16 results on '"Buchman G"'
Search Results
2. 426 cGMP production of a chimeric virus-like particle vaccine (RG1-VLP) for prevention of HPV-associated cancers
- Author
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Kirnbauer, R., primary, Buchman, G., additional, Fisher, M., additional, White, J., additional, Kennedy, M., additional, Sei, S., additional, Schellenbacher, C., additional, Roden, R.B., additional, and Shoemaker, R., additional
- Published
- 2016
- Full Text
- View/download PDF
3. Selective RNA amplification: a novel method using dUMP-containing primers and uracil DNA glycosylase.
- Author
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Buchman, G W, primary, Schuster, D M, additional, and Rashtchian, A, additional
- Published
- 1993
- Full Text
- View/download PDF
4. Differential incorporation of biotinylated nucleotides by terminal deoxynucleotidyl transferase
- Author
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Flickinger, J.L., primary, Gebeyehu, G., additional, Buchman, G., additional, and Rashtchian, A., additional
- Published
- 1992
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5. Structure, expression, and evolution of a gene encoding the precursor of nisin, a small protein antibiotic.
- Author
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Buchman, G W, Banerjee, S, and Hansen, J N
- Abstract
We have cloned and sequenced a gene (spaN) from Streptococcus lactis ATCC 11454 which encodes the peptide precursor of the small protein antibiotic nisin. The encoded precursor is 57 amino acids long, with a 23-residue leader region and a 34-residue structural region. The structural region contains serines, threonines, and cysteines at exactly the positions required to give mature nisin by a series of post-translational modifications involving dehydration of serines and threonines to dehydro forms, and cross-linking with cysteine residues. S1 mapping revealed a 267-nucleotide transcript of the nisin gene that is expressed during vegetative growth and stationary phase. It has a half-life of 7-10 min. The absence of an identifiable promoter or rho-independent terminator and the detection of two different 5′-ends of the transcript suggested it is a processing product from a larger RNA. This may represent a polycistronic mRNA which may also encode proteins involved in processing the nisin precursor peptide. Open reading frames were found in regions flanking the nisin gene. The one downstream had a ribosome binding site and appeared to be transcribed by read-through from the nisin gene. The one upstream had significant homology to a putative transposase from the Escherichia coli IS2 insertion element. Comparison of gene sequence homologies between nisin and the other lanthionine antibiotics, subtilin and epidermin, indicated that they all evolved from a common ancestor. Corresponding leader peptide sequences showed mediocre amino acid homology, but nearly perfect hydropathic homologies, suggesting a common function. It is proposed that this function includes recognition signals or other information required for post-translational processing.
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- 1988
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6. Lung transplantation in patients with cystic fibrosis: The Israeli experience
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Dario Prais, Raviv, Y., Shitrit, D., Yellin, A., Sahar, G., Bendayan, D., Yahav, Y., Efrati, O., Reichart, N., Blau, H., Bakal, I., Buchman, G., Saute, M., Vidne, B., and Kramer, M. R.
7. Modification of membrane sulfhydryl groups in bacteriostatic action of nitrite
- Author
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Buchman, G W, primary and Hansen, J N, additional
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- 1987
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8. Assembly and cloning of coding sequences for neurotrophic factors directly from genomic DNA using polymerase chain reaction and uracil DNA glycosylase
- Author
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Booth, P. M., Buchman, G. W., and Rashtchian, A.
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- 1994
- Full Text
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9. Epitope recognition in HLA-DR3 transgenic mice immunized to TSH-R protein or peptides.
- Author
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Inaba H, Moise L, Martin W, De Groot AS, Desrosiers J, Tassone R, Buchman G, Akamizu T, and De Groot LJ
- Subjects
- Amino Acid Sequence, Animals, Antibodies immunology, Antibodies metabolism, Binding Sites genetics, Enzyme-Linked Immunosorbent Assay, Epitopes metabolism, Female, Graves Disease immunology, Graves Disease metabolism, Graves Disease therapy, HLA-DR3 Antigen genetics, HLA-DR3 Antigen metabolism, Humans, Immune Sera immunology, Immune Sera metabolism, Immunization, Male, Mice, Mice, Transgenic, Molecular Sequence Data, Mutation, Peptide Fragments metabolism, Protein Binding, Receptors, Antigen, T-Cell immunology, Receptors, Antigen, T-Cell metabolism, Receptors, Thyrotropin chemistry, Receptors, Thyrotropin genetics, Recombinant Proteins immunology, Recombinant Proteins metabolism, Spleen cytology, Spleen immunology, Spleen metabolism, Epitopes immunology, HLA-DR3 Antigen immunology, Peptide Fragments immunology, Receptors, Thyrotropin immunology
- Abstract
Development of Graves' disease is related to HLA-DR3. The extracellular domain (ECD) of human TSH receptor (hTSH-R) is a crucial antigen in Graves' disease. hTSH-R peptide 37 (amino acids 78-94) is an important immunogenic peptide in DR3 transgenic mice immunized to hTSH-R. This study examined the epitope recognition in DR3 transgenic mice immunized to hTSH-R protein and evaluated the ability of a mutant hTSH-R peptide to attenuate the immunogenicity of hTSH-R peptide 37. DR3 transgenic mice were immunized to recombinant hTSH-R-ECD protein or peptides. A mutant hTSH-R 37 peptide (ISRIYVSIDATLSQLES: 37 m), in which DR3 binding motif position 5 was mutated V>A, and position 8 Q>S, was synthesized. 37 m should bind to HLA-DR3 but not bind T cell receptors. DR3 transgenic mice were immunized to hTSH-R 37 and 37 m. Mice immunized to hTSH-R-ECD protein developed strong anti-hTSH-R antibody, and antisera reacted strongly with hTSH-R peptides 1-5 (20-94), 21 (258-277), 41 (283-297), 36 (376-389), and 31 (399-418). Strikingly, antisera raised to hTSH-R peptide 37 bound to hTSH-R peptides 1-7 (20-112), 10 (132-50), 33 (137-150), 41, 23 (286-305), 24 (301-320), 36, and 31 as well as to hTSH-R-ECD protein. Both antibody titers to hTSH-R 37 and reaction of splenocytes to hTSH-R 37 were significantly reduced in mice immunized to hTSH-R 37 plus 37 m, compared with mice immunized to hTSH-R 37 alone. The ability of immunization to a single peptide to induce antibodies that bind hTSH-R-ECD protein, and multiple unrelated peptides, is a unique observation. Immunogenic reaction to hTSH-R peptide 37 was partially suppressed by 37 m, and this may contribute to immunotherapy of autoimmune thyroid disease.
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- 2013
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10. Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae.
- Author
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Greenblatt HM, Otto TC, Kirkpatrick MG, Kovaleva E, Brown S, Buchman G, Cerasoli DM, and Sussman JL
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- Animals, Carboxylesterase genetics, Carboxylesterase isolation & purification, Carboxylesterase metabolism, Cell Line, Humans, Hydrolysis, Larva genetics, Larva metabolism, Models, Molecular, Moths genetics, Moths metabolism, Protein Structure, Quaternary, Protein Structure, Tertiary, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins isolation & purification, Recombinant Proteins metabolism, Carboxylesterase chemistry
- Abstract
The use of whole insect larvae as a source of recombinant proteins offers a more cost-effective method of producing large quantities of human proteins than conventional cell-culture approaches. Human carboxylesterase 1 has been produced in and isolated from whole Trichoplusia ni larvae. The recombinant protein was crystallized and its structure was solved to 2.2 resolution. The results indicate that the larvae-produced enzyme is essentially identical to that isolated from cultured Sf21 cells, supporting the use of this expression system to produce recombinant enzymes for crystallization studies., (© 2012 International Union of Crystallography)
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- 2012
- Full Text
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11. Phenol-oxidizing laccases from the termite gut.
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Coy MR, Salem TZ, Denton JS, Kovaleva ES, Liu Z, Barber DS, Campbell JH, Davis DC, Buchman GW, Boucias DG, and Scharf ME
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- Animals, Insect Proteins genetics, Intestines enzymology, Isoptera classification, Isoptera genetics, Isoptera metabolism, Laccase genetics, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Insect Proteins metabolism, Isoptera enzymology, Laccase metabolism, Phenol metabolism
- Abstract
cDNAs encoding two gut laccase isoforms (RfLacA and RfLacB) were sequenced from the termite Reticulitermes flavipes. Phylogenetic analyses comparing translated R. flavipes laccases to 67 others from prokaryotes and eukaryotes indicate that the R. flavipes laccases are evolutionarily unique. Alignments with crystallography-verified laccases confirmed that peptide motifs involved in metal binding are 100% conserved in both isoforms. Laccase transcripts and phenoloxidase activity were most abundant in symbiont-free salivary gland and foregut tissue, verifying that the genes and activities are host-derived. Using a baculovirus-insect expression system, the two isoforms were functionally expressed with histidine tags and purified to near homogeneity. ICP-MS (inductively coupled plasma - mass spectrometry) analysis of RfLacA identified bound metals consisting mainly of copper (∼4 copper molecules per laccase protein molecule and ∼3 per histidine tag) with lesser amounts of calcium, manganese and zinc. Both recombinant enzyme preparations showed strong activity towards the lignin monomer sinapinic acid and four other phenolic substrates. By contrast, both isoforms displayed much lower or no activity against four melanin precursors, suggesting that neither isoform is involved in integument formation. Modification of lignin alkali by the recombinant RfLacA preparation was also observed. These findings provide evidence that R. flavipes gut laccases are evolutionarily distinct, host-derived, produced in the salivary gland, secreted into the foregut, bind copper, and play a role in lignocellulose digestion. These findings contribute to a better understanding of termite digestion and gut physiology, and will assist future translational studies that examine the contributions of individual termite enzymes in lignocellulose digestion., (Copyright © 2010 Elsevier Ltd. All rights reserved.)
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- 2010
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12. Purification and characterization of functional human paraoxonase-1 expressed in Trichoplusia ni larvae.
- Author
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Otto TC, Kasten SA, Kovaleva E, Liu Z, Buchman G, Tolosa M, Davis D, Smith JR, Balcerzak R, Lenz DE, and Cerasoli DM
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- Animals, Aryldialkylphosphatase genetics, Aryldialkylphosphatase isolation & purification, Baculoviridae genetics, Baculoviridae physiology, Chlorpyrifos metabolism, Gene Expression, Humans, Hydrolysis, Kinetics, Larva genetics, Larva virology, Lepidoptera virology, Organothiophosphorus Compounds chemistry, Organothiophosphorus Compounds metabolism, Pesticides metabolism, Stereoisomerism, Substrate Specificity, Aryldialkylphosphatase biosynthesis, Aryldialkylphosphatase metabolism, Lepidoptera genetics
- Abstract
Human serum paraoxonase-1 (HuPON1) is difficult to either purify from plasma or functionally express in high yield from recombinant sources. Here, we describe the characterization of functional HuPON1 expressed and purified from Trichoplusia ni (T. ni) larvae infected with an orally active form of baculovirus. SDS-PAGE and anti-HuPON1 Western blot analyses yielded only three bands of approximately 41, 42, and 44 kDa. MALDI-TOF confirmed the identity of each of these bands as HuPON1 with greater than 95% confidence. These isoforms result from differential glycosylation of the enzyme as indicated by peptide mapping, mass analysis, and PNGase F deglycosylation experiments. Recombinant insect-produced HuPON1 hydrolyzed phenyl acetate, paraoxon, and the nerve agents GF, VX, and VR. The enzyme had dramatic stereoselectivity for the P+ isomers of VX and VR. T. ni larvae expressing HuPON1 were remarkably resistant to the pesticide chlorpyrifos. Together, these results demonstrate that the caterpillar of the T. ni moth can be used as an expression system to produce large quantities of functional recombinant HuPON1. Insect production of HuPON1 may provide a source for both in vitro enzymatic and crystallographic studies and in vivo stability and anti-nerve agent efficacy testing., (Published by Elsevier Ireland Ltd.)
- Published
- 2010
- Full Text
- View/download PDF
13. Immune response of mice transgenic for human histocompatibility leukocyte Antigen-DR to human thyrotropin receptor-extracellular domain.
- Author
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Inaba H, Pan D, Shin YH, Martin W, Buchman G, and De Groot LJ
- Subjects
- Amino Acid Sequence, Animals, Autoantibodies genetics, Autoantibodies immunology, B-Lymphocytes immunology, Cell Proliferation, Enzyme-Linked Immunosorbent Assay, Epitopes, B-Lymphocyte genetics, Epitopes, B-Lymphocyte immunology, Epitopes, T-Lymphocyte genetics, HLA-DR2 Antigen genetics, HLA-DR3 Antigen genetics, Humans, Immunization, Mice, Mice, Transgenic, Molecular Sequence Data, Receptors, Thyrotropin genetics, Staining and Labeling, T-Lymphocytes immunology, Thyroid Gland immunology, Epitopes, T-Lymphocyte immunology, HLA-DR2 Antigen immunology, HLA-DR3 Antigen immunology, Receptors, Thyrotropin administration & dosage, Receptors, Thyrotropin immunology
- Abstract
Background: Hyperthyroidism of Graves' disease is caused by auto-antibodies to human thyrotropin receptor (hTSH-R). To elucidate important T-cell epitopes in TSH-R, we studied three models of immunity to TSH-R in mice., Methods: Mice transgenic for histocompatibility leukocyte antigen DR3 or DR2 were immunized with cDNA for hTSH-R-extracellular domain (hTSH-R-ECD), or hTSH-R-ECD protein, or hTSH-R peptide epitopes. Proliferative responses of immunized splenocytes to epitopes derived from the hTSH-ECD sequence, anti-TSH-R antibody responses, serum thyroxine and TSH, and thyroid histology were recorded., Results: DR3 mice responded to genomic immunization with proliferative responses to several epitopes, which increased in intensity and spread to include more epitopes, during a 6-week immunization program. DR2 transgenic mice developed weak proliferative responses. Both types of mice developed anti-TSH-R antibodies measured by enzyme-linked immunosorbent assay or TSH-binding inhibition assay in 16-60% of animals. There was evidence of weak thyroid stimulation in one group of animals. Immunization of DR3 transgenic mice to hTSH-R-ECD protein induced a striking response to an epitope with sequence ISRIYVSIDVTLQQLES (aa78-94). Immunization to peptides derived from the TSH-R-ECD sequence (including aa78-94) caused strong responses to the epitopes, and development of immune responses to several other nonoverlapping epitopes within the hTSH sequence (epitope spreading) and antibodies reacting with hTSH-R. This implies that immunization with hTSH-R epitopes produced immunity to mouse TSH-R., Conclusion: T-cell and B-cell responses to genetic immunization differ in DR3 and DR2 transgenic mice, and there is less genetic control of antibody than of T-cell responses. During both genomic and peptide epitope immunization there was evidence of epitope spreading during the immunization. Several functionally important epitopes are evident, especially aa78-94. However, if similar progressive epitope recruitment occurs in human disease, epitope-based therapy will be difficult to achieve.
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- 2009
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- View/download PDF
14. Lung transplantation in patients with cystic fibrosis: the Israeli experience.
- Author
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Prais D, Raviv Y, Shitrit D, Yellin A, Sahar G, Bendayan D, Yahav Y, Efrati O, Reichart N, Blau H, Bakal I, Buchman G, Saute M, Vidne B, and Kramer MR
- Subjects
- Actuarial Analysis, Adolescent, Adult, Bronchiolitis Obliterans etiology, Cystic Fibrosis mortality, Cystic Fibrosis physiopathology, Female, Forced Expiratory Volume, Humans, Israel, Male, Medical Records, Retrospective Studies, Survival Analysis, Cystic Fibrosis surgery, Lung Transplantation adverse effects, Lung Transplantation mortality
- Abstract
Background: Lung transplantation is a well-established therapeutic option for end-stage lung disease in cystic fibrosis. Although it confers a clear survival advantage, outcome differs among centers according to local experience, patient selection, transplantation procedure, and postoperative care., Objectives: To evaluate the national Israeli experience with lung transplantation in patients with CF., Methods: We reviewed the medical charts of all CF patients who underwent lung transplantation between January 1996 and June 2005 at the two Israeli centers that perform this procedure., Results: Eighteen transplantations were performed in 17 patients. Mean patient age at transplantation was 25.3 +/- 9.1 years, and mean duration of follow-up in survivors (n=14) was 37.2 months (range 1-113 months). The actuarial survival rate was 88% at 1 year and 74% at 5 years. Pulmonary function, expressed as percent of predicted normal forced expiratory volume in 1 sec, improved from 22.4 +/- 8.1% to 76 +/- 16.8% at one year after transplantation. Bronchiolitis obliterans syndrome was diagnosed in 5 patients (29%), of whom 2 died and 2 are currently candidates for retransplantation. Median time to onset of BOS was 34.2 months (range 17-64 months)., Conclusion: In Israel, the early and intermediate-term results of lung transplantation for cystic fibrosis are encouraging. BOS remains a major complication that threatens long-term outcome.
- Published
- 2006
15. Selective RNA amplification: a novel method using dUMP-containing primers and uracil DNA glycosylase.
- Author
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Buchman GW, Schuster DM, and Rashtchian A
- Subjects
- Base Sequence, Chromatography, Gel, DNA Primers, DNA, Viral metabolism, DNA-Directed DNA Polymerase, Electrophoresis, Polyacrylamide Gel methods, Humans, Molecular Sequence Data, Oligonucleotide Probes, Papillomaviridae genetics, Papillomaviridae isolation & purification, RNA, Viral biosynthesis, RNA, Viral isolation & purification, RNA-Directed DNA Polymerase, Ribonuclease H, Taq Polymerase, Polymerase Chain Reaction methods, RNA analysis, RNA, Viral analysis
- Abstract
The application of PCR to a wide variety of biological problems and molecular techniques has gained wide acceptance. RNA-PCR, a technique in which first-strand cDNA synthesis is followed by PCR amplification, has enabled detection and characterization of rare transcripts. One problem confronting the researcher involves specific amplification of transcribed sequences in the presence of small amounts of genomic DNA of identical sequence. We describe a novel technique, selective RNA amplification, which will specifically amplify RNA sequences in a background of homologous DNA. The method involves first-strand cDNA synthesis from a specific dUMP-containing oligonucleotide that contains unique user-defined 5' sequence (adapter sequence) not found in the message of interest. RNA template is degraded using RNase H, which is specific for RNA/DNA hybrids. This is followed by second-strand synthesis using a gene-specific primer (GSP). The original adapter primer is digested with uracil DNA glycosylase (UDG) to prevent its participation in subsequent amplification. PCR is then performed using the GSP and a second primer corresponding to the unique adapter sequence. In this paper, we apply this method to the amplification of RNA derived from human papilloma virus sequences. Using Southern analysis, we demonstrate specific amplification of 10(5) molecules of an in vitro-transcribed RNA. Denatured DNA of identical sequence and concentration was not amplified using the RNA-specific method. The method could eliminate the need for stringent purification of RNA and enables amplification of rare messages from RNA preparations containing homologous DNA of identical sequence and size.
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- 1993
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16. Uracil DNA glycosylase-mediated cloning of polymerase chain reaction-amplified DNA: application to genomic and cDNA cloning.
- Author
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Rashtchian A, Buchman GW, Schuster DM, and Berninger MS
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- Animals, Base Sequence, Cloning, Molecular, Deoxyuracil Nucleotides, Gene Amplification, Genome, Glyceraldehyde-3-Phosphate Dehydrogenases genetics, Molecular Sequence Data, Rats, Repetitive Sequences, Nucleic Acid, Uracil-DNA Glycosidase, DNA genetics, DNA Glycosylases, N-Glycosyl Hydrolases, Polymerase Chain Reaction methods
- Abstract
A simple and rapid method for cloning of amplification products directly from the polymerase chain reaction (PCR) has been developed. The method is based on the addition of a 12-base dUMP-containing sequence (CUACUACUACUA) to the 5' end of PCR primers. Incorporation of these primers during PCR results in the selective placement of dUMP residues into the 5' end of amplification products. Selective degradation of the dUMP residues in the PCR products with uracil DNA glycosylase (UDG) disrupts base pairing at the termini and generates 3' overhangs. Annealing of 3' protruding termini to vector DNA containing complementary 3' ends results in chimeric molecules which can be transformed, with high efficiency, without in vitro ligation. Directional cloning of PCR products has also been accomplished by incorporating different dU-containing sequences at the end of each PCR primer. Substitution of all dT residues in PCR primers with dU eliminates cloning of aberrant "primer dimer" products and enriches cloning of genuine PCR products. The method has been applied to cloning of inter-Alu DNA sequences from human placental DNA. Using a single primer, DNA sequences between appropriately oriented Alu sequences were amplified and cloned. Cloning of cDNA for the glyceraldehyde-3'-phosphate dehydrogenase gene from rat brain RNA was also demonstrated. The 3' end region of this gene was amplified by the 3' RACE method and the amplified DNA was cloned after UDG digestion. Characterization of cloned DNAs by sequence analysis showed accurate repair of the cloning junctions. The ligase-free cloning method with UDG should prove to be a widely applicable procedure for rapid cloning of PCR-amplified DNA.
- Published
- 1992
- Full Text
- View/download PDF
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