13 results on '"Budd, Jobie"'
Search Results
2. A large-scale and PCR-referenced vocal audio dataset for COVID-19
- Author
-
Budd, Jobie, Baker, Kieran, Karoune, Emma, Coppock, Harry, Patel, Selina, Cañadas, Ana Tendero, Titcomb, Alexander, Payne, Richard, Hurley, David, Egglestone, Sabrina, Butler, Lorraine, Mellor, Jonathon, Nicholson, George, Kiskin, Ivan, Koutra, Vasiliki, Jersakova, Radka, McKendry, Rachel A., Diggle, Peter, Richardson, Sylvia, Schuller, Björn W., Gilmour, Steven, Pigoli, Davide, Roberts, Stephen, Packham, Josef, Thornley, Tracey, and Holmes, Chris
- Subjects
Computer Science - Sound ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Audio and Speech Processing - Abstract
The UK COVID-19 Vocal Audio Dataset is designed for the training and evaluation of machine learning models that classify SARS-CoV-2 infection status or associated respiratory symptoms using vocal audio. The UK Health Security Agency recruited voluntary participants through the national Test and Trace programme and the REACT-1 survey in England from March 2021 to March 2022, during dominant transmission of the Alpha and Delta SARS-CoV-2 variants and some Omicron variant sublineages. Audio recordings of volitional coughs, exhalations, and speech were collected in the 'Speak up to help beat coronavirus' digital survey alongside demographic, self-reported symptom and respiratory condition data, and linked to SARS-CoV-2 test results. The UK COVID-19 Vocal Audio Dataset represents the largest collection of SARS-CoV-2 PCR-referenced audio recordings to date. PCR results were linked to 70,794 of 72,999 participants and 24,155 of 25,776 positive cases. Respiratory symptoms were reported by 45.62% of participants. This dataset has additional potential uses for bioacoustics research, with 11.30% participants reporting asthma, and 27.20% with linked influenza PCR test results., Comment: 39 pages, 4 figures
- Published
- 2022
3. Audio-based AI classifiers show no evidence of improved COVID-19 screening over simple symptoms checkers
- Author
-
Coppock, Harry, Nicholson, George, Kiskin, Ivan, Koutra, Vasiliki, Baker, Kieran, Budd, Jobie, Payne, Richard, Karoune, Emma, Hurley, David, Titcomb, Alexander, Egglestone, Sabrina, Cañadas, Ana Tendero, Butler, Lorraine, Jersakova, Radka, Mellor, Jonathon, Patel, Selina, Thornley, Tracey, Diggle, Peter, Richardson, Sylvia, Packham, Josef, Schuller, Björn W., Pigoli, Davide, Gilmour, Steven, Roberts, Stephen, and Holmes, Chris
- Subjects
Computer Science - Sound ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Audio and Speech Processing - Abstract
Recent work has reported that AI classifiers trained on audio recordings can accurately predict severe acute respiratory syndrome coronavirus 2 (SARSCoV2) infection status. Here, we undertake a large scale study of audio-based deep learning classifiers, as part of the UK governments pandemic response. We collect and analyse a dataset of audio recordings from 67,842 individuals with linked metadata, including reverse transcription polymerase chain reaction (PCR) test outcomes, of whom 23,514 tested positive for SARS CoV 2. Subjects were recruited via the UK governments National Health Service Test-and-Trace programme and the REal-time Assessment of Community Transmission (REACT) randomised surveillance survey. In an unadjusted analysis of our dataset AI classifiers predict SARS-CoV-2 infection status with high accuracy (Receiver Operating Characteristic Area Under the Curve (ROCAUC) 0.846 [0.838, 0.854]) consistent with the findings of previous studies. However, after matching on measured confounders, such as age, gender, and self reported symptoms, our classifiers performance is much weaker (ROC-AUC 0.619 [0.594, 0.644]). Upon quantifying the utility of audio based classifiers in practical settings, we find them to be outperformed by simple predictive scores based on user reported symptoms.
- Published
- 2022
4. Statistical Design and Analysis for Robust Machine Learning: A Case Study from COVID-19
- Author
-
Pigoli, Davide, Baker, Kieran, Budd, Jobie, Butler, Lorraine, Coppock, Harry, Egglestone, Sabrina, Gilmour, Steven G., Holmes, Chris, Hurley, David, Jersakova, Radka, Kiskin, Ivan, Koutra, Vasiliki, Mellor, Jonathon, Nicholson, George, Packham, Joe, Patel, Selina, Payne, Richard, Roberts, Stephen J., Schuller, Björn W., Tendero-Cañadas, Ana, Thornley, Tracey, and Titcomb, Alexander
- Subjects
Computer Science - Sound ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Audio and Speech Processing ,Statistics - Applications - Abstract
Since early in the coronavirus disease 2019 (COVID-19) pandemic, there has been interest in using artificial intelligence methods to predict COVID-19 infection status based on vocal audio signals, for example cough recordings. However, existing studies have limitations in terms of data collection and of the assessment of the performances of the proposed predictive models. This paper rigorously assesses state-of-the-art machine learning techniques used to predict COVID-19 infection status based on vocal audio signals, using a dataset collected by the UK Health Security Agency. This dataset includes acoustic recordings and extensive study participant meta-data. We provide guidelines on testing the performance of methods to classify COVID-19 infection status based on acoustic features and we discuss how these can be extended more generally to the development and assessment of predictive methods based on public health datasets.
- Published
- 2022
5. Audio-based AI classifiers show no evidence of improved COVID-19 screening over simple symptoms checkers
- Author
-
Coppock, Harry, Nicholson, George, Kiskin, Ivan, Koutra, Vasiliki, Baker, Kieran, Budd, Jobie, Payne, Richard, Karoune, Emma, Hurley, David, Titcomb, Alexander, Egglestone, Sabrina, Tendero Cañadas, Ana, Butler, Lorraine, Jersakova, Radka, Mellor, Jonathon, Patel, Selina, Thornley, Tracey, Diggle, Peter, Richardson, Sylvia, Packham, Josef, Schuller, Björn W., Pigoli, Davide, Gilmour, Steven, Roberts, Stephen, and Holmes, Chris
- Published
- 2024
- Full Text
- View/download PDF
6. Go local: The key to controlling the COVID-19 pandemic in the post lockdown era
- Author
-
Bennett, Isabel, Budd, Jobie, Manning, Erin M., Manley, Ed, Zhuang, Mengdie, Cox, Ingemar J., Short, Michael, Johnson, Anne M., Pillay, Deenan, and McKendry, Rachel A.
- Subjects
Computer Science - Computers and Society - Abstract
The UK government announced its first wave of lockdown easing on 10 May 2020, two months after the non-pharmaceutical measures to reduce the spread of COVID-19 were first introduced on 23 March 2020. Analysis of reported case rate data from Public Health England and aggregated and anonymised crowd level mobility data shows variability across local authorities in the UK. A locality-based approach to lockdown easing is needed, enabling local public health and associated health and social care services to rapidly respond to emerging hotspots of infection. National level data will hide an increasing heterogeneity of COVID-19 infections and mobility, and new ways of real-time data presentation to the public are required. Data sources (including mobile) allow for faster visualisation than more traditional data sources, and are part of a wider trend towards near real-time analysis of outbreaks needed for timely, targeted local public health interventions. Real time data visualisation may give early warnings of unusual levels of activity which warrant further investigation by local public health authorities., Comment: 6 pages, 3 figures
- Published
- 2020
7. Lateral flow test engineering and lessons learned from COVID-19
- Author
-
Budd, Jobie, Miller, Benjamin S., Weckman, Nicole E., Cherkaoui, Dounia, Huang, Da, Decruz, Alyssa Thomas, Fongwen, Noah, Han, Gyeo-Re, Broto, Marta, Estcourt, Claudia S., Gibbs, Jo, Pillay, Deenan, Sonnenberg, Pam, Meurant, Robyn, Thomas, Michael R., Keegan, Neil, Stevens, Molly M., Nastouli, Eleni, Topol, Eric J., Johnson, Anne M., Shahmanesh, Maryam, Ozcan, Aydogan, Collins, James J., Fernandez Suarez, Marta, Rodriguez, Bill, Peeling, Rosanna W., and McKendry, Rachel A.
- Published
- 2023
- Full Text
- View/download PDF
8. Assessing the Performance of Machine Learning Methods Trained on Public Health Observational Data: A Case Study From COVID‐19.
- Author
-
Pigoli, Davide, Baker, Kieran, Budd, Jobie, Butler, Lorraine, Coppock, Harry, Egglestone, Sabrina, Gilmour, Steven G., Holmes, Chris, Hurley, David, Jersakova, Radka, Kiskin, Ivan, Koutra, Vasiliki, Mellor, Jonathon, Nicholson, George, Packham, Joe, Patel, Selina, Payne, Richard, Roberts, Stephen J., Schuller, Björn W., and Tendero‐Cañadas, Ana
- Subjects
COVID-19 ,MACHINE learning ,MACHINE performance ,PREDICTION models ,EVALUATION methodology - Abstract
From early in the coronavirus disease 2019 (COVID‐19) pandemic, there was interest in using machine learning methods to predict COVID‐19 infection status based on vocal audio signals, for example, cough recordings. However, early studies had limitations in terms of data collection and of how the performances of the proposed predictive models were assessed. This article describes how these limitations have been overcome in a study carried out by the Turing‐RSS Health Data Laboratory and the UK Health Security Agency. As part of the study, the UK Health Security Agency collected a dataset of acoustic recordings, SARS‐CoV‐2 infection status and extensive study participant meta‐data. This allowed us to rigorously assess state‐of‐the‐art machine learning techniques to predict SARS‐CoV‐2 infection status based on vocal audio signals. The lessons learned from this project should inform future studies on statistical evaluation methods to assess the performance of machine learning techniques for public health tasks. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
9. Deep learning of HIV field-based rapid tests
- Author
-
Turbé, Valérian, Herbst, Carina, Mngomezulu, Thobeka, Meshkinfamfard, Sepehr, Dlamini, Nondumiso, Mhlongo, Thembani, Smit, Theresa, Cherepanova, Valeriia, Shimada, Koki, Budd, Jobie, Arsenov, Nestor, Gray, Steven, Pilay, Deenan, Herbst, Kobus, Shahmanesh, Maryam, and McKendry, Rachel A.
- Subjects
Medical tests -- Technology application ,Machine learning -- Usage ,HIV infection -- Diagnosis ,Technology application ,Biological sciences ,Health - Abstract
Although deep learning algorithms show increasing promise for disease diagnosis, their use with rapid diagnostic tests performed in the field has not been extensively tested. Here we use deep learning to classify images of rapid human immunodeficiency virus (HIV) tests acquired in rural South Africa. Using newly developed image capture protocols with the Samsung SM-P585 tablet, 60 fieldworkers routinely collected images of HIV lateral flow tests. From a library of 11,374 images, deep learning algorithms were trained to classify tests as positive or negative. A pilot field study of the algorithms deployed as a mobile application demonstrated high levels of sensitivity (97.8%) and specificity (100%) compared with traditional visual interpretation by humans--experienced nurses and newly trained community health worker staff--and reduced the number of false positives and false negatives. Our findings lay the foundations for a new paradigm of deep learning-enabled diagnostics in low- and middle-income countries, termed REASSURED diagnostics.sup.1, an acronym for real-time connectivity, ease of specimen collection, affordable, sensitive, specific, user-friendly, rapid, equipment-free and deliverable. Such diagnostics have the potential to provide a platform for workforce training, quality assurance, decision support and mobile connectivity to inform disease control strategies, strengthen healthcare system efficiency and improve patient outcomes and outbreak management in emerging infections. In a pilot field study conducted in rural South Africa, deep learning algorithms can accurately classify rapid HIV tests as positive or negative, highlighting the potential of deep learning-enabled diagnostics for use in low- and middle-income countries., Author(s): Valérian Turbé [sup.1] , Carina Herbst [sup.2] , Thobeka Mngomezulu [sup.2] , Sepehr Meshkinfamfard [sup.1] , Nondumiso Dlamini [sup.2] , Thembani Mhlongo [sup.2] , Theresa Smit [sup.2] , Valeriia [...]
- Published
- 2021
- Full Text
- View/download PDF
10. Digital technologies in the public-health response to COVID-19
- Author
-
Budd, Jobie, Miller, Benjamin S., Manning, Erin M., Lampos, Vasileios, Zhuang, Mengdie, Edelstein, Michael, and Rees, Geraint
- Subjects
Epidemics -- Control ,Information technology -- Usage -- Health aspects ,Contact tracing -- Technology application -- Methods -- Usage -- Health aspects ,Patient monitoring -- Technology application -- Methods -- Health aspects -- Usage ,Public health administration -- Technology application -- Usage -- Methods -- Health aspects ,Information technology ,Technology application ,Biological sciences ,Health - Abstract
Digital technologies are being harnessed to support the public-health response to COVID-19 worldwide, including population surveillance, case identification, contact tracing and evaluation of interventions on the basis of mobility data and communication with the public. These rapid responses leverage billions of mobile phones, large online datasets, connected devices, relatively low-cost computing resources and advances in machine learning and natural language processing. This Review aims to capture the breadth of digital innovations for the public-health response to COVID-19 worldwide and their limitations, and barriers to their implementation, including legal, ethical and privacy barriers, as well as organizational and workforce barriers. The future of public health is likely to become increasingly digital, and we review the need for the alignment of international strategies for the regulation, evaluation and use of digital technologies to strengthen pandemic management, and future preparedness for COVID-19 and other infectious diseases. The COVID-19 pandemic has resulted in an accelerated development of applications for digital health, including symptom monitoring and contact tracing. Their potential is wide ranging and must be integrated into conventional approaches to public health for best effect., Author(s): Jobie Budd [sup.1] [sup.2] , Benjamin S. Miller [sup.1] , Erin M. Manning [sup.1] , Vasileios Lampos [sup.3] , Mengdie Zhuang [sup.4] , Michael Edelstein [sup.5] , Geraint Rees [...]
- Published
- 2020
- Full Text
- View/download PDF
11. Taking connected mobile-health diagnostics of infectious diseases to the field
- Author
-
Wood, Christopher S., Thomas, Michael R., Budd, Jobie, Mashamba-Thompson, Tivani P., Herbst, Kobus, Pillay, Deenan, and Peeling, Rosanna W.
- Subjects
Mobile applications -- Usage -- Health aspects ,Infection -- Diagnosis ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Mobile health, or 'mHealth', is the application of mobile devices, their components and related technologies to healthcare. It is already improving patients' access to treatment and advice. Now, in combination with internet-connected diagnostic devices, it offers novel ways to diagnose, track and control infectious diseases and to improve the efficiency of the health system. Here we examine the promise of these technologies and discuss the challenges in realizing their potential to increase patients' access to testing, aid in their treatment and improve the capability of public health authorities to monitor outbreaks, implement response strategies and assess the impact of interventions across the world. Combining mobile phone technologies with infectious disease diagnostics can increase patients' access to testing and treatment and provide public health authorities with new ways to monitor and control outbreaks of infectious diseases., Author(s): Christopher S. Wood [sup.1] [sup.2] [sup.3] [sup.4] , Michael R. Thomas [sup.1] [sup.2] [sup.3] , Jobie Budd [sup.5] , Tivani P. Mashamba-Thompson [sup.6] , Kobus Herbst [sup.7] , Deenan [...]
- Published
- 2019
- Full Text
- View/download PDF
12. Investigating Inequalities in Patient Outcomes for First Episode Psychosis
- Author
-
Nicholls, Dasha, primary, Budd, Jobie, additional, Nunn, Philippa, additional, French, Paul, additional, Smith, Jo, additional, Gupta, Veenu, additional, Holdship, Jonathan, additional, and Quirk, Alan, additional
- Published
- 2023
- Full Text
- View/download PDF
13. Investigating inequalities in patient outcomes for first-episode psychosis.
- Author
-
Nicholls D, Budd J, Nunn P, French P, Smith J, Gupta V, Holdship J, and Quirk A
- Abstract
Background: Understanding inequalities in outcomes between demographic groups is a necessary step in addressing them in clinical care. Inequalities in treatment uptake between demographic groups may explain disparities in outcomes in people with first-episode psychosis (FEP)., Aims: To investigate disparities between broad demographic groups in symptomatic improvement in patients with FEP and their relationship to treatment uptake., Method: We used data from 6813 patients from the 2021-2022 National Clinical Audit of Psychosis data-set. Data were grouped by category type to obtain mean outcomes before adjustment to see whether disparities in outcomes remained after differences in treatment uptake had been accounted for. After matching, the average effect of each demographic variable in terms of outcome change was calculated. Moderator effects on specific treatments were investigated using interaction terms in a regression model., Results: Observational results showed that patients aged 18-24 years were less likely to improve in outcome, unless adjusted for intervention uptake. Patients classified as Black and Black British were less likely to improve in outcome (moderation effect 0.04, 95% CI 0-0.07) after adjusting for treatment take-up and demographic factors. Regression analysis showed the general positive effect of supported employment interventions in improving outcomes (coefficient -0.13, 95% CI -0.07 to -0.18, P < 0.001), and moderator analysis suggested targeting particular groups for interventions., Conclusions: Inequalities in treatment uptake and psychotic symptom outcome of FEP by social and demographic factors require monitoring over time. Our analysis provides a framework for monitoring health inequalities across national clinical audits in the UK.
- Published
- 2024
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.