31 results on '"Busra Aydin"'
Search Results
2. Introducing New Exponential Zagreb Indices for Graphs
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Nihat Akgunes and Busra Aydin
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Mathematics ,QA1-939 - Abstract
New graph invariants, named exponential Zagreb indices, are introduced for more than one type of Zagreb index. After that, in terms of exponential Zagreb indices, lists on equality results over special graphs are presented as well as some new bounds on unicyclic, acyclic, and general graphs are obtained. Moreover, these new graph invariants are determined for some graph operations.
- Published
- 2021
- Full Text
- View/download PDF
3. Co-expression Network Analysis Elucidated a Core Module in Association With Prognosis of Non-functioning Non-invasive Human Pituitary Adenoma
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Busra Aydin and Kazim Yalcin Arga
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co-expression ,differential co-expression network ,non-functional pituitary adenoma ,invasiveness ,prognosis ,biomarker ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Non-functioning pituitary adenomas (NFPAs) are tumors with clinically challenging features since they have insidious progression. A complex network of gene interactions is thought to have roles in tumor formation and progression. Therefore, revealing the genetic network behind NFPA tumorigenesis is not only essential to attain further knowledge of tumor biology, but also plays a fundamental role in the development of efficacious treatment strategies. Differential co-expression network analysis is an outstanding approach for elucidation of groups of genes which show distinct co-expression patterns among phenotypes. In this study, we carried out a differential co-expression network analysis of NFPA-associated transcriptome dataset (n = 40) considering invasive (n = 22) and non-invasive (n = 18) phenotypes. Furthermore, we identified differentially co-expressed and co-regulated mRNA modules, which might be considered as potential systems biomarkers for NFPA prognosis and invasiveness. As a result, we have identified a novel 13-gene module, including CEACAM6, CYP4B1, EIF2S2, HID1, IFFO1, MYO18A, PDCD2, SGIP1, SWSAP1, and four unknown genes (A_24_P127621, A_24_P255786, A_24_P683553, and A_24_P916979), which was able to categorize the patients into two groups as invasive and non-invasive NFPA with distinct prognosis. The prognostic core module genes were associated with progression and prognosis of brain and glandular based cancers as well. Furthermore, these module genes were also expressed in blood, salivary gland, and spinal cord tissues. These results may provide the evidence on featured gene module which might play a prominent role in NFPA prognosis and sub-typing as effective biomarkers and therapeutic targets in the future.
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- 2019
- Full Text
- View/download PDF
4. A Transcriptomic and Reverse-Engineering Strategy Reveals Molecular Signatures of Arachidonic Acid Metabolism in 12 Cancers
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Elif Kubat Oktem, Busra Aydin, Gizem Gulfidan, and Kazim Yalcin Arga
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Genetics ,Molecular Medicine ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2023
5. Reduced irisin levels in patients with acromegaly
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Suleyman Nahit Sendur, Gokhan Baykal, Busra Firlatan, Busra Aydin, Incilay Lay, Selcuk Dagdelen, Mehmet Alikasifoglu, and Tomris Erbas
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Adult ,Endocrinology, Diabetes and Metabolism ,General Medicine ,Middle Aged ,Ligands ,Fibronectins ,Cross-Sectional Studies ,Endocrinology ,Case-Control Studies ,Growth Hormone ,Acromegaly ,Humans ,Receptors, Somatostatin ,Insulin-Like Growth Factor I ,Somatostatin ,Molecular Biology - Abstract
Objectives Several metabolic disturbances are seen in acromegaly however, data regarding the contribution of irisin to these disturbances is currently insufficient. In a cohort of patients with acromegaly, we measured serum irisin levels in active and controlled cases and determined independent factors that effect serum irisin including fibronectin type III domain-containing protein 5 (FNDC5) genotyping. Methods A cross-sectional case-control study including 46 patients with acromegaly (28 F/18 M, age: 50.3 ± 12.1 year, BMI: 30.7 ± 5.1 kg/m2) and 81 age-, gender-, body mass index- and body composition-matched healthy controls was conducted. 15 acromegalic patients (33%) had active disease. Irisin levels were measured by enzyme-linked immunosorbent assay. Three different regions (rs3480, rs1746661, and rs16835198) of FNDC5 were subjected to polymorphism analyses. Results Both groups were overweight and had similar body composition. Irisin levels were lower in patients with acromegaly than controls (median [IQR]: 44.8 [41.7–46.7] ng/mL vs. 51.7 [45.5–60.1] ng/mL, p≤0.001, respectively). Active and controlled patients had similar irisin levels. Irisin was not correlated with growth hormone (GH), insulin-like growth factor 1 (IGF-1), and IGF-1 index. In multiple linear regression model, somatostatin receptor ligand use (β=−20.30, 95% CI [−34]–[−6], p=0.006) was determined as the only independent factor that affect serum irisin. Conclusions Serum irisin levels are low in patients with acromegaly who are on somatostatin receptor ligand therapy. Single nucleotide polymorphisms (SNPs) of FNDC5 have no independent effects on circulating irisin levels under somatostatin ligand action. Endocrine muscle functions also seem to be regulated by somatostatin action, which requires further studies.
- Published
- 2022
6. Past, Present, and Future of Therapies for Pituitary Neuroendocrine Tumors: Need for Omics and Drug Repositioning Guidance
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Busra Aydin, Esra Yildirim, Onur Erdogan, Kazim Yalcin Arga, Betul Karademir Yilmaz, Suheyla Uyar Bozkurt, Fatih Bayrakli, and Beste Turanli
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Neuroendocrine Tumors ,Drug Repositioning ,Genetics ,Humans ,Molecular Medicine ,Pituitary Neoplasms ,Neoplasm Recurrence, Local ,Molecular Biology ,Biochemistry ,Ecosystem ,Biotechnology - Abstract
Innovation roadmaps are important, because they encourage the actors in an innovation ecosystem to creatively imagine multiple possible science future(s), while anticipating the prospects and challenges on the innovation trajectory. In this overarching context, this expert review highlights the present unmet need for therapeutic innovations for pituitary neuroendocrine tumors (PitNETs), also known as pituitary adenomas. Although there are many drugs used in practice to treat PitNETs, many of these drugs can have negative side effects and show highly variable outcomes in terms of overall recovery. Building innovation roadmaps for PitNETs' treatments can allow incorporation of systems biology approaches to bring about insights at multiple levels of cell biology, from genes to proteins to metabolites. Using the systems biology techniques, it will then be possible to offer potential therapeutic strategies for the convergence of preventive approaches and patient-centered disease treatment. Here, we first provide a comprehensive overview of the molecular subtypes of PitNETs and therapeutics for these tumors from the past to the present. We then discuss examples of clinical trials and drug repositioning studies and how multi-omics studies can help in discovery and rational development of new therapeutics for PitNETs. Finally, this expert review offers new public health and personalized medicine approaches on cases that are refractory to conventional treatment or recur despite currently used surgical and/or drug therapy.
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- 2022
7. Prospects of integrated multi-omics-driven biomarkers for efficient hair loss therapy from systems biology perspective
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Dilan Nisa Yilmaz, Ozge Onluturk Aydogan, Medi Kori, Busra Aydin, Md. Rezanur Rahman, Mohammad Ali Moni, Beste Turanli, and Yilmaz D. N. , Aydogan O. O. , Kori M., Aydin B., Rahman M. R. , Moni M. A. , TURANLI B.
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ANDROGENETIC ALOPECIA ,alopecia Systems biology Omics signatures Biomarkers Drug repositioning Therapy Personalized medicine ,Life Sciences (LIFE) ,Molecular Biology and Genetics ,Sağlık Bilimleri ,MECHANISMS ,Tıbbi Genetik ,Yaşam Bilimleri ,Health Sciences ,GENETİK VE HAYAT ,Genetics ,1 MG ,Genetik ,GENOME-WIDE ASSOCIATION ,GENETICS & HEREDITY ,Molecular Biology ,Moleküler Biyoloji ve Genetik ,Genetics (clinical) ,GENE-EXPRESSION ,Internal Medicine Sciences ,Moleküler Biyoloji ,Temel Bilimler ,AREATA ,Drug repositioning ,Life Sciences ,Hair loss ,MEN ,Dahili Tıp Bilimleri ,Omics signatures ,alopecia ,Personalized medicine ,MALE-PATTERN BALDNESS ,Tıp ,MOLECULAR BIOLOGY & GENETICS ,Yaşam Bilimleri (LIFE) ,FOLLICLE ,Genetik (klinik) ,Medicine ,FINASTERIDE ,Therapy ,Natural Sciences ,Systems biology ,Medical Genetics ,Biomarkers - Abstract
The term \"alopecia\" is used for abnormal hair loss and it is a chronic dermatological condition observed in both genders and all races. Androgenetic alopecia (AGA) or male pattern baldness is the most common type of alopecia; however, it may be observed in females. Alopecia areata (AA) is the second most common non-scarring alopecia or hair loss around the world. Beyond the fact that alopecia is a disease itself, sometimes it might be one of the major side effects of many drugs including chemotherapeutics. Since healthy hair has been a symbol of well-being, youth, and vitality for centuries, the treatment of alopecia has essential importance to increasing life quality of the individuals that have faced hair loss. Regarding the progressively generated high-throughput data at various omics levels, systems biology has gained importance to better understand biologic processes by utilizing high-throughput data from multiple sources to develop models of biologic processes In this review, we overviewed AGA and AA via systems biology with the aid of omics technologies point of view to highlight not only the molecular mechanisms of the hair loss phenomenon but also potential preventive and therapeutic avenues. We discussed the findings in light of the multi-omics data integration that converges the future of uncovering personalized therapeutic options targeting hair loss.
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- 2022
8. Integrative analysis of motor neuron and microglial transcriptomes from SOD1(G93A) mice models uncover potential drug treatments for ALS
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Elif Kubat Oktem, Busra Aydin, Metin Yazar, Kazim Yalcin Arga, and KUBAT ÖKTEM E., Aydin B., Yazar M., ARĞA K. Y.
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İnsan Bilgisayar Etkileşimi ,Cancer Research ,Aging ,Bilişsel Sinirbilim ,NEUROSCIENCES ,NEUROSCIENCE & BEHAVIOR ,Clinical Biochemistry ,Genel Biyokimya, Genetik ve Moleküler Biyoloji ,Genel Sinirbilim ,Biochemistry ,AMYOTROPHIC-LATERAL-SCLEROSIS ,CYTOTOXIC SECRETIONS ,PARKINSONS-DISEASE ,Structural Biology ,BİYOKİMYA VE MOLEKÜLER BİYOLOJİ ,Biyokimya ,Yaşlanma ,Drug Discovery ,Repositioned therapeutics ,İlaç Keşfi ,AURORA-B ,Moleküler Biyoloji ,Temel Bilimler ,General Neuroscience ,Life Sciences ,General Medicine ,MOUSE MODEL ,Biyokimya, Genetik ve Moleküler Biyoloji (çeşitli) ,Sensory Systems ,MOLECULAR BIOLOGY & GENETICS ,Physical Sciences ,Sinirbilim ve Davranış ,SPINAL-CORD ,Natural Sciences ,BIOCHEMISTRY & MOLECULAR BIOLOGY ,Sitogenetik ,EXPRESSION ,Sinirbilim (çeşitli) ,Cognitive Neuroscience ,INCREASES SURVIVAL ,Neuroscience (miscellaneous) ,Life Sciences (LIFE) ,Molecular Biology and Genetics ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,General Biochemistry, Genetics and Molecular Biology ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Yaşam Bilimleri ,Cytogenetic ,Molecular Biology ,Moleküler Biyoloji ve Genetik ,Hücresel ve Moleküler Sinirbilim ,Yapısal Biyoloji ,Drug repositioning ,DISEASE PROGRESSION ,IN-VITRO ,Amyotrophic lateral sclerosis ,Duyusal Sistemler ,Human-Computer Interaction ,Klinik Biyokimya ,Fizik Bilimleri ,Transcriptomic ,Yaşam Bilimleri (LIFE) ,SOD1 mutation ,Gelişimsel Sinirbilim ,Kanser Araştırmaları - Abstract
Amyotrophic lateral sclerosis (ALS) is a fatal disease of motor neurons that mainly affects the motor cortex, brainstem, and spinal cord. Under disease conditions, microglia could possess two distinct profiles, M1 (toxic) and M2 (protective), with the M2 profile observed at disease onset. SOD1 (superoxide dismutase 1) gene mutations account for up to 20% of familial ALS cases. Comparative gene expression differences in M2-protective (early) stage SOD1(G93A) microglia and age-matched SOD1(G93A) motor neurons are poorly understood. We evaluated the differential gene expression profiles in SOD1(G93A) microglia and SOD1(G93A) motor neurons utilizing publicly available transcriptomics data and bioinformatics analyses, constructed biomolecular networks around them, and identified gene clusters as potential drug targets. Following a drug repositioning strategy, 5 small compounds (belinostat, auranofin, BRD-K78930611, AZD-8055, and COT-10b) were repositioned as potential ALS therapeutic candidates that mimic the protective state of microglia and reverse the toxic state of motor neurons. We anticipate that this study will provide new insights into the ALS pathophysiology linking the M2 state of microglia and drug repositioning.
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- 2022
9. Two Siblings with Kaufman Oculocerebrofacial Syndrome Resembling Oculoauriculovertebral Spectrum
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Gülen Eda Utine, Pelin Ozlem Simsek-Kiper, Özlem Akgün-Doğan, Beren Karaosmanoglu, Ekim Z. Taskiran, Koray Boduroğlu, Gizem Ürel-Demir, and Busra Aydin
- Subjects
0303 health sciences ,medicine.medical_specialty ,Microcephaly ,business.industry ,030305 genetics & heredity ,Microtia ,Telecanthus ,Gene mutation ,medicine.disease ,Kaufman oculocerebrofacial syndrome ,Dermatology ,Blepharophimosis ,03 medical and health sciences ,Ptosis ,Novel Insights from Clinical Practice ,Failure to thrive ,Genetics ,medicine ,medicine.symptom ,business ,Genetics (clinical) ,030304 developmental biology - Abstract
Kaufman oculocerebrofacial syndrome is a rare autosomal recessive disorder which represents a phenotype mainly involving craniofacial and neurodevelopmental manifestations due to UBE3B gene mutations. The vast majority of the affected individuals exhibit microcephaly, eye abnormalities, and typical facial gestalt including blepharophimosis, ptosis, telecanthus, upslanting palpebral fissures, dysplastic ears, and micrognathia. We encountered 2 siblings in whom severe psychomotor delay, distinctive facial features, hearing loss, and respiratory distress were observed. Some clinical manifestations of the patients, including epibulbar dermoid, microtia, and multiple preauricular tags, were reminiscent of the oculoauriculovertebral spectrum. However, 2 affected siblings exhibited a similar clinical picture consisting of microcephaly, severe developmental and cognitive disabilities, failure to thrive, and dysmorphic features, which were not fully consistent with oculoauriculovertebral spectrum. Also, hypoplastic nails, considered as a core manifestation of Coffin-Siris syndrome, were present in our patients. Therefore, whole-exome sequencing was carried out in order to identify the underlying genetic alterations, contributing to the complex phenotype shared by the 2 siblings. A homozygous pathogenic mutation was found in both affected siblings in the UBE3B gene which caused Kaufman oculocerebrofacial syndrome. Kaufman oculocerebrofacial syndrome should be considered among the autosomal recessive causes of blepharophimosis-mental retardation syndromes, particularly in populations with a high rate of consanguineous marriages, even if there are dysmorphic facial features that are not typically associated with the phenotype.
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- 2021
10. On the Wiener Index of the Dot Product Graph over Monogenic Semigroups
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Ismail Naci Cangul, Busra Aydin, and Nihat Akgüneş
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Statistics and Probability ,Discrete mathematics ,Numerical Analysis ,Algebra and Number Theory ,Mathematical chemistry ,Spectral graph theory ,Applied Mathematics ,Dot product ,Wiener index ,Topological graph ,Theoretical Computer Science ,chemistry.chemical_compound ,chemistry ,Topological index ,Molecular graph ,Geometry and Topology ,Connectivity ,Mathematics - Abstract
Algebraic study of graphs is a relatively recent subject which arose in two main streams: One is named as the spectral graph theory and the second one deals with graphs over several algebraic structures. Topological graph indices are widely-used tools in especially molecular graph theory and mathematical chemistry due to their time and money saving applications. The Wiener index is one of these indices which is equal to the sum of distances between all pairs of vertices in a connected graph. The graph over the nite dot product of monogenic semigroups has recently been dened and in this paper, some results on the Wiener index of the dot product graph over monogenic semigroups are given.
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- 2020
11. Integrative Analysis of Motor Neuron and Microglial Transcriptomes from SOD1
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Elif, Kubat Oktem, Busra, Aydin, Metin, Yazar, and Kazim Yalcin, Arga
- Abstract
Amyotrophic lateral sclerosis (ALS) is a fatal disease of motor neurons that mainly affects the motor cortex, brainstem, and spinal cord. Under disease conditions, microglia could possess two distinct profiles, M1 (toxic) and M2 (protective), with the M2 profile observed at disease onset. SOD1 (superoxide dismutase 1) gene mutations account for up to 20% of familial ALS cases. Comparative gene expression differences in M2-protective (early) stage SOD1
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- 2022
12. Novel insights into diabetes mellitus due to <scp>DNAJC3</scp> ‐ defect: Evolution of neurological and endocrine phenotype in the pediatric age group
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Nur Berna Celik, Ekim Z. Taskiran, Gülen Eda Utine, E. Nazli Gonc, Ayfer Alikasifoglu, Nurgun Kandemir, Goknur Haliloglu, Busra Aydin, Mehmet Alikasifoglu, Pelin Özlem Şimşek Kiper, Nesibe Gevher Eroglu‐Ertugrul, Dilek Yalnizoglu, Kader Karli Oguz, Beren Karaosmanoglu, and Z. Alev Ozon
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Male ,Nervous system ,Adolescent ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,Bioinformatics ,medicine.disease_cause ,Growth hormone deficiency ,Diabetes Complications ,03 medical and health sciences ,0302 clinical medicine ,Diabetes mellitus ,Diabetes Mellitus ,Internal Medicine ,medicine ,Humans ,Endocrine system ,030212 general & internal medicine ,Child ,Hyperinsulinemic hypoglycemia ,business.industry ,Neurodegeneration ,HSP40 Heat-Shock Proteins ,medicine.disease ,Phenotype ,Natural history ,medicine.anatomical_structure ,Pediatrics, Perinatology and Child Health ,Female ,business - Abstract
Background A number of inborn errors of metabolism caused by abnormal protein trafficking that lead to endoplasmic reticulum storage diseases (ERSD) have been defined in the last two decades. One such disorder involves biallelic mutations in the gene encoding endoplasmic reticulum resident co-chaperone DNAJC3 (P58IPK ) that leads to diabetes in the second decade of life, in addition to multiple endocrine dysfunction and nervous system involvement. Objective The aim of this study was to define the natural history of this new form of diabetes, especially the course of abnormalities related to glucose metabolism. Methods Whole-exome and Sanger sequencing was used to detect DNAJC3 defect in two patients. Detailed analysis of their clinical history as well as biochemical, neurological and radiological studies were carried out to deduce natural history of neurological and endocrine phenotype. Results DNAJC3 defect led to beta-cell dysfunction causing hyperinsulinemichypoglycemia around 2 years of age in both patients, which evolved into diabetes with insulin deficiency in the second decade of life, probably due to beta cell loss. Endocrine phenotype involved severe early-onset growth failure due to growth hormone deficiency, and hypothyroidism of central origin. Neurological phenotype involved early onset sensorineural deafness discovered around 5 to 6 years, and neurodegeneration of central and peripheral nervous system in the first two decades of life. Conclusion Biallelic loss-of-function in the ER co-chaperone DNAJC3 leads to a new form of diabetes with early onset hyperinsulinemic hypoglycemia evolving into insulin deficiency as well as severe growth failure, hypothyroidism and diffuse neurodegeneration.
- Published
- 2020
13. Human splenic polymorphonuclear myeloid‐derived suppressor cells (PMN‐MDSC) are strategically located immune regulatory cells in cancer
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Kerim Bora Yilmaz, Erhan Hamaloglu, Busra Aydin, Hamdullah Yanik, Digdem Yoyen-Ermis, Gunes Esendagli, Aysegul Uner, Safa K. Nural, Utku Horzum, Ece Tavukcuoglu, Derya Karakoc, and Cenk Sokmensuer
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Adult ,Male ,0301 basic medicine ,White pulp ,Neutrophils ,T-Lymphocytes ,T cell ,Immunology ,Spleen ,Granulocyte ,Biology ,Lymphocyte Activation ,Interferon-gamma ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Stomach Neoplasms ,Pancreatic cancer ,medicine ,Humans ,Immunology and Allergy ,Myeloid Cells ,Aged ,Cell Proliferation ,Aged, 80 and over ,Myeloid-Derived Suppressor Cells ,Middle Aged ,medicine.disease ,Pancreatic Neoplasms ,030104 developmental biology ,medicine.anatomical_structure ,Cancer research ,Myeloid-derived Suppressor Cell ,Female ,Periarteriolar lymphoid sheaths ,030215 immunology - Abstract
In contrast to the mouse, functional assets of polymorphonuclear myeloid-derived suppressor cells (PMN-MDSC) in the human spleen remain to be better elucidated. Here, we report that the spleen in gastric and pancreatic cancer adopts an immune regulatory character, harbors excessive amount of PMN-MDSC, and anatomically enables their interaction with T cells. Compared to the peripheral blood, the spleen from cancer patients contained significantly higher levels of low-density PMN-MDSC, but not early-stage MDSC (e-MDSC) and monocytic-MDSC (M-MDSC). Low-density fraction of polymorphonuclear (PMN) cells was enriched in immature myeloid cells and displayed higher levels of CD10, CD16, and ROS than their blood-derived counterparts. They were also positive for PD-L1, LOX-1, and pSTAT3. The white pulp and periarteriolar lymphoid sheath (PALS) were strategically surrounded by PMN cells that were in contact with T cells. Unlike those from the blood, both low-density and normal-density PMN cells from the human spleen suppressed T cell proliferation and IFN-γ production. Independent of clinical grade, high PMN-MDSC percentages were associated with decreased survival in gastric cancer. In summary, our results outline the immune regulatory role of the spleen in cancer where neutrophils acquire MDSC functions and feasibly interact with T cells.
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- 2020
14. Omics-Driven Biomarkers of Psoriasis: Recent Insights, Current Challenges, and Future Prospects
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Ayse Serap Karadag, Busra Aydin, and Kazim Yalcin Arga
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business.industry ,Context (language use) ,Dermatology ,Computational biology ,Omics ,medicine.disease ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Psoriasis ,medicine ,Biomarker (medicine) ,Personalized medicine ,Biomarker discovery ,business ,Omics technologies - Abstract
Advances in omics technologies have made it possible to unravel biomarkers from different biological levels. Intensive studies have been carried out to uncover the dysregulations in psoriasis and to identify molecular signatures associated with the pathogenesis of psoriasis. In this review, we presented an overview of the current status of the omics-driven biomarker research and emphasized the transcriptomic, epigenomic, proteomic, metabolomic, and glycomic signatures proposed as psoriasis biomarkers. Furthermore, insights on the limitations and future directions of the current biomarker discovery strategies were discussed, which will continue to comprehend broader visions of psoriasis research, diagnosis, and therapy especially in the context of personalized medicine.
- Published
- 2020
15. Specific FSTL1 polymorphism may determine the risk of cardiomyopathy in patients with acromegaly
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Tuncay Hazirolan, Incilay Lay, Busra Aydin, Mehmet Alikasifoglu, Suleyman Nahit Sendur, and Tomris Erbas
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Adult ,medicine.medical_specialty ,Follistatin-Related Proteins ,business.industry ,Cardiomyopathy ,Cardiac index ,Single-nucleotide polymorphism ,General Medicine ,Stroke volume ,Middle Aged ,Left ventricular hypertrophy ,medicine.disease ,Cross-Sectional Studies ,Polymorphism (computer science) ,Internal medicine ,Bayesian multivariate linear regression ,Acromegaly ,Cardiology ,Medicine ,Humans ,Hypertrophy, Left Ventricular ,Cardiology and Cardiovascular Medicine ,business ,Cardiomyopathies - Abstract
Background We have investigated the role of a cardiomyokine, follistatin-like 1 (FSTL1), and its single nucleotide polymorphism on acromegalic cardiomyopathy. Methods The study was performed as a cross-sectional case research in a Tertiary Referral Centre. Forty-six patients with acromegaly (29 F-17 M, mean age: 50.3 ± 12.1 years) were included. FSTL1 levels were measured and the rs1259293 region of the FSTL1 gene was subjected to polymorphism analysis. 1.5 Tesla MRI was used to obtain cardiac images. Results There were 15 active (6 F-9M) and 31 (22 F-9M) controlled patients. Active patients had a higher left ventricular mass (LVM) and left ventricular mass index (LVMi). GH levels were positively correlated with left ventricular end-diastolic volume index (LVEDVi), stroke volume index (SVi), cardiac index (Ci), LVM and LVMi; r = 0.35, 0.38, 0.34, 0.39 and 0.39, respectively. IGF-1 index was positively correlated with LVEDVi, left ventricular end-systolic volume index (LVESVi), SVi, Ci, LVM and LVMi; r = 0.36, 0.34, 0.32, 0.31, 0.42 and 0.42, respectively. Twenty out of 46 patients with acromegaly (43.5%) had myocardial fibrosis. FSTL1 levels were neither correlated with disease activity nor with any functional and structural cardiac parameter. Multivariate linear regression analysis revealed no association between FSTL1 and any study parameters. The rs1259293 variant genotype CC was significantly associated with low left ventricular mass. Conclusions Serum FSTL1 levels are not associated with functional and structural measures of myocardium in patients with acromegaly. However, the risk of left ventricular hypertrophy is reduced in CC genotyped individuals of FSTL1.
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- 2021
16. Overview of omics biomarkers in pituitary neuroendocrine tumors to design future diagnosis and treatment strategies
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Kazim Yalcin Arga, Aysegul Caliskan, Busra Aydin, İstinye Üniversitesi, Eczacılık Fakültesi, Eczacılık Temel Bilimleri Bölümü, and Caliskan Iscan, Aysegul
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Transsphenoidal surgery ,Pituitary Adenoma ,business.industry ,Health Policy ,medicine.medical_treatment ,Biochemistry (medical) ,Multi-Omics Data Integration ,Context (language use) ,Omics Biomarkers ,Disease ,Review ,Neuroendocrine tumors ,Bioinformatics ,medicine.disease ,Targeted therapy ,Predictive Preventive Personalized Medicine ,Drug Discovery ,Medicine ,Biomarker (medicine) ,Personalized medicine ,Biomarker discovery ,business ,Pituitary Neuroendocrine Tumors ,Biomarkers - Abstract
Pituitary neuroendocrine tumors (PitNETs) are the second most common type of intracranial neoplasia. Since their manifestation usually causes hormone hypersecretion, effective management of PitNETs is indisputably necessary. Most of the non-functioning PitNETs pose a real challenge in diagnosis as they grow without giving any signs. Despite the good response of prolactinomas to dopamine agonist therapy, some of these tumors persist or recur; also, about 20% are resistant and 10% behave aggressively. The silent corticotropinomas may not cause symptoms until the tumor mass causes a complication. In somatotropinomas, the possibility of recurrence after transsphenoidal resection is more common in pediatric patients than in adult patients. Therefore, detection of tumors at early stages or identification of recurrence and remission after transsphenoidal surgery would allow wiser management of the disease. Extensive studies have been performed to uncover potential signatures that can be used for preventive diagnosis and/or prognosis of PitNETs as well as for targeted therapy. These molecular signatures at multiple biological levels hold promise for the convergence of preventive approaches and patient-centered disease management and offer potential therapeutic strategies. In this review, we provide an overview of the omics-based biomarker research and highlight the multi-omics signatures that have been proposed as pitNET biomarkers. In addition, understanding the multi-omics data integration of current biomarker discovery strategies was discussed in terms of preventive, predictive, and personalized medicine. The topics discussed in this review will help to develop broader visions for pitNET research, diagnosis, and therapy, particularly in the context of personalized medicine. WOS:000666821500001 Q1
- Published
- 2021
17. BRAF V600E mutation in papillary thyroid cancer is correlated with adverse clinicopathological features but not with iodine exposure
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Serhat Özçelik, Rifat Bircan, Melike Ozcelik, Aylin Ege Gul, Akin Dayan, Nimet Karadayi, Mehmet Celik, Sukran Sarikaya, Busra Aydin, Yasemin Tutuncu, Hasret Cengiz, and Hulya Iliksu Gozu
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Adult ,Male ,Proto-Oncogene Proteins B-raf ,medicine.medical_specialty ,endocrine system diseases ,Endocrinology, Diabetes and Metabolism ,DNA Mutational Analysis ,chemistry.chemical_element ,030209 endocrinology & metabolism ,Braf(V600e) Mutation ,Iodine ,Gene ,Gastroenterology ,Papillary thyroid cancer ,Iodine Radioisotopes ,Association ,Thyroid carcinoma ,Pathogenesis ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Recurrence ,Internal medicine ,Prevalence ,medicine ,Humans ,Neoplasm Invasiveness ,papillary thyroid cancer ,Thyroid Neoplasms ,Stage (cooking) ,BRAF V600E ,iodine ,business.industry ,Carcinoma ,Middle Aged ,medicine.disease ,Carcinoma, Papillary ,chemistry ,Mutation (genetic algorithm) ,Population study ,Female ,Braf V600e Mutation ,business - Abstract
Introduction: BRAF(V600E) activating mutation is the most frequent genetic abnormality in the pathogenesis of papillary thyroid carcinoma. We aimed to evaluate the association between BRAF(V600E )mutation and well-established prognostic clinicopathological characteristics as well as iodine exposure. Material and methods: From 2000 to 2012, the data of PTC patients admitted to Dr. Lutfi Kirdar Kartal Education and Research Hospital in Turkey were reviewed retrospectively. Clinicopathological parameters were collected. BRAF(V600E) mutation was analysed by DNA sequencing method in tumour specimens. We hypothesised that BRAF(V600E) mutation prevalence is positively correlated with prolonged iodine exposure and expected to be higher in the second half of the recruitment period due to the increment in time spent from the iodisation process of the table salt in our country. Thus, iodine exposure was categorised as short-term (2000-2006) and long-term (2006-2012). Results: A total of 197 patients were accrued. The study population predominantly consisted of conventional variant. A statistically significant relationship was observed between BRAF(V600E) mutation presence and age (p = 0.03), conventional variant PTC (p = 0.00002), T4 stage (p= 0.002), vascular invasion (p= 0.036), thyroid capsule invasion (p < 0.00001), extrathyroidal tissue invasion (p < 0.00001), and lymph node metastasis (p < 0.00001). When categorised as long-term and short-term, iodine exposure was not statistically significantly related with BRAF(V600E) mutation; however, there were far more PTC cases in the long-term group (86.3% vs. 13.7%). Conclusion: We revealed that BRAF(V600E) mutation is associated with adverse clinicopathological parameters. There appeared to be no relation between long-term iodine exposure and BRAF(V600E). Research Fund of the Tekirdag Namik Kemal University [NKUBAP.01, YL.16.021] This work was supported by a grant of the Research Fund of the Tekirdag Namik Kemal University (Project number: NKUBAP.01.YL.16.021).
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- 2019
18. The repertoire of glycan alterations and glycoproteins in human cancers
- Author
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Beste Turanli, Kazim Yalcin Arga, Betul Karademir, Busra Aydin, Nurdan Kelesoglu, Ayşegul Caliskan Iscan, Gizem Gulfidan, Medi Kori, Can Erzik, Hande Beklen, İstinye Üniversitesi, Eczacılık Fakültesi, Eczacılık Temel Bilimleri Bölümü, and Caliskan Iscan, Aysegul
- Subjects
0301 basic medicine ,Glycan ,Glycosylation ,Genomics ,Computational biology ,Biology ,Sialylation ,Biochemistry ,Glycomics ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Polysaccharides ,Genetics ,medicine ,Humans ,Precision Medicine ,Molecular Biology ,Fucosylation ,Glycoproteins ,Cancer ,Glycan Alteration ,Tumor ,business.industry ,Fucosylation and Personalized Medicine ,medicine.disease ,Glycome ,carbohydrates (lipids) ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,biology.protein ,Molecular Medicine ,Personalized medicine ,Glycoprotein ,business ,Biomarkers ,Biotechnology - Abstract
Cancer as the leading cause of death worldwide has many issues that still need to be addressed. Since the alterations on the glycan compositions or/and structures (i.e., glycosylation, sialylation, and fucosylation) are common features of tumorigenesis, glycomics becomes an emerging field examining the structure and function of glycans. In the past, cancer studies heavily relied on genomics and transcriptomics with relatively little exploration of the glycan alterations and glycoprotein biomarkers among individuals and populations. Since glycosylation of proteins increases their structural complexity by several orders of magnitude, glycome studies resulted in highly dynamic biomarkers that can be evaluated for cancer diagnosis, prognosis, and therapy. Glycome not only integrates our genetic background with past and present environmental factors but also offers a promise of more efficient patient stratification compared with genetic variations. Therefore, studying glycans holds great potential for better diagnostic markers as well as developing more efficient treatment strategies in human cancers. While recent developments in glycomics and associated technologies now offer new possibilities to achieve a high-throughput profiling of glycan diversity, we aim to give an overview of the current status of glycan research and the potential applications of the glycans in the scope of the personalized medicine strategies for cancer. WOS:000628899900003 33404348 Q2
- Published
- 2021
19. Author response for 'Human splenic polymorphonuclear myeloid‐derived suppressor cells (PMN‐MDSC) are strategically‐located immune regulatory cells in cancer'
- Author
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Busra Aydin, Hamdullah Yanik, Derya Karakoc, Safa K. Nural, Cenk Sokmensuer, Digdem Yoyen-Ermis, Aysegul Uner, Utku Horzum, Kerim Bora Yilmaz, Erhan Hamaloglu, Gunes Esendagli, and Ece Tavukcuoglu
- Subjects
Immune system ,Cancer research ,Myeloid-derived Suppressor Cell ,medicine ,Cancer ,Biology ,medicine.disease - Published
- 2020
20. Author response for 'Novel insights into diabetes mellitus due to <scp>DNAJC3</scp> ‐ defect:Evolution of neurological and endocrine phenotype in the pediatric age group'
- Author
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Ekim Taskiran, Mehmet Alikasifoglu, PelinOzlem Kiper, Gülen Eda Utine, Nesibe Gevher Eroglu‐Ertugrul, Kader Karli Oguz, Dilek Yalnizoglu, Goknur Haliloglu, Ayfer Alikasifoglu, E. Nazli Gonc, Nurgun Kandemir, Busra Aydin, Z. Alev Ozon, Beren Karaosmanoglu, and Nur Berna Celik
- Subjects
Pediatrics ,medicine.medical_specialty ,business.industry ,Diabetes mellitus ,Medicine ,Endocrine system ,Pediatric age ,DNAJC3 ,business ,medicine.disease ,Phenotype - Published
- 2020
21. Co-expression Network Analysis Elucidated a Core Module in Association With Prognosis of Non-functioning Non-invasive Human Pituitary Adenoma
- Author
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Kazim Yalcin Arga, Busra Aydin, Aydin, Busra, and Arga, Kazim Yalcin
- Subjects
0301 basic medicine ,DOWN-REGULATION ,non-functional pituitary adenoma ,Endocrinology, Diabetes and Metabolism ,invasiveness ,PROTEIN ,030209 endocrinology & metabolism ,ORGANIZATION ,Biology ,Bioinformatics ,medicine.disease_cause ,lcsh:Diseases of the endocrine glands. Clinical endocrinology ,CLASSIFICATION ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Pituitary adenoma ,medicine ,CEACAM6 ,Gene ,Original Research ,lcsh:RC648-665 ,Salivary gland ,IDENTIFICATION ,differential co-expression network ,Non invasive ,medicine.disease ,Phenotype ,CANCER ,TUMORS ,co-expression ,FAMILY ,030104 developmental biology ,medicine.anatomical_structure ,GENE-EXPRESSION PROFILES ,Biomarker (medicine) ,biomarker ,prognosis ,Carcinogenesis - Abstract
Non-functioning pituitary adenomas (NFPAs) are tumors with clinically challenging features since they have insidious progression. A complex network of gene interactions is thought to have roles in tumor formation and progression. Therefore, revealing the genetic network behind NFPA tumorigenesis is not only essential to attain further knowledge of tumor biology, but also plays a fundamental role in the development of efficacious treatment strategies. Differential co-expression network analysis is an outstanding approach for elucidation of groups of genes which show distinct co-expression patterns among phenotypes. In this study, we carried out a differential co-expression network analysis of NFPA-associated transcriptome dataset (n=40) considering invasive (n=22) and non-invasive (n=18) phenotypes. Furthermore, we identified differentially co-expressed and co-regulated mRNA modules, which might be considered as potential systems biomarkers for NFPA prognosis and invasiveness. As a result, we have identified a novel 13-gene module, including CEACAM6, CYP4B1, EIF2S2, HID1, IFFO1, MYO18A, PDCD2, SGIP1, SWSAP1 and four unknown genes (A_24_P127621, A_24_P255786, A_24_P683553, and A_24_P916979), which was able to categorize the patients into two groups as invasive and non-invasive NFPA with distinct prognosis. The prognostic core module genes were associated with progression and prognosis of brain and glandular based cancers as well. Furthermore, these module genes were also expressed in blood, salivary gland, and spinal cord tissues. These results may provide the evidence on featured gene module which might play a prominent role in NFPA prognosis and sub-typing as effective biomarkers and therapeutic targets in the future.
- Published
- 2019
22. MON-438 A Novel Insight into the Pathophysiology of Acromegalic Cardiomyopathy: Integrating Serum FSTL1 Levels and FSTL1 Polymorphisms with Cardiac MRI Findings
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Busra Aydin, Incilay Lay, Tomris Erbas, Mehmet Alikasifoglu, Suleyman Nahit Sendur, and Tuncay Hazirolan
- Subjects
medicine.medical_specialty ,Neuroendocrinology and Pituitary ,business.industry ,Endocrinology, Diabetes and Metabolism ,Internal medicine ,Cardiology ,medicine ,Cardiomyopathy ,business ,medicine.disease ,Mri findings ,Pathophysiology - Abstract
Background: Despite prolonged survival, the mortality rate of acromegalic patients is still higher. Cardiovascular disorders continue to be the most common cause of death. The exact pathophysiologic mechanisms of acromegalic cardiomyopathy (AC) remain to be established. In this study, we investigated the role of FSTL1 levels and FSTL1 gene polymorphisms on AC and assessed the functional and structural properties of cardiac muscle by cardiac MRI. Finally, we examined the relationship between FSTL1 levels, FSTL1 gene polymorphism and cardiac MRI findings. Materials and Methods: Forty-six acromegalic patients (28F/18M, age: 50.3±12.1 yrs) with a median disease duration of eight years and 81 age-sex matched healthy controls (48F/33M, age: 48.4±7.2 yrs) were included in the study. The rs1259293 region of the FSTL1 gene was subjected to polymorphism analysis. SNPs were identified (TT, TC and CC). A 1.5 Tesla scanner was used to obtain cardiac images. Results: The median serum IGF- 1 level and IGF-1 index were 232.5 ng/mL (50-1278) and 0.69 (0.17-3.1), respectively. Acromegalic patients had significantly lower levels of FSTL1 (median, IQR; A: 0.88, 0.44-2.13 ng/mL, C: 1.54, 0.85-3.16 ng/mL, p=0.04). FSTL1 levels were not different among polymorphism groups (TT, TC and CC). Left ventricular (LV) mass was increased in 18 patients (41%). In 20 acromegalic patients (45.4%), regional late gadolinium enhancement (LGE) was determined. Serum IGF-1 index was positively correlated with LV end-diastolic volume index, end-systolic volume index, stroke volume index, cardiac index and cardiac mass index; r: 0.36, 0.34, 0.32, 0.31 and 0.42, p: 0.02, 0.03, 0.03, 0.04 and 0.004 respectively. The IGF-1 index was defined as an independent risk factor for LV hypertrophy (95 % CI OR: 0.89-18.84); on the other hand, the CC polymorphism was shown to be an independent protective factor (95 % CI OR: 0.06-0.87). Discussion: Our study is the first study that assesses the role of serum FSTL1 levels and FSTL1 polymorphisms in AC. We found low FSTL1 levels in patients with acromegaly. FSTL-1 prevents hypertrophy in cardiomyocytes. In a previous report, homozygous deletion of FSTL1 in mice was shown to result in enlargement of heart. The relatively low abundance of FSTL1 in acromegalic patients could be an underlying mechanism for AC. Almost half of the acromegalic patients had increased LV mass and LGE. Contrary to the previous report, we show that LV hypertrophy and regional fibrosis are common findings in acromegaly. The IGF-1 index was found to be associated with hyperdynamic cardiac functions. Furthermore, we demonstrate that high IGF-1 index is an independent risk factor for increased LV mass. Finally, we revealed that the CC polymorphism is a protective factor against the LV mass increase. Conclusions: FSTL1 can have roles in the pathogenesis of AC. Specific polymorphism at the FSTL1 gene may prevent the growth of the LV.
- Published
- 2019
23. Integrative transcriptomics analysis of lung epithelial cells and identification of repurposable drug candidates for COVID-19
- Author
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Tania Islam, Busra Aydin, Kazim Yalcin Arga, Rezanur Rahman, Shahjaman, Hande Beklen, Islam, Tania, Rahman, Md Rezanur, Aydin, Busra, Beklen, Hande, Arga, Kazim Yalcin, and Shahjaman, Md
- Subjects
INFLUENZA-VIRUS ,0301 basic medicine ,RADICICOL ,ACTIVATION ,Transcriptome ,0302 clinical medicine ,SARS-CoV-2,transcriptomics ,INFECTION ,IMMUNE-RESPONSE ,Lung ,Cells, Cultured ,media_common ,SARS-CoV-2, transcriptomics ,DASATINIB ,Drug discovery ,INHIBITOR ,DABRAFENIB ,APOPTOSIS ,Drug repositioning ,Drug development ,ABUNDANCE ,Coronavirus Infections ,Signal Transduction ,medicine.drug ,Drug ,media_common.quotation_subject ,In silico ,Pneumonia, Viral ,Computational biology ,Biology ,Antiviral Agents ,03 medical and health sciences ,Full Length Article ,medicine ,Humans ,Computer Simulation ,Pandemics ,Pharmacology ,Drug Repositioning ,COVID-19 ,Computational Biology ,Epithelial Cells ,Dabrafenib ,030104 developmental biology ,Gene Expression Regulation ,Docking (molecular) ,030217 neurology & neurosurgery ,Transcription Factors - Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) disease, more commonly COVID-19 has emerged as a world health pandemic. There are couples of treatment methods for COVID-19, however, well-established drugs and vaccines are urgently needed to treat the COVID-19. The new drug discovery is a tremendous challenge; repurposing of existing drugs could shorten the time and expense compared with de novo drug development. In this study, we aimed to decode molecular signatures and pathways of the host cells in response to SARS-CoV-2 and the rapid identification of repurposable drugs using bioinformatics and network biology strategies. We have analyzed available transcriptomic RNA-seq COVID-19 data to identify differentially expressed genes (DEGs). We detected 177 DEGs specific for COVID-19 where 122 were upregulated and 55 were downregulated compared to control (FDR, Highlights • Molecular transcriptomes alterations of the lung epithelial cells in response to SARS-CoV-2 were detected. • Significant molecular pathways altered in COVID-19 revealed. • Hub proteins were detected as novel drug targets for COVID-19. • Molecular regulatory signatures were identified. • Repurposable drugs were identified for COVID-19.
- Published
- 2020
24. Determination of the BRAF V600E mutation prevalance at papillary thyroid carcinomas (PTCs) in Turkish population
- Author
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Busra Aydin, Nimet Karadayi, Serhat Özçelik, Hasret Cengiz, Sukran Sarikaya, Melike Ozcelik, Akin Dayan, Yasemin Tutuncu, Rifat Bircan, Hulya Iliksu Gozu, and Mehmet Celik
- Subjects
Thyroid carcinoma ,BRAF V600E ,Turkish population ,business.industry ,Mutation (genetic algorithm) ,Cancer research ,Prevalence ,Medicine ,business - Published
- 2018
25. The Genome-Based Metabolic Systems Engineering to Boost Levan Production in a Halophilic Bacterial Model
- Author
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Tugba Ozer, Kazim Yalcin Arga, Ebru Toksoy Oner, and Busra Aydin
- Subjects
0301 basic medicine ,Triparental mating ,In silico ,Microbial metabolism ,Biology ,Bacterial Physiological Phenomena ,Biochemistry ,Models, Biological ,Metabolic engineering ,03 medical and health sciences ,Gene Knockout Techniques ,Genetics ,Overproduction ,Molecular Biology ,Gene knockout ,Bacteria ,Computational Biology ,Molecular Sequence Annotation ,PEP group translocation ,Genomics ,Fructans ,030104 developmental biology ,Metabolic Engineering ,Bacterial Model ,Fermentation ,Mutation ,Systems engineering ,Molecular Medicine ,Genetic Engineering ,Genome, Bacterial ,Biotechnology - Abstract
Metabolic systems engineering is being used to redirect microbial metabolism for the overproduction of chemicals of interest with the aim of transforming microbial hosts into cellular factories. In this study, a genome-based metabolic systems engineering approach was designed and performed to improve biopolymer biosynthesis capability of a moderately halophilic bacterium Halomonas smyrnensis AAD6T producing levan, which is a fructose homopolymer with many potential uses in various industries and medicine. For this purpose, the genome-scale metabolic model for AAD6T was used to characterize the metabolic resource allocation, specifically to design metabolic engineering strategies for engineered bacteria with enhanced levan production capability. Simulations were performed in silico to determine optimal gene knockout strategies to develop new strains with enhanced levan production capability. The majority of the gene knockout strategies emphasized the vital role of the fructose uptake mechanism, and pointed out the fructose-specific phosphotransferase system (PTSfru) as the most promising target for further metabolic engineering studies. Therefore, the PTSfru of AAD6T was restructured with insertional mutagenesis and triparental mating techniques to construct a novel, engineered H. smyrnensis strain, BMA14. Fermentation experiments were carried out to demonstrate the high efficiency of the mutant strain BMA14 in terms of final levan concentration, sucrose consumption rate, and sucrose conversion efficiency, when compared to the AAD6T. The genome-based metabolic systems engineering approach presented in this study might be considered an efficient framework to redirect microbial metabolism for the overproduction of chemicals of interest, and the novel strain BMA14 might be considered a potential microbial cell factory for further studies aimed to design levan production processes with lower production costs.
- Published
- 2018
26. Uvular Edema Resulting from Use of Ecballium elaterium
- Author
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Reyhan Cetinkaya and Busra Aydin
- Subjects
Folk medicine ,biology ,Traditional medicine ,business.industry ,Symptomatic treatment ,Cucumber juice ,food and beverages ,030208 emergency & critical care medicine ,UVULAR EDEMA ,030204 cardiovascular system & hematology ,biology.organism_classification ,medicine.disease ,food.food ,Ecballium elaterium ,03 medical and health sciences ,Eastern mediterranean ,0302 clinical medicine ,food ,Medicine ,Fruit juice ,business ,Sinusitis - Abstract
Ecballium elaterium, common name squirting cucumber juice is used for the symptomatic treatment of rhinosinusitis in folk medicine. There are reports of allergic reactions of this plant in the literature. It has strong anti-inflammatory effect and people in the eastern Mediterranean region widely use this fruit juice for rhinitis and sinusitis. We presented a case of uvular edema caused by this plant.
- Published
- 2018
27. Adaptation and Testing of Cognitive Behavioral Therapy Resource of Turkish Version to Reduce Dental Anxiety in Children
- Author
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Aliye Tuğçe Gürcan, Elif Ayşe Tamtekin, Büşra Aydın, Gülce Esentürk, Buğra Özen, and Zoe Marshman
- Subjects
dental anxiety ,children ,cognitive behavioral therapy ,pediatric dentistry ,behavioral management ,Medicine ,Pediatrics ,RJ1-570 - Abstract
Aim:Dental anxiety is a common problem in pediatric dentistry and reducing it with improved communication is important. This study aimed to evaluate whether anxious children give similar answers in the dental office even though they have different cultural backgrounds and to assess the international usability of the cognitive behavioral therapy tool of the Turkish version of “Your Teeth You Are In Control” intervention including “Message to the Dentist” feedback form.Materials and Methods:Two hundred and sixty-two children aged 5-15 years attending a faculty clinic and a private dental office were included in this study. The children were asked to complete the form to report how worried they felt and the levels of pain they experienced before and after their dental treatment on a scale of 1-10 (1=the best and 10=the worst outcome). Statistical analysis was performed with IBM SPSS V23.Results:Most of the participants were worried about the needle, the dentist, and pain, respectively (38.2%, 34%, 28.2%). Most of the children raised their hand as a stop signal (94.7%). There was a statistically significant negative and weak correlation between age and anticipated pain, actual pain and anxiety scores (p=0.016, 0.003, 0.001 respectively).Conclusion:The “Message to the Dentist” feedback form and cognitive behavioral therapy resource can be used in pediatric dentistry to reduce dental anxiety in its Turkish version. It was useful to understand the sources of dental anxiety in children and this can facilitate treatment by helping pediatric dentists understand how these patients feel about dental treatment procedures and, via their efforts, to improve patient care.
- Published
- 2022
- Full Text
- View/download PDF
28. Metabolic Biomarkers and Neurodegeneration: A Pathway Enrichment Analysis of Alzheimer's Disease, Parkinson's Disease, and Amyotrophic Lateral Sclerosis
- Author
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Semra Unal, Medi Kori, Busra Aydin, Dilek Kazan, and Kazim Yalcin Arga
- Subjects
0301 basic medicine ,Parkinson's disease ,Disease ,Biology ,Creatine ,Bioinformatics ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Metabolomics ,Alzheimer Disease ,Genetics ,medicine ,Humans ,Amyotrophic lateral sclerosis ,Amino Acids ,Molecular Biology ,Creatinine ,Neurodegeneration ,Amyotrophic Lateral Sclerosis ,Computational Biology ,Parkinson Disease ,medicine.disease ,Lipid Metabolism ,Prognosis ,Body Fluids ,Metabolic pathway ,030104 developmental biology ,chemistry ,Molecular Medicine ,ATP-Binding Cassette Transporters ,030217 neurology & neurosurgery ,Biomarkers ,Metabolic Networks and Pathways ,Biotechnology - Abstract
Neurodegenerative diseases such as Alzheimer's disease (AD), Parkinson's disease (PD), and amyotrophic lateral sclerosis (ALS) lack robust diagnostics and prognostic biomarkers. Metabolomics is a postgenomics field that offers fresh insights for biomarkers of common complex as well as rare diseases. Using data on metabolite-disease associations published in the previous decade (2006-2016) in PubMed, ScienceDirect, Scopus, and Web of Science, we identified 101 metabolites as putative biomarkers for these three neurodegenerative diseases. Notably, uric acid, choline, creatine, L-glutamine, alanine, creatinine, and N-acetyl-L-aspartate were the shared metabolite signatures among the three diseases. The disease-metabolite-pathway associations pointed out the importance of membrane transport (through ATP binding cassette transporters), particularly of arginine and proline amino acids in all three neurodegenerative diseases. When disease-specific and common metabolic pathways were queried by using the pathway enrichment analyses, we found that alanine, aspartate, glutamate, and purine metabolism might act as alternative pathways to overcome inadequate glucose supply and energy crisis in neurodegeneration. These observations underscore the importance of metabolite-based biomarker research in deciphering the elusive pathophysiology of neurodegenerative diseases. Future research investments in metabolomics of complex diseases might provide new insights on AD, PD, and ALS that continue to place a significant burden on global health.
- Published
- 2016
29. Characterization of Quark-like probiotic cheese produced from a mixture of buffalo milk and cow milk
- Author
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Onur Guneser and Büşra Aydin
- Subjects
buffalo milk ,fresh cheese ,probiotic cultures ,volatile compounds ,sensory analysis ,Dairying ,SF221-250 - Abstract
The objective of the present study was to evaluate the potential application of buffalo milk in the production of Quark-like cheese enriched with probiotic cultures of Lactobacillus acidophilus and Lacticaseibacillus rhamnosus. Compositional, physicochemical, textural, aromatic, and sensory attributes of the cheese samples prepared using different ratios of buffalo milk and cow milk were investigated. The results revealed significant differences among the analysed cheese samples with respect to the dry matter, fat and protein content. The cheese samples prepared using only buffalo milk had the highest contents of dry matter, fat, and protein compared to the cheese samples prepared using only cow milk. Titratable acidity of the cheese samples was in the range of 0.91 to 1.52 (lactic acid %), while the water-soluble nitrogen content varied between 7.88% and 11.22% during storage. Increasing the proportion of cow milk in cheese caused an increase in the L* and Hue colour values. The cheese samples prepared from buffalo milk showed the highest value for hardness, while the lowest hardness value was observed for cheese samples prepared using cow milk. All cheese samples had higher levels of acetic acid, butanoic acid, 3-methyl butanoic acid, and hexanoic acid compared to other volatile compounds. L. acidophilus and L. rhamnosus counts during storage were in the range of 9.02-9.18 log CFU/g and 9.12-9.30 log CFU/g, respectively. The sour taste was determined to be dominant in all cheese samples, followed by the sweet taste. Creamy, cooked, and fermented flavours were the most prominent flavours in all cheese samples.
- Published
- 2022
30. Effect of TTNS and PNS on Neurogenic Overactive Bladder Symptoms in Female Patients With Multiple Sclerosis.
- Author
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Marmara University and Busra Aydin Erkilic, Physiotherapist
- Published
- 2024
31. Investigation of proprioceptive sense in team and individual athletes
- Author
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Emine Busra Aydin
- Subjects
Branch ,individual ,proprioception ,sport ,team ,Sports ,GV557-1198.995 - Abstract
Proprioception is important for both athletic success and the post-injury process. This study aims to examine the proprioceptive senses of team athletes and individual athletes in different branches. A total of 250 volunteer athletes from Ondokuz Mayıs University Faculty of Sports Sciences participated in the study. The athletes were selected from soccer, basketball, volleyball, handball, taekwondo, tennis, athletics and other individual branches (boxing, kickboxing, karate, wushu, muaythai). The mean age of the students was 20.44±1.73. In the study, dominant shoulder, non-dominant shoulder, dominant knee, and non-dominant knee proprioception measurements of the athletes were made. Since the data did not show a normal distribution, Kruskal Wallis test was used in comparisons between groups. Dunn’s multiple comparison test was used for subgroup comparisons. Mann Whitney U test was preferred for paired group comparisons. According to results proprioceptive sense is not differ according to gender (p>0.05). Dominant and non-dominant knee proprioceptive senses of team athletes were better than individual athletes (p0.05). Proprioceptive sense varies in athletes according to their branches.
- Published
- 2024
- Full Text
- View/download PDF
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