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The article demonstrates the Brix content of melon fruits grafted with different varieties of rootstock using Support Vector Regression (SVR) and Multiple Linear Regression (MLR) model approaches. The analysis yielded primary fruit biochemical measurements on the following rootstocks, Sphinx, Albatros, and Dinero: nitrogen, phosphorus, potassium, calcium, and magnesium. Established models were evaluated with Mean Absolute Error (MAE), Mean Absolute Percentage Error (MAPE), Mean Square Error (MSE), Root Mean Square Error (RMSE), and Coefficient of Determination (R2) metrics. In the test section, the results of the MLR model were calculated as MAE: 0.0728, MAPE: 0.0117, MSE: 0.0088, RMSE: 0.0936, and R2: 0.9472, while the results of the SVR model were calculated as MAE: 0.0334, MAPE: 0.0054, MSE: 0.0016, RMSE: 0.0398, and R2: 0.9904. Despite both models performing well, the SVR model showed superior accuracy, outperforming MLR by 54% to 82% in terms of predictions. The relationships between Brix levels and various nutrients, such as sucrose, glucose, and fructose, were found to be strong, while titratable acidity had a minimal effect. SVR was found to be a more reliable, non-destructive method for melon quality assessment. These findings revealed the relationship between Brix and sugar levels on melon quality. The study highlights the potential of these machine learning models in optimizing the rootstock effect and managing melon cultivation to improve fruit quality.