongst Men who Have Sex with Men in the UK - Epidemiological and Modelling Insights
- Author
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Yusef Azad, Thomas C S Martin, Murad Ruf, Natasha K. Martin, C Sabin, Valerie Delpech, Peter Vickerman, Graham S Cooke, A Thornton, Huw Price, Matthew Hickman, Mark T. Nelson, and E. Thomson
- Subjects
medicine.medical_specialty ,Hepatology ,business.industry ,Internal medicine ,Epidemiology ,medicine ,Antiviral treatment ,business ,Virology ,Direct acting ,Men who have sex with men - Published
- 2016
37. Selected Topics from the 13th International AIDS Conference, July 9–14, 2000 Durban, South Africa
- Author
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T. R. Sterling, Jeffrey S. A. Stringer, M. Youle, C. Sabin, and R. E. Chaisson
- Subjects
Infectious Diseases ,Acquired immunodeficiency syndrome (AIDS) ,business.industry ,Medicine ,Library science ,Pharmacology (medical) ,business ,medicine.disease - Published
- 2000
38. Review of life expectancy in people with HIV in settings with optimal ART access: what we know and what we don't
- Author
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C Sabin
- Subjects
Cart ,Gerontology ,Pension ,education.field_of_study ,Government ,business.industry ,Population ,Ethnic group ,Public Health, Environmental and Occupational Health ,Oral Abstract – O131 ,Years of potential life lost ,Infectious Diseases ,Health care ,Life expectancy ,Medicine ,business ,education - Abstract
Life expectancy (LE) is an important indicator of health used widely by government and healthcare agencies to monitor trends over time and to determine resource allocation, as well as by insurance companies and pension providers. LE of the HIV-positive population has increased dramatically since the introduction of combination antiretroviral therapy (cART); indeed, it is now believed that LE may be similar to that of the general population in some subgroups. There are, however, specific subgroups in which LE remains substantially impaired. The impact of HIV and of cART on mortality may be expressed in several ways. LE itself provides an estimate of the average additional number of years that an individual would be expected to live beyond a particular age. However, the detrimental impact of HIV may also be described in terms of the number of years of life lost or the gains in LE if HIV were to be eliminated as a cause of morbidity in the population. My presentation will start with a description of the different methods that researchers have used to describe the mortality outcomes of those with HIV, and the impact of cART on these. I will then consider how LE in the HIV-positive population has changed over time and will describe the impact of demographic factors (e.g. gender, age, ethnic group) on LE. To investigate the circumstances under which LE may return to normal levels, I will also consider the potential impact of timely diagnosis and linkage into care, continued engagement with care, optimal initiation of cART and maintenance of viral suppression on LE. Finally, I will discuss some of the limitations of the approaches used to estimate LE, with particular emphasis on the confounding effects of lifestyle and behavioural factors when making any comparison with LE in the general population.
- Published
- 2013
39. Assessment of patient complexity using routinely collected data: The UK CHIC study
- Author
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C Sabin and Delpech
- Subjects
Hepatitis ,business.industry ,Public Health, Environmental and Occupational Health ,Subject (documents) ,medicine.disease ,Bioinformatics ,Confidence interval ,symbols.namesake ,Infectious Diseases ,Acquired immunodeficiency syndrome (AIDS) ,Interquartile range ,symbols ,Medicine ,Poisson regression ,business ,Viral load ,Demography ,Event (probability theory) - Abstract
We identified predictors of clinical complexity based on data collected in the UK CHIC Study. All subjects under established care (>1 year) from 2000-2010 were included. Each subject’s follow-up (1 year after study entry to last clinic visit, death or 31/12/2010) was stratified into a series of 6-monthly periods and his/her status was assessed at the start of each. Using Poisson regression (with generalised estimating equations to allow for multiple entries per subject), we studied associations between demographic/clinical factors, CD4 count/percent, viral load (VL), calendar year and measures of prior/current antiretroviral (ART) use, and the development of a new AIDS event or death during each period. A complexity score was derived from the coefficients of the final model; subjects were categorised into ten equally sized groups based on the score, and event rates were calculated for each group. The 31,338 eligible subjects had a median (interquartile range) age of 36 (10, 42) years at baseline. Ethnicity was white (55%), black African (27%), black other (5%), other (9%) and unknown (4%). Mode of acquisition was sex between men (52%), heterosexual sex (37%), other (5%) and unknown (5%). Subjects contributed a total of 377,284 periods of follow-up (181,170 person-years [PY]) of which 5796 included a clinical event (rate/1000 PY: 3.20 [95% confidence interval 3.12, 3.28], 4322 AIDS events, 1534 deaths). As an active AIDS-defining event in the past 6 months was the dominant predictor of a new clinical event (relative rate 41.55), subjects with an active event were excluded from further analysis. Risk factors for a clinical event in patients without an active AIDS event (Table 1) were earlier calendar year, non-white ethnicity, older age, lower CD4 count, >80 CD4 cell drop from previous visit, being off ART or on ART with a VL >10,000 copies/ml. Hepatitis co-infection and previous experience of immune suppression were associated with lower clinical risk. A score based on this model discriminated reasonably well between subjects who did/did not develop an endpoint over the next 6 months (approximate C-statistic: 0.72), with event rates increasing from 0.49/100 PY in the lowest score group to 7.16/100 PY in the highest. A score based on clinical markers may provide a means to identify those who will experience clinical progression over the next 6 months, allowing this group to be targeted for closer monitoring and funds for HIV care to be distributed appropriately. (Published: 11 November 2012) Citation: Abstracts of the Eleventh International Congress on Drug Therapy in HIV Infection Sabin C and Delpech V. Journal of the International AIDS Society 2012, 15 (Suppl 4):18133 http://www.jiasociety.org/index.php/jias/article/view/18133 | http://dx.doi.org/10.7448/IAS.15.6.18133
- Published
- 2012
40. Simultaneous measurement of urinary albumin and total protein may facilitate decision-making in HIV-infected patients with proteinuria
- Author
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A, Samarawickrama, M, Cai, E R, Smith, K, Nambiar, C, Sabin, M, Fisher, Y, Gilleece, and S G, Holt
- Subjects
Male ,Acquired Immunodeficiency Syndrome ,Decision Making ,Kidney Glomerulus ,Middle Aged ,Proteinuria ,Kidney Tubules ,England ,Predictive Value of Tests ,Creatinine ,Albuminuria ,Humans ,Mass Screening ,Female ,Kidney Diseases ,Biomarkers ,Retrospective Studies - Abstract
We recently showed that a urine albumin/total protein ratio (uAPR) 0.4 identifies tubular pathology in proteinuric patients. In tubular disorders, proteinuria is usually of low molecular weight and contains relatively little albumin. We tested the hypothesis that uAPR is useful in identifying tubular pathology related to antiretroviral use in HIV-infected patients.We retrospectively identified urine protein/creatinine ratios (uPCRs) in HIV-infected patients. A subset of samples had uPCR and urine albumin/creatinie ratio (uACR) measured simultaneously. We classified proteinuric patients (uPCR 30 mg/mmol) into two groups: those with predominantly 'tubular' proteinuria (TP) (uAPR 0.4) and those with predominantly 'glomerular' proteinuria (GP) (uAPR ≥ 0.4).A total of 618 of 5244 samples from 1378 patients had uPCR ≥ 30 mg/mmol. uAPRs were available in 144 patients: 46 patients (32%) had TP and 21 (15%) GP; the remainder had uPCR 30 mg/mmol. The TP group had a higher fractional excretion of phosphate compared with the GP group (mean 27% vs. 16%, respectively; P0.01). Patients with TP were more likely to be on tenofovir and/or a boosted protease inhibitor compared with those with GP. In 18 patients with heavy proteinuria (uPCR 100 mg/mmol), a renal assessment was made; eight had a kidney biopsy. In all cases, the uAPR results correlated with the nephrological diagnosis.In HIV-infected patients, measuring uAPR may help to identify patients in whom a renal biopsy is indicated, and those in whom tubular dysfunction might be an important cause of proteinuria and which may be related to antiretroviral toxicity. We suggest that this would be useful as a routine screening procedure in patients with proteinuria.
- Published
- 2012
41. British HIV Association guidelines for the routine investigation and monitoring of adult HIV-1-infected individuals 2011
- Author
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D, Asboe, C, Aitken, M, Boffito, C, Booth, P, Cane, A, Fakoya, A M, Geretti, P, Kelleher, N, Mackie, D, Muir, G, Murphy, C, Orkin, F, Post, G, Rooney, C, Sabin, L, Sherr, E, Smit, W, Tong, A, Ustianowski, M, Valappil, J, Walsh, M, Williams, D, Yirrell, and David, Yirrell
- Subjects
Adult ,AIDS-Related Opportunistic Infections ,Anti-HIV Agents ,Age Factors ,HIV Infections ,Middle Aged ,Viral Load ,Hematologic Diseases ,United Kingdom ,Antiretroviral Therapy, Highly Active ,Drug Resistance, Viral ,Practice Guidelines as Topic ,HIV-1 ,Humans ,Needle Sharing ,Drug Monitoring ,Biomarkers - Published
- 2011
42. Rates of cardiovascular disease following smoking cessation in patients with HIV infection: results from the D:A:D study(*)
- Author
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K, Petoumenos, S, Worm, P, Reiss, S, de Wit, A, d'Arminio Monforte, C, Sabin, N, Friis-Møller, R, Weber, P, Mercie, C, Pradier, W, El-Sadr, O, Kirk, J, Lundgren, and Mg, Law
- Subjects
Adult ,Male ,Incidence ,Smoking ,Argentina ,HIV Infections ,Middle Aged ,United States ,Article ,CD4 Lymphocyte Count ,Cohort Studies ,Europe ,Cardiovascular Diseases ,Risk Factors ,Humans ,Female ,Smoking Cessation ,Prospective Studies - Abstract
The aim of the study was to estimate the rates of cardiovascular disease (CVD) events after stopping smoking in patients with HIV infection.Patients who reported smoking status and no previous CVD prior to enrolment in the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study were included in this study. Smoking status is collected at each visit as current smoker (yes/no) and ever smoker (yes/no). Time since stopping smoking was calculated for persons who had reported current smoking during follow-up and no current smoking subsequently. Endpoints were: myocardial infarction (MI); coronary heart disease (CHD: MI plus invasive coronary artery procedure or death from other CHD); CVD (CHD plus carotid artery endarterectomy or stroke); and all-cause mortality. Event rates were calculated for never, previous and current smokers, and smokers who stopped during follow-up. Incidence rate ratios (IRRs) were determined using Poisson regression adjusted for age, sex, cohort, calendar year, family history of CVD, diabetes, lipids, blood pressure and antiretroviral treatment.A total of 27 136 patients had smoking status reported, with totals of 432, 600, 746 and 1902 MI, CHD, CVD and mortality events, respectively. The adjusted IRR of CVD in patients who stopped smoking during follow-up decreased from 2.32 within the first year of stopping to 1.49 after3 years compared with those who never smoked. Similar trends were observed for the MI and CHD endpoints. Reductions in risk were less pronounced for all-cause mortality.The risk of CVD events in HIV-positive patients decreased with increasing time since stopping smoking. Smoking cessation efforts should be a priority in the management of HIV-positive patients.
- Published
- 2011
43. The VLT-FLAMES Tarantula Survey. I. Introduction and observational overview
- Author
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S. E. de Mink, J. Th. van Loon, G. Graefener, M. A. Campbell, E. Doran, T. Bagnoli, Alceste Z. Bonanos, A. Herrero, Nevena Markova, J. M. Bestenlehner, Paul A. Crowther, Hugues Sana, Vincent Hénault-Brunet, P. R. Dunstall, J. S. Clark, V. E. Stroud, Nolan R. Walborn, Matteo Cantiello, Miriam Garcia, D. J. Lennon, Ines Brott, W. D. Taylor, Sergio Simón-Díaz, Nate Bastian, Edgardo Costa, K. Friedrich, I. D. Howarth, Chris Evans, Philip Dufton, J. Maíz Apellániz, Robert G. Izzard, C. Sabin-Sanjulian, Stephen J. Smartt, A. de Koter, Francisco Najarro, O. H. Ramirez, Mark Gieles, J. Puls, Jorick S. Vink, Eli Bressert, Norbert Langer, Giovanni Carraro, and Low Energy Astrophysics (API, FNWI)
- Subjects
Cosmology and Nongalactic Astrophysics (astro-ph.CO) ,010504 meteorology & atmospheric sciences ,Young stellar object ,fundamental parameters [stars] ,FOS: Physical sciences ,Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Stellar classification ,spectroscopic [binaries] ,01 natural sciences ,early-type [stars] ,individual: 30 Doradus [open clusters and associations] ,0103 physical sciences ,Astrophysics::Solar and Stellar Astrophysics ,Large Magellanic Cloud ,010303 astronomy & astrophysics ,Solar and Stellar Astrophysics (astro-ph.SR) ,Astrophysics::Galaxy Astrophysics ,0105 earth and related environmental sciences ,Physics ,Spectral properties ,Astronomy and Astrophysics ,Wolf-Rayet [stars] ,Photometry (astronomy) ,Stars ,Astrophysics - Solar and Stellar Astrophysics ,Space and Planetary Science ,Observational study ,Astrophysics::Earth and Planetary Astrophysics ,Data reduction ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
The VLT-FLAMES Tarantula Survey (VFTS) is an ESO Large Programme that has obtained multi-epoch optical spectroscopy of over 800 massive stars in the 30 Doradus region of the Large Magellanic Cloud (LMC). Here we introduce our scientific motivations and give an overview of the survey targets, including optical and near-infrared photometry and comprehensive details of the data reduction. One of the principal objectives was to detect massive binary systems via variations in their radial velocities, thus shaping the multi-epoch observing strategy. Spectral classifications are given for the massive emission-line stars observed by the survey, including the discovery of a new Wolf-Rayet star (VFTS 682, classified as WN5h), 2' to the northeast of R136. To illustrate the diversity of objects encompassed by the survey, we investigate the spectral properties of sixteen targets identified by Gruendl & Chu from Spitzer photometry as candidate young stellar objects or stars with notable mid-infrared excesses. Detailed spectral classification and quantitative analysis of the O- and B-type stars in the VFTS sample, paying particular attention to the effects of rotational mixing and binarity, will be presented in a series of future articles to address fundamental questions in both stellar and cluster evolution., Accepted by A&A, 52 pages (main body: 19 pages, supplementary tables: 33 pages), v3: two classifications updated to match a parallel paper
- Published
- 2011
44. Massive OB stars at varying Z
- Author
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Sergio Simón-Díaz, Miriam Garcia, I. Camacho, Norberto Castro, C. Sabin-Sanjulian, and A. Herrero
- Subjects
Physics ,Stars ,Space and Planetary Science ,Local Group ,Astronomy and Astrophysics ,Astrophysics ,Supergiant - Abstract
Massive stars play a key role in environments with very different metallicities. To interpret the role of massive stars in these systems we have to know their properties at different metallicities. The Local Group offers an excellent laboratory to this aim.
- Published
- 2014
45. Responses to highly active antiretroviral therapy and clinical events in patients with a low CD4 cell count: late presenters vs. late starters
- Author
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L, Waters, M, Fisher, J, Anderson, C, Wood, V, Delpech, T, Hill, J, Walsh, C, Orkin, L, Bansi, M, Gompels, A, Phillips, M, Johnson, R, Gilson, P, Easterbrook, C, Leen, K, Porter, B, Gazzard, C, Sabin, and John, Walsh
- Subjects
Adult ,Male ,Treatment Outcome ,Risk Factors ,Antiretroviral Therapy, Highly Active ,HIV-1 ,Humans ,RNA, Viral ,Female ,HIV Infections ,Longitudinal Studies ,Viral Load ,CD4 Lymphocyte Count - Abstract
We investigated whether adverse responses to highly active antiretroviral therapy (HAART) associated with late HIV presentation are secondary to low CD4 cell count per se or other confounding factors.A longitudinal analysis of the UK Collaborative HIV Cohort (CHIC) Study of individuals starting HAART in 1998-2007 was carried out, comparing late presenters (presenting/starting HAART at a CD4 count200 cells/μL) with late starters (presenting at a CD4 count350 cells/μL; starting HAART at a CD4 count200 cells/μL), using 'ideal starters' (presenting at a CD4 count350 cells/μL; starting HAART at a CD4 count of 200-350 cells/μL) as a comparator. Virological, immunological and clinical (new AIDS event/death) outcomes at 48 and 96 weeks were analysed, with the analysis being limited to those remaining on HAART for3 months.A total of 4978 of 9095 individuals starting first-line HAART with HIV RNA500 HIV-1 RNA copies/mL were included in the analysis: 2741 late presenters, 947 late starters and 1290 ideal starters. Late presenters were more commonly female, heterosexual and Black African. Most started nonnucleoside reverse transcriptase inhibitors (NNRTIs); 48-week virological suppression was similar in late presenters and starters (and marginally lower than in ideal starters); by week 96 differences were reduced and nonsignificant. The median CD4 cell count increase in late presenters was significantly lower than that in late starters (weeks 48 and 96). During year 1, new clinical events were more frequent for late presenters [odds ratio (OR) 2.04; 95% confidence interval (CI) 1.19-3.51; P=0.01]; by year 2, event rates were similar in all groups.Amongst patients who initiate, and remain on, HAART, late presentation is associated with lower rates of virological suppression, blunted CD4 cell count increases and more clinical events compared with late starters in year 1, but similar clinical and immunological outcomes by year 2 to those of both late and ideal starters. Differences between late presenters and late starters suggest that factors other than CD4 cell count alone may be driving adverse treatment outcomes in late-presenting individuals.
- Published
- 2010
46. Late presentation of HIV infection: a consensus definition
- Author
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A, Antinori, T, Coenen, D, Costagiola, N, Dedes, M, Ellefson, J, Gatell, E, Girardi, M, Johnson, O, Kirk, J, Lundgren, A, Mocroft, A, D'Arminio Monforte, A, Phillips, D, Raben, J K, Rockstroh, C, Sabin, A, Sönnerborg, and F, De Wolf
- Subjects
Europe ,Consensus ,Delayed Diagnosis ,Time Factors ,Health Policy ,Humans ,HIV Infections ,Patient Acceptance of Health Care ,CD4 Lymphocyte Count - Abstract
Across Europe, almost a third of individuals infected with HIV do not enter health care until late in the course of their infection. Surveillance to identify the extent to which late presentation occurs remains inadequate across Europe and is further complicated by the lack of a common clinical definition of late presentation. The objective of this article is to present a consensus definition of late presentation of HIV infection.Over the past year, two initiatives have moved towards a harmonized definition. In spring 2009, they joined efforts to identify a common definition of what is meant by a 'late-presenting' patient.Two definitions were agreed upon, as follows. Late presentation: persons presenting for care with a CD4 count below 350 cells/μL or presenting with an AIDS-defining event, regardless of the CD4 cell count. Presentation with advanced HIV disease: persons presenting for care with a CD4 count below 200 cells/μL or presenting with an AIDS-defining event, regardless of the CD4 cell count.The European Late Presenter Consensus working group believe it would be beneficial if all national health agencies, institutions, and researchers were able to implement this definition (either on its own or alongside their own preferred definition) when reporting surveillance or research data relating to late presentation of HIV infection.
- Published
- 2010
47. Relative contributions of baseline patient characteristics and the choice of statistical methods to the variability of genotypic resistance scores: the example of didanosine
- Author
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Lambert, Assoumou, Allal, Houssaïni, Dominique, Costagliola, Philippe, Flandre, and C, Sabin
- Subjects
Microbiology (medical) ,Adult ,Male ,Canada ,Genotype ,Anti-HIV Agents ,Population ,Patient characteristics ,Biology ,Drug Resistance, Viral ,medicine ,Humans ,Pharmacology (medical) ,education ,Baseline (configuration management) ,Didanosine ,Pharmacology ,Genetics ,education.field_of_study ,Middle Aged ,Viral Load ,United States ,Data set ,Infectious Diseases ,Treatment Outcome ,Italy ,Genotypic resistance ,HIV-1 ,RNA, Viral ,Female ,France ,Viral load ,medicine.drug ,Demography - Abstract
Background Our aim was to investigate the respective role of statistical methodology and patients' baseline characteristics in the selection of mutations included in genotypic resistance scores. Methods As an example, the FORUM database on didanosine including 1453 patients was used. We split this population into four samples based on countries of enrolment (France n = 474, Italy n = 440, USA/Canada n = 219, others n = 320). We used both a continuous outcome measure (the viral load reduction at week 8) and a binary outcome measure (viral load decline at week 8 or =0.6 log(10)) and both parametric and non-parametric methods for each outcome. Results Overall, 61 distinct mutations were selected by at least one method in at least one data set. The variability due to baseline characteristics varies from 79% to 88%, i.e. for a given method applied to the four data sets >80% of the mutations are selected only once. The variability induced by the methodology varies from 49% to 56%, i.e. for a given data set approximately 50% of the mutations are selected by at least two methods. Conclusions Baseline patient characteristics contribute more than the choice of statistical method to the variability of the mutations to be included in the genotypic resistance scores.
- Published
- 2010
48. British HIV Association guidelines for the management of coinfection with HIV-1 and hepatitis B or C virus 2010
- Author
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G, Brook, J, Main, M, Nelson, S, Bhagani, E, Wilkins, C, Leen, M, Fisher, Y, Gilleece, R, Gilson, A, Freedman, R, Kulasegaram, K, Agarwal, C, Sabin, C, Deacon-Adams, and Craig, Deacon-Adams
- Subjects
Adult ,Liver Cirrhosis ,Male ,Carcinoma, Hepatocellular ,Evidence-Based Medicine ,Liver Neoplasms ,Immunotherapy, Active ,HIV Infections ,Hepatitis C, Chronic ,Antiviral Agents ,Hepatitis D ,Liver Transplantation ,Hepatitis B, Chronic ,Antiretroviral Therapy, Highly Active ,Hepatitis Viruses ,Humans ,Female ,Child - Published
- 2010
49. The prevalence of hepatitis C virus (HCV) infection in HIV-positive individuals in the UK - trends in HCV testing and the impact of HCV on HIV treatment outcomes
- Author
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J, Turner, L, Bansi, R, Gilson, B, Gazzard, J, Walsh, D, Pillay, C, Orkin, A, Phillips, P, Easterbrook, M, Johnson, K, Porter, A, Schwenk, T, Hill, C, Leen, J, Anderson, M, Fisher, and C, Sabin
- Subjects
Adult ,Male ,HIV ,HIV Infections ,Hepacivirus ,Hepatitis C Antibodies ,Hepatitis C, Chronic ,United Kingdom ,Cohort Studies ,Logistic Models ,Seroepidemiologic Studies ,Antiretroviral Therapy, Highly Active ,Humans ,Female ,Proportional Hazards Models - Abstract
We examined the prevalence of hepatitis C virus (HCV) infection among HIV-positive individuals in the UK, trends in HCV testing and the impact of HCV on HIV treatment outcomes. Trends over time in HCV prevalence were calculated using each patient's most recent HCV status at the end of each calendar year. Logistic regression was used to identify factors associated with having a HCV antibody test, and Cox regression was used to determine whether HCV status was associated with the time to experiencing an immunological response to highly active antiretroviral treatment (HAART), time to virological response and viral rebound. Of the 31,765 HIV-positive individuals seen for care between January 1996 and September 2007, 20,365 (64.1%) individuals were tested for HCV, and 1807 (8.9%) had detectable HCV antibody. The proportion of patients in follow-up ever tested for HCV increased over time, from 782/8505 (9.2%) in 1996 to 14,280/17,872 (79.9%) in 2007. Nine thousand six hundred and sixty-nine individuals started HAART for the first time in or after January 2000, of whom, 396 (4.1%) were HCV positive. Presence of HCV infection did not affect initial virological response, virological rebound or immunological response. The cumulative prevalence of HCV in the UK CHIC Study is 8.9%. Despite UK guidelines, over 20% of HIV-positive individuals have not had their HCV status determined by 2007. HCV infection had no impact on HIV virological outcomes or immunological response to HIV treatment. The long-term impact on morbidity and mortality remain to be determined.
- Published
- 2009
50. The activation strain tensor: Nonhydrostatic stress effects on crystal-growth kinetics
- Author
-
Guo-Quan Lu, Michael J. Aziz, and Paul C. Sabin
- Subjects
Materials science ,Stress effects ,Semiconductor materials ,Kinetics ,Physical chemistry ,Recrystallization (metallurgy) ,Infinitesimal strain theory ,Thermodynamics ,Crystal growth - Published
- 1991
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