3,751 results on '"Burgener A"'
Search Results
2. Associations between Minority Health Social Vulnerability Index Scores, Rurality, and Histoplasmosis Incidence, 8 US States
- Author
-
Dallas J. Smith, Malavika Rajeev, Kristina Boyd, Kaitlin Benedict, Ian Hennessee, Laura Rothfeldt, Connie Austin, Mary-Elizabeth Steppig, Dimple Patel, Rebecca Reik, Malia Ireland, Judi Sedivy, Suzanne Gibbons-Burgener, Renee M. Calanan, Samantha L. Williams, Sarah Rockhill, and Mitsuru Toda
- Subjects
histoplasmosis ,fungi ,dimorphic fungi ,social vulnerability index ,health equity ,rural health ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
To explore associations between histoplasmosis and race and ethnicity, socioeconomic status, and rurality, we conducted an in-depth analysis of social determinants of health and histoplasmosis in 8 US states. Using the Minority Health Social Vulnerability Index (MH SVI), we analyzed county-level histoplasmosis incidence (cases/100,000 population) from the 8 states by applying generalized linear mixed hurdle models. We found that histoplasmosis incidence was higher in counties with limited healthcare infrastructure and access as measured by the MH SVI and in more rural counties. Other social determinants of health measured by the MH SVI tool either were not significantly or were inconsistently associated with histoplasmosis incidence. Increased awareness of histoplasmosis, more accessible diagnostic tests, and investment in rural health services could address histoplasmosis-related health disparities.
- Published
- 2024
- Full Text
- View/download PDF
3. Fatal tick-borne encephalitis virus infection in Dalmatian puppy-dogs after putative vector independent transmission
- Author
-
Kara L. D. Dawson, Giuliana Rosato, Simone Egloff, Carole Burgener, Anna Oevermann, Paula Grest, Monika Hilbe, and Torsten Seuberlich
- Subjects
Tick-borne encephalitis virus ,puppies ,metatranscriptomics ,high-throughput sequencing ,Veterinary medicine ,SF600-1100 - Abstract
AbstractIn a retrospective metatranscriptomics study, we identified tick-borne encephalitis virus (TBEV) to be the causative agent for a fatal non-suppurative meningoencephalitis in a three-week-old Dalmatian puppy in Switzerland. Further investigations showed that the two other littermates with similar signs and pathological lesions were also positive for TBEV. By using an unbiased approach of combining high-throughput sequencing (HTS) and bioinformatics we were able to solve the etiology and discover an unusual case of TBEV in three young puppies. Based on our findings, we suggest that a vector-independent transmission of TBEV occurred and that most likely an intrauterine infection led to the severe and fulminant disease of the entire litter. We were able to demonstrate the presence of TBEV RNA by in situ hybridization (ISH) in the brain of all three puppies. Furthermore, we were able to detect TBEV by RT-qPCR in total RNA extracted from formalin-fixed and paraffin embedded (FFPE) blocks containing multiple peripheral organs. Overall, our findings shed light on alternative vector-independent transmission routes of TBEV infections in dogs and encourage veterinary practitioners to consider TBEV as an important differential diagnosis in neurological cases in dogs.
- Published
- 2024
- Full Text
- View/download PDF
4. A matter of differentiation: equine enteroids as a model for the in vivo intestinal epithelium
- Author
-
Windhaber, Christina, Heckl, Anna, Csukovich, Georg, Pratscher, Barbara, Burgener, Iwan Anton, Biermann, Nora, and Dengler, Franziska
- Published
- 2024
- Full Text
- View/download PDF
5. Estradiol-mediated enhancement of the human ectocervical epithelial barrier correlates with desmoglein-1 expression in the follicular menstrual phase
- Author
-
Frideborg Bradley, Alexandra Stern, Mathias Franzén Boger, Zaynab Mousavian, Olga Dethlefsen, Vilde Kaldhusdal, Julie Lajoie, Kenneth Omollo, Sofia Bergström, Anna Månberg, Peter Nilsson, Joshua Kimani, Adam D. Burgener, Annelie Tjernlund, Christopher Sundling, Keith R. Fowke, and Kristina Broliden
- Subjects
estradiol ,progesterone ,desmoglein-1 ,ectocervix ,menstrual cycle ,protein marker ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundThe cervicovaginal epithelial barrier is crucial for defending the female reproductive tract against sexually transmitted infections. Hormones, specifically estradiol and progesterone, along with their respective receptor expressions, play an important role in modulating this barrier. However, the influence of estradiol and progesterone on gene and protein expression in the ectocervical mucosa of naturally cycling women is not well understood.MethodsMucosal and blood samples were collected from Kenyan female sex workers at high risk of sexually transmitted infections. All samples were obtained at two time points, separated by two weeks, aiming for the follicular and luteal phases of the menstrual cycle. Ectocervical tissue biopsies were analyzed by RNA-sequencing and in situ immunofluorescence staining, cervicovaginal lavage samples (CVL) were evaluated using protein profiling, and plasma samples were analyzed for hormone levels.ResultsUnsupervised clustering of RNA-sequencing data was performed using Weighted gene co-expression network analysis (WGCNA). In the follicular phase, estradiol levels positively correlated with a gene module representing epithelial structure and function, and negatively correlated with a gene module representing cell cycle regulation. These correlations were confirmed using regression analysis including adjustment for bacterial vaginosis status. Using WGCNA, no gene module correlated with progesterone levels in the follicular phase. In the luteal phase, no gene module correlated with either estradiol or progesterone levels. Protein profiling on CVL revealed that higher levels of estradiol during the follicular phase correlated with increased expression of epithelial barrier integrity markers, including DSG1. This contrasted to the limited correlations of protein expression with estradiol levels in the luteal phase. In situ imaging analysis confirmed that higher estradiol levels during the follicular phase correlated with increased DSG1 expression.ConclusionWe demonstrate that estradiol levels positively correlate with specific markers of ectocervical epithelial structure and function, particularly DSG1, during the follicular phase of the menstrual cycle. Neither progesterone levels during the follicular phase nor estradiol and progesterone levels during the luteal phase correlated with any specific sets of gene markers. These findings align with the expression of estradiol and progesterone receptors in the ectocervical epithelium during these menstrual phases.
- Published
- 2024
- Full Text
- View/download PDF
6. Cefepime versus carbapenems for treatment of AmpC beta-lactamase-producing Enterobacterales bloodstream infections
- Author
-
Herrmann, Julia, Burgener-Gasser, Anne-Valérie, Goldenberger, Daniel, Roth, Jan, Weisser, Maja, Tamma, Pranita D., and Tschudin-Sutter, Sarah
- Published
- 2024
- Full Text
- View/download PDF
7. A matter of differentiation: equine enteroids as a model for the in vivo intestinal epithelium
- Author
-
Christina Windhaber, Anna Heckl, Georg Csukovich, Barbara Pratscher, Iwan Anton Burgener, Nora Biermann, and Franziska Dengler
- Subjects
Organoid ,jejunum ,colon ,horse ,three-dimensional cell culture ,colonoid ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Epithelial damage due to gastrointestinal disorders frequently causes severe disease in horses. To study the underlying pathophysiological processes, we aimed to establish equine jejunum and colon enteroids (eqJE, eqCE) mimicking the in vivo epithelium. Therefore, enteroids were cultivated in four different media for differentiation and subsequently characterized histomorphologically, on mRNA and on protein level in comparison to the native epithelium of the same donor horses to identify ideal culture conditions for an in vitro model system. With increasing enterocyte differentiation, the enteroids showed a reduced growth rate as well as a predominantly spherical morphology and less budding compared to enteroids in proliferation medium. Combined or individual withdrawal of stem cell niche pathway components resulted in lower mRNA expression levels of stem cell markers and concomitant differentiation of enterocytes, goblet cells and enteroendocrine cells. For eqCE, withdrawal of Wnt alone was sufficient for the generation of differentiated enterocytes with a close resemblance to the in vivo epithelium. Combined removal of Wnt, R-spondin and Noggin and the addition of DAPT stimulated differentiation of eqJE at a similar level as the in vivo epithelium, particularly with regard to enterocytes. In summary, we successfully defined a medium composition that promotes the formation of eqJE and eqCE consisting of multiple cell types and resembling the in vivo epithelium. Our findings emphasize the importance of adapting culture conditions to the respective species and the intestinal segment. This in vitro model will be used to investigate the pathological mechanisms underlying equine gastrointestinal disorders in future studies.
- Published
- 2024
- Full Text
- View/download PDF
8. Monitoring mouse papillomavirus-associated cancer development using longitudinal Pap smear screening
- Author
-
Hannah M. Atkins, Aysegul Aksakal Uslu, Jingwei J. Li, Debra A. Shearer, Sarah A. Brendle, Chen Han, Michael Kozak, Paul Lopez, Deesha Nayar, Karla K. Balogh, Catherine Abendroth, Jean Copper, Keith C. Cheng, Neil D. Christensen, Yusheng Zhu, Stefanie Avril, Adam D. Burgener, Thomas T. Murooka, and Jiafen Hu
- Subjects
the mouse papillomavirus (MmuPV1) ,lower genital infection ,Pap smear ,LSIL ,HSIL ,squamous cell carcinoma ,Microbiology ,QR1-502 - Abstract
ABSTRACT A substantial percentage of the population remains at risk for cervical cancer due to pre-existing human papillomavirus (HPV) infections, despite prophylactic vaccines. Early diagnosis and treatment are crucial for better disease outcomes. The development of new treatments heavily relies on suitable preclinical model systems. Recently, we established a mouse papillomavirus (MmuPV1) model that is relevant to HPV genital pathogenesis. In the current study, we validated the use of Papanicolaou (Pap) smears, a valuable early diagnostic tool for detecting HPV cervical cancer, to monitor disease progression in the MmuPV1 mouse model. Biweekly cervicovaginal swabs were collected from the MmuPV1-infected mice for viral DNA quantitation and cytology assessment. The Pap smear slides were evaluated for signs of epithelial cell abnormalities using the 2014 Bethesda system criteria. Tissues from the infected mice were harvested at various times post-viral infection for additional histological and virological assays. Over time, increased viral replication was consistent with higher levels of viral DNA, and it coincided with an uptick in epithelial cell abnormalities with higher severity scores noted as early as 10 weeks after viral infection. The cytological results also correlated with the histological evaluation of tissues harvested simultaneously. Both immunocompromised and immunocompetent mice with squamous cell carcinoma (SCC) cytology also developed vaginal SCCs. Notably, samples from the MmuPV1-infected mice exhibited similar cellular abnormalities compared to the corresponding human samples at similar disease stages. Hence, Pap smear screening proves to be an effective tool for the longitudinal monitoring of disease progression in the MmuPV1 mouse model.IMPORTANCEPapanicolaou (Pap) smear has saved millions of women's lives as a valuable early screening tool for detecting human papillomavirus (HPV) cervical precancers and cancer. However, more than 200,000 women in the United States alone remain at risk for cervical cancer due to pre-existing HPV infection-induced precancers, as there are currently no effective treatments for HPV-associated precancers and cancers other than invasive procedures including a loop electrosurgical excision procedure (LEEP) to remove abnormal tissues. In the current study, we validated the use of Pap smears to monitor disease progression in our recently established mouse papillomavirus model. To the best of our knowledge, this is the first study that provides compelling evidence of applying Pap smears from cervicovaginal swabs to monitor disease progression in mice. This HPV-relevant cytology assay will enable us to develop and test novel antiviral and anti-tumor therapies using this model to eliminate HPV-associated diseases and cancers.
- Published
- 2024
- Full Text
- View/download PDF
9. Implications of hypocobalaminemia as a negative prognostic marker in juvenile dogs with parvovirus enteritis
- Author
-
Nicole Luckschander-Zeller, Bettina Giani, Pavlos G. Doulidis, Hanna D. Plickert, Alexander Tichy, Rodrig Marculescu, Ilse Schwendenwein, and Iwan A. Burgener
- Subjects
cobalamin (CBL) ,parvoviral enteritis ,canine ,methylmalonic acid ,outcome ,Veterinary medicine ,SF600-1100 - Abstract
IntroductionCanine Parvovirus 2 (CPV-2) infection poses a significant global health risk to susceptible dogs. Hypocobalaminemia, defined as reduced serum cobalamin (CBL) concentrations, is a recognized complication in chronic enteropathies in adult dogs but remains poorly understood in the context of acute enteropathies, especially in young dogs. The aim of this study was to investigate the frequency and severity of hypocobalaminemia in young dogs with parvovirus enteritis and evaluation of CBL as a predictor of outcome.Materials and methodsThirty client-owned dogs diagnosed with parvovirus infection and thirty healthy controls were enrolled. Clinical, hematological, and biochemical tests, including CBL and serum methylmalonic acid (MMA) concentrations, were assessed.ResultsResults indicated a significantly higher prevalence of hypocobalaminemia in dogs with parvovirus enteritis compared to healthy controls, as well as a significant correlation with a disease severity score. Moreover, survivors demonstrated higher CBL concentrations than non-survivors, suggesting an eventual prognostic value of CBL status. However, parenteral CBL supplementation showed no significant effect on serum CBL or MMA concentrations, highlighting potential challenges in CBL uptake at the cellular level.DiscussionHypocobalaminemia in this population is caused by multiple factors such as reduced nutritional absorption, gastrointestinal losses, and increased metabolic demands. Further research is needed to develop tailored management strategies, evaluate the effectiveness of CBL supplementation, and understand the mechanisms behind hypocobalaminemia in parvovirus infection.
- Published
- 2024
- Full Text
- View/download PDF
10. Translocating bacteria in SIV infection are not stochastic and preferentially express cytosine methyltransferases
- Author
-
Flynn, Jacob K., Ortiz, Alexandra M., Vujkovic-Cvijin, Ivan, Welles, Hugh C., Simpson, Jennifer, Castello Casta, Fabiola M., Yee, Debra S., Rahmberg, Andrew R., Brooks, Kelsie L., De Leon, Marlon, Knodel, Samantha, Birse, Kenzie, Noel-Romas, Laura, Deewan, Anshu, Belkaid, Yasmine, Burgener, Adam, and Brenchley, Jason M.
- Published
- 2024
- Full Text
- View/download PDF
11. Immunologic and Genetic Contributors to CD46-Dependent Immune Dysregulation
- Author
-
Meyer, Benedikt J, Kunz, Natalia, Seki, Sayuri, Higgins, Rebecca, Ghosh, Adhideb, Hupfer, Robin, Baldrich, Adrian, Hirsiger, Julia R, Jauch, Annaïse J, Burgener, Anne-Valérie, Lötscher, Jonas, Aschwanden, Markus, Dickenmann, Michael, Stegert, Mihaela, Berger, Christoph T, Daikeler, Thomas, Heijnen, Ingmar, Navarini, Alexander A, Rudin, Christoph, Yamamoto, Hiroyuki, Kemper, Claudia, Hess, Christoph, and Recher, Mike
- Published
- 2023
- Full Text
- View/download PDF
12. A Description of the THRIVE (The Study of Host-Bacterial Relationships and Immune Function in Different Vaginal Environments) Bacterial Vaginosis Observational Study
- Author
-
Berard, Alicia R., Knodel, Samantha, Zuend, Christina Farr, Noël-Romas, Laura, Birse, Kenzie D., McQueen, Peter, De Leon, Marlon, Kratzer, Kateryna, Taylor, Oluwatobiloba A., Bailey, Samantha, Pymar, Helen, Burgener, Adam D., and Poliquin, Vanessa
- Published
- 2024
- Full Text
- View/download PDF
13. Characterizing variability in geochemistry and mineralogy of western US dust sources
- Author
-
Mangum, Abby L., Carling, Gregory T., Bickmore, Barry R., Webb, Nicholas, Leifi, DeTiare L., Brahney, Janice, Fernandez, Diego P., Rey, Kevin A., Nelson, Stephen T., Burgener, Landon, LeMonte, Joshua J., Thompson, Alyssa N., Newingham, Beth A., Duniway, Michael C., and Aanderud, Zachary T.
- Published
- 2024
- Full Text
- View/download PDF
14. Nontuberculous mycobacterial infection in Wisconsin children and adolescents
- Author
-
Vonasek, Bryan J., Gusland, Danièle, Tans-Kersten, Julie, Misch, Elizabeth A., and Gibbons-Burgener, Suzanne N.
- Published
- 2024
- Full Text
- View/download PDF
15. Immunophenotype investigation in feline intestinal non-B-cell lymphoma
- Author
-
Wolfesberger, Birgitt, Gradner, Gabriele, Rütgen, Barbara C., Hittmair, Katharina M., Walter, Ingrid, Donovan, Taryn A., Kleiter, Miriam, Krischak, Alexander, Burgener, Iwan A., and Fuchs-Baumgartinger, Andrea
- Published
- 2024
- Full Text
- View/download PDF
16. Increased genital mucosal cytokines in Canadian women associate with higher antigen-presenting cells, inflammatory metabolites, epithelial barrier disruption, and the depletion of L. crispatus
- Author
-
Farr Zuend, Christina, Lamont, Alana, Noel-Romas, Laura, Knodel, Samantha, Birse, Kenzie, Kratzer, Kateryna, McQueen, Peter, Perner, Michelle, Ayele, Hossaena, Mutch, Sarah, Berard, Alicia R., Schellenberg, John J., Senturk, Faruk, McCorrister, Stuart, Westmacott, Garrett, Mulhall, Fran, Sandberg, Bonnie, Yu, Adelicia, Burnett, Margaret, Poliquin, Vanessa, and Burgener, Adam D.
- Published
- 2023
- Full Text
- View/download PDF
17. Mass spectrometry analysis of gut tissue in acute SIV-infection in rhesus macaques identifies early proteome alterations preceding the interferon inflammatory response
- Author
-
Berard, A. R., Hensley-McBain, T., Noël-Romas, L., Birse, K., Abou, M., Westmacott, G., McCorrister, S., Smedley, J., Klatt, Nichole R., and Burgener, Adam D.
- Published
- 2023
- Full Text
- View/download PDF
18. Copper intrauterine device increases vaginal concentrations of inflammatory anaerobes and depletes lactobacilli compared to hormonal options in a randomized trial
- Author
-
Brown, Bryan P., Feng, Colin, Tanko, Ramla F., Jaumdally, Shameem Z., Bunjun, Rubina, Dabee, Smritee, Happel, Anna-Ursula, Gasper, Melanie, Nyangahu, Donald D., Onono, Maricianah, Nair, Gonasagrie, Palanee-Phillips, Thesla, Scoville, Caitlin W., Heller, Kate, Baeten, Jared M., Bosinger, Steven E., Burgener, Adam, Passmore, Jo-Ann S., Heffron, Renee, and Jaspan, Heather B.
- Published
- 2023
- Full Text
- View/download PDF
19. Gut microbiome signatures of Yorkshire Terrier enteropathy during disease and remission
- Author
-
Doulidis, Pavlos G., Galler, Alexandra I., Hausmann, Bela, Berry, David, Rodríguez-Rojas, Alexandro, and Burgener, Iwan A.
- Published
- 2023
- Full Text
- View/download PDF
20. Characterization of the plasma proteome from healthy adult dogs
- Author
-
Pavlos G. Doulidis, Benno Kuropka, Carolina Frizzo Ramos, Alexandro Rodríguez-Rojas, and Iwan A. Burgener
- Subjects
plasma proteomics ,mass-spectrometry ,canine ,veterinary medicine ,biomarker ,Veterinary medicine ,SF600-1100 - Abstract
IntroductionBloodwork is a widely used diagnostic tool in veterinary medicine, as diagnosis and therapeutic interventions often rely on blood biomarkers. However, biomarkers available in veterinary medicine often lack sensitivity or specificity. Mass spectrometry-based proteomics technology has been extensively used in the analysis of biological fluids. It offers excellent potential for a more comprehensive characterization of the plasma proteome in veterinary medicine.MethodsIn this study, we aimed to identify and quantify plasma proteins in a cohort of healthy dogs and compare two techniques for depleting high-abundance plasma proteins to enable the detection of lower-abundance proteins via label-free quantification liquid chromatography-mass spectrometry. We utilized surplus lithium-heparin plasma from 30 healthy dogs, subdivided into five groups of pooled plasma from 6 randomly selected individuals each. Firstly, we used a commercial kit to deplete high-abundance plasma proteins. Secondly, we employed an in-house method to remove albumin using Blue-Sepharose.Results and discussionAmong all the samples, some of the most abundant proteins identified were apolipoprotein A and B, albumin, alpha-2-macroglobulin, fibrinogen beta chain, fibronectin, complement C3, serotransferrin, and coagulation factor V. However, neither of the depletion techniques achieved significant depletion of highly abundant proteins. Despite this limitation, we could detect and quantify many clinically relevant proteins. Determining the healthy canine proteome is a crucial first step in establishing a reference proteome for canine plasma. After enrichment, this reference proteome can later be utilized to identify protein markers associated with different diseases, thereby contributing to the diagnosis and prognosis of various pathologies.
- Published
- 2024
- Full Text
- View/download PDF
21. Gut-derived bacterial toxins impair memory CD4 T-cell mitochondrial function in HIV-1 infection
- Author
-
Ferrari, Brian, Da Silva, Amanda Cabral, Liu, Ken H, Saidakova, Evgeniya V, Korolevskaya, Larisa B, Shmagel, Konstantin V, Shive, Carey, Sanchez, Gabriela Pacheco, Retuerto, Mauricio, Sharma, Ashish Arunkumar, Ghneim, Khader, Noel-Romas, Laura, Rodriguez, Benigno, Ghannoum, Mahmoud A, Hunt, Peter P, Deeks, Steven G, Burgener, Adam D, Jones, Dean P, Dobre, Mirela A, Marconi, Vincent C, Sekaly, Rafick-Pierre, and Younes, Souheil-Antoine
- Subjects
Medical Microbiology ,Biomedical and Clinical Sciences ,Immunology ,Infectious Diseases ,HIV/AIDS ,Infection ,Bacterial Toxins ,CD4 Lymphocyte Count ,CD4-Positive T-Lymphocytes ,HIV Infections ,HIV-1 ,Humans ,Lymphopenia ,Mitochondria ,AIDS/HIV ,Apoptosis ,Infectious disease ,T cell development ,Medical and Health Sciences ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
People living with HIV (PLWH) who are immune nonresponders (INRs) are at greater risk of comorbidity and mortality than are immune responders (IRs) who restore their CD4+ T cell count after antiretroviral therapy (ART). INRs have low CD4+ T cell counts (
- Published
- 2022
22. The Intricacies of Inflammatory Bowel Disease: A Preliminary Study of Redox Biology in Intestinal Organoids
- Author
-
Georg Csukovich, Janina Huainig, Selina Troester, Barbara Pratscher, and Iwan Anton Burgener
- Subjects
intestinal organoid ,redox biology ,IBD ,glutathione ,oxidative stress ,ROS ,Cytology ,QH573-671 - Abstract
We evaluated the redox status, precisely glutathione levels, which have a major impact in cellular detoxification and antioxidant defence in IBD-derived and healthy intestinal organoids. Therefore, we wanted to explore the differences in terms of their redox balance and mitochondrial fitness. To this end, we introduced a Grx1-roGFP2 construct into the organoids by lentiviral transduction before performing a stress assay by treating the organoids with hydrogen peroxide and examined the GSH/GSSG ratio using confocal imaging. Using ratio imaging, we could detect statistically significant differences between healthy and IBD-derived samples. To gain more insight, we also performed a GSH/GSSG assay, which directly measured glutathione levels. This analysis revealed that both organoid lines had higher levels of oxidized glutathione due to the stress treatment demonstrated by a lower GSH/GSSG ratio compared to the untreated control. Nevertheless, the results showed no significant difference between healthy and IBD-derived organoids. We further challenged organoids with hydrogen peroxide after incubation with MitoTracker® to see if mitochondrial fitness might be different in IBD-derived organoids. However, these results were also very comparable. In summary, our preliminary findings indicate that both organoid lines demonstrate a well-functioning system in terms of analysis but show no clear difference between healthy and IBD-derived samples.
- Published
- 2023
- Full Text
- View/download PDF
23. Update on the Impact of Depot Medroxyprogesterone Acetate on Vaginal Mucosal Endpoints and Relevance to Sexually Transmitted Infections
- Author
-
Dabee, Smritee, Balle, Christina, Onono, Maricianah, Innes, Steve, Nair, Gonasagrie, Palanee-Phillips, Thesla, Burgener, Adam D., Bosinger, Steven E., Passmore, Jo-Ann S., Heffron, Renee, Jaspan, Heather, and Happel, Anna-Ursula
- Published
- 2023
- Full Text
- View/download PDF
24. Short-term glycemic variability in non-diabetic, non-obese dogs assessed by common glycemic variability indices
- Author
-
Urbanschitz, Tobias, Huber, Lukas, Tichy, Alexander, Burgener, Iwan Anton, and Zeugswetter, Florian Karl
- Published
- 2024
- Full Text
- View/download PDF
25. Highly effective cystic fibrosis transmembrane conductance (regulator) modulator therapy: shifting the curve for most while leaving some further behind
- Author
-
Chun, Stanford W., Somers, Maya E., and Burgener, Elizabeth B.
- Published
- 2024
- Full Text
- View/download PDF
26. Clinical validation of a tissue-agnostic genome-wide methylome enrichment molecular residual disease assay for head and neck malignancies
- Author
-
Liu, G., Huang, S.H., Ailles, L., Rey-McIntyre, K., Melton, C.A., Shen, S.Y., Burgener, J.M., Brown, B., Zhang, J., Min, J., Wang, Y., Hall, O., Jones, J.T., Budhraja, K., Provance, J.B., Sosa, E.V., Licon, A., Williams, A., Bratman, S.V., Allen, B.A., Hartman, A.-R., and De Carvalho, D.D.
- Published
- 2024
- Full Text
- View/download PDF
27. Increased genital mucosal cytokines in Canadian women associate with higher antigen-presenting cells, inflammatory metabolites, epithelial barrier disruption, and the depletion of L. crispatus
- Author
-
Christina Farr Zuend, Alana Lamont, Laura Noel-Romas, Samantha Knodel, Kenzie Birse, Kateryna Kratzer, Peter McQueen, Michelle Perner, Hossaena Ayele, Sarah Mutch, Alicia R. Berard, John J. Schellenberg, Faruk Senturk, Stuart McCorrister, Garrett Westmacott, Fran Mulhall, Bonnie Sandberg, Adelicia Yu, Margaret Burnett, Vanessa Poliquin, and Adam D. Burgener
- Subjects
Inflammation ,Antigen-presenting cells ,Microbiome ,Metaproteome ,Metabolome ,Microbial ecology ,QR100-130 - Abstract
Abstract Background Cervicovaginal inflammation has been linked to negative reproductive health outcomes including the acquisition of HIV, other sexually transmitted infections, and cervical carcinogenesis. While changes to the vaginal microbiome have been linked to genital inflammation, the molecular relationships between the functional components of the microbiome with cervical immunology in the reproductive tract are understudied, limiting our understanding of mucosal biology that may be important for reproductive health. Results In this study, we used a multi’-omics approach to profile cervicovaginal samples collected from 43 Canadian women to characterize host, immune, functional microbiome, and metabolome features of cervicovaginal inflammation. We demonstrate that inflammation is associated with lower amounts of L. crispatus and higher levels of cervical antigen-presenting cells (APCs). Proteomic analysis showed an upregulation of pathways related to neutrophil degranulation, complement, and leukocyte migration, with lower levels of cornified envelope and cell-cell adherens junctions. Functional microbiome analysis showed reductions in carbohydrate metabolism and lactic acid, with increases in xanthine and other metabolites. Bayesian network analysis linked L. crispatus with glycolytic and nucleotide metabolism, succinate and xanthine, and epithelial proteins SCEL and IVL as major molecular features associated with pro-inflammatory cytokines and increased APCs. Conclusions This study identified key molecular and immunological relationships with cervicovaginal inflammation, including higher APCs, bacterial metabolism, and proteome alterations that underlie inflammation. As APCs are involved in HIV transmission, parturition, and cervical cancer progression, further studies are needed to explore the interactions between these cells, bacterial metabolism, mucosal immunity, and their relationship to reproductive health. Video Abstract
- Published
- 2023
- Full Text
- View/download PDF
28. Formerly bile-farmed bears as a model of accelerated ageing
- Author
-
Szilvia K. Kalogeropoulu, Hanna Rauch-Schmücking, Emily J. Lloyd, Peter Stenvinkel, Paul G. Shiels, Richard J. Johnson, Ole Fröbert, Irene Redtenbacher, Iwan A. Burgener, and Johanna Painer-Gigler
- Subjects
Medicine ,Science - Abstract
Abstract Bear bile-farming is common in East and Southeast Asia and this farming practice often results in irreversible health outcomes for the animals. We studied long-term effects of chronic bacterial and sterile hepatobiliary inflammation in 42 Asiatic black bears (Ursus thibetanus) rescued from Vietnamese bile farms. The bears were examined under anesthesia at least twice as part of essential medical interventions. All bears were diagnosed with chronic low-grade sterile or bacterial hepatobiliary inflammation along with pathologies from other systems. Our main finding was that the chronic low-grade inflammatory environment associated with bile extraction in conjunction with the suboptimal living conditions on the farms promoted and accelerated the development of age-related pathologies such as chronic kidney disease, obese sarcopenia, cardiovascular remodeling, and degenerative joint disease. Through a biomimetic approach, we identified similarities with inflammation related to premature aging in humans and found significant deviations from the healthy ursid phenotype. The pathological parallels with inflammageing and immuno-senescence induced conditions in humans suggest that bile-farmed bears may serve as animal models to investigate pathophysiology and deleterious effects of lifestyle-related diseases.
- Published
- 2023
- Full Text
- View/download PDF
29. The Broadway Shalom Wellness Center: Reaching Traditionally Difficult-To-Access Inner City Population
- Author
-
Burgener, Sandy C., primary
- Published
- 2023
- Full Text
- View/download PDF
30. Assessing the rationale of prescribing carbapenems among hospitalized patients with documented penicillin allergy: implications for stewardship
- Author
-
Anne-Valérie Burgener-Gasser, Jeanne Fasel, Delia Halbeisen, Karin Hartmann, Maja Weisser-Rohacek, Carole Kaufmann, and Sarah Tschudin-Sutter
- Subjects
Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background: A reported history of penicillin allergy frequently leads to the prescription of carbapenems as a substitute for penicillin to avoid allergic reactions. Such self-reported allergies need to be accurately characterized to identify targeted antibiotic stewardship interventions that potentially minimize unnecessary carbapenem use. Design: Retrospective cohort study. Method: The proportion of hospitalized patients with penicillin allergy history receiving carbapenem prescriptions was evaluated between January 1st, 2017 and December 31st, 2018 at the University Hospital Basel, Switzerland. The appropriateness of carbapenem prescription of each patient was evaluated using institutional guidelines based on previously published recommendations. Results: Our analysis revealed that among 212 patients with recorded penicillin allergy, of the 247 carbapenem treatment episodes, 79 (32%) were unjustified. Abdominal and lower respiratory tract infections were most frequently associated with inappropriate carbapenem use (OR 2.64, 95% CI 1.22–5.71, P = .014 and OR 2.26, 95% CI 1.08–4.73, P = .031). The recorded allergy type was not documented or unclear in 153 patients (72%) and penicillin allergy was only confirmed in 2 patients (0.9%). Inconsistencies in allergic symptom documentation and allergy types were found between the institution’s two software programs. Conclusion: While a multimodal approach to identify and accurately label penicillin allergies remains essential to reduce inappropriate carbapenem use, our findings highlight the need for comprehensive and easily accessible guidelines for carbapenem utilization and structured history-based allergy assessment as an initial screening tool, embedded in a tailored digital allergy record template.
- Published
- 2024
- Full Text
- View/download PDF
31. Plasma proteome signature of canine acute haemorrhagic diarrhoea syndrome (AHDS).
- Author
-
Lukas Huber, Benno Kuropka, Pavlos G Doulidis, Elisabeth Baszler, Lukas Martin, Anda Rosu, Lisa Kulmer, Carolina Frizzo Ramos, Alexandro Rodríguez-Rojas, and Iwan A Burgener
- Subjects
Medicine ,Science - Abstract
Acute haemorrhagic diarrhoea is a common complaint in dogs. In addition to causes like intestinal parasites, dietary indiscretion, intestinal foreign bodies, canine parvovirus infection, or hypoadrenocorticism, acute haemorrhagic diarrhoea syndrome (AHDS) is an important and sometimes life-threatening differential diagnosis. There is some evidence supporting the link between Clostridium perfringens toxins and AHDS. These toxins may be partially responsible for the epithelial cell injury, but the pathogenesis of AHDS is still not fully understood. Recent studies have suggested that severe damage to the intestinal mucosa and associated barrier dysfunction can trigger chronic gastrointestinal illnesses. Besides bloodwork and classical markers for AHDS such as protein loss and intestinal bacterial dysbiosis, we focused mainly on the plasma-proteome to identify systemic pathological alterations during this disease and searched for potential biomarkers to improve the diagnosis. To accomplish the goals, we used liquid chromatography-mass spectrometry. We compared the proteomic profiles of 20 dogs with AHDS to 20 age-, breed-, and sex-matched control dogs. All dogs were examined, and several blood work parameters were determined and compared, including plasma biochemistry and cell counts. We identified and quantified (relative quantification) 207 plasmatic proteins, from which dozens showed significantly altered levels in AHDS. Serpina3, Lipopolysaccharide-binding protein, several Ig-like domain-containing proteins, Glyceraldehyde-3-phosphate dehydrogenase and Serum amyloid A were more abundant in plasma from AHDS affected dogs. In contrast, other proteins such as Paraoxonase, Selenoprotein, Amine oxidases, and Apolipoprotein C-IV were significantly less abundant. Many of the identified and quantified proteins are known to be associated with inflammation. Other proteins like Serpina3 and RPLP1 have a relevant role in oncogenesis. Some proteins and their roles have not yet been described in dogs with diarrhoea. Our study opens new avenues that could contribute to the understanding of the aetiology and pathophysiology of AHDS.
- Published
- 2024
- Full Text
- View/download PDF
32. A polymer-based technique to remove pollutants from soft contact lenses
- Author
-
Burgener, Katherine and Bhamla, M. Saad
- Subjects
Condensed Matter - Soft Condensed Matter ,Physics - Applied Physics - Abstract
Purpose: To demonstrate an alternative to the rinse and rub (RR) method for cleaning pollutants from the exterior surface of soft contact lenses. This proposed technique is termed Polymer on Polymer Pollutant Removal (PoPPR), which utilizes the elastic properties of polydimethylsiloxane (PDMS) to physically remove contaminants from contact lens surfaces through non-adhesive unpeeling. Methods: Three different ratios of setting agent to polymer PDMS (1:30, 1:40, and 1:50) were evaluated using the PoPPR method against the control method of RR with a commercial multi-purpose lens cleaning solution. Three simulated pollutants of different sizes: pollen (25-40 {\mu}m), microbeads (1-5 {\mu}m), and nanoparticles (5-10 nm), were used to test the effectiveness of both cleaning methods. The fraction of pollutants removed from each contact lens was recorded and evaluated for significance. Results: PDMS 1:40 was found to be the optimal ratio for lens cleaning using the PoPPR method. For larger particles (>10 {\mu}m), no difference was observed between conventional RR and proposed PoPPR method (p > 0.05). However, the new PoPPR technique was significantly better at removing small PM2.5 particles (<2.5 {\mu}m) compared to the RR method, specifically for microbeads (p = 0.006) and nanoparticles (p < 0.001). Conclusion: This proof-of-concept work demonstrates that the PoPPR method of cleaning contact lenses is as effective as the conventional cleaning method for larger particles such as pollen. The PoPPR method is more effective at removing extremely fine particulate pollutants, including microplastics and nanoparticles. This method offers a potentially more efficient cleaning protocol that could enhance the safety, health, and comfort of contact lens users, especially those living in regions with significant air pollution.
- Published
- 2020
- Full Text
- View/download PDF
33. InterCarb: A Community Effort to Improve Interlaboratory Standardization of the Carbonate Clumped Isotope Thermometer Using Carbonate Standards.
- Author
-
Bernasconi, SM, Daëron, M, Bergmann, KD, Bonifacie, M, Meckler, AN, Affek, HP, Anderson, N, Bajnai, D, Barkan, E, Beverly, E, Blamart, D, Burgener, L, Calmels, D, Chaduteau, C, Clog, M, Davidheiser-Kroll, B, Davies, A, Dux, F, Eiler, J, Elliott, B, Fetrow, AC, Fiebig, J, Goldberg, S, Hermoso, M, Huntington, KW, Hyland, E, Ingalls, M, Jaggi, M, John, CM, Jost, AB, Katz, S, Kelson, J, Kluge, T, Kocken, IJ, Laskar, A, Leutert, TJ, Liang, D, Lucarelli, J, Mackey, TJ, Mangenot, X, Meinicke, N, Modestou, SE, Müller, IA, Murray, S, Neary, A, Packard, N, Passey, BH, Pelletier, E, Petersen, S, Piasecki, A, Schauer, A, Snell, KE, Swart, PK, Tripati, A, Upadhyay, D, Vennemann, T, Winkelstern, I, Yarian, D, Yoshida, N, Zhang, N, and Ziegler, M
- Subjects
carbonate ,clumped isotopes ,interlaboratory calibration ,mass spectrometry ,reference materials ,Physical Sciences ,Earth Sciences ,Geochemistry & Geophysics - Abstract
Increased use and improved methodology of carbonate clumped isotope thermometry has greatly enhanced our ability to interrogate a suite of Earth-system processes. However, interlaboratory discrepancies in quantifying carbonate clumped isotope (Δ47) measurements persist, and their specific sources remain unclear. To address interlaboratory differences, we first provide consensus values from the clumped isotope community for four carbonate standards relative to heated and equilibrated gases with 1,819 individual analyses from 10 laboratories. Then we analyzed the four carbonate standards along with three additional standards, spanning a broad range of δ47 and Δ47 values, for a total of 5,329 analyses on 25 individual mass spectrometers from 22 different laboratories. Treating three of the materials as known standards and the other four as unknowns, we find that the use of carbonate reference materials is a robust method for standardization that yields interlaboratory discrepancies entirely consistent with intralaboratory analytical uncertainties. Carbonate reference materials, along with measurement and data processing practices described herein, provide the carbonate clumped isotope community with a robust approach to achieve interlaboratory agreement as we continue to use and improve this powerful geochemical tool. We propose that carbonate clumped isotope data normalized to the carbonate reference materials described in this publication should be reported as Δ47 (I-CDES) values for Intercarb-Carbon Dioxide Equilibrium Scale.
- Published
- 2021
34. Semen-mediated enhancement of HIV infection is donor-dependent and correlates with the levels of SEVI
- Author
-
Hahn Beatrice H, Dejucq-Rainsford Nathalie, Burgener Adam, Forssmann Wolf-Georg, Staendker Ludger, Roan Nadia R, Zirafi Onofrio, Yolamanova Maral, Kim Kyeong-Ae, Shaw George M, Greene Warner C, Kirchhoff Frank, and Münch Jan
- Subjects
Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background HIV-1 is usually transmitted in the presence of semen. We have shown that semen boosts HIV-1 infection and contains fragments of prostatic acid phosphatase (PAP) forming amyloid aggregates termed SEVI (semen-derived enhancer of viral infection) that promote virion attachment to target cells. Despite its importance for the global spread of HIV-1, however, the effect of semen on virus infection is controversial. Results Here, we established methods allowing the meaningful analysis of semen by minimizing its cytotoxic effects and partly recapitulating the conditions encountered during sexual HIV-1 transmission. We show that semen rapidly and effectively enhances the infectivity of HIV-1, HIV-2, and SIV. This enhancement occurs independently of the viral genotype and coreceptor tropism as well as the virus producer and target cell type. Semen-mediated enhancement of HIV-1 infection was also observed under acidic pH conditions and in the presence of vaginal fluid. We further show that the potency of semen in boosting HIV-1 infection is donor dependent and correlates with the levels of SEVI. Conclusions Our results show that semen strongly enhances the infectivity of HIV-1 and other primate lentiviruses and that SEVI contributes to this effect. Thus, SEVI may play an important role in the sexual transmission of HIV-1 and addition of SEVI inhibitors to microbicides may improve their efficacy.
- Published
- 2010
- Full Text
- View/download PDF
35. Gut microbiome signatures of Yorkshire Terrier enteropathy during disease and remission
- Author
-
Pavlos G. Doulidis, Alexandra I. Galler, Bela Hausmann, David Berry, Alexandro Rodríguez-Rojas, and Iwan A. Burgener
- Subjects
Medicine ,Science - Abstract
Abstract The role of the gut microbiome in developing Inflammatory Bowel Disease (IBD) in humans and dogs has received attention in recent years. Evidence suggests that IBD is associated with alterations in gut microbial composition, but further research is needed in veterinary medicine. The impact of IBD treatment on the gut microbiome needs to be better understood, especially in a breed-specific form of IBD in Yorkshire Terriers known as Yorkshire Terrier Enteropathy (YTE). This study aimed to investigate the difference in gut microbiome composition between YTE dogs during disease and remission and healthy Yorkshire Terriers. Our results showed a significant increase in specific taxa such as Clostridium sensu stricto 1, Escherichia-Shigella, and Streptococcus, and a decrease in Bacteroides, Prevotella, Alloprevotella, and Phascolarctobacterium in YTE dogs compared to healthy controls. No significant difference was found between the microbiome of dogs in remission and those with active disease, suggesting that the gut microbiome is affected beyond clinical recovery.
- Published
- 2023
- Full Text
- View/download PDF
36. Systems analysis reveals differential expression of endocervical genes in African women randomized to DMPA-IM, LNG implant or cu-IUD
- Author
-
Gupta, Prachi Mehrotra, Balle, Christina, Tharp, Gregory K., Nelson, Sydney A., Gasper, Melanie A., Brown, Bryan, Alisoltani, Arghavan, Onono, Maricianah, Palanee-Phillips, Thesla, Nair, Gonsagrie, Ayele, Hosseana, Noel-Romas, Laura, Passmore, Jo-Ann S., Burgener, Adam D., Heffron, Renee, Jaspan, Heather B., and Bosinger, Steven E.
- Published
- 2023
- Full Text
- View/download PDF
37. The neovaginal microbiome of transgender women post-gender reassignment surgery
- Author
-
Birse, Kenzie D, Kratzer, Kateryna, Zuend, Christina Farr, Mutch, Sarah, Noël-Romas, Laura, Lamont, Alana, Abou, Max, Jalil, Emilia, Veloso, Valdiléa, Grinsztejn, Beatriz, Friedman, Ruth Khalili, Broliden, Kristina, Bradley, Frideborg, Poliquin, Vanessa, Li, Fan, Yanavich, Carolyn, Burgener, Adam, and Aldrovandi, Grace
- Subjects
Digestive Diseases ,Good Health and Well Being ,Adult ,Bacteria ,Female ,Humans ,Male ,Microbiota ,Middle Aged ,Sex Reassignment Surgery ,Transgender Persons ,Vagina ,Transgender women ,Neovagina ,Gender reassignment surgery ,Microbiome ,Metaproteomics ,Ecology ,Microbiology ,Medical Microbiology - Abstract
BackgroundGender reassignment surgery is a procedure some transgender women (TW) undergo for gender-affirming purposes. This often includes the construction of a neovagina using existing penile and scrotal tissue and/or a sigmoid colon graft. There are limited data regarding the composition and function of the neovaginal microbiome representing a major gap in knowledge in neovaginal health.ResultsMetaproteomics was performed on secretions collected from the neovaginas (n = 5) and rectums (n = 7) of TW surgically reassigned via penile inversion/scrotal graft with (n = 1) or without (n = 4) a sigmoid colon graft extension and compared with secretions from cis vaginas (n = 32). We identified 541 unique bacterial proteins from 38 taxa. The most abundant taxa in the neovaginas were Porphyromonas (30.2%), Peptostreptococcus (9.2%), Prevotella (9.0%), Mobiluncus (8.0%), and Jonquetella (7.2%), while cis vaginas were primarily Lactobacillus and Gardnerella. Rectal samples were mainly composed of Prevotella and Roseburia. Neovaginas (median Shannon's H index = 1.33) had higher alpha diversity compared to cis vaginas (Shannon's H = 0.35) (p = 7.2E-3, Mann-Whitney U test) and were more similar to the non-Lactobacillus dominant/polymicrobial cis vaginas based on beta diversity (perMANOVA, p = 0.001, r2 = 0.342). In comparison to cis vaginas, toll-like receptor response, amino acid, and short-chain fatty acid metabolic pathways were increased (p < 0.01), while keratinization and cornification proteins were decreased (p < 0.001) in the neovaginal proteome.ConclusionsPenile skin-lined neovaginas have diverse, polymicrobial communities that show similarities in composition to uncircumcised penises and host responses to cis vaginas with bacterial vaginosis (BV) including increased immune activation pathways and decreased epithelial barrier function. Developing a better understanding of microbiome-associated inflammation in the neovaginal environment will be important for improving our knowledge of neovaginal health. Video Abstract.
- Published
- 2020
38. Prion Seeding Activity in Plant Tissues Detected by RT-QuIC
- Author
-
Kate Burgener, Stuart Siegfried Lichtenberg, Daniel P. Walsh, Heather N. Inzalaco, Aaron Lomax, and Joel A. Pedersen
- Subjects
prions ,plants ,chronic wasting disease ,real-time quaking induced conversion ,seeded amplification ,environmental transmission ,Medicine - Abstract
Prion diseases such as scrapie, bovine spongiform encephalopathy (BSE), and chronic wasting disease (CWD) affect domesticated and wild herbivorous mammals. Animals afflicted with CWD, the transmissible spongiform encephalopathy of cervids (deer, elk, and moose), shed prions into the environment, where they may persist and remain infectious for years. These environmental prions may remain in soil, be transported in surface waters, or assimilated into plants. Environmental sampling is an emerging area of TSE research and can provide more information about prion fate and transport once shed by infected animals. In this study, we have developed the first published method for the extraction and detection of prions in plant tissue using the real-time quaking-induced conversion (RT-QuIC) assay. Incubation with a zwitterionic surfactant followed by precipitation with sodium phosphotungstate concentrates the prions within samples and allows for sensitive detection of prion seeding activity. Using this protocol, we demonstrate that prions can be detected within plant tissues and on plant surfaces using the RT-QuIC assay.
- Published
- 2024
- Full Text
- View/download PDF
39. Pregnancy associates with alterations to the host and microbial proteome in vaginal mucosa
- Author
-
Zuend, Christina Farr, Tobin, Nicole H, Vera, Trisha, Kotyrba, Lani, Noël‐Romas, Laura, Birse, Kenzie, Mutch, Sarah, Li, Fan, Lee, David, McCorrister, Stuart, Westmacott, Garrett, Aldrovandi, Grace M, and Burgener, Adam D
- Subjects
Reproductive Medicine ,Biomedical and Clinical Sciences ,HIV/AIDS ,Pediatric ,Pediatric Research Initiative ,2.1 Biological and endogenous factors ,Aetiology ,Infection ,Reproductive health and childbirth ,Adolescent ,Adult ,Energy Metabolism ,Female ,Humans ,Lactobacillus ,Mass Spectrometry ,Microbiota ,Middle Aged ,Mucous Membrane ,Pregnancy ,Proteome ,Vagina ,Young Adult ,HIV ,microbiome ,pregnancy ,proteomics - Abstract
ProblemPregnant women are at increased risk of HIV acquisition, but the biological mechanisms contributing to this observation are not well understood.Method of studyHere, we assessed host immune and microbiome differences in the vaginal mucosa of healthy pregnant and non-pregnant women using a metaproteomics approach. Cervicovaginal lavage (CVL) samples were collected from 23 pregnant and 25 non-pregnant women.ResultsMass spectrometry analysis of CVL identified 550 human proteins and 376 bacterial proteins from 11 genera. Host proteome analysis indicated 56 human proteins (10%) were differentially abundant (P
- Published
- 2020
40. Pregnancy associates with alterations to the host and microbial proteome in vaginal mucosa.
- Author
-
Farr Zuend, Christina, Tobin, Nicole H, Vera, Trisha, Kotyrba, Lani, Noël-Romas, Laura, Birse, Kenzie, Mutch, Sarah, Li, Fan, Lee, David, McCorrister, Stuart, Westmacott, Garrett, Aldrovandi, Grace M, and Burgener, Adam D
- Subjects
Vagina ,Mucous Membrane ,Humans ,Lactobacillus ,Proteome ,Energy Metabolism ,Pregnancy ,Adolescent ,Adult ,Middle Aged ,Female ,Mass Spectrometry ,Young Adult ,Microbiota ,HIV ,microbiome ,pregnancy ,proteomics ,Obstetrics & Reproductive Medicine ,Clinical Sciences ,Immunology ,Paediatrics and Reproductive Medicine - Abstract
ProblemPregnant women are at increased risk of HIV acquisition, but the biological mechanisms contributing to this observation are not well understood.Method of studyHere, we assessed host immune and microbiome differences in the vaginal mucosa of healthy pregnant and non-pregnant women using a metaproteomics approach. Cervicovaginal lavage (CVL) samples were collected from 23 pregnant and 25 non-pregnant women.ResultsMass spectrometry analysis of CVL identified 550 human proteins and 376 bacterial proteins from 11 genera. Host proteome analysis indicated 56 human proteins (10%) were differentially abundant (P
- Published
- 2020
41. Copper intrauterine device increases vaginal concentrations of inflammatory anaerobes and depletes lactobacilli compared to hormonal options in a randomized trial
- Author
-
Bryan P. Brown, Colin Feng, Ramla F. Tanko, Shameem Z. Jaumdally, Rubina Bunjun, Smritee Dabee, Anna-Ursula Happel, Melanie Gasper, Donald D. Nyangahu, Maricianah Onono, Gonasagrie Nair, Thesla Palanee-Phillips, Caitlin W. Scoville, Kate Heller, Jared M. Baeten, Steven E. Bosinger, Adam Burgener, Jo-Ann S. Passmore, Renee Heffron, and Heather B. Jaspan
- Subjects
Science - Abstract
Here, in a randomized trial, the authors comparatively evaluate the effect of a copper intrauterine device versus other contraceptive options on the vaginal environment after one and six consecutive months of use, finding to exert changes on the vaginal microbiota that may potentially lead to detrimental sex and reproductive health.
- Published
- 2023
- Full Text
- View/download PDF
42. Mass spectrometry analysis of gut tissue in acute SIV-infection in rhesus macaques identifies early proteome alterations preceding the interferon inflammatory response
- Author
-
A. R. Berard, T. Hensley-McBain, L. Noël-Romas, K. Birse, M. Abou, G. Westmacott, S. McCorrister, J. Smedley, Nichole R. Klatt, and Adam D. Burgener
- Subjects
Medicine ,Science - Abstract
Abstract HIV infection damages the gut mucosa leading to chronic immune activation, increased morbidities and mortality, and antiretroviral therapies, do not completely ameliorate mucosal dysfunction. Understanding early molecular changes in acute infection may identify new biomarkers underlying gut dysfunction. Here we utilized a proteomics approach, coupled with flow cytometry, to characterize early molecular and immunological alterations during acute SIV infection in gut tissue of rhesus macaques. Gut tissue biopsies were obtained at 2 times pre-infection and 4 times post-infection from 6 macaques. The tissue proteome was analyzed by mass spectrometry, and immune cell populations in tissue and blood by flow cytometry. Significant proteome changes (p
- Published
- 2023
- Full Text
- View/download PDF
43. Surveillance for Coccidioidomycosis, Histoplasmosis, and Blastomycosis During the COVID-19 Pandemic--United States, 2019-2021
- Author
-
Williams, Samantha L., Smith, Dallas J., Benedict, Kaitlin, Ahlers, Jamie R., Austin, Connie, Birn, Rachael, Carter, Angel M., Christophe, Natalie N., Cibulskas, Katie, Cieslak, Paul R., Gibbons-Burgener, Suzanne N., Gosciminski, Michael, Ireland, Malia J., Lazenby, Katelyn V., Loftus, Tom, Lunquest, Kristy, Mathewson, Abby A., Nguyen, Alyssa D., Oltean, Hanna N., Osborn, BreAnne, Petro, Erin M., Power, Danny J., Reik, Rebecca R., Schlosser, Levi, Sedivy, Judi, Smelser, Chad B., Chiller, Tom, and Toda, Mitsuru
- Subjects
United States. Department of Health and Human Services -- Analysis ,Epidemics -- Development and progression ,Bacterial pneumonia -- Development and progression ,Mycoses -- Development and progression ,Health care industry -- Analysis -- Health aspects ,Pneumonia -- Development and progression ,Public health -- Analysis -- Health aspects ,Health care industry ,Health - Abstract
Introduction Coccidioidomycosis, histoplasmosis, and blastomycosis are fungal infections that cause illness with primarily respiratory presentation ranging from mild symptoms to severe pulmonary or disseminated disease. The causative fungi live in [...]
- Published
- 2024
44. Vaginal epithelial dysfunction is mediated by the microbiome, metabolome, and mTOR signaling
- Author
-
Berard, Alicia R., Brubaker, Douglas K., Birse, Kenzie, Lamont, Alana, Mackelprang, Romel D., Noël-Romas, Laura, Perner, Michelle, Hou, Xuanlin, Irungu, Elizabeth, Mugo, Nelly, Knodel, Samantha, Muwonge, Timothy R., Katabira, Elly, Hughes, Sean M., Levy, Claire, Calienes, Fernanda L., Lauffenburger, Douglas A., Baeten, Jared M., Celum, Connie, Hladik, Florian, Lingappa, Jairam, and Burgener, Adam D.
- Published
- 2023
- Full Text
- View/download PDF
45. Cretaceous climates: Mapping paleo-Köppen climatic zones using a Bayesian statistical analysis of lithologic, paleontologic, and geochemical proxies
- Author
-
Burgener, Landon, Hyland, Ethan, Reich, Brian J., and Scotese, Christopher
- Published
- 2023
- Full Text
- View/download PDF
46. Dysregulation of intestinal epithelial electrolyte transport in canine chronic inflammatory enteropathy and the role of the renin-angiotensin-aldosterone-system
- Author
-
Franziska Dengler, Oliver Domenig, Stefanie Kather, Iwan A. Burgener, Joerg M. Steiner, and Romy M. Heilmann
- Subjects
diarrhea ,dog ,inflammatory bowel disease ,intestinal epithelial transport ,mRNA expression ,mass spectrometry ,Veterinary medicine ,SF600-1100 - Abstract
Chronic diarrhea is a hallmark sign of canine chronic inflammatory enteropathy (CIE), leading to fluid and electrolyte losses. Electrolyte homeostasis is regulated by the renin-angiotensin-aldosterone-system (RAAS), which might be involved in (counter-)regulating electrolyte losses in canine CIE. Whether and which electrolyte transporters are affected or if RAAS is activated in canine CIE is unknown. Thus, intestinal electrolyte transporters and components of the RAAS were investigated in dogs with CIE. Serum RAAS fingerprint analysis by mass spectrometry was performed in 5 CIE dogs and 5 healthy controls, and mRNA levels of intestinal electrolyte transporters and local RAAS pathway components were quantified by RT-qPCR in tissue biopsies from the ileum (7 CIE, 10 controls) and colon (6 CIE, 12 controls). Concentrations of RAAS components and mRNA expression of electrolyte transporters were compared between both groups of dogs and were tested for associations among each other. In dogs with CIE, associations with clinical variables were also tested. Components of traditional and alternative RAAS pathways were higher in dogs with CIE than in healthy controls, with statistical significance for Ang I, Ang II, and Ang 1–7 (all p
- Published
- 2023
- Full Text
- View/download PDF
47. Time to eRAASe chronic inflammation: current advances and future perspectives on renin-angiotensin-aldosterone-system and chronic intestinal inflammation in dogs and humans
- Author
-
Romy M. Heilmann, Georg Csukovich, Iwan A. Burgener, and Franziska Dengler
- Subjects
alternative RAAS ,chronic inflammatory enteropathy ,inflammatory bowel disease ,electrolyte transport ,enteroids ,tight junctions ,Veterinary medicine ,SF600-1100 - Abstract
Chronic idiopathic intestinal inflammation is an increasing worldwide problem that affects companion animals, especially dogs, and human patients. Although these disease entities have been intensely investigated recently, many questions remain, and alternative therapeutic options are needed. Diarrhea caused by dysregulation of intestinal electrolyte transport and subsequent fluid and electrolyte losses often leads to secondary consequences for the patient. Currently, it is not exactly clear which mechanisms are involved in the dysregulation of intestinal fluid absorption, but differences in intestinal electrolyte shifts between human and canine patients suggest species-specific regulatory or counterregulatory mechanisms. Several intestinal electrolyte transporters are differentially expressed in human patients with inflammatory bowel disease (IBD), whereas there are virtually no studies on electrolyte transporters and their endocrine regulation in canine chronic inflammatory enteropathy. An important mechanism involved in regulating fluid and electrolyte homeostasis is the renin-angiotensin-aldosterone-system (RAAS), which may affect intestinal Na+ transport. While RAAS has previously been considered a systemic regulator of blood pressure, additional complex roles of RAAS in inflammatory processes have been unraveled. These alternative RAAS pathways may pose attractive therapeutic targets to address diarrhea and, thus, electrolyte shifts in human IBD and canine chronic inflammatory enteropathy. This article comparatively summarizes the current knowledge about electrolyte transport in human IBD and canine chronic inflammatory enteropathy and the role of RAAS and offers perspectives for novel therapeutic avenues.
- Published
- 2023
- Full Text
- View/download PDF
48. The Role of New Morphological Parameters Provided by the BC 6800 Plus Analyzer in the Early Diagnosis of Sepsis
- Author
-
Sara Sacchetti, Matteo Vidali, Teresa Esposito, Stefano Zorzi, Alessia Burgener, Lorenzo Ciccarello, Gianmaria Cammarota, Valentina Zanotti, Luca Giacomini, Mattia Bellan, Mario Pirisi, Ramon Simon Lopez, Umberto Dianzani, Rosanna Vaschetto, and Roberta Rolla
- Subjects
affordable health care ,early diagnosis ,leukocyte parameters ,morphological changes ,Red Cell Distribution Width (RDW) ,sepsis ,Medicine (General) ,R5-920 - Abstract
Background: Late diagnosis of sepsis is associated with adverse consequences and high mortality rate. The aim of this study was to evaluate the diagnostic value of hematologic research parameters, that reflect the cell morphology of blood cells, available on the BC 6800 plus automated analyzer (Mindray) for the early detection of sepsis. Materials and Methods: A complete blood count (CBC) was performed by Mindray BC 6800 Plus Analyzer in 327 patients (223 with a confirmed diagnosis of sepsis following sepsis-3 criteria, 104 without sepsis), admitted at the Intensive Care Unit of the Novara’s Hospital (Italy) and in 56 patients with localized infection. Results: In univariate logistic regression, age, Hb, RDW, MO#, NMR, NeuX, NeuY, NeuZ, LymX, MonX, MonY, MonZ were associated with sepsis (p < 0.005). In multivariate analysis, only RDW, NeuX, NeuY, NeuZ, MonX and MonZ were found to be independent predictors of sepsis (p < 0.005). Morphological research parameters are confirmed to be predictors of sepsis even when analyzing the group with localized infection. Conclusions: In addition to already established biomarkers and basic CBC parameters, new morphological cell parameters can be a valuable aid in the early diagnosis of sepsis at no additional cost.
- Published
- 2024
- Full Text
- View/download PDF
49. Traces of Canine Inflammatory Bowel Disease Reflected by Intestinal Organoids
- Author
-
Barbara Pratscher, Benno Kuropka, Georg Csukovich, Pavlos G. Doulidis, Katrin Spirk, Nina Kramer, Patricia Freund, Alexandro Rodríguez-Rojas, and Iwan A. Burgener
- Subjects
canine IBD ,IBD ,inflammatory bowel diseases ,organoid ,chronic enteropathy ,disease modeling ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Inflammatory bowel disease (IBD) is a chronic inflammatory condition that affects humans and several domestic animal species, including cats and dogs. In this study, we have analyzed duodenal organoids derived from canine IBD patients using quantitative proteomics. Our objective was to investigate whether these organoids show phenotypic traits of the disease compared with control organoids obtained from healthy donors. To this aim, IBD and control organoids were subjected to quantitative proteomics analysis via liquid chromatography–mass spectrometry. The obtained data revealed notable differences between the two groups. The IBD organoids exhibited several alterations at the levels of multiple proteins that are consistent with some known IBD alterations. The observed phenotype in the IBD organoids to some degree mirrors the corresponding intestinal condition, rendering them a compelling approach for investigating the disease and advancing drug exploration. Additionally, our study revealed similarities to some human IBD biomarkers, further emphasizing the translational and comparative value of dogs for future investigations related to the causes and treatment of IBD. Relevant proteins such as CALU, FLNA, MSN and HMGA2, which are related to intestinal diseases, were all upregulated in the IBD duodenal organoids. At the same time, other proteins such as intestinal keratins and the mucosal immunity PIGR were depleted in these IBD organoids. Based on these findings, we propose that these organoids could serve as a valuable tool for evaluating the efficacy of therapeutic interventions against canine IBD.
- Published
- 2024
- Full Text
- View/download PDF
50. The Inovirus Pf4 Triggers Antiviral Responses and Disrupts the Proliferation of Airway Basal Epithelial Cells
- Author
-
Medeea C. Popescu, Naomi L. Haddock, Elizabeth B. Burgener, Laura S. Rojas-Hernandez, Gernot Kaber, Aviv Hargil, Paul L. Bollyky, and Carlos E. Milla
- Subjects
inovirus ,Pf4 ,Pseudomonas ,cystic fibrosis ,basal epithelial cells ,Microbiology ,QR1-502 - Abstract
Background: The inovirus Pf4 is a lysogenic bacteriophage of Pseudomonas aeruginosa (Pa). People with Cystic Fibrosis (pwCF) experience chronic airway infection with Pa and a significant proportion have high numbers of Pf4 in their airway secretions. Given the known severe damage in the airways of Pa-infected pwCF, we hypothesized a high Pf4 burden can affect airway healing and inflammatory responses. In the airway, basal epithelial cells (BCs) are a multipotent stem cell population critical to epithelium homeostasis and repair. We sought to investigate the transcriptional responses of BCs under conditions that emulate infection with Pa and exposure to high Pf4 burden. Methods: Primary BCs isolated from pwCF and wild-type (WT) donors were cultured in vitro and exposed to Pf4 or bacterial Lipopolysaccharide (LPS) followed by transcriptomic and functional assays. Results: We found that BCs internalized Pf4 and this elicits a strong antiviral response as well as neutrophil chemokine production. Further, we found that BCs that take up Pf4 demonstrate defective migration and proliferation. Conclusions: Our findings are highly suggestive of Pf4 playing a role in the pathogenicity of Pa in the airways. These findings provide additional evidence for the ability of inoviruses to interact with mammalian cells and disrupt cell function.
- Published
- 2024
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.