102 results on '"Budny B"'
Search Results
2. X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes
- Author
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Hu, H, Haas, S A, Chelly, J, Van Esch, H, Raynaud, M, de Brouwer, A PM, Weinert, S, Froyen, G, Frints, S GM, Laumonnier, F, Zemojtel, T, Love, M I, Richard, H, Emde, A-K, Bienek, M, Jensen, C, Hambrock, M, Fischer, U, Langnick, C, Feldkamp, M, Wissink-Lindhout, W, Lebrun, N, Castelnau, L, Rucci, J, Montjean, R, Dorseuil, O, Billuart, P, Stuhlmann, T, Shaw, M, Corbett, M A, Gardner, A, Willis-Owen, S, Tan, C, Friend, K L, Belet, S, van Roozendaal, K EP, Jimenez-Pocquet, M, Moizard, M-P, Ronce, N, Sun, R, OʼKeeffe, S, Chenna, R, van Bömmel, A, Göke, J, Hackett, A, Field, M, Christie, L, Boyle, J, Haan, E, Nelson, J, Turner, G, Baynam, G, Gillessen-Kaesbach, G, Müller, U, Steinberger, D, Budny, B, Badura-Stronka, M, Latos-Bieleńska, A, Ousager, L B, Wieacker, P, Criado, G Rodríguez, Bondeson, M-L, Annerén, G, Dufke, A, Cohen, M, Van Maldergem, L, Vincent-Delorme, C, Echenne, B, Simon-Bouy, B, Kleefstra, T, Willemsen, M, Fryns, J-P, Devriendt, K, Ullmann, R, Vingron, M, Wrogemann, K, Wienker, T F, Tzschach, A, van Bokhoven, H, Gecz, J, Jentsch, T J, Chen, W, Ropers, H-H, and Kalscheuer, V M
- Published
- 2016
- Full Text
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3. A novelGJA1 missense mutation in a Polish child with oculodentodigital dysplasia
- Author
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Jamsheer, A., Wiśniewska, M., Szpak, A., Bugaj, G., Krawczyński, M. R., Budny, B., Wawrocka, A., and Latos-Bieleńska, A.
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- 2009
- Full Text
- View/download PDF
4. Novel missense mutations in the ubiquitination-related gene UBE2A cause a recognizable X-linked mental retardation syndrome
- Author
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Budny, B, Badura-Stronka, M, Materna-Kiryluk, A, Tzschach, A, Raynaud, M, Latos-Bielenska, A, and Ropers, H H
- Published
- 2010
- Full Text
- View/download PDF
5. A novel nonsense mutation in CUL4B gene in three brothers with X-linked mental retardation syndrome
- Author
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Badura-Stronka, M, Jamsheer, A, Materna-Kiryluk, A, Sowińska, A, Kiryluk, K, Budny, B, and Latos-Bieleńska, A
- Published
- 2010
- Full Text
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6. Principles of induction chemotherapy for non-small cell lung cancer
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Jabłonka, St, Furmanik, F, Jabłonka, A, Paprota, K, Karczmarek-Borowska, B, Kukiełka-Budny, B, Korobowicz, E, Zdunek, M, and Sagan, D
- Published
- 2001
- Full Text
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7. Multi-layered mode structure of locked-tearing-modes after unlocking
- Author
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Okabayashi M., Logan N., Tobias B., Wang Z., Budny B., Nazikian R., Strait E., La Haye R., Paz-Soldan C.J., Ferraro N., Shiraki D., Hanson J., Zanca P., and Paccagnella R.
- Subjects
Physics::Plasma Physics ,Physics::Space Physics - Abstract
Prevention of m/n=2/1 tearing modes (TM) by electro-magnetic torque injection has been successful in DIII-D and RFX-mod where plasma conditions and plasma shape are completely different [1]. Understanding the internal structure in the post-unlocked phase is a pre-requisite to its application to reactor relevant plasmas such as in ITER. Ti and toroidal rotation perturbations show there exist several radially different TM layers. However, the phase shift between the applied field and the plasma response is rather small from plasma edge to the q~3 domain, indicating that a kink-like response prevails. The biggest threat for sustaining an unlocked 2/1 mode is sudden distortion of the rotational profile due to the internal mode reconnection. Possible TM layer structure will be discussed with numerical MHD codes and TRANSP.
- Published
- 2015
8. X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes
- Author
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Hu, H., Haas, S. A., Chelly, J., Van Esch, H., Raynaud, M., de Brouwer, A. P. M., Weinert, S., Froyen, G., Frints, S. G. M., Laumonnier, F., Zemojtel, T., Love, M. I., Richard, H., Emde, A-K, Bienek, M., Jensen, C., Hambrock, M., Fischer, U., Langnick, C., Feldkamp, M., Wissink-Lindhout, W., Lebrun, N., Castelnau, L., Rucci, J., Montjean, R., Dorseuil, O., Billuart, P., Stuhlmann, T., Shaw, M., Corbett, M. A., Gardner, A., Willis-Owen, S., Tan, C., Friend, K. L., Belet, S., van Roozendaal, K. E. P., Jimenez-Pocquet, M., Moizard, M-P, Ronce, N., Sun, R., O'Keeffe, S., Chenna, R., Van Boemmel, A., Goeke, J., Hackett, A., Field, M., Christie, L., Boyle, J., Haan, E., Nelson, J., Turner, G., Baynam, G., Gillessen-Kaesbach, G., Mueller, U., Steinberger, D., Budny, B., Badura-Stronka, M., Latos-Bielenska, A., Ousager, L. B., Wieacker, P., Criado, G. Rodriguez, Bondeson, Marie-Louise, Annerén, Göran, Dufke, A., Cohen, M., Van Maldergem, L., Vincent-Delorme, C., Echenne, B., Simon-Bouy, B., Kleefstra, T., Willemsen, M., Fryns, J-P, Devriendt, K., Ullmann, R., Vingron, M., Wrogemann, K., Wienker, T. F., Tzschach, A., van Bokhoven, H., Gecz, J., Jentsch, T. J., Chen, W., Ropers, H-H, Kalscheuer, V. M., Hu, H., Haas, S. A., Chelly, J., Van Esch, H., Raynaud, M., de Brouwer, A. P. M., Weinert, S., Froyen, G., Frints, S. G. M., Laumonnier, F., Zemojtel, T., Love, M. I., Richard, H., Emde, A-K, Bienek, M., Jensen, C., Hambrock, M., Fischer, U., Langnick, C., Feldkamp, M., Wissink-Lindhout, W., Lebrun, N., Castelnau, L., Rucci, J., Montjean, R., Dorseuil, O., Billuart, P., Stuhlmann, T., Shaw, M., Corbett, M. A., Gardner, A., Willis-Owen, S., Tan, C., Friend, K. L., Belet, S., van Roozendaal, K. E. P., Jimenez-Pocquet, M., Moizard, M-P, Ronce, N., Sun, R., O'Keeffe, S., Chenna, R., Van Boemmel, A., Goeke, J., Hackett, A., Field, M., Christie, L., Boyle, J., Haan, E., Nelson, J., Turner, G., Baynam, G., Gillessen-Kaesbach, G., Mueller, U., Steinberger, D., Budny, B., Badura-Stronka, M., Latos-Bielenska, A., Ousager, L. B., Wieacker, P., Criado, G. Rodriguez, Bondeson, Marie-Louise, Annerén, Göran, Dufke, A., Cohen, M., Van Maldergem, L., Vincent-Delorme, C., Echenne, B., Simon-Bouy, B., Kleefstra, T., Willemsen, M., Fryns, J-P, Devriendt, K., Ullmann, R., Vingron, M., Wrogemann, K., Wienker, T. F., Tzschach, A., van Bokhoven, H., Gecz, J., Jentsch, T. J., Chen, W., Ropers, H-H, and Kalscheuer, V. M.
- Abstract
X-linked intellectual disability (XLID) is a clinically and genetically heterogeneous disorder. During the past two decades in excess of 100 X-chromosome ID genes have been identified. Yet, a large number of families mapping to the X-chromosome remained unresolved suggesting that more XLID genes or loci are yet to be identified. Here, we have investigated 405 unresolved families with XLID. We employed massively parallel sequencing of all X-chromosome exons in the index males. The majority of these males were previously tested negative for copy number variations and for mutations in a subset of known XLID genes by Sanger sequencing. In total, 745 X-chromosomal genes were screened. After stringent filtering, a total of 1297 non-recurrent exonic variants remained for prioritization. Co-segregation analysis of potential clinically relevant changes revealed that 80 families (20%) carried pathogenic variants in established XLID genes. In 19 families, we detected likely causative protein truncating and missense variants in 7 novel and validated XLID genes (CLCN4, CNKSR2, FRMPD4, KLHL15, LAS1L, RLIM and USP27X) and potentially deleterious variants in 2 novel candidate XLID genes (CDK16 and TAF1). We show that the CLCN4 and CNKSR2 variants impair protein functions as indicated by electrophysiological studies and altered differentiation of cultured primary neurons from Clcn4(-/-) mice or after mRNA knock-down. The newly identified and candidate XLID proteins belong to pathways and networks with established roles in cognitive function and intellectual disability in particular. We suggest that systematic sequencing of all X-chromosomal genes in a cohort of patients with genetic evidence for X-chromosome locus involvement may resolve up to 58% of Fragile X-negative cases.
- Published
- 2016
- Full Text
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9. Increased STAG2 dosage defines a novel cohesinopathy with intellectual disability and behavioral problems
- Author
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Kumar, R., Corbett, M.A., Bon, B.W.M. van, Gardner, A., Woenig, J.A., Jolly, L.A., Douglas, E., Friend, K., Tan, C., Esch, H. Van, Holvoet, M., Raynaud, M., Field, M., Leffler, M., Budny, B., Wisniewska, M., Badura-Stronka, M., Latos-Bielenska, A., Batanian, J., Rosenfeld, J.A., Basel-Vanagaite, L., Jensen, C., Bienek, M., Froyen, G., Ullmann, R., Hu, H, Love, M.I., Haas, S.A., Stankiewicz, P., Cheung, S.W., Baxendale, A., Nicholl, J., Thompson, E.M., Haan, E., Kalscheuer, V.M., Gecz, J., Kumar, R., Corbett, M.A., Bon, B.W.M. van, Gardner, A., Woenig, J.A., Jolly, L.A., Douglas, E., Friend, K., Tan, C., Esch, H. Van, Holvoet, M., Raynaud, M., Field, M., Leffler, M., Budny, B., Wisniewska, M., Badura-Stronka, M., Latos-Bielenska, A., Batanian, J., Rosenfeld, J.A., Basel-Vanagaite, L., Jensen, C., Bienek, M., Froyen, G., Ullmann, R., Hu, H, Love, M.I., Haas, S.A., Stankiewicz, P., Cheung, S.W., Baxendale, A., Nicholl, J., Thompson, E.M., Haan, E., Kalscheuer, V.M., and Gecz, J.
- Abstract
Item does not contain fulltext, Next generation genomic technologies have made a significant contribution to the understanding of the genetic architecture of human neurodevelopmental disorders. Copy number variants (CNVs) play an important role in the genetics of intellectual disability (ID). For many CNVs, and copy number gains in particular, the responsible dosage-sensitive gene(s) have been hard to identify. We have collected 18 different interstitial microduplications and 1 microtriplication of Xq25. There were 15 affected individuals from 6 different families and 13 singleton cases, 28 affected males in total. The critical overlapping region involved the STAG2 gene, which codes for a subunit of the cohesin complex that regulates cohesion of sister chromatids and gene transcription. We demonstrate that STAG2 is the dosage-sensitive gene within these CNVs, as gains of STAG2 mRNA and protein dysregulate disease-relevant neuronal gene networks in cells derived from affected individuals. We also show that STAG2 gains result in increased expression of OPHN1, a known X-chromosome ID gene. Overall, we define a novel cohesinopathy due to copy number gain of Xq25 and STAG2 in particular.
- Published
- 2015
10. Two coexisting heterozygous frameshift mutations in PROP1 are responsible for a different phenotype of combined pituitary hormone deficiency
- Author
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Ziemnicka, K., primary, Budny, B., additional, Drobnik, K., additional, Baszko-Błaszyk, D., additional, Stajgis, M., additional, Katulska, K., additional, Waśko, R., additional, Wrotkowska, E., additional, Słomski, R., additional, and Ruchała, M., additional
- Published
- 2015
- Full Text
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11. X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes
- Author
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Hu, H, primary, Haas, S A, additional, Chelly, J, additional, Van Esch, H, additional, Raynaud, M, additional, de Brouwer, A P M, additional, Weinert, S, additional, Froyen, G, additional, Frints, S G M, additional, Laumonnier, F, additional, Zemojtel, T, additional, Love, M I, additional, Richard, H, additional, Emde, A-K, additional, Bienek, M, additional, Jensen, C, additional, Hambrock, M, additional, Fischer, U, additional, Langnick, C, additional, Feldkamp, M, additional, Wissink-Lindhout, W, additional, Lebrun, N, additional, Castelnau, L, additional, Rucci, J, additional, Montjean, R, additional, Dorseuil, O, additional, Billuart, P, additional, Stuhlmann, T, additional, Shaw, M, additional, Corbett, M A, additional, Gardner, A, additional, Willis-Owen, S, additional, Tan, C, additional, Friend, K L, additional, Belet, S, additional, van Roozendaal, K E P, additional, Jimenez-Pocquet, M, additional, Moizard, M-P, additional, Ronce, N, additional, Sun, R, additional, O'Keeffe, S, additional, Chenna, R, additional, van Bömmel, A, additional, Göke, J, additional, Hackett, A, additional, Field, M, additional, Christie, L, additional, Boyle, J, additional, Haan, E, additional, Nelson, J, additional, Turner, G, additional, Baynam, G, additional, Gillessen-Kaesbach, G, additional, Müller, U, additional, Steinberger, D, additional, Budny, B, additional, Badura-Stronka, M, additional, Latos-Bieleńska, A, additional, Ousager, L B, additional, Wieacker, P, additional, Rodríguez Criado, G, additional, Bondeson, M-L, additional, Annerén, G, additional, Dufke, A, additional, Cohen, M, additional, Van Maldergem, L, additional, Vincent-Delorme, C, additional, Echenne, B, additional, Simon-Bouy, B, additional, Kleefstra, T, additional, Willemsen, M, additional, Fryns, J-P, additional, Devriendt, K, additional, Ullmann, R, additional, Vingron, M, additional, Wrogemann, K, additional, Wienker, T F, additional, Tzschach, A, additional, van Bokhoven, H, additional, Gecz, J, additional, Jentsch, T J, additional, Chen, W, additional, Ropers, H-H, additional, and Kalscheuer, V M, additional
- Published
- 2015
- Full Text
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12. OFD1 is mutated in X-linked Joubert syndrome and interacts with LCA5-encoded lebercilin.
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Coene, K.L.M., Roepman, R., Doherty, D., Afroze, B., Kroes, H.Y., Letteboer, S.J.F., Ngu, L.H., Budny, B., Wijk, H.A.R. van, Gorden, N.T., Azhimi, M., Thauvin-Robinet, C., Veltman, J.A., Boink, M., Kleefstra, T., Cremers, F.P.M., Bokhoven, H. van, Brouwer, A.P.M. de, Coene, K.L.M., Roepman, R., Doherty, D., Afroze, B., Kroes, H.Y., Letteboer, S.J.F., Ngu, L.H., Budny, B., Wijk, H.A.R. van, Gorden, N.T., Azhimi, M., Thauvin-Robinet, C., Veltman, J.A., Boink, M., Kleefstra, T., Cremers, F.P.M., Bokhoven, H. van, and Brouwer, A.P.M. de
- Abstract
Contains fulltext : 81395.pdf (publisher's version ) (Closed access), We ascertained a multi-generation Malaysian family with Joubert syndrome (JS). The presence of asymptomatic obligate carrier females suggested an X-linked recessive inheritance pattern. Affected males presented with mental retardation accompanied by postaxial polydactyly and retinitis pigmentosa. Brain MRIs showed the presence of a "molar tooth sign," which classifies this syndrome as classic JS with retinal involvement. Linkage analysis showed linkage to Xpter-Xp22.2 and a maximum LOD score of 2.06 for marker DXS8022. Mutation analysis revealed a frameshift mutation, p.K948NfsX8, in exon 21 of OFD1. In an isolated male with JS, a second frameshift mutation, p.E923KfsX3, in the same exon was identified. OFD1 has previously been associated with oral-facial-digital type 1 (OFD1) syndrome, a male-lethal X-linked dominant condition, and with X-linked recessive Simpson-Golabi-Behmel syndrome type 2 (SGBS2). In a yeast two-hybrid screen of a retinal cDNA library, we identified OFD1 as an interacting partner of the LCA5-encoded ciliary protein lebercilin. We show that X-linked recessive mutations in OFD1 reduce, but do not eliminate, the interaction with lebercilin, whereas X-linked dominant OFD1 mutations completely abolish binding to lebercilin. In addition, recessive mutations in OFD1 did not affect the pericentriolar localization of the recombinant protein in hTERT-RPE1 cells, whereas this localization was lost for dominant mutations. These findings offer a molecular explanation for the phenotypic spectrum observed for OFD1 mutations; this spectrum now includes OFD1 syndrome, SGBS2, and JS.
- Published
- 2009
13. Novel missense mutations in the ubiquitination-related geneUBE2Acause a recognizable X-linked mental retardation syndrome
- Author
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Budny, B, primary, Badura-Stronka, M, additional, Materna-Kiryluk, A, additional, Tzschach, A, additional, Raynaud, M, additional, Latos-Bielenska, A, additional, and Ropers, HH, additional
- Published
- 2010
- Full Text
- View/download PDF
14. A novel nonsense mutation inCUL4Bgene in three brothers with X-linked mental retardation syndrome
- Author
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Badura-Stronka, M, primary, Jamsheer, A, additional, Materna-Kiryluk, A, additional, SowiÅska, A, additional, Kiryluk, K, additional, Budny, B, additional, and Latos-BieleÅska, A, additional
- Published
- 2010
- Full Text
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15. Two coexisting heterozygous frameshift mutations in PROP1are responsible for a different phenotype of combined pituitary hormone deficiency
- Author
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Ziemnicka, K., Budny, B., Drobnik, K., Baszko-Błaszyk, D., Stajgis, M., Katulska, K., Waśko, R., Wrotkowska, E., Słomski, R., and Ruchała, M.
- Abstract
The role of genetic background in childhood-onset combined pituitary hormone deficiency (CPHD) has been extensively studied. The major contributors are the PROP1, POU1F1, LHX3, LHX4and HESX1genes coding transcription factors implicated in pituitary organogenesis. The clinical consequences of mutations encompass impaired synthesis of a growth hormone (GH) and one or more concurrent pituitary hormones (i.e. LH, FSH, TSH, PRL). Manifestation of the disorder may vary due to various mutation impacts on the final gene products or an influence of environmental factors during pituitary organogenesis. We describe the clinical and molecular characteristics of two brothers aged 47 and 39 years presenting an uncommon manifestation of congenital hypopituitarism. Sequencing of the PROP1, POU1F1, LHX3, LHX4and HESX1genes was performed to confirm the genetic origin of the disorder. A compound heterozygosity in the PROP1gene has been identified for both probands. The first change represents a mutational hot spot (c.150delA, p.R53fsX164), whereas the second is a novel alteration (p.R112X) that leads to protein disruption. Based on precise genetic diagnosis, an in silico prediction of a p.R112X mutation on protein architecture was performed. The resulting clinical phenotype was surprisingly distinct compared to most patients with genetic alterations in PROP1reported in the current literature. This may be caused by a residual activity of a newly identified p.R112X protein that preserves over 70 % of the homeodomain structure. This examination may confirm a key role of a DNA-binding homeodomain in maintaining PROP1functionality and suggests a conceivable explanation of an unusual phenotype.
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- 2016
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16. A magnetic time division multiplexer for use in control circuits.
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Budny, B.
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- 1965
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17. The influence of radioiodine therapy on ocular changes and their relation to urine cotinine level in patients with Graves' ophthalmopathy
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Agata Czarnywojtek, Zgorzalewicz-Stachowiak, M., Budny, B., Waśko, R., Florek, E., Szczepanek, E., Komar-Rychlicka, K., Waligórska-Stachura, J., Kurdybacha, P., Miechowicz, I., and Ruchała, M.
18. RET gene mutations spectrum in patients with medullary thyroid carcinoma (MTC) from Great Poland region
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Kaczmarek-Ryś M, Katarzyna Ziemnicka, Budny B, Szkudlarek M, Hryhorowicz S, Skrzypczak-Zielińska M, and Pławski A
19. Influence of glucocorticoids and glucocorticoid receptor gene polymorphisms on glucose metabolism,Wpływ glikokortykosteroidów oraz polimorfizmów genu receptora glikokortykosteroidów na zaburzenia metabolizmu glukozy
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Pisarczyk-Wiza, D., Ziemnicka, K., Budny, B., and Dorota Zozulinska-Ziolkiewicz
20. Late results of the combined treatment with the use of preoperative chemotherapy and surgery of locally advanced non-small cell lung cancer,Odległe wyniki leczenia skojarzonego z udziałem przedoperacyjnej chemioterapii i resekcji u chorych na miejscowo zaawansowanego niedrobnokomórkowego raka płuca
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Furmanik, F., Paprota, K., Karczmarek-Borowska, B., Budny, B., Sawicki, M., Korobowicz, E., Małgorzata ZDUNEK, Jabłonka, A., and Jabłonka, S.
21. Ribociclib plus Endocrine Therapy in Early Breast Cancer.
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Slamon, D., Lipatov, O., Nowecki, Z., McAndrew, N., Kukielka-Budny, B., Stroyakovskiy, D., Yardley, D. A., Huang, C.-S., Fasching, P. A., Crown, J., Bardia, A., Chia, S., Im, S.-A., Ruiz-Borrego, M., Loi, S., Xu, B., Hurvitz, S., Barrios, C., Untch, M., and Moroose, R.
- Abstract
BACKGROUND Ribociclib has been shown to have a significant overall survival benefit in patients with hormone receptor (HR)-positive, human epidermal growth factor receptor 2 (HER2)-negative advanced breast cancer. Whether this benefit in advanced breast cancer extends to early breast cancer is unclear. METHODS In this international, open-label, randomized, phase 3 trial, we randomly assigned patients with HR-positive, HER2-negative early breast cancer in a 1:1 ratio to receive ribociclib (at a dose of 400 mg per day for 3 weeks, followed by 1 week off, for 3 years) plus a nonsteroidal aromatase inhibitor (NSAI; letrozole at a dose of 2.5 mg per day or anastrozole at a dose of 1 mg per day for ≥5 years) or an NSAI alone. Premenopausal women and men also received goserelin every 28 days. Eligible patients had anatomical stage II or III breast cancer. Here we report the results of a prespecified interim analysis of invasive disease-free survival, the primary end point; other efficacy and safety results are also reported. Invasive disease-free survival was evaluated with the use of the Kaplan-Meier method. The statistical comparison was made with the use of a stratified log-rank test, with a protocol-specified stopping boundary of a one-sided P-value threshold of 0.0128 for superior efficacy. RESULTS As of the data-cutoff date for this prespecified interim analysis (January 11, 2023), a total of 426 patients had had invasive disease, recurrence, or death. A significant invasive disease-free survival benefit was seen with ribociclib plus an NSAI as compared with an NSAI alone. At 3 years, invasive disease-free survival was 90.4% with ribociclib plus an NSAI and 87.1% with an NSAI alone (hazard ratio for invasive disease, recurrence, or death, 0.75; 95% confidence interval, 0.62 to 0.91; P=0.003). Secondary end points -- distant disease-free survival and recurrence-free survival -- also favored ribociclib plus an NSAI. The 3-year regimen of ribociclib at a 400-mg starting dose plus an NSAI was not associated with any new safety signals. CONCLUSIONS Ribociclib plus an NSAI significantly improved invasive disease-free survival among patients with HR-positive, HER2-negative stage II or III early breast cancer. (Funded by Novartis; NATALEE ClinicalTrials.gov number, NCT03701334.) [ABSTRACT FROM AUTHOR]
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- 2024
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22. Molekularna analiza genów zaangażowanych w proces organogenezy tarczycy u pacjentów z hemiagenezją.
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Woliński, K., Szczepanek-Parulska, E., Budny, B., Wrotkowska, E., Piątek, K., Szaflarski, W., Ziemnicka, K., Zabel, M., Niedziela, M., and Ruchała, M.
- Published
- 2012
23. Analiza MLPA czynników transkrypcyjnych zaangażowanych w patogenezę wielohormonalnej niedoczynności przysadki (WNP) ujawnionej we wczesnych latach dziecięcych.
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Budny, B., Szkudlarek, M., Woliński, K., Wrotkowska, E., Baszko-Błaszyk, D., Gołąb, M., Kosowicz, J., Niedziela, M., Obara-Moszyńska, M., Rabska-Pietrzak, B., Ruchała, M., and Ziemnicka, K.
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- 2012
24. Genetyczne podłoże hemiagenezji tarczycy. Poszukiwanie nowych genów za pomocą sekwencjonowania nowej generacji oraz analizy bioinformatycznej -- badanie pilotowe.
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Budny, B., Zemojtel, T., Szczepanek-Parulska, E., Handschuh, L., Podkowiński, J., Żmieńko, A., Wrotkowska, E., Figlerowicz, M., Ziemnicka, K., and Ruchała, M.
- Published
- 2012
25. Longitudinal Outcomes: Student Perceptions of a Third-Party-Resource-Based Pre-matriculation Module.
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Chosie K, Bharwani S, Jackson S, Schwartz R, Gigliotti DJ, and Budny B
- Abstract
Medical school is grueling. Students are required to learn large amounts of subject matter in short periods of time, while also participating in extra-curricular activities to become well-prepared and future residents. While many third-party resources can aid students in navigating the curriculum, the process of assessing and selecting these tools can be time-consuming and frustrating. To address this challenge, a pre-matriculation module was developed to introduce students to various third-party resources, enabling them to identify their preferences and understand their learning styles before matriculation. Links to free trials were also provided. Additionally, a supplement to the module featured advice and strategies from top-quartile students (now Doctors of Osteopathic Medicine (D.O.s)) on how to succeed in the pre-clinical curriculum. The module included voice-over slide presentations that highlighted third-party resources, tips for using these resources effectively, and insights from contributors on succeeding in the pre-clinical phase. To assess the perceived efficacy of the program, surveys were administered to incoming first-year osteopathic medical students (OMS-1) students at several time points: before beginning the first semester and pre-matriculation module, immediately after completing the module, and at the end of the first semester. Further surveys were conducted at the end of the second, third, and fourth semesters. Statistical analysis of the survey data was performed to evaluate students' perceptions of the module's value. Results indicated that students perceived the pre-matriculation module as significantly contributing to their pre-clinical academic success. These findings suggest that early exposure to third-party learning resources and tailored guidance from successful peers may ease the transition into medical school and foster better academic outcomes. Future research should explore the long-term impact of such pre-matriculation interventions on clinical performance and overall medical education. Additionally, investigations into tailoring modules to different learning styles or specific specialties could further optimize the student experience and success in medical education., Competing Interests: Human subjects: Consent was obtained or waived by all participants in this study. Alabama College of Osteopathic Medicine issued approval HS220120-E. This approval is effective on the date above and will continue until 01/22/2025. After this date, a renewal will be necessary to continue the research. Animal subjects: All authors have confirmed that this study did not involve animal subjects or tissue. Conflicts of interest: In compliance with the ICMJE uniform disclosure form, all authors declare the following: Payment/services info: All authors have declared that no financial support was received from any organization for the submitted work. Financial relationships: All authors have declared that they have no financial relationships at present or within the previous three years with any organizations that might have an interest in the submitted work. Other relationships: All authors have declared that there are no other relationships or activities that could appear to have influenced the submitted work., (Copyright © 2024, Chosie et al.)
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- 2024
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26. Specific Deletions of Chromosomes 3p, 5q, 13q, and 21q among Patients with G2 Grade of Non-Small Cell Lung Cancer.
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Kolecka-Bednarczyk A, Frydrychowicz M, Budny B, Ruciński M, Dompe C, Gabryel P, Płachno BJ, Ruchała M, Ziemnicka K, Zieliński P, and Budna-Tukan J
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- Humans, Male, Female, Middle Aged, Chromosome Deletion, Chromosomes, Human, Pair 3 genetics, Aged, Chromosomes, Human, Pair 5 genetics, Neoplasm Grading, Chromosomes, Human, Pair 13 genetics, Gene Expression Profiling methods, Carcinoma, Non-Small-Cell Lung genetics, Carcinoma, Non-Small-Cell Lung pathology, Lung Neoplasms genetics, Lung Neoplasms pathology
- Abstract
Non-small cell lung cancer (NSCLC) leads as a primary cause of cancer-related premature mortality in Western populations. This study leverages cutting-edge gene-expression-profiling technologies to perform an in-depth molecular characterization of NSCLC specimens, with the objective of uncovering tumor-specific genomic alterations. By employing DNA microarray analysis, our research aims to refine the classification of NSCLC for early detection, guide molecular-targeted treatment approaches, enhance prognostication, and broaden the scientific understanding of the disease's biology. We identified widespread genomic abnormalities in our samples, including the recurrent loss of chromosomal regions 3p, 5q, 13q, and 21q and the gain of 12p. Furthermore, utilizing Metascape for bioinformatic analysis revealed critical biological pathways disrupted in NSCLC, offering promising leads for novel therapeutic interventions.
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- 2024
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27. Variety of genetic defects in GnRH and hypothalamic-pituitary signaling and development in normosmic patients with IHH.
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Kałużna M, Budny B, Rabijewski M, Dubiel A, Trofimiuk-Müldner M, Szutkowski K, Piotrowski A, Wrotkowska E, Hubalewska-Dydejczyk A, Ruchała M, and Ziemnicka K
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- Humans, Male, Female, Adult, Young Adult, Adolescent, Signal Transduction genetics, Hypothalamo-Hypophyseal System metabolism, Mutation, Middle Aged, Receptors, LHRH genetics, Genetic Association Studies, Child, Gonadotropin-Releasing Hormone genetics, Hypogonadism genetics
- Abstract
Introduction: Normosmic isolated hypogonadotropic hypogonadism (nIHH) is a clinically and genetically heterogeneous disorder. Deleterious variants in over 50 genes have been implicated in the etiology of IHH, which also indicates a possible role of digenicity and oligogenicity. Both classes of genes controlling GnRH neuron migration/development and hypothalamic/pituitary signaling and development are strongly implicated in nIHH pathogenesis. The study aimed to investigate the genetic background of nIHH and further expand the genotype-phenotype correlation., Methods: A total of 67 patients with nIHH were enrolled in the study. NGS technology and a 38-gene panel were applied., Results: Causative defects regarded as at least one pathogenic/likely pathogenic (P/LP) variant were found in 23 patients (34%). For another 30 individuals, variants of unknown significance (VUS) or benign (B) were evidenced (45%). The most frequently mutated genes presenting P/LP alterations were GNRHR ( n = 5) , TACR3 ( n = 3), and CHD7, FGFR1, NSMF, BMP4 , and NROB1 ( n = 2 each). Monogenic variants with solid clinical significance (P/LP) were observed in 15% of subjects, whereas oligogenic defects were detected in 19% of patients. Regarding recurrence, 17 novel pathogenic variants affecting 10 genes were identified for 17 patients. The most recurrent pathogenic change was GNRHR :p.Arg139His, detected in four unrelated subjects. Another interesting observation is that P/LP defects were found more often in genes related to hypothalamic-pituitary pathways than those related to GnRH., Conclusions: The growing importance of the neuroendocrine pathway and related genes is drawing increasing attention to nIHH. However, the underestimated potential of VUS variants in IHH etiology, particularly those presenting recurrence, should be further elucidated., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Kałużna, Budny, Rabijewski, Dubiel, Trofimiuk-Müldner, Szutkowski, Piotrowski, Wrotkowska, Hubalewska-Dydejczyk, Ruchała and Ziemnicka.)
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- 2024
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28. Single-agent metronomic versus weekly oral vinorelbine as first-line chemotherapy in patients with HR-positive/HER2-negative advanced breast cancer: The randomized Tempo Breast study.
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Freyer G, Martinez-Jañez N, Kukielka-Budny B, Ulanska M, Bourgeois H, Muñoz M, Morales S, Calero JB, Cortesi L, Pintér T, Palácová M, Cherciu N, Petru E, Ettl J, de Almeida C, Villanova G, Raymond R, Minh CTT, Rodrigues A, and Cazzaniga ME
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- Humans, Female, Vinorelbine, Breast metabolism, Receptor, ErbB-2 metabolism, Progression-Free Survival, Administration, Metronomic, Antineoplastic Combined Chemotherapy Protocols, Treatment Outcome, Vinblastine, Breast Neoplasms
- Abstract
Introduction: Single-agent oral vinorelbine is a standard of care for hormone receptor (HR)-positive/human epidermal growth factor receptor 2 (HER2)-negative advanced breast cancer (ABC) that has progressed on endocrine therapy. Metronomic administration may offer a better balance of efficacy and safety than standard regimens, but data from previous trials are scarce., Methods: In this open-label, multicenter, phase II trial, patients were randomized to oral vinorelbine administered on a metronomic (50 mg three times weekly) or weekly (60 mg/m
2 in cycle 1, increasing to 80 mg/m2 if well tolerated) schedule. Treatment was continued until disease progression or intolerance. The primary endpoint was disease control rate (DCR, the proportion of patients with a best overall confirmed response of CR, PR, or stable disease lasting 6 months or more)., Results: One-hundred sixty-three patients were randomized and treated. The DCR was 63.4% (95% confidence interval [CI]: 52.0-73.8) with metronomic vinorelbine and 72.8% (95% CI: 61.8-82.1) with weekly vinorelbine. Weekly vinorelbine was also associated with longer progression-free survival (5.6 vs 4.0 months) and overall survival (26.7 vs 22.3 months) than metronomic vinorelbine, but was associated with more adverse events., Conclusions: In this randomized phase II trial, single-agent metronomic oral vinorelbine was effective and well tolerated as first-line chemotherapy for patients with HR-positive/HER2-negative ABC. Formal comparisons are not done in this phase II study and one can simply observe that confidence intervals of all endpoints overlap. When deciding for a chemotherapy after failure of endocrine therapy and CDK 4/6 inhibitors, oral vinorelbine might be an option to be given with either schedule., Clinical Trial Registration Number: EudraCT 2014-003860-19., Competing Interests: Declarations of competing interest GF: scientific coordinator and principal investigator of the study; participated in advisory boards, acted as a speaker, and conducted training sessions on behalf of Pierre Fabre. NM-J: received consultancy fees from AstraZeneca, Daiichi Sankyo, Pfizer, Novartis, Lilly, Pierre Fabre, Roche, and GSK; and travel support from Roche, AstraZeneca, Pfizer, and Novartis. MM: received personal fees from Roche, Novartis, and Eisai; and other financial support from Roche and Lilly. LC: received honoraria from AstraZeneca, MSD, and Pfizer; Novartis, and Gilead. MP: received consultancy fees from AstraZeneca, Novartis, Pfizer, Eli Lilly, and Amgen. EP: received consultancy fees from AstraZeneca, Daiichi Sankyo, Pfizer, Novartis, Lilly, Pierre Fabre, Roche, and GSK; research funding from Daiichi Sankyo, Pfizer, Lilly, Novartis, Seattle Genetics, AstraZeneca, and Roche; and travel support from AstraZeneca, GSK, Pfizer, Lilly, and GSK. JE: received consultancy fees from AstraZeneca, Daiichi Sankyo, Pfizer, Novartis, Lilly, Pierre Fabre, Roche, and Tesaro; research funding from Daiichi Sankyo, Pfizer, Lilly, Novartis, Seattle Genetics, AstraZeneca, Roche, and Odonate; and travel support from AstraZeneca, Daiichi Sankyo, Celgene, Pfizer, Novartis, Lilly, and Tesaro. AR: received honoraria for participating in advisory boards for Boehringer Ingelheim, Bristol Myers Squibb, and MSD; and in internal training events at Pfizer and AstraZeneca. MEC: participated in an advisory board for Eli Lilly and Pierre Fabre. CdA, GV, RR and CTTM: employees of Pierre Fabre. BK-B, MU, HB, SM, JBC, TP, and NC: no conflicts to declare., (Copyright © 2024. Published by Elsevier Ltd.)- Published
- 2024
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29. Glomerulonephritis Associated With Infected Cardiac Pacemaker Lead Mimics Infective Endocarditis-Associated Glomerulonephritis With Resolution After Lead Removal: A Case Report and Literature Review.
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Said J, Budny B, Sappington A, Caza T, Rifai AO, Rifai S, and Denig KM
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The incidence of cardiac pacemaker lead infections is increasing due to the rise in cardiac implantable device use. These infections mimic infective endocarditis (IE) and cause a variety of complications. However, there is a scarcity of knowledge regarding glomerulonephritis (GN) resulting from cardiac pacemaker-lead infections. This report describes a 71-year-old female who presented with GN associated with a cardiac pacemaker-lead infection. The patient was successfully treated with intravenous (IV) antibiotics, IV steroids, and early surgical removal of the cardiac pacemaker lead, resulting in the resolution of GN. Current guidelines do not address cardiac pacemaker lead infection-associated GN as an indication for lead removal. Given the success of our treatment approach and the rising incidence of cardiac pacemaker infections, we suggest the consideration of early surgical removal of the cardiac lead, in conjunction with antibiotics and steroids, for the treatment of cardiac lead infection associated with GN. Further research is necessary to determine the prevalence and optimal management of this complication., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Said et al.)
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- 2023
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30. Follicular Thyroid Adenoma and Follicular Thyroid Carcinoma-A Common or Distinct Background? Loss of Heterozygosity in Comprehensive Microarray Study.
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Borowczyk M, Dobosz P, Szczepanek-Parulska E, Budny B, Dębicki S, Filipowicz D, Wrotkowska E, Oszywa M, Verburg FA, Janicka-Jedyńska M, Ziemnicka K, and Ruchała M
- Abstract
Pre- and postsurgical differentiation between follicular thyroid adenoma (FTA) and follicular thyroid cancer (FTC) represents a significant diagnostic challenge. Furthermore, it remains unclear whether they share a common or distinct background and what the mechanisms underlying follicular thyroid lesions malignancy are. The study aimed to compare FTA and FTC by the comprehensive microarray and to identify recurrent regions of loss of heterozygosity (LOH). We analyzed formalin-fixed paraffin-embedded (FFPE) samples acquired from 32 Caucasian patients diagnosed with FTA (16) and FTC (16). We used the OncoScan™ microarray assay (Affymetrix, USA), using highly multiplexed molecular inversion probes for single nucleotide polymorphism (SNP). The total number of LOH was higher in FTC compared with FTA (18 vs. 15). The most common LOH present in 21 cases, in both FTA (10 cases) and FTC (11 cases), was 16p12.1, which encompasses many cancer-related genes, such as TP53 , and was followed by 3p21.31. The only LOH present exclusively in FTA patients (56% vs. 0%) was 11p11.2-p11.12. The alteration which tended to be detected more often in FTC (6 vs. 1 in FTA) was 12q24.11-q24.13 overlapping FOXN4 , MYL2, PTPN11 genes. FTA and FTC may share a common genetic background, even though differentiating rearrangements may also be detected.
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- 2023
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31. [131I]I-MIBG-negative metastases of a recurrent sporadic paraganglioma in a female with achondroplasia.
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Sawicka-Gutaj N, Majchrzak-Hernandez M, Czepczyński R, Sałyga A, Budny B, Szczepanek-Parulska E, Dziuk M, and Ruchała M
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- Humans, Female, Iodine Radioisotopes, 3-Iodobenzylguanidine, Positron-Emission Tomography, Neoplasm Recurrence, Local, Paraganglioma diagnostic imaging, Achondroplasia complications, Achondroplasia diagnostic imaging, Adrenal Gland Neoplasms
- Abstract
Not required for Clinical Vignette.
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- 2023
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32. Progressing Vulvar Melanoma Caused by Instability in cKIT Juxtamembrane Domain: A Case Report and Review of Literature.
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Englert-Golon M, Budny B, Lewandowska M, Burchardt B, Smolarek N, Ziemnicka K, Jagodziński PP, Ruchała M, Grabowska M, and Sajdak S
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- Aged, 80 and over, Humans, MAP Kinase Signaling System genetics, Mutation, Proto-Oncogene Proteins B-raf genetics, Melanoma genetics, Melanoma pathology, Skin Neoplasms genetics, Skin Neoplasms pathology
- Abstract
In order to identify the molecular pathways governing melanoma and track its progression, the next-generation sequencing (NGS) approach and targeted sequencing of cancer genes were employed. The primary tumor, as well as metastatic tissue, of an 84-year-old patient diagnosed with vulvar melanoma (VM), were investigated. The primary tumor specimen showed multiple somatic mutations in TP53 gene, suggesting its major contribution to melanoma origin. The metastatic sample showed additional alterations, including other melanoma-related genes. Clinical relevancy is postulated to juxtamembrane region instability of KIT gene (c-KIT). We did not identify BRAF or NRAS alterations, which are typical for the most common melanoma pathway-MAPK cascade. However, it should be noted that this is the first report evidencing PDGFRA in melanoma, although its role in triggering VM needs to be further elucidated.
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- 2022
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33. Efficacy and Safety of Autologous Dendritic Cell-Based Immunotherapy, Docetaxel, and Prednisone vs Placebo in Patients With Metastatic Castration-Resistant Prostate Cancer: The VIABLE Phase 3 Randomized Clinical Trial.
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Vogelzang NJ, Beer TM, Gerritsen W, Oudard S, Wiechno P, Kukielka-Budny B, Samal V, Hajek J, Feyerabend S, Khoo V, Stenzl A, Csöszi T, Filipovic Z, Goncalves F, Prokhorov A, Cheung E, Hussain A, Sousa N, Bahl A, Hussain S, Fricke H, Kadlecova P, Scheiner T, Korolkiewicz RP, Bartunkova J, and Spisek R
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- Aged, Antineoplastic Combined Chemotherapy Protocols adverse effects, Dendritic Cells pathology, Docetaxel adverse effects, Double-Blind Method, Humans, Immunotherapy adverse effects, Male, Prednisone, Prostatic Neoplasms, Castration-Resistant drug therapy
- Abstract
Importance: DCVAC/PCa is an active cellular immunotherapy designed to initiate an immune response against prostate cancer., Objective: To evaluate the efficacy and safety of DCVAC/PCa plus chemotherapy followed by DCVAC/PCa maintenance treatment in patients with metastatic castration-resistant prostate cancer (mCRPC)., Design, Setting, and Participants: The VIABLE double-blind, parallel-group, placebo-controlled, phase 3 randomized clinical trial enrolled patients with mCRPC among 177 hospital clinics in the US and Europe between June 2014 and November 2017. Data analyses were performed from December 2019 to July 2020., Interventions: Eligible patients were randomized (2:1) to receive DCVAC/PCa (add-on and maintenance) or placebo, both in combination with chemotherapy (docetaxel plus prednisone). The stratification was applied according to geographical region (US or non-US), prior therapy (abiraterone, enzalutamide, or neither), and Eastern Cooperative Oncology Group performance status (0-1 or 2). DCVAC/PCa or placebo was administered subcutaneously every 3 to 4 weeks (up to 15 doses)., Main Outcomes and Measures: The primary outcome was overall survival (OS), defined as the time from randomization until death due to any cause, in all randomized patients. Survival was compared using 2-sided log-rank test stratified by geographical region, prior therapy with abiraterone and/or enzalutamide, and Eastern Cooperative Oncology Group performance status., Results: A total of 1182 men with mCRPC (median [range] age, 68 [46-89] years) were randomized to receive DCVAC/PCa (n = 787) or placebo (n = 395). Of these, 610 (81.8%) started DCVAC/PCa, and 376 (98.4%) started placebo. There was no difference in OS between the DCVAC/PCa and placebo groups in all randomized patients (median OS, 23.9 months [95% CI, 21.6-25.3] vs 24.3 months [95% CI, 22.6-26.0]; hazard ratio, 1.04; 95% CI, 0.90-1.21; P = .60). No differences in the secondary efficacy end points (radiological progression-free survival, time to prostate-specific antigen progression, or skeletal-related events) were observed. Treatment-emergent adverse events related to DCVAC/PCa or placebo occurred in 69 of 749 (9.2%) and 48 of 379 (12.7%) patients, respectively. The most common treatment-emergent adverse events (DCVAC/PCa [n = 749] vs placebo [n = 379]) were fatigue (271 [36.2%] vs 152 [40.1%]), alopecia (222 [29.6%] vs 130 [34.3%]), and diarrhea (206 [27.5%] vs 117 [30.9%])., Conclusions and Relevance: In this phase 3 randomized clinical trial, DCVAC/PCa combined with docetaxel plus prednisone and continued as maintenance treatment did not extend OS in patients with mCRPC and was well tolerated., Trial Registration: ClinicalTrials.gov Identifier: NCT02111577.
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- 2022
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34. NKX2-5 Variant in Two Siblings with Thyroid Hemiagenesis.
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Szczepanek-Parulska E, Budny B, Borowczyk M, Zhukov I, Szutkowski K, Zawadzka K, Tahir R, Minczykowski A, Niedziela M, and Ruchała M
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- Child, Exome, Homeobox Protein Nkx-2.5 genetics, Humans, Mutation, Siblings, Thyroid Dysgenesis genetics, Thyroid Dysgenesis pathology
- Abstract
Thyroid hemiagenesis (THA) is an inborn absence of one thyroid lobe of largely unknown etiopathogenesis. The aim of the study was to reveal genetic factors responsible for thyroid maldevelopment in two siblings with THA. None of the family members presented with congenital heart defect. The samples were subjected to whole-exome sequencing (WES) (Illumina, TruSeq Exome Enrichment Kit, San Diego, CA 92121, USA). An ultra-rare variant c.839C>T (p.Pro280Leu) in NKX2-5 gene (NM_004387.4) was identified in both affected children and an unaffected father. In the mother, the variant was not present. This variant is reported in population databases with 0.0000655 MAF (GnomAD v3, dbSNP rs761596254). The affected amino acid position is moderately conserved (positive scores in PhyloP: 1.364 and phastCons: 0.398). Functional prediction algorithms showed deleterious impact (dbNSFP v4.1, FATHMM, SIFT) or benign (CADD, PolyPhen-2, Mutation Assessor). According to ACMG criteria, variant is classified as having uncertain clinical significance. For the first time, NKX2-5 gene variants were found in two siblings with THA, providing evidence for its potential contribution to the pathogenesis of this type of thyroid dysgenesis. The presence of the variant in an unaffected parent, carrier of p.Pro280Leu variant, suggests potential contribution of yet unidentified additional factors determining the final penetrance and expression.
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- 2022
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35. Homozygous microdeletion in the 11p13 region in the patient with isolated form of aniridia: New challenges in the genetic diagnostics of aniridia.
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Wawrocka A, Walczak-Sztulpa J, Socha M, Kuszel L, Sowinska-Seidler A, Budny B, Bukowska-Olech E, Pilas-Pomykalska M, Jamsheer A, and Krawczynski MR
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- Comparative Genomic Hybridization, Homeodomain Proteins genetics, Homozygote, Humans, Male, PAX6 Transcription Factor genetics, Pedigree, Sequence Deletion, Aniridia diagnosis, Aniridia genetics, Eye Proteins genetics
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Aniridia is usually an autosomal dominant, rare disorder characterized by a variable degree of hypoplasia or the absence of iris tissue, with additional ocular abnormalities. Pathogenic variants in the PAX6 gene are associated with aniridia in most patients. However, in up to 30% of individuals, disease results from 11p13 chromosomal rearrangements. Here we present a patient with a clinical diagnosis of partial aniridia born to consanguineous Polish parents. The parents were asymptomatic and ophthalmologically normal. We performed PAX6 sequencing, array comparative genomic hybridization, quantitative real-time PCR, and whole genome sequencing. aCGH revealed a homozygous deletion of the DCDC1 gene fragment in the patient. The same, but heterozygous deletion, was detected in each of the patient's asymptomatic parents and brother. In the presented family, the signs and symptoms of aniridia are observed only in the homozygous proband. Whole genome sequencing analysis was performed to determine other possible causes of the disease and did not detect any additional or alternative potentially pathogenic variant. We report a novel homozygous deletion located in the 11p13 region, which does not include the PAX6 gene or any known PAX6 enhancers. To our best knowledge, this is the first reported case of a patient presented with isolated aniridia carrying a homozygous microdeletion downstream of the PAX6 gene., (© 2021 Wiley Periodicals LLC.)
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- 2022
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36. CDON gene contributes to pituitary stalk interruption syndrome associated with unilateral facial and abducens nerve palsy.
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Obara-Moszyńska M, Budny B, Kałużna M, Zawadzka K, Jamsheer A, Rohde A, Ruchała M, Ziemnicka K, and Niedziela M
- Subjects
- Adolescent, Hedgehog Proteins, Humans, Pituitary Gland, Abducens Nerve Diseases, Hypopituitarism, Pituitary Diseases
- Abstract
The relationship between congenital defects of the brain and facial anomalies was proven. The Hedgehog signaling pathway plays a fundamental role in normal craniofacial development in humans. Mutations in the sonic hedgehog (SHH) signaling gene CDON have been recently reported in patients with holoprosencephaly and with pituitary stalk interruption syndrome (PSIS). This study's aim was an elucidation of an 18-year-old patient presenting PSIS, multiple pituitary hormone deficiency, and congenital unilateral facial and abducens nerve palsy. Additionally, bilateral sensorineural hearing loss, dominating at the right site, was diagnosed. From the second year of life, growth deceleration was observed, and from the age of eight, anterior pituitary hormone deficiencies were gradually confirmed and substituted. At the MRI, characteristic triad for PSIS (anterior pituitary hypoplasia, interrupted pituitary stalk and ectopic posterior lobe) was diagnosed. We performed a comprehensive genomic screening, including microarrays for structural rearrangements and whole-exome sequencing for a monogenic defect. A novel heterozygous missense variant in the CDON gene (c.1814G > T; p.Gly605Val) was identified. The variant was inherited from the mother, who, besides short stature, did not show any disease symptoms. The variant was absent in control databases and 100 healthy subjects originating from the same population. We report a novel variant in the CDON gene associated with PSIS and congenital cranial nerve palsy. The variant revealed autosomal dominant inheritance with incomplete penetrance in concordance with previous studies reporting CDON defects., (© 2021. The Author(s).)
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- 2021
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37. "Slipped capital femoral epiphysis in a 25-year-old hypogonadic man with a large cranial chondroma: causality or coincidence? ".
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Sawicka-Gutaj N, Woźniak W, Naczk J, Pochylski M, Kruczyński J, Budny B, Szczepanek-Parulska E, and Ruchała M
- Subjects
- Adult, Chondroma complications, Chondroma therapy, Humans, Hypogonadism complications, Hypogonadism therapy, Male, Prognosis, Skull Neoplasms complications, Skull Neoplasms therapy, Slipped Capital Femoral Epiphyses complications, Slipped Capital Femoral Epiphyses therapy, Chondroma pathology, Hypogonadism pathology, Skull Neoplasms pathology, Slipped Capital Femoral Epiphyses pathology
- Abstract
Background: Slipped capital femoral epiphysis (SCFE) is a hip disorder frequently occurring in adolescence. In adults it is rare and so far very few cases have been documented., Case Presentation: This report presents a 25-year-old patient diagnosed with an anterior fossa giant chondroma, hypogonadotropic hypogonadism, and SCFE. The patient underwent surgical and hormonal therapy. His symptoms revealed, and he became a father., Conclusions: Every patient diagnosed with SCFE in adulthood should undergo endocrinological assessment based on physical examination and laboratory tests., (© 2021. The Author(s).)
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- 2021
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38. Defects in GnRH Neuron Migration/Development and Hypothalamic-Pituitary Signaling Impact Clinical Variability of Kallmann Syndrome.
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Kałużna M, Budny B, Rabijewski M, Kałużny J, Dubiel A, Trofimiuk-Müldner M, Wrotkowska E, Hubalewska-Dydejczyk A, Ruchała M, and Ziemnicka K
- Subjects
- Adolescent, Adult, Cell Movement, Female, Gonadotropin-Releasing Hormone genetics, Gonadotropin-Releasing Hormone metabolism, Humans, Hypothalamo-Hypophyseal System cytology, Hypothalamo-Hypophyseal System growth & development, Kallmann Syndrome metabolism, Kallmann Syndrome pathology, Male, Middle Aged, Neurons cytology, Neurons metabolism, Neurons physiology, Signal Transduction, Hypothalamo-Hypophyseal System metabolism, Kallmann Syndrome genetics, Mutation, Neurogenesis, Phenotype
- Abstract
Kallmann syndrome (KS) is a combination of isolated hypogonadotropic hypogonadism (IHH) with olfactory dysfunction, representing a heterogeneous disorder with a broad phenotypic spectrum. The genetic background of KS has not yet been fully established. This study was conducted on 46 Polish KS subjects (41 males, 5 females; average age: 29 years old). The studied KS patients were screened for defects in a 38-gene panel with next-generation sequencing (NGS) technology. The analysis revealed 27 pathogenic and likely pathogenic (P/LP) variants, and 21 variants of uncertain significance (VUS). The P/LP variants were detected in 20 patients (43.5%). The prevalence of oligogenic P/LP defects in selected genes among KS patients was 26% (12/46), whereas the co-occurrence of other variants was detected in 43% (20 probands). The examined KS patients showed substantial genotypic and phenotypic variability. A marked difference in non-reproductive phenotypes, involving defects in genes responsible for GnRH neuron development/migration and genes contributing to pituitary development and signaling, was observed. A comprehensive gene panel for IHH testing enabled the detection of clinically relevant variants in the majority of KS patients, which makes targeted NGS an effective molecular tool. The significance of oligogenicity and the high incidence of alterations in selected genes should be further elucidated.
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- 2021
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39. Compound heterozygous GLI3 variants in siblings with thyroid hemiagenesis.
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Szczepanek-Parulska E, Budny B, Borowczyk M, Zawadzka K, Sztromwasser P, and Ruchała M
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- Exome, Humans, Mutation, Nerve Tissue Proteins genetics, Pedigree, Siblings, Thyroid Dysgenesis genetics, Zinc Finger Protein Gli3 genetics
- Abstract
Purpose: Thyroid hemiagenesis (THA) is an inborn absence of one thyroid lobe of largely unknown etiopathogenesis, affecting 0.05-0.5% population. The aim of the study was an identification of genetic factors responsible for thyroid maldevelopment in two siblings with THA., Methods: We evaluated a three-generation THA family with two sisters presenting the disorder. Proband (Patient II:3) was diagnosed at the age of 45 due to neck asymmetry. Left lobe agenesis and nontoxic multinodular goiter were depicted. Proband's sister (Patient II:6) was euthyroid, showed up at the age of 39 due to neck discomfort and left-sided THA was demonstrated. Affected individuals were subjected to whole-exome sequencing (WES) (Illumina, TruSeq Exome Kit) and all identified variants were evaluated for pathogenicity. Sanger sequencing was used to confirm WES data and check segregation among first-degree relatives., Results: In both siblings, a compound heterozygous mutations NM_000168.6: c.[2179G>A];[4039C>A] (NP_000159.3: p.[Gly727Arg];[Gln1347Lys]) were identified in the GLI3 gene, affecting exon 14 and 15, respectively. According to the American College of Medical Genetics, variants are classified as of uncertain significance, and were found to be very rare (GnomAD MAF 0.007131 and 0.00003187). The segregation mapping and analysis of relatives indicated causativeness of compound heterozygosity., Conclusions: We demonstrated for the first time a unique association of THA phenotype and the presence of compound heterozygous mutations p.[Gly727Arg];[Gln1347Lys] of GLI3 gene in two siblings.
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- 2021
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40. Head and Neck Paragangliomas-A Genetic Overview.
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Majewska A, Budny B, Ziemnicka K, Ruchała M, and Wierzbicka M
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- Genetic Predisposition to Disease, Humans, Mutation, Head and Neck Neoplasms genetics, Paraganglioma genetics
- Abstract
Pheochromocytomas (PCC) and paragangliomas (PGL) are rare neuroendocrine tumors. Head and neck paragangliomas (HNPGL) can be categorized into carotid body tumors, which are the most common, as well as jugular, tympanic, and vagal paraganglioma. A review of the current literature was conducted to consolidate knowledge concerning PGL mutations, familial occurrence, and the practical application of this information. Available scientific databases were searched using the keywords head and neck paraganglioma and genetics, and 274 articles in PubMed and 1183 in ScienceDirect were found. From these articles, those concerning genetic changes in HNPGLs were selected. The aim of this review is to describe the known genetic changes and their practical applications. We found that the etiology of the tumors in question is based on genetic changes in the form of either germinal or somatic mutations. 40% of PCC and PGL have a predisposing germline mutation (including VHL, SDHB, SDHD, RET, NF1, THEM127, MAX, SDHC, SDHA, SDHAF2, HIF2A, HRAS, KIF1B, PHD2, and FH ). Approximately 25-30% of cases are due to somatic mutations, such as RET, VHL, NF1, MAX , and HIF2A . The tumors were divided into three main clusters by the Cancer Genome Atlas (TCGA); namely, the pseudohypoxia group, the Wnt signaling group, and the kinase signaling group. The review also discusses genetic syndromes, epigenetic changes, and new testing technologies such as next-generation sequencing (NGS).
- Published
- 2020
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41. Copy Number Variants Contributing to Combined Pituitary Hormone Deficiency.
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Budny B, Karmelita-Katulska K, Stajgis M, Żemojtel T, Ruchała M, and Ziemnicka K
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- Child, Female, Gene Rearrangement genetics, Genome, Human, Humans, Male, DNA Copy Number Variations genetics, Hypopituitarism genetics
- Abstract
Combined pituitary hormone deficiency represents a disorder with complex etiology. For many patients, causes of the disease remain unexplained, despite usage of advanced genetic testing. Although major and common transcription factors were identified two decades ago, we still struggle with identification of rare inborn factors contributing to pituitary function. In this report, we follow up genomic screening of CPHD patient cohort that were previously tested for changes in a coding sequences of genes with the use of the whole exome. We aimed to find contribution of rare copy number variations (CNVs). As a result, we identified genomic imbalances in 7 regions among 12 CPHD patients. Five out of seven regions showed copy gains whereas two presented losses of genomic fragment. Three regions with detected gains encompassed known CPHD genes namely LHX4, HESX1 , and OTX2 . Among new CPHD loci, the most interesting seem to be the region covering SIX3 gene, that is abundantly expressed in developing brain, and together with HESX1 contributes to pituitary organogenesis as it was evidenced before in functional studies. In conclusion, with the use of broadened genomic approach we identified copy number imbalances for 12 CPHD patients. Although further functional studies are required in order to estimate its true impact on expression pattern during pituitary organogenesis and CPHD etiology.
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- 2020
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42. SEMA3A and IGSF10 Are Novel Contributors to Combined Pituitary Hormone Deficiency (CPHD).
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Budny B, Zemojtel T, Kaluzna M, Gut P, Niedziela M, Obara-Moszynska M, Rabska-Pietrzak B, Karmelita-Katulska K, Stajgis M, Ambroziak U, Bednarczuk T, Wrotkowska E, Bukowska-Olech E, Jamsheer A, Ruchala M, and Ziemnicka K
- Subjects
- Child, Cohort Studies, Female, Humans, Male, Mutation, Pedigree, Protein Conformation, Exome Sequencing, Hypopituitarism genetics, Immunoglobulins genetics, Semaphorin-3A genetics
- Abstract
Background: The mutation frequencies of pituitary transcription factors genes in patients with combined pituitary hormone deficiencies (CPHD) vary substantially between populations. However, apart from PROP1 the mutation rate of other genes is low and for almost half of the patients with CPHD the routine sequencing of known genes is unsuccessful in the identification of genetic causes. Methods: A cohort of 66 sporadic and nine familial CPHD cases (80 patients in total) were subjected to initial testing of the genes PROP1, POU1F1, LHX3, LHX4 , and HESX1 using a targeted gene panel and MLPA. In patients who tested negative, a whole exome sequencing approach was employed. Results: In nine of the familial cases and 32 of the sporadic patients mutations in the PROP1 gene were found (the common pathogenic variants included c.301_302delAG and c.150delA). Mutations were also found in genes so far not related directly to CPHD. A unique homozygous and clinically relevant variant was identified in the SEMA3A gene, which may contribute to neural development and his phenotypic spectrum including short stature and isolated hypogonadotropic hypogonadism (IHH). Another pathogenic variant p.A1672T was found in the IGSF10 gene reported to be responsible for delayed puberty and neuronal migration during embryogenesis. Several suspected novel but predicted benign variants were also identified for the CHD7, WDR11 and FGF17 genes. Conclusion: Although PROP1 defects account for a majority of CPHD patients, identification of rare, less frequent variants constitutes a big challenge. Multiple genetic factors responsible for CPHD are still awaiting discovery and therefore the usage of efficient genomic tools (i.e., whole exome sequencing) will further broaden our knowledge regarding pituitary development and function., (Copyright © 2020 Budny, Zemojtel, Kaluzna, Gut, Niedziela, Obara-Moszynska, Rabska-Pietrzak, Karmelita-Katulska, Stajgis, Ambroziak, Bednarczuk, Wrotkowska, Bukowska-Olech, Jamsheer, Ruchala and Ziemnicka.)
- Published
- 2020
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43. High incidence of FLT3 mutations in follicular thyroid cancer: potential therapeutic target in patients with advanced disease stage.
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Borowczyk M, Szczepanek-Parulska E, Dębicki S, Budny B, Janicka-Jedyńska M, Gil L, Verburg FA, Filipowicz D, Wrotkowska E, Majchrzycka B, Marszałek A, Ziemnicka K, and Ruchała M
- Abstract
Background: Conventional treatments for follicular thyroid cancer (FTC) can be ineffective, leading to poor prognosis. The aim of this study was to identify mutations associated with FTC that would serve as novel molecular markers of the disease and its outcome and could potentially identify new therapeutic targets., Methods: FLT3 mutations were first detected in a 29-year-old White female diagnosed with metastasized, treatment-refractory FTC. Analyses of FLT3 mutational status through next-generation sequencing of formalin-fixed, paraffin-embedded FTC specimens were subsequently performed in 35 randomly selected patients diagnosed with FTC., Results: FLT3 mutations were found in 69% of patients. FLT3 mutation-positive patients were significantly older than those that were FLT3 mutation-negative [median age at diagnosis 54 (36-82) versus 45 (27-58) ( p = 0.023)]. Patients over 60 years were 23 times more likely to be FLT3 mutation-positive ( p = 0.006). However, the number of FLT3 mutations did not correlate with age ( r -Pearson: -0.244, p -value: 0.25). A total of 26 mutations were identified in the FLT3 gene with 2-16 FLT3 mutations in each FLT3 mutation-positive patient (mean: 5.6 mutations/patient). Tyrosine kinase domain (TKD) mutations in the FLT3 gene were detected in 58% of FLT3 mutation-positive patients. All FLT3 mutation-positive patients with a disease stage of pT2N1 or worse harbored at least one mutation in the TKD of FLT3 ., Conclusions: There is a wide spectrum and high frequency of FLT3 mutations in FTC. The precise role of FLT3 mutations in the genesis of FTC, as well as its potential role as a therapeutic target, requires further investigation., Competing Interests: Conflict of interest statement: The authors declare that there is no conflict of interest., (© The Author(s), 2020.)
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- 2020
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44. Genetic heterogeneity of indeterminate thyroid nodules assessed preoperatively with next-generation sequencing reflects the diversity of the final histopathologic diagnosis.
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Borowczyk M, Szczepanek-Parulska E, Dębicki S, Budny B, Verburg FA, Filipowicz D, Wrotkowska E, Janicka-Jedyńska M, Więckowska B, Gil L, Ziemnicka K, and Ruchała M
- Subjects
- Adenocarcinoma, Follicular epidemiology, Humans, Molecular Diagnostic Techniques, Mutation, Pennsylvania epidemiology, Retrospective Studies, Thyroid Neoplasms epidemiology, Adenocarcinoma, Follicular diagnosis, Adenocarcinoma, Follicular genetics, Genetic Variation, High-Throughput Nucleotide Sequencing, Thyroid Neoplasms diagnosis, Thyroid Neoplasms genetics, Thyroid Nodule genetics
- Abstract
Introduction: Inconclusive cytologic results of thyroid fine‑needle aspiration biopsy (FNAB) include atypia or follicular lesion of undetermined significance (FLUS) and follicular neoplasm or suspicious for follicular neoplasm (SFN)., Objectives: We aimed to assess the genetic background of indeterminate thyroid nodules and to identify new genetic pathways potentially involved in the development of follicular thyroid cancer., Patients and Methods: Genomic DNA was isolated from FNAB samples from 25 white patients (2 men; 23 women) diagnosed preoperatively with FLUS (n = 16) and SFN (n = 9). Next‑generation sequencing (NGS) was performed. The results were compared with clinical data, including final postsurgical diagnoses., Results: The malignancy rate was 28%. KDR, RET, and TP53 gene mutations were most frequent in FLUS and SFN samples finally diagnosed as cancers, whereas alterations in RET, TP53, FLT3, APC, and PDGFRA predominated in benign tumors. KDR tended to be more common in malignant samples (75% vs 20%, P = 0.1). A total number of mutated genes was higher in patients with benign tumors (17 vs 11, P = 0.02), but there was no difference between groups in the mean number of mutations per patient (4.9 [range, 1-9])., Conclusions: We showed that the heterogeneity in the genetic background of indeterminate thyroid nodules corresponds to their histopathologic diversity. The role of KDR as a possible malignancy marker needs to be confirmed. Glass slides with FNAB samples may constitute a reliable source of genetic material for NGS studies, providing a better insight into the molecular profile of thyroid nodules.
- Published
- 2019
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45. Differences in Mutational Profile between Follicular Thyroid Carcinoma and Follicular Thyroid Adenoma Identified Using Next Generation Sequencing.
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Borowczyk M, Szczepanek-Parulska E, Dębicki S, Budny B, Verburg FA, Filipowicz D, Więckowska B, Janicka-Jedyńska M, Gil L, Ziemnicka K, and Ruchała M
- Subjects
- Adult, Aged, Aged, 80 and over, Alleles, Diagnosis, Differential, Female, Gene Expression Profiling, High-Throughput Nucleotide Sequencing, Humans, Male, Middle Aged, Odds Ratio, Adenocarcinoma, Follicular diagnosis, Adenocarcinoma, Follicular genetics, Biomarkers, Tumor, Mutation, Thyroid Neoplasms diagnosis, Thyroid Neoplasms genetics
- Abstract
We aimed to identify differences in mutational status between follicular thyroid adenoma (FTA) and follicular thyroid cancer (FTC). The study included 35 patients with FTA and 35 with FTC. DNA was extracted from formalin-fixed paraffin-embedded (FFPE) samples from thyroidectomy. Next-generation sequencing (NGS) was performed with the 50-gene Ion AmpliSeq Cancer Hotspot Panel v2. Potentially pathogenic mutations were found in 14 (40%) FTA and 24 (69%) FTC patients (OR (95%CI) = 3.27 (1.22-8.75)). The number of mutations was higher in patients with FTC than FTA ( p -value = 0.03). SMAD4 and STK11 mutations were present only in patients with FTA, while defects in FBXW7 , JAK3 , KIT , NRAS , PIK3CA , SMARCB1 , and TP53 were detected exclusively in FTC patients. TP53 mutations increased the risk of FTC; OR (95%CI) = 29.24 (1.64-522.00); p -value = 0.001. FLT3 -positivity was higher in FTC than in the FTA group (51.4% vs. 28.6%; p -value = 0.051). The presence of FLT3 and TP53 with no RET mutations increased FTC detectability by 17.1%, whereas the absence of FLT3 and TP53 with a presence of RET mutations increased FTA detectability by 5.7%. TP53 and FLT3 are candidate markers for detecting malignancy in follicular lesions. The best model to predict FTA and FTC may consist of FLT3 , TP53 , and RET mutations considered together.
- Published
- 2019
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46. Randomized phase II study evaluating weekly oral vinorelbine versus weekly paclitaxel in estrogen receptor-positive, HER2-negative patients with advanced breast cancer (NorBreast-231 trial).
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Aapro M, Ruiz-Borrego M, Hegg R, Kukielka-Budny B, Morales S, Cinieri S, Freitas-Junior R, Garcia-Estevez L, Szombara E, Borges GS, Passalacqua R, Hervieu H, Groc M, and Villanova G
- Subjects
- Adult, Aged, Aged, 80 and over, Breast Neoplasms metabolism, Drug Administration Schedule, Female, Humans, Middle Aged, Receptor, ErbB-2 metabolism, Receptors, Estrogen metabolism, Treatment Outcome, Antineoplastic Agents, Phytogenic administration & dosage, Breast Neoplasms drug therapy, Paclitaxel administration & dosage, Vinorelbine administration & dosage
- Abstract
Background: Single-agent paclitaxel and vinorelbine are recommended treatments for advanced breast cancer (ABC) non-responsive to hormone therapy and without visceral crisis. This phase II trial compared first-line oral vinorelbine versus weekly paclitaxel for ABC., Methods: Eligible female patients had measurable locally recurrent/metastatic estrogen receptor-positive HER2-negative breast cancer and had received prior endocrine therapy (any setting) but no chemotherapy for ABC. Patients were stratified by prior taxane and visceral metastases and randomized to either oral vinorelbine 80 mg/m
2 (first cycle at 60 mg/m2 , escalated to 80 mg/m2 in the absence of grade 3/4 toxicity) or intravenous paclitaxel 80 mg/m2 on days 1, 8, and 15 every 3 weeks until disease progression or unacceptable toxicity. The primary endpoint was disease control rate (DCR; confirmed complete or partial response, or stable disease for ≥6 weeks)., Results: The 131 randomized patients had received a median of 2 prior endocrine therapies; >70% had prior (neo)adjuvant chemotherapy and 79% visceral metastases. DCR was 75.8% (95% confidence interval: 63.6-85.5%) with vinorelbine and 75.4% (63.1-85.2%) with paclitaxel. The most common grade 3/4 adverse events were neutropenia (52%), fatigue (11%), and vomiting (5%) with vinorelbine, and neutropenia (17%), dyspnea (6%), hypertension (6%), and peripheral sensory neuropathy (5%) with paclitaxel. Grade 2 alopecia occurred in 2% of vinorelbine-treated and 34% of paclitaxel-treated patients. Neither arm showed relevant global health status changes., Conclusion: Oral vinorelbine and paclitaxel demonstrated similar DCRs (∼75%). Safety profiles differed and, together with administration route and convenience, may influence treatment choice (EudraCT number, 2012-003530-16)., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2019
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47. [Epidemiology and diagnosis of breast cancer].
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Budny A, Starosławska E, Budny B, Wójcik R, Hys M, Kozłowski P, Budny W, Brodzik A, and Burdan F
- Subjects
- Biopsy, Female, Humans, Mammography, Mutation, Breast Neoplasms diagnosis, Breast Neoplasms epidemiology, Breast Neoplasms genetics
- Abstract
Breast cancer is the most common cancer in women. Family history of breast cancer, age at menarche, number of pregnancies and births, history of breast biopsies, use of hormone replacement therapy and time from the last menstrual period are the key events to note. In addition, a high percentage of cases has been demonstrated in women with a genetically conditioned cancer, i.e. mutations in genes BRCA1, BRCA2, syndromes of Li-Fraumeni, Cowden and Peutz-Jeghers. Over 90% of cases are local or regional when detected. The diagnostics approach consists of self-control, breast palpation by the doctor, breast imaging usually with ultrasound, mammography and magnetic resonance. To confirm the diagnosis, a fine-, core-needle or mammotome biopsy is performed. The final diagnosis is based on a wide panel of immunohistochemical and cytogenetic tests. Histological examination provides accurate assessment of the tumor type, grade, estrogen and progesterone hormone receptor status, HER2 overexpression and Ki67 proliferation index. The data makes possible to qualify to one of four groups of breast cancer biological subtypes, which allows individualized treatment of the patient., (© 2019 MEDPRESS.)
- Published
- 2019
48. Obesity as a tumour development triggering factor.
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Budny A, Grochowski C, Kozłowski P, Kolak A, Kamińska M, Budny B, Abramiuk M, and Burdan F
- Subjects
- Body Mass Index, Humans, Incidence, Neoplasms etiology, Overweight, Risk Factors, Neoplasms epidemiology, Obesity
- Abstract
Introduction: The overweight and obesity epidemic represents a rapidly growing threat to the health of populations in an increasing number of countries. Nearly one-third of the world's population has excess adipose tissue. Nowadays, obesity occurrence is so common that it is replacing more traditional problems, such as an undernutrition and infectious diseases, as the most significant causes of ill health. If the current trend continues, almost half of the world's adult population will be overweight or obese by 2030., Objective: The aim of this study is to show the connection between recent trends in body mass index, and the globally changing cancer profile., State of Knowledge: A range of clinical and epidemiological studies have shown the relationship between excess body fat and the most frequently occurring malignancies. Obesity is associated with many cancers, such as: breast, colorectal, liver, lung, kidney, oesophageal, pancreatic, endometrium, ovarian, prostate, thyroid, and gallbladder cancer., Conclusions: In the light of this information, the study supports the claimed statement that obesity is one of the major health problems of the 21st century. Considering the increase in the number of obese people worldwide, it is necessary to develop a strategy allowing to prevent it. Fighting against unhealthy lifestyle in order to reduce overweight and obesity in society may have an essential impact on decreasing the number of incidences of cancer.
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- 2019
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49. Correction to: Evaluation of 167 Gene Expression Classifier (GEC) and ThyroSeq v2 Diagnostic Accuracy in the Preoperative Assessment of Indeterminate Thyroid Nodules: Bivariate/HROC Meta-analysis.
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Borowczyk M, Szczepanek-Parulska E, Olejarz M, Więckowska B, Verburg FA, Dębicki S, Budny B, Janicka-Jedyńska M, Ziemnicka K, and Ruchała M
- Abstract
The original version of the article unfortunately contained an error.
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- 2019
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50. Evaluation of 167 Gene Expression Classifier (GEC) and ThyroSeq v2 Diagnostic Accuracy in the Preoperative Assessment of Indeterminate Thyroid Nodules: Bivariate/HROC Meta-analysis.
- Author
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Borowczyk M, Szczepanek-Parulska E, Olejarz M, Więckowska B, Verburg FA, Dębicki S, Budny B, Janicka-Jedyńska M, Ziemnicka K, and Ruchała M
- Subjects
- Biopsy, Fine-Needle, Gene Expression, Humans, Sensitivity and Specificity, Thyroid Neoplasms genetics, Thyroid Neoplasms pathology, Thyroid Nodule genetics, Thyroid Nodule pathology, High-Throughput Nucleotide Sequencing, Molecular Diagnostic Techniques, Thyroid Neoplasms diagnosis, Thyroid Nodule diagnosis
- Abstract
The objective of this meta-analysis was to evaluate the performance of the Gene Expression Classifier (GEC) and ThyroSeq v2 (ThyroSeq) in the preoperative diagnosis of thyroid nodules with indeterminate fine-needle aspiration biopsy results. We searched literature databases from January 2001 to April 2018. The bivariate model analysis was performed to estimate pooled sensitivity, specificity, positive likelihood ratio (LR+), negative likelihood ratio (LR-), positive predictive value (PPV), and negative predictive value (NPV). Pooled data from 1086 nodules with histopathologic confirmation from 16 GEC studies enabled calculation of diagnostic parameters (95% confidence interval): sensitivity 98% (96-99%), specificity 12% (8-20%), PPV 45% (37-53%), and NPV 91% (85-96%). Pooled data from five ThyroSeq studies assessing 459 nodules showed sensitivity of 84% (74-91%), specificity 78% (50-92%), PPV 58% (31-81%), and NPV 93% (89-97%). When both tools were compared, GEC had a significantly higher sensitivity (p = 0.003), while ThyroSeq had a significantly higher specificity (p < 0.001) and accuracy (p = 0.015). Pooled LR+ was higher for ThyroSeq: 3.79 (1.40-10.27) vs. 1.12 (1.05-1.20). Pooled LR- was higher for GEC, 0.20 (0.10-0.39) vs. 0.13 (0.05-0.31). The bivariate summary estimates of sensitivity and specificity for GEC and ThyroSeq and their pooled accuracy showed a superiority of the ThyroSeq test. The GEC with a high sensitivity and NPV may be helpful in ruling out malignancy in cases of indeterminate thyroid nodule cytology. ThyroSeq has a significantly higher specificity and accuracy with an acceptable sensitivity so that it has the potential for use as an all-round test of malignancy of thyroid nodules.
- Published
- 2019
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