15 results on '"Buyuk M"'
Search Results
2. Lymph Node Retrieval Following Neoadjuvant Short Course Radiotherapy in Patients with Rectal Cancer
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Karaman, S., primary, Dagoglu, R.N., additional, Kaval, G., additional, Buyuk, M., additional, Yanar, H., additional, Keskin, M., additional, Gulluoglu, M., additional, Ertekin, C., additional, and Oral, E.N., additional
- Published
- 2019
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3. Can Neoadjuvant Rectal Cancer (NAR) Score As A Survival Predictor after Short Course Radiotherapy?
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Karaman, S., primary, Dagoglu, R.N., additional, Kaval, G., additional, Buyuk, M., additional, Yanar, H., additional, Keskin, M., additional, Vatansever, S., additional, Karabulut, S., additional, Gulluoglu, M., additional, Kizir, A., additional, and Oral, E.N., additional
- Published
- 2019
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4. Capacitor current feedback active damping for Shunt Active Power Filter with output LLCL filter
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Buyuk, M., Inci, M., Tan, A., Tumay, M., and Çukurova Üniversitesi
- Abstract
10th International Conference on Electrical and Electronics Engineering, ELECO 2017 --29 November 2017 through 2 December 2017 -- -- A high-order LLCL has excellent attenuation performance of ripple harmonics generated by VSI. The LLCL filter is especially effective at switching frequency to mitigate the switching ripple harmonics. However, like the other high-order filters, LLCL filter has resonance problem, which must be damped to have stable system. In literature, passive damping and active damping methods are proposed for grid-connected VSI. However, the active damping techniques have not been considered for SAPF with LLCL filter yet. Thus, in this paper, LLCL filter for Shunt Active Power Filter with Active Damping method is proposed and analyzed to suppress the resonance of LLCL filter and stabilize the control of SAPF. © 2017 EMO (Turkish Chamber of Electrical Enginners).
- Published
- 2018
5. Genetic analyses of some central anatolian domestic duck populations with inter simple sequence repeat (ISSR): A preliminary study
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Tunca R.I., Taskin A., Buyuk M., and Kırşehir Ahi Evran Üniversitesi, Ziraat Fakültesi, Zootekni Bölümü
- Subjects
Duck population ,Genetic distance ,ISSR primers - Abstract
The aim of this study is to investigate the genetic structure of some domestic duck populations from Kirsehir and Yozgat provinces of the Central Anatolia region of Turkey. Blood samples were obtained from the venae cutenea ulnaris of 76 ducks from four different locations. Eleven ISSR primers produced 73 reproducible and bright bands. The number of polymorphic loci was 72 and the percentage of polymorphic loci was 98.6%. Gene diversity (HT) in total population and magnitude of differentiation among populations (GST) were 0.198 and 0.183, respectively. The genetic distances between regions under investigation were found among 0.0157 and 0.0991. Analysis of molecular variance (AMOVA) reflected that 83% of within variation and 17% among population variation. First three given values of principle coordinate analysis explained 69.8% of total variation as 45.6, 13.8 and 10.4%, respectively. The dendrogram showed two main branches: one contains Kirsehir (L1, L2, L3), the other includes Yozgat region (L4). Shannon's Information index (I) value was 0. 331. The gene flow (Nm) among populations was analyzed and Nm value was estimated as 2.23 with the low level of differentiation among populations. The results indicated that genetic variations of some Central Anatolian domestic duck populations are determined using ISSR marker and might provide information for future breeding strategies. Copyright 2015 Zoological Society of Pakistan.
- Published
- 2015
6. Low velocity drop weight impact behaviour of Al2O3-Ni-ZrO2 and Al2O3-Ni-Cr2O3 ceramic composites
- Author
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Kafkaslıoğlu Yıldız Betül, Büyük Murat, and Tür Yahya Kemal
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alumina ,composites ,hardness ,microstructure ,drop weight ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
Particulate Al2O3 matrix nanocomposites containing 1 vol.%Ni were prepared by the heterogeneous precipitation method and the addition of 5 vol.% ZrO2 (ANZ) or 1 vol.% Cr2O3 (ANC). The prepared samples were subjected to the low energy drop weight impact tests to compare the behaviour of the composites under low energy impact and to investigate the damage mechanisms. The pure Al2O3, Al2O3/Ni, Al2O3/ZrO2 and Al2O3/Cr2O3 compositions with the same additive ratios were also produced to make the comparison systematically. Also, the Vickers hardness measurements were carried out and a significant increase in hardness was attained for both ANZ and ANC composites. The average hardness value around 24.8±1.0GPa was measured for the ANZ and ANC composites which means ~15% improvement compared to the pure Al2O3. Between all the compositions, the maximum force (Fmax) value was obtained for the ANZ (for 12 J impact energy level Fmax = 26617N) according to the low energy drop weight impact test results. Tensile radial crack network formation, cone formation, fracture and crushing of the cone structure were observed as damage mechanisms for all compositions. The volume of conical frustum structure was evaluated for each composition and the effect of microstructure on possible ballistic performance was also discussed.
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- 2021
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7. Automated design of threats and shields under hypervelocity impacts by using successive optimization methodology
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Buyuk, M., primary, Kurtaran, H., additional, Marzougui, D., additional, and Kan, C.D., additional
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- 2008
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8. MVT controlled voltage restorer for fault-ride through capability
- Author
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Inci M., Buyuk M., Tan A., Bayindir K.C., Tumay M., and Çukurova Üniversitesi
- Abstract
10th International Conference on Electrical and Electronics Engineering, ELECO 2017 --29 November 2017 through 2 December 2017 -- -- Voltage dips are the most harmful disturbances which may affect the voltage stability of wind turbines. In these voltage dip conditions, stator/rotor currents and electrical torque increase to fairly high values with failing of voltage stability. In order to provide voltage stability after the faults of voltage dips, the faults must be compensated fast and accurately. The main contribution iin this study is that missing voltage technique (MVT) based controller method is tested in dynamic voltage restorer (DVR) to mprove fault ride through (FRT) capability in grid connected wind systems. The proposed method controlled DVR is performed for symmetrical and asymmetrical faults in grid connected wind energy systems by using PSCAD/EMDTC power system simulator program. The case studies demonstrate the superior and effective compensation results. © 2017 EMO (Turkish Chamber of Electrical Enginners).
9. Comparison of Fibroscan, Shear Wave Elastography, and Shear Wave Dispersion Measurements in Evaluating Fibrosis and Necroinflammation in Patients Who Underwent Liver Biopsy.
- Author
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Seyrek S, Ayyildiz H, Bulakci M, Salmaslioglu A, Seyrek F, Gultekin B, Cavus B, Berker N, Buyuk M, and Yuce S
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- Humans, Liver Cirrhosis pathology, Biopsy, Liver diagnostic imaging, Liver pathology, Elasticity Imaging Techniques methods, Liver Diseases pathology
- Abstract
Objective: Our aim was to predict these stages of hepatic fibrosis and necroinflammation using measurements from two-dimensional shear wave elastography (2D-SWE), transient elastography (Fibroscan, TE), and shear wave dispersion (SWD)., Materials and Methods: In this prospectively designed study, chronic liver patients with nonspecific etiology whose biopsy was performed for up to 1 week were included. Two-dimensional SWE, SWD, and TE measurements were performed. The METAVIR and F-ISHAK classification was used for histopathological evaluation., Results: Two-dimensional SWE and TE were considered significant for detecting hepatic fibrosis. In distinguishing ≥F2, for 2D-SWE, area under the receiver operating characteristics (AUROC) was 0.86 (confidence interval [CI], 0.75-0.96) for the cutoff value of 8.05 kPa ( P = 0.003); for TE, AUROC was 0.79 (CI, 0.65-0.94) for the cutoff value of 10.4 kPa ( P < 0.001). No significance was found for TE in distinguishing ≥F3 ( P = 0.132). However, for 2D-SWE, a cutoff value of 10.45 kPa ( P < 0.001), with AUROC = 0.87 (CI, 0.78-0.97) was determined for ≥F3. Shear wave dispersion was able to determine the presence of necroinflammation ( P = 0.016) and a cutoff value of 15.25 (meter/second)/kiloHertz ([m/s]/kHz) ( P = 0.006) and AUROC of 0.71 (CI, 0.57-0.85) were calculated for distinguishing ≥A2. In addition, a cutoff value of 17.25 (m/s)/kHz ( P = 0.023) and AUROC = 0.72 (CI, 0.51-0.93) were found to detect severe necroinflammation. The cutoff value for SWD was 15.25 (m/s)/kHz ( P = 0.013) for detecting ≥A2 in the reversible stage of fibrosis (F0, F1, and F2), and AUROC = 0.72 (CI, 0.56-0.88)., Conclusions: Two-dimensional SWE and TE measurements were significant in detecting the irreversible stage and the stage that should be treated in hepatic fibrosis noninvasively. Shear wave dispersion measurements were significant in detecting necroinflammation noninvasively., Competing Interests: The authors declare no conflict of interest., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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10. Evaluation of Neoadjuvant Chemoradiotherapy Response in Rectal Cancer Using MR Images and Deep Learning Neural Networks.
- Author
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Cingoz E, Ertas G, Kaval G, Azamat S, Karaman S, Kulle CB, Berker N, Cingöz M, Dagoglu Sakin N, Comert RG, Buyuk M, and Kartal MGD
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- Humans, Male, Female, Middle Aged, Retrospective Studies, Aged, Adult, Chemoradiotherapy methods, Treatment Outcome, Rectal Neoplasms therapy, Rectal Neoplasms diagnostic imaging, Deep Learning, Magnetic Resonance Imaging methods, Neoadjuvant Therapy methods, Neural Networks, Computer
- Abstract
Introduction: The aim of the study was to develop deep-learning neural networks to guide treatment decisions and for the accurate evaluation of tumor response to neoadjuvant chemoradiotherapy (nCRT) in rectal cancer using magnetic resonance (MR) images., Methods: Fifty-nine tumors with stage 2 or 3 rectal cancer that received nCRT were retrospectively evaluated. Pathological tumor regression grading was carried out using the Dworak (Dw-TRG) guidelines and served as the ground truth for response predictions. Imaging-based tumor regression grading was performed according to the MERCURY group guidelines from pre-treatment and post-treatment para-axial T2-weighted MR images (MR-TRG). Tumor signal intensity signatures were extracted by segmenting the tumors volumetrically on the images. Normalized histograms of the signatures were used as input to a deep neural network (DNN) housing long short-term memory (LSTM) units. The output of the network was the tumor regression grading prediction, DNN-TRG., Results: In predicting complete or good response, DNN-TRG demonstrated modest agreement with Dw-TRG (Cohen's kappa= 0.79) and achieved 84.6% sensitivity, 93.9% specificity, and 89.8% accuracy. MR-TRG revealed 46.2% sensitivity, 100% specificity, and 76.3% accuracy. In predicting a complete response, DNN-TRG showed slight agreement with Dw-TRG (Cohen's kappa= 0.75) with 71.4% sensitivity, 97.8% specificity, and 91.5% accuracy. MR-TRG provided 42.9% sensitivity, 100% specificity, and 86.4% accuracy. DNN-TRG benefited from higher sensitivity but lower specificity, leading to higher accuracy than MR-TRG in predicting tumor response., Conclusion: The use of deep LSTM neural networks is a promising approach for evaluating the tumor response to nCRT in rectal cancer.
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- 2024
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11. Development and validation of a digital twin of the human lower jaw under impact loading by using non-linear finite element analyses.
- Author
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Demir O, Uslan I, Buyuk M, and Salamci MU
- Subjects
- Humans, Finite Element Analysis, Biomechanical Phenomena, Cadaver, Stress, Mechanical, Mandible physiology, Mandibular Fractures
- Abstract
Mandibular fractures are one of the most frequently observed injuries within craniofacial region mostly due to tumor-related problems and traumatic events, often related to non-linear effects like impact loading. Therefore, a validated digital twin of the mandible is required to develop the best possible patient-specific treatment. However, there is a need to obtain a fully compatible numerical model that can reflect the patients' characteristics, be available and accessible quickly, require an acceptable level of modeling efforts and knowledge to provide accurate, robust and fast results at the same time under highly non-linear effects. In this study, a validated simulation methodology is suggested to develop a digital twin of mandible, capable of predicting the non-linear response of the biomechanical system under impact loading, which then can be utilized to design treatment strategies even for multiple fractures of the mandibular system. Using Computed Tomography data containing cranial (skull) images of a patient, a 3-dimensional mandibular model, which consists cortical and cancellous bones, disks and fossa is obtained with high accuracy that is compatible with anatomical boundaries. A Finite Element Model (FEM) of the biomechanical system is then developed for a three-level validation procedure including (A) modal analysis, (B) dynamic loading and (C) impact loading. For the modal analysis stage: Free-free vibration modes and frequencies of the system are validated against cadaver test results. For the dynamic loading stage: Two different regions of the mandible are loaded, and maximum stress levels of the system are validated against finite element analyses (FEA) results, where the first loading condition (i) transfers a 2000 N force acting on the symphysis region and, the second loading condition (ii) transfers a 2000 N force acting on the left body region. In both cases, equivalent muscle forces dependent on time are applied. For the impact loading stage: Thirteen different human mandibular models with various tooth deficiencies are used under the effects of traumatic impact forces that are generated by using an impact hammer with different initial velocities to transfer the impulse and momentum, where contact forces and fracture patterns are validated against cadaver tests. Five different anatomical regions are selected as the impact site. The results of the analyzes (modal, dynamic and impact) performed to validate the digital twin model are compared with the similar FEA and cadaver test results published in the literature and the results are found to be compatible. It has been evaluated that the digital twin model and numerical models are quite realistic and perform well in terms of predicting the biomechanical behavior of the mandible. The three-level validation methodology that is suggested in this research by utilizing non-linear FEA has provided a reliable road map to develop a digital twin of a biomechanical system with enough confidence that it can be utilized for similar structures to offer patient-specific treatments and can help develop custom or tailor-made implants or prosthesis for best compliance with the patient even considering the most catastrophic effects of impact related trauma., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
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- 2023
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12. Evaluation of MUC1, MUC2, MUC5AC, and MUC6 Expression Differences in Lung Adenocarcinoma Subtypes by Using a Final Immunoreactivity Score (FIRS).
- Author
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Buyuk M, Ozluk Y, Bakkaloglu DV, Ozkan B, Firat P, and Yilmazbayhan D
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- Humans, Biomarkers, Tumor metabolism, Lymphatic Metastasis, Mucin 5AC metabolism, Mucin-1 metabolism, Mucin-2 metabolism, Mucin-6 metabolism, Retrospective Studies, Adenocarcinoma of Lung, Adenocarcinoma, Mucinous metabolism, Adenocarcinoma, Mucinous pathology, Lung Neoplasms metabolism
- Abstract
Objective: Lung adenocarcinomas are divided into acinar, lepidic, papillary, micropapillary, and solid predominant subtypes according to the current World Health Organization (WHO) classification. We designed this retrospective study to demonstrate profiles of MUC expression (MUC1, MUC2, MUC5AC, and MUC6) of different histologic patterns within the same tumor among pulmonary adenocarcinomas and investigate correlations of MUC expression with clinicopathologic features., Material and Method: We analyzed the expression of mucins (MUC1, MUC2, MUC5AC, and MUC6) in a series of 99 resected lung adenocarcinomas, which included a total of 193 patterns (71 acinar, 30 lepidic, 25 papillary, 20 micropapillary, 34 solid and 13 mucinous) and calculated a final immune reactivity score (FIRS) per tumor., Results: MUC1 IRS scores were significantly higher in lepidic and solid patterns compared with mucinous patterns (p=0.013). MUC2 expression was seen only in three cases (1 acinar, 2 mucinous). MUC5AC and MUC2 expression was more common in mucinous patterns (p < 0.001 and p=0.028, respectively). MUC6 expression was only detected in seven patterns and the expression was weak. No significant difference was seen among histologic patterns for the staining scores of MUC6. Mucinous adenocarcinoma differed from other histologic subtypes regarding MUC1 and MUC5AC expression. Mucinous adenocarcinoma showed less MUC1 expression with lower IRS scores and higher MUC5AC expression. Tumor size (p=0.006), lymphatic invasion (p=0.018), vascular invasion (p=0.025), perineural invasion (p=0.019), MUC1 IRS scores (p=0.018), and MUC1 IRS scores > 8.5 (p=0.018) were significant predictors for lymph node metastasis., Conclusion: An alternative scoring for MUC1 can be used as a predictor for lymph node metastasis regardless of the histologic subtype.
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- 2023
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13. Diagnostic accuracy of core biopsies of renal masses: Experience in a real-life setting from a tertiary center.
- Author
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Altay AY, Karatay H, Bakir B, Erdem S, Buyuk M, Ozcan F, Kilicaslan I, and Ozluk Y
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- Adult, Aged, Aged, 80 and over, Biopsy, Large-Core Needle methods, Carcinoma, Renal Cell diagnosis, Carcinoma, Renal Cell pathology, Diagnosis, Differential, Epithelial Cells pathology, Female, Humans, Immunohistochemistry, Kidney cytology, Kidney pathology, Male, Middle Aged, Retrospective Studies, Kidney Neoplasms diagnosis, Kidney Neoplasms pathology
- Abstract
Objective: To document and analyze diagnostic accuracy of renal core biopsy (RCB), its diagnostic correlation with resection specimens, and to question the need for immunohistochemistry (IHC) in the preoperative diagnosis of renal masses., Material and Method: RCBs performed at a reference center between 2007 and 2017 were included. Pathological, clinical, and radiological data were obtained from medical records., Results: Among 302 biopsies included in this study, 274 (90.7%) were diagnostic. Two hundred sixty-six were neoplastic and 179 were of primary renal origin. The most common secondary neoplasms were hematolymphoid (n = 35) and metastatic (n = 17). Sixty-nine tumors were classified as small renal masses (SRMs) (≤4 cm in diameter) and 53 of them were malignant. Nephrectomy was performed in 58 patients. Overall diagnostic accuracy between resections and RCBs was 88.7%. IHC was performed in 160 (53%) cases. In 15 of those, a definite diagnosis could not be rendered. Renal cell origin and subtype were determined by histomorphology alone in 81 and 75 cases, respectively. Sixty primary neoplasms of renal cell origin required IHC for diagnosis., Conclusion: RCB is a safe and highly accurate method for the diagnosis of both primary and secondary renal neoplasms. IHC is mostly required for the diagnosis of secondary tumors. Histomorphology is still the primary diagnostic tool, highly dependent on the experience of the surgical pathologist., (Copyright © 2021 Elsevier Inc. All rights reserved.)
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- 2021
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14. What are the predictors for recurrence of Crohn's disease after surgery?
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Ozgur I, Kulle CB, Buyuk M, Ormeci A, Akyuz F, Balik E, Bulut T, and Keskin M
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- Abdominal Abscess epidemiology, Adult, Age Factors, Aged, Aged, 80 and over, Cigarette Smoking epidemiology, Female, Humans, Intestinal Fistula epidemiology, Male, Middle Aged, Recurrence, Retrospective Studies, Risk Factors, Severity of Illness Index, Young Adult, Crohn Disease pathology, Crohn Disease surgery
- Abstract
Abstract: Surgical resection is an unavoidable part of the current treatment options for Crohn's disease (CD), and more than half of patients develop recurrence. The aim of this study was to investigate the predictors for recurrence in the long-term follow-up of CD patients after surgery.Medical records of consecutive CD patients who were operated on between January 2003 and January 2015 were retrospectively analyzed. Data including demographic and clinical characteristics of the patients were recorded. Recurrence was evaluated based on the Crohn's Disease Activity Index or endoscopic findings.The majority of 112 patients were males (n = 64, 57.1%), and 61 (54.4%) of them were active smokers. The median follow-up was 113 (range: 61-197) months. Disease recurrence occurred in 16 (14.3%) patients at a median of 13.5 months. The endoscopic recurrence rate was 8% (n = 9) at 1 year, 12.5% (n = 14) at 5 years, and 13.4% (n = 15) at 10 years. One (0.9%) patient underwent colonoscopic balloon dilatation at 1 year, and 7 (6.3%) patients needed re-resection at a median of 36 months. The age of the patient at the time of diagnosis (P = .033), penetrating disease behavior (P = .011), intra-abdominal abscess (P = 0.040) and, concomitant fistula and intra-abdominal abscess (P = .017) were associated with disease recurrence.Our study results suggest that the patients' age at the time of diagnosis, penetrating disease, intra-abdominal abscess, and concomitant fistula and abscess are the risk factors for CD recurrence after surgery., Competing Interests: The authors have no conflicts of interest to disclose., (Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc.)
- Published
- 2021
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15. Diagnostic significance of cytomegalovirus DNA quantitation in gastrointestinal biopsies: comparison with histopathological data and blood cytomegalovirus DNA.
- Author
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Alacam S, Karabulut N, Bakir A, Onel M, Buyuk M, Gulluoglu M, and Agacfidan A
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- Adult, Biopsy, DNA, Viral, Humans, Male, Real-Time Polymerase Chain Reaction, Sensitivity and Specificity, Viral Load, Cytomegalovirus genetics, Cytomegalovirus Infections diagnosis
- Abstract
Objectives: This study aims to improve the diagnosis of gastrointestinal (GI) cytomegalovirus (CMV) disease. It presents the results of a novel study in which CMV blood viral load (BVL), tissue viral load (TVL) determined by PCR and hematoxylin-eosin (HE)/immunohistochemistry (IHC) results of GI biopsies are examined comparatively., Methods: CMV DNA was investigated by quantitative real-time PCR in blood and GI biopsy specimens of 76 patients suspected of CMV disease. Biopsies were also performed HE/IHC stainings in the pathology laboratory., Results: This study included 76 patients whose median age was 34.5 years and 58% (44) were male. Tissue CMV PCR positivity was detected in the highest colon (40/53;75.5%) samples. HE, IHC, blood and tissue CMV PCR positivity rates of all samples were 15.8, 25, 50 and 71.1%, respectively. When IHC was used as the gold standard test for ROC analysis, the optimal cutoff values for the maximum sensitivity and specificity for BVL and TVL were 1.91 log10 copies/ml and 3.82 log10 copies/mg, respectively. Sensitivity and specificity for the cutoff value of tissue CMV DNA were 78.9 and 74.3%, respectively (P < 0.001)., Conclusion: In this study, CMV DNA was detected in 71.1% of the tissue samples of the cases by PCR. Since the sensitivity of the histopathological examinations accepted as the gold standard is low, simultaneous with the histopathological examinations, determination of BVL, TVL and the identification of optimal cutoff values have been shown to support the diagnosis of GI CMV disease.
- Published
- 2021
- Full Text
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