1,373 results on '"Brown, Matthew P."'
Search Results
2. Predicting Invasiveness in Lepidic Pattern Adenocarcinoma of Lung: Analysis of Visual Semantic and Radiomic Features.
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Johnson, Sean, Tabatabaei, Seyed, Kim, Grace, Villegas, Bianca, Brown, Matthew, Genshaft, Scott, Suh, Robert, Barjaktarevic, Igor, Wallace, William, and Abtin, Fereidoun
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invasiveness prediction ,lepidic predominant adenocarcinoma ,lung biopsy ,radiomic features ,semantic features ,Humans ,Lung Neoplasms ,Adenocarcinoma of Lung ,Male ,Middle Aged ,Female ,Tomography ,X-Ray Computed ,Aged ,Neoplasm Invasiveness ,Image-Guided Biopsy ,Semantics ,Radiomics - Abstract
OBJECTIVES: To differentiate invasive lepidic predominant adenocarcinoma (iLPA) from adenocarcinoma in situ (AIS)/minimally invasive adenocarcinoma (MIA) of lung utilizing visual semantic and computer-aided detection (CAD)-based texture features on subjects initially diagnosed as AIS or MIA with CT-guided biopsy. MATERIALS AND METHODS: From 2011 to 2017, all patients with CT-guided biopsy results of AIS or MIA who subsequently underwent resection were identified. CT scan before the biopsy was used to assess visual semantic and CAD texture features, totaling 23 semantic and 95 CAD-based quantitative texture variables. The least absolute shrinkage and selection operator (LASSO) method or forward selection was used to select the most predictive feature and combination of semantic and texture features for detection of invasive lung adenocarcinoma. RESULTS: Among the 33 core needle-biopsied patients with AIS/MIA pathology, 24 (72.7%) had invasive LPA and 9 (27.3%) had AIS/MIA on resection. On CT, visual semantic features included 21 (63.6%) part-solid, 5 (15.2%) pure ground glass, and 7 (21.2%) solid nodules. LASSO selected seven variables for the model, but all were not statistically significant. Volume was found to be statistically significant when assessing the correlation between independent variables using the backward selection technique. The LASSO selected tumor_Perc95, nodule surround, small cyst-like spaces, and volume when assessing the correlation between independent variables. CONCLUSIONS: Lung biopsy results showing noninvasive LPA underestimate invasiveness. Although statistically non-significant, some semantic features showed potential for predicting invasiveness, with septal stretching absent in all noninvasive cases, and solid consistency present in a significant portion of invasive cases.
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- 2024
3. OmniNOCS: A unified NOCS dataset and model for 3D lifting of 2D objects
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Krishnan, Akshay, Kundu, Abhijit, Maninis, Kevis-Kokitsi, Hays, James, and Brown, Matthew
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Robotics - Abstract
We propose OmniNOCS, a large-scale monocular dataset with 3D Normalized Object Coordinate Space (NOCS) maps, object masks, and 3D bounding box annotations for indoor and outdoor scenes. OmniNOCS has 20 times more object classes and 200 times more instances than existing NOCS datasets (NOCS-Real275, Wild6D). We use OmniNOCS to train a novel, transformer-based monocular NOCS prediction model (NOCSformer) that can predict accurate NOCS, instance masks and poses from 2D object detections across diverse classes. It is the first NOCS model that can generalize to a broad range of classes when prompted with 2D boxes. We evaluate our model on the task of 3D oriented bounding box prediction, where it achieves comparable results to state-of-the-art 3D detection methods such as Cube R-CNN. Unlike other 3D detection methods, our model also provides detailed and accurate 3D object shape and segmentation. We propose a novel benchmark for the task of NOCS prediction based on OmniNOCS, which we hope will serve as a useful baseline for future work in this area. Our dataset and code will be at the project website: https://omninocs.github.io., Comment: Accepted to ECCV 2024, project website: https://omninocs.github.io
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- 2024
4. Integration of Data Reduction and Near Real-Time Archiving into the Keck Observing Model
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Brodheim, Max, O'Meara, John, Mader, Jeffrey A., Berriman, G. Bruce, Brown, Matthew, Furhman, Lucas, Tucker, Tyler, Gelino, Christopher R., Lynn, Meca S., and Swain, Melanie A.
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
The W. M. Keck Observatory is welcoming a new era where data reduction and archiving are tightly integrated into our observing model, under the auspices of the Observatory's Data Services Initiative (DSI) project. While previously the Keck Observatory Archive (KOA) archived minimally processed, raw science data the day after observing, Keck is transitioning to a model in which it archives both raw frames and reduced data in near real-time. These data will be made available to observers and collaborators immediately upon ingestion through a dedicated new interface that will support collaboration and sharing among teams, as well as stream data directly to personal computers without access to WMKO's internal networks. Both the raw and science-ready data products will be made publicly available upon the expiration of data protections., Comment: 10 pages, 5 figures, SPIE Astronomical Telescopes + Instrumentation 2022
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- 2024
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5. Antigen-driven T cell responses in rheumatic diseases: insights from T cell receptor repertoire studies
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Garrido-Mesa, Jose and Brown, Matthew A.
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- 2025
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6. Inhibition of CD226 co-stimulation suppresses diabetes development in the NOD mouse by augmenting regulatory T cells and diminishing effector T cell function
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Brown, Matthew E., Thirawatananond, Puchong, Peters, Leeana D., Kern, Elizabeth J., Vijay, Sonali, Sachs, Lindsey K., Posgai, Amanda L., Brusko, Maigan A., Shapiro, Melanie R., Mathews, Clayton E., Bacher, Rhonda, and Brusko, Todd M.
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- 2025
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7. Leveraging artificial intelligence and machine learning to accelerate discovery of disease-modifying therapies in type 1 diabetes
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Shapiro, Melanie R., Tallon, Erin M., Brown, Matthew E., Posgai, Amanda L., Clements, Mark A., and Brusko, Todd M.
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- 2024
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8. Blanks: Data, Method, and the British American Print Shop
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Brown, Matthew P.
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- 2017
9. Innovations and advances in instrumentation at the W. M. Keck Observatory, vol. III
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Kassis, Marc F, Alvarez, Carlos, Baker, Ashley D, Bailey, John I, Banyal, Ravinder K, Bertz, Rob, Beichman, Charles A, Bouchez, Antonin H, Brown, Aaron M, Brown, Matthew K, Bundy, Kevin A, Campbell, Randall D, Chun, Mark R, Cooke, Jeffrey, Deich, William T, Dekany, Richard G, Doppmann, Greg, Fassnacht, Christopher, Ferrara, Jocelyn, Fitzgerald, Michael P, Fremling, Christoffer, Fucik, Jason R, Gibson, Steven R, Gillingham, Peter R, Glazebrook, Karl, Greffe, Timothee, Halverson, Samuel P, Hill, Grant M, Hillenbrand, Lynne, Hinz, Philip M, Holden, Bradford P, Howard, Andrew W, Huber, Daniel, Jones, Tucker A, Jordan, Carolyn, Jovanovic, Nemanja J, Kain, Isabel J, Kasliwal, Mansi M, Kirby, Evan, Konopacky, Quinn M, Krishnan, Shanti, Kulkarni, Shrinivas R, Kupke, Renate, Lanclos, Kyle, Larkin, James E, Lilley, Scott J, Lingvay, Larry, Lu, Jessica R, Lyke, James E, MacDonald, Nicholas, Martin, Christopher, Mather, John C, Matuszewski, Mateusz, Mawet, Dimitri P, McGurk, Rosalie C, Marin, Eduardo, Meeks, Robert L, Millar-Blanchaer, Maxwell A, Nash, Reston B, Neill, James D, O'Meara, John M, Pahuja, Rishi, Peretz, Eliad, Prusinski, Nikolaus, Radovan, Matthew V, Rider, Kodi A, Roberts, Mitsuko K, Rockosi, Constance M, Rubenzahl, Ryan, Sallum, Stephanie E, Sandford, Dale, Savage, Maureen L, Skemer, Andrew J, Smith, Roger, Steidel, Charles, Steiner, Jonathan, Stelter, Richard D, Walawender, Josh, Westfall, Kyle B, Wizinowich, Peter L, Wright, Shelley A, Wold, Truman, and Zimmer, Jake
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- 2024
10. A genome-wide association analysis reveals new pathogenic pathways in gout
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Major, Tanya J., Takei, Riku, Matsuo, Hirotaka, Leask, Megan P., Sumpter, Nicholas A., Topless, Ruth K., Shirai, Yuya, Wang, Wei, Cadzow, Murray J., Phipps-Green, Amanda J., Li, Zhiqiang, Ji, Aichang, Merriman, Marilyn E., Morice, Emily, Kelley, Eric E., Wei, Wen-Hua, McCormick, Sally P. A., Bixley, Matthew J., Reynolds, Richard J., Saag, Kenneth G., Fadason, Tayaza, Golovina, Evgenia, O’Sullivan, Justin M., Stamp, Lisa K., Dalbeth, Nicola, Abhishek, Abhishek, Doherty, Michael, Roddy, Edward, Jacobsson, Lennart T. H., Kapetanovic, Meliha C., Melander, Olle, Andrés, Mariano, Pérez-Ruiz, Fernando, Torres, Rosa J., Radstake, Timothy, Jansen, Timothy L., Janssen, Matthijs, Joosten, Leo A. B., Liu, Ruiqi, Gaal, Orsolya I., Crişan, Tania O., Rednic, Simona, Kurreeman, Fina, Huizinga, Tom W. J., Toes, René, Lioté, Frédéric, Richette, Pascal, Bardin, Thomas, Ea, Hang Korng, Pascart, Tristan, McCarthy, Geraldine M., Helbert, Laura, Stibůrková, Blanka, Tausche, Anne-K., Uhlig, Till, Vitart, Véronique, Boutin, Thibaud S., Hayward, Caroline, Riches, Philip L., Ralston, Stuart H., Campbell, Archie, MacDonald, Thomas M., Nakayama, Akiyoshi, Takada, Tappei, Nakatochi, Masahiro, Shimizu, Seiko, Kawamura, Yusuke, Toyoda, Yu, Nakaoka, Hirofumi, Yamamoto, Ken, Matsuo, Keitaro, Shinomiya, Nariyoshi, Ichida, Kimiyoshi, Lee, Chaeyoung, Bradbury, Linda A., Brown, Matthew A., Robinson, Philip C., Buchanan, Russell R. C., Hill, Catherine L., Lester, Susan, Smith, Malcolm D., Rischmueller, Maureen, Choi, Hyon K., Stahl, Eli A., Miner, Jeff N., Solomon, Daniel H., Cui, Jing, Giacomini, Kathleen M., Brackman, Deanna J., Jorgenson, Eric M., Liu, Hongbo, Susztak, Katalin, Shringarpure, Suyash, So, Alexander, Okada, Yukinori, Li, Changgui, Shi, Yongyong, and Merriman, Tony R.
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- 2024
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11. On Observation and The Completion of Quantum Mechanics
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Brown, Matthew F.
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Quantum Physics ,Mathematical Physics ,81P05 - Abstract
We start with a discussion of the use of mathematics to model the real world then justify the role of Hilbert space formalism for such modelling in the general context of quantum logic. Following this, the incompleteness of the Schr\"odinger equation is discussed as well as the incompleteness of von Neumann's measurement approach \cite{vN}. Subsequently, it is shown that quantum mechanics is indeed completed by the addition of an observer, however the observer is not described in the Hamiltonian formalism but \emph{necessarily} by the quantum stochastic formalism discovered in \cite{HP}. Consequently, the complete theory of quantum mechanics appears to be the Quantum Filtering Theory \cite{ND,NLF}. Finally, it is shown how Schr\"odinger's cat may be understood as a quantum filter, providing an intuitively realistic model and an insight into how quantum filtering works., Comment: 30 pages
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- 2024
12. The Acrasis kona genome and developmental transcriptomes reveal deep origins of eukaryotic multicellular pathways
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Sheikh, Sanea, Fu, Cheng-Jie, Brown, Matthew W., and Baldauf, Sandra L.
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- 2024
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13. The effects of a digital health intervention on patient activation in chronic kidney disease
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Lightfoot, Courtney J., Wilkinson, Thomas J., Sohansoha, Gurneet K., Gillies, Clare L., Vadaszy, Noemi, Ford, Ella C., Davies, Melanie J., Yates, Thomas, Smith, Alice C., and Graham-Brown, Matthew P. M.
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- 2024
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14. Large-scale analysis of whole genome sequencing data from formalin-fixed paraffin-embedded cancer specimens demonstrates preservation of clinical utility
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Basyuni, Shadi, Heskin, Laura, Degasperi, Andrea, Black, Daniella, Koh, Gene C. C., Chmelova, Lucia, Rinaldi, Giuseppe, Bell, Steven, Grybowicz, Louise, Elgar, Greg, Memari, Yasin, Robbe, Pauline, Kingsbury, Zoya, Caldas, Carlos, Abraham, Jean, Schuh, Anna, Jones, Louise, Tischkowitz, Marc, Brown, Matthew A., Davies, Helen R., and Nik-Zainal, Serena
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- 2024
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15. The development and internal pilot trial of a digital physical activity and emotional well-being intervention (Kidney BEAM) for people with chronic kidney disease
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Young, Hannah M. L., Castle, Ellen M., Briggs, Juliet, Walklin, Christy, Billany, Roseanne E., Asgari, Elham, Bhandari, Sunil, Bishop, Nicolette, Bramham, Kate, Burton, James O., Campbell, Jackie, Chilcot, Joseph, Cooper, Nicola, Deelchand, Vashist, Graham-Brown, Matthew P. M., Haggis, Lynda, Hamilton, Alexander, Jesky, Mark, Kalra, Philip A., Koufaki, Pelagia, Macdonald, Jamie, McCafferty, Kieran, Nixon, Andrew C., Noble, Helen, Saynor, Zoe L., Taal, Maarten W., Tollitt, James, Wheeler, David C., Wilkinson, Thomas J., and Greenwood, Sharlene A.
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- 2024
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16. Circulating sphingolipids and relationship to cardiac remodelling before and following a low-energy diet in asymptomatic Type 2 Diabetes
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Brady, Emer M., Cao, Thong H., Moss, Alastair J., Athithan, Lavanya, Ayton, Sarah L., Redman, Emma, Argyridou, Stavroula, Graham-Brown, Matthew P. M., Maxwell, Colleen B., Jones, Donald J. L., Ng, Leong, Yates, Thomas, Davies, Melanie J, McCann, Gerry P., and Gulsin, Gaurav S.
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- 2024
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17. Staring at the Sun with the Keck Planet Finder: An Autonomous Solar Calibrator for High Signal-to-Noise Sun-as-a-Star Spectra
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Rubenzahl, Ryan A., Halverson, Samuel, Walawender, Josh, Hill, Grant M., Howard, Andrew W., Brown, Matthew, Ida, Evan, Tehero, Jerez, Fulton, Benjamin J., Gibson, Steven R., Kassis, Marc, Smith, Brett, Wold, Truman, and Payne, Joel
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Extreme precision radial velocity (EPRV) measurements contend with internal noise (instrumental systematics) and external noise (intrinsic stellar variability) on the road to 10 cm/s "exo-Earth" sensitivity. Both of these noise sources are well-probed using "Sun-as-a-star" RVs and cross-instrument comparisons. We built the Solar Calibrator (SoCal), an autonomous system that feeds stable, disc-integrated sunlight to the recently commissioned Keck Planet Finder (KPF) at the W. M. Keck Observatory. With SoCal, KPF acquires signal-to-noise ~1200, R = ~98,000 optical (445--870 nm) spectra of the Sun in 5~sec exposures at unprecedented cadence for an EPRV facility using KPF's fast readout mode (<16 sec between exposures). Daily autonomous operation is achieved by defining an operations loop using state machine logic. Data affected by clouds are automatically flagged using a reliable quality control metric derived from simultaneous irradiance measurements. Comparing solar data across the growing global network of EPRV spectrographs with solar feeds will allow EPRV teams to disentangle internal and external noise sources and benchmark spectrograph performance. To facilitate this, all SoCal data products are immediately available to the public on the Keck Observatory Archive. We compared SoCal RVs to contemporaneous RVs from NEID, the only other immediately public EPRV solar dataset. We find agreement at the 30-40 cm/s level on timescales of several hours, which is comparable to the combined photon-limited precision. Data from SoCal were also used to assess a detector problem and wavelength calibration inaccuracies associated with KPF during early operations. Long-term SoCal operations will collect upwards of 1,000 solar spectra per six-hour day using KPF's fast readout mode, enabling stellar activity studies at high signal-to-noise on our nearest solar-type star., Comment: 22 pages, 11 figures, accepted to Publications of the Astronomical Society of the Pacific
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- 2023
18. Module-wise Adaptive Distillation for Multimodality Foundation Models
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Liang, Chen, Yu, Jiahui, Yang, Ming-Hsuan, Brown, Matthew, Cui, Yin, Zhao, Tuo, Gong, Boqing, and Zhou, Tianyi
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Computation and Language ,Computer Science - Machine Learning - Abstract
Pre-trained multimodal foundation models have demonstrated remarkable generalizability but pose challenges for deployment due to their large sizes. One effective approach to reducing their sizes is layerwise distillation, wherein small student models are trained to match the hidden representations of large teacher models at each layer. Motivated by our observation that certain architecture components, referred to as modules, contribute more significantly to the student's performance than others, we propose to track the contributions of individual modules by recording the loss decrement after distillation each module and choose the module with a greater contribution to distill more frequently. Such an approach can be naturally formulated as a multi-armed bandit (MAB) problem, where modules and loss decrements are considered as arms and rewards, respectively. We then develop a modified-Thompson sampling algorithm named OPTIMA to address the nonstationarity of module contributions resulting from model updating. Specifically, we leverage the observed contributions in recent history to estimate the changing contribution of each module and select modules based on these estimations to maximize the cumulative contribution. We evaluate the effectiveness of OPTIMA through distillation experiments on various multimodal understanding and image captioning tasks, using the CoCa-Large model (Yu et al., 2022) as the teacher model.
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- 2023
19. Quantitative Computed Tomography Lung COVID Scores with Laboratory Markers: Utilization to Predict Rapid Progression and Monitor Longitudinal Changes in Patients with Coronavirus 2019 (COVID-19) Pneumonia.
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Kang, Da, Kim, Grace, Park, Sa-Beom, Lee, Song-I, Koh, Jeong, Brown, Matthew, Abtin, Fereidoun, Goldin, Jonathan, Lee, Jeong, and Mcnitt-Gray, Michael
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coronavirus disease 2019 (COVID-19) ,prediction ,quantitative computed tomography (CT) score ,rapid progression - Abstract
Coronavirus disease 2019 (COVID-19), is an ongoing issue in certain populations, presenting rapidly worsening pneumonia and persistent symptoms. This study aimed to test the predictability of rapid progression using radiographic scores and laboratory markers and present longitudinal changes. This retrospective study included 218 COVID-19 pneumonia patients admitted at the Chungnam National University Hospital. Rapid progression was defined as respiratory failure requiring mechanical ventilation within one week of hospitalization. Quantitative COVID (QCOVID) scores were derived from high-resolution computed tomography (CT) analyses: (1) ground glass opacity (QGGO), (2) mixed diseases (QMD), and (3) consolidation (QCON), and the sum, quantitative total lung diseases (QTLD). Laboratory data, including inflammatory markers, were obtained from electronic medical records. Rapid progression was observed in 9.6% of patients. All QCOVID scores predicted rapid progression, with QMD showing the best predictability (AUC = 0.813). In multivariate analyses, the QMD score and interleukin(IL)-6 level were important predictors for rapid progression (AUC = 0.864). With >2 months follow-up CT, remained lung lesions were observed in 21 subjects, even after several weeks of negative reverse transcription polymerase chain reaction test. AI-driven quantitative CT scores in conjugation with laboratory markers can be useful in predicting the rapid progression and monitoring of COVID-19.
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- 2024
20. Shelf Life
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Brown, Matthew P.
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- 2012
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21. Ancient Plasmodium genomes shed light on the history of human malaria
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Michel, Megan, Skourtanioti, Eirini, Pierini, Federica, Guevara, Evelyn K., Mötsch, Angela, Kocher, Arthur, Barquera, Rodrigo, Bianco, Raffaela A., Carlhoff, Selina, Coppola Bove, Lorenza, Freilich, Suzanne, Giffin, Karen, Hermes, Taylor, Hiß, Alina, Knolle, Florian, Nelson, Elizabeth A., Neumann, Gunnar U., Papac, Luka, Penske, Sandra, Rohrlach, Adam B., Salem, Nada, Semerau, Lena, Villalba-Mouco, Vanessa, Abadie, Isabelle, Aldenderfer, Mark, Beckett, Jessica F., Brown, Matthew, Campus, Franco G. R., Chenghwa, Tsang, Cruz Berrocal, María, Damašek, Ladislav, Duffett Carlson, Kellie Sara, Durand, Raphaël, Ernée, Michal, Fântăneanu, Cristinel, Frenzel, Hannah, García Atiénzar, Gabriel, Guillén, Sonia, Hsieh, Ellen, Karwowski, Maciej, Kelvin, David, Kelvin, Nikki, Khokhlov, Alexander, Kinaston, Rebecca L., Korolev, Arkadii, Krettek, Kim-Louise, Küßner, Mario, Lai, Luca, Look, Cory, Majander, Kerttu, Mandl, Kirsten, Mazzarello, Vittorio, McCormick, Michael, de Miguel Ibáñez, Patxuka, Murphy, Reg, Németh, Rita E., Nordqvist, Kerkko, Novotny, Friederike, Obenaus, Martin, Olmo-Enciso, Lauro, Onkamo, Päivi, Orschiedt, Jörg, Patrushev, Valerii, Peltola, Sanni, Romero, Alejandro, Rubino, Salvatore, Sajantila, Antti, Salazar-García, Domingo C., Serrano, Elena, Shaydullaev, Shapulat, Sias, Emanuela, Šlaus, Mario, Stančo, Ladislav, Swanston, Treena, Teschler-Nicola, Maria, Valentin, Frederique, Van de Vijver, Katrien, Varney, Tamara L., Vigil-Escalera Guirado, Alfonso, Waters, Christopher K., Weiss-Krejci, Estella, Winter, Eduard, Lamnidis, Thiseas C., Prüfer, Kay, Nägele, Kathrin, Spyrou, Maria, Schiffels, Stephan, Stockhammer, Philipp W., Haak, Wolfgang, Posth, Cosimo, Warinner, Christina, Bos, Kirsten I., Herbig, Alexander, and Krause, Johannes
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- 2024
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22. Removing grass clippings reduces bermudagrass mite (Acari: Eriophyidae) infestation during turfgrass regrowth
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Brown, Matthew S. and Chong, Juang Horng
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- 2024
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23. Unraveling the Ties that Bind: Social Anxiety is Differentially Related to Vulnerable and Grandiose Narcissistic Traits
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Villalongo Andino, Mara, Hauenstein, Neil, Stanton, Kasey, Brown, Matthew F. D., and Richey, John A.
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- 2024
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24. The Tiger's Leap and the Dog's Paw: Method, Matter, and Meaning in the History of the Book
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Brown, Matthew P.
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- 2009
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25. For values in science: Assessing recent arguments for the ideal of value-free science
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Brown, Matthew J.
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- 2024
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26. Integration and evaluation of chest X-ray artificial intelligence in clinical practice.
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Wong, Koon-Pong, Homer, Suzanne, Wei, Sindy, Yaghmai, Nazanin, Estrada Paz, Oscar, Young, Timothy, Buhr, Russell, Barjaktarevic, Igor, Shrestha, Liza, Daly, Morgan, Goldin, Jonathan, Enzmann, Dieter, and Brown, Matthew
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artificial intelligence ,chest x-ray ,clinical translation ,endotracheal tube ,user survey - Abstract
PURPOSE: To integrate and evaluate an artificial intelligence (AI) system that assists in checking endotracheal tube (ETT) placement on chest x-rays (CXRs) in clinical practice. APPROACH: In clinical use over 17 months, 214 CXR images were ordered to check ETT placement with AI assistance by intensive care unit (ICU) physicians. The system was built on the SimpleMind Cognitive AI platform and integrated into a clinical workflow. It automatically identified the ETT and checked its placement relative to the trachea and carina. The ETT overlay and misplacement alert messages generated by the AI system were compared with radiology reports as the reference. A survey study was also conducted to evaluate usefulness of the AI system in clinical practice. RESULTS: The alert messages indicating that either the ETT was misplaced or not detected had a positive predictive value of 42% (21/50) and negative predictive value of 98% (161/164) based on the radiology reports. In the survey, radiologist and ICU physician users indicated that they agreed with the AI outputs and that they were useful. CONCLUSIONS: The AI system performance in real-world clinical use was comparable to that seen in previous experiments. Based on this and physician survey results, the system can be deployed more widely at our institution, using insights gained from this evaluation to make further algorithm improvements and quality assurance of the AI system.
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- 2023
27. Multi-campaign ship and aircraft observations of marine cloud condensation nuclei and droplet concentrations.
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Sanchez, Kevin, Painemal, David, Brown, Matthew, Crosbie, Ewan, Gallo, Francesca, Hair, Johnathan, Hostetler, Chris, Jordan, Carolyn, Robinson, Claire, Scarino, Amy, Shingler, Taylor, Shook, Michael, Thornhill, Kenneth, Wiggins, Elizabeth, Winstead, Edward, Ziemba, Luke, Chambers, Scott, Williams, Alastair, Humphries, Ruhi, Keywood, Melita, Ward, Jason, Cravigan, Luke, McRobert, Ian, Flynn, Connor, Kulkarni, Gourihar, Roberts, Gregory, McFarquhar, Greg, Nenes, Athanasios, Woods, Sarah, Reid, Jeffery, Small-Griswold, Jennifer, Brooks, Sarah, Kirschler, Simon, Voigt, Christianne, Wang, Jian, Delene, David, Quinn, Patricia, Moore, Richard, and Russell, Lynn
- Abstract
In-situ marine cloud droplet number concentrations (CDNCs), cloud condensation nuclei (CCN), and CCN proxies, based on particle sizes and optical properties, are accumulated from seven field campaigns: ACTIVATE; NAAMES; CAMP2EX; ORACLES; SOCRATES; MARCUS; and CAPRICORN2. Each campaign involves aircraft measurements, ship-based measurements, or both. Measurements collected over the North and Central Atlantic, Indo-Pacific, and Southern Oceans, represent a range of clean to polluted conditions in various climate regimes. With the extensive range of environmental conditions sampled, this data collection is ideal for testing satellite remote detection methods of CDNC and CCN in marine environments. Remote measurement methods are vital to expanding the available data in these difficult-to-reach regions of the Earth and improving our understanding of aerosol-cloud interactions. The data collection includes particle composition and continental tracers to identify potential contributing CCN sources. Several of these campaigns include High Spectral Resolution Lidar (HSRL) and polarimetric imaging measurements and retrievals that will be the basis for the next generation of space-based remote sensors and, thus, can be utilized as satellite surrogates.
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- 2023
28. Interferometric imaging using shared quantum entanglement
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Brown, Matthew R., Allgaier, Markus, Thiel, Valérian, Monnier, John D., Raymer, Michael G., and Smith, Brian J.
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Quantum Physics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Optics - Abstract
Quantum entanglement-based imaging promises significantly increased resolution by extending the spatial separation of optical collection apertures used in very-long-baseline interferometry for astronomy and geodesy. We report a table-top entanglement-based interferometric imaging technique that utilizes two entangled field modes serving as a phase reference between two apertures. The spatial distribution of a simulated thermal light source is determined by interfering light collected at each aperture with one of the entangled fields and performing joint measurements. This experiment demonstrates the ability of entanglement to implement interferometric imaging.
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- 2022
29. SimpleMind adds thinking to deep neural networks
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Choi, Youngwon, Wahi-Anwar, M. Wasil, and Brown, Matthew S.
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Computer Science - Artificial Intelligence - Abstract
Deep neural networks (DNNs) detect patterns in data and have shown versatility and strong performance in many computer vision applications. However, DNNs alone are susceptible to obvious mistakes that violate simple, common sense concepts and are limited in their ability to use explicit knowledge to guide their search and decision making. While overall DNN performance metrics may be good, these obvious errors, coupled with a lack of explainability, have prevented widespread adoption for crucial tasks such as medical image analysis. The purpose of this paper is to introduce SimpleMind, an open-source software framework for Cognitive AI focused on medical image understanding. It allows creation of a knowledge base that describes expected characteristics and relationships between image objects in an intuitive human-readable form. The SimpleMind framework brings thinking to DNNs by: (1) providing methods for reasoning with the knowledge base about image content, such as spatial inferencing and conditional reasoning to check DNN outputs; (2) applying process knowledge, in the form of general-purpose software agents, that are chained together to accomplish image preprocessing, DNN prediction, and result post-processing, and (3) performing automatic co-optimization of all knowledge base parameters to adapt agents to specific problems. SimpleMind enables reasoning on multiple detected objects to ensure consistency, providing cross checking between DNN outputs. This machine reasoning improves the reliability and trustworthiness of DNNs through an interpretable model and explainable decisions. Example applications are provided that demonstrate how SimpleMind supports and improves deep neural networks by embedding them within a Cognitive AI framework.
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- 2022
30. Translating AI to Clinical Practice: Overcoming Data Shift with Explainability.
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Choi, Youngwon, Yu, Wenxi, Nagarajan, Mahesh, Teng, Pangyu, Enzmann, Dieter, Kim, Grace, Brown, Matthew, Goldin, Jonathan, and Raman, Steven
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Humans ,Artificial Intelligence ,Algorithms - Abstract
To translate artificial intelligence (AI) algorithms into clinical practice requires generalizability of models to real-world data. One of the main obstacles to generalizability is data shift, a data distribution mismatch between model training and real environments. Explainable AI techniques offer tools to detect and mitigate the data shift problem and develop reliable AI for clinical practice. Most medical AI is trained with datasets gathered from limited environments, such as restricted disease populations and center-dependent acquisition conditions. The data shift that commonly exists in the limited training set often causes a significant performance decrease in the deployment environment. To develop a medical application, it is important to detect potential data shift and its impact on clinical translation. During AI training stages, from premodel analysis to in-model and post hoc explanations, explainability can play a key role in detecting model susceptibility to data shift, which is otherwise hidden because the test data have the same biased distribution as the training data. Performance-based model assessments cannot effectively distinguish the model overfitting to training data bias without enriched test sets from external environments. In the absence of such external data, explainability techniques can aid in translating AI to clinical practice as a tool to detect and mitigate potential failures due to data shift. ©RSNA, 2023 Quiz questions for this article are available in the supplemental material.
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- 2023
31. The JWST Early Release Observations
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Pontoppidan, Klaus, Barrientes, Jaclyn, Blome, Claire, Braun, Hannah, Brown, Matthew, Carruthers, Margaret, Coe, Dan, DePasquale, Joseph, Espinoza, Nestor, Marin, Macarena Garcia, Gordon, Karl D., Henry, Alaina, Hustak, Leah, James, Andi, Koekemoer, Anton M., LaMassa, Stephanie, Law, David, Lockwood, Alexandra, Moro-Martin, Amaya, Mullally, Susan E., Pagan, Alyssa, Player, Dani, Proffitt, Charles, Pulliam, Christine, Ramsay, Leah, Ravindranath, Swara, Reid, Neill, Robberto, Massimo, Sabbi, Elena, Ubeda, Leonardo, Balogh, Michael, Flanagan, Kathryn, Gardner, Jonathan, Hasan, Hashima, Meinke, Bonnie, and Nota, Antonella
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
The James Webb Space Telescope (JWST) Early Release Observations (EROs) is a set of public outreach products created to mark the end of commissioning and the beginning of science operations for JWST. Colloquially known as the "Webb First Images and Spectra", these products were intended to demonstrate to the worldwide public that JWST is ready for science, and is capable of producing spectacular results. The package was released on July 12, 2022, and included images and spectra of the galaxy cluster SMACS~J0723.3-7327 and distant lensed galaxies, the interacting galaxy group Stephan's Quintet, NGC 3324 in the Carina star-forming complex, the Southern Ring planetary nebula NGC 3132, and the transiting hot Jupiter WASP 96b. This paper describes the ERO technical design, observations, and scientific processing of data underlying the colorful outreach products., Comment: 15 pages, accepted by ApJ Letters
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- 2022
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32. The Science Performance of JWST as Characterized in Commissioning
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Rigby, Jane, Perrin, Marshall, McElwain, Michael, Kimble, Randy, Friedman, Scott, Lallo, Matt, Doyon, René, Feinberg, Lee, Ferruit, Pierre, Glasse, Alistair, Rieke, Marcia, Rieke, George, Wright, Gillian, Willott, Chris, Colon, Knicole, Milam, Stefanie, Neff, Susan, Stark, Christopher, Valenti, Jeff, Abell, Jim, Abney, Faith, Abul-Huda, Yasin, Acton, D. Scott, Adams, Evan, Adler, David, Aguilar, Jonathan, Ahmed, Nasif, Albert, Loïc, Alberts, Stacey, Aldridge, David, Allen, Marsha, Altenburg, Martin, Marquez, Javier Alvarez, de Oliveira, Catarina Alves, Andersen, Greg, Anderson, Harry, Anderson, Sara, Argyriou, Ioannis, Armstrong, Amber, Arribas, Santiago, Artigau, Etienne, Arvai, Amanda, Atkinson, Charles, Bacon, Gregory, Bair, Thomas, Banks, Kimberly, Barrientes, Jaclyn, Barringer, Bruce, Bartosik, Peter, Bast, William, Baudoz, Pierre, Beatty, Thomas, Bechtold, Katie, Beck, Tracy, Bergeron, Eddie, Bergkoetter, Matthew, Bhatawdekar, Rachana, Birkmann, Stephan, Blazek, Ronald, Blome, Claire, Boccaletti, Anthony, Boeker, Torsten, Boia, John, Bonaventura, Nina, Bond, Nicholas, Bosley, Kari, Boucarut, Ray, Bourque, Matthew, Bouwman, Jeroen, Bower, Gary, Bowers, Charles, Boyer, Martha, Bradley, Larry, Brady, Greg, Braun, Hannah, Breda, David, Bresnahan, Pamela, Bright, Stacey, Britt, Christopher, Bromenschenkel, Asa, Brooks, Brian, Brooks, Keira, Brown, Bob, Brown, Matthew, Brown, Patricia, Bunker, Andy, Burger, Matthew, Bushouse, Howard, Cale, Steven, Cameron, Alex, Cameron, Peter, Canipe, Alicia, Caplinger, James, Caputo, Francis, Cara, Mihai, Carey, Larkin, Carniani, Stefano, Carrasquilla, Maria, Carruthers, Margaret, Case, Michael, Catherine, Riggs, Chance, Don, Chapman, George, Charlot, Stéphane, Charlow, Brian, Chayer, Pierre, Chen, Bin, Cherinka, Brian, Chichester, Sarah, Chilton, Zack, Chonis, Taylor, Clampin, Mark, Clark, Charles, Clark, Kerry, Coe, Dan, Coleman, Benee, Comber, Brian, Comeau, Tom, Connolly, Dennis, Cooper, James, Cooper, Rachel, Coppock, Eric, Correnti, Matteo, Cossou, Christophe, Coulais, Alain, Coyle, Laura, Cracraft, Misty, Curti, Mirko, Cuturic, Steven, Davis, Katherine, Davis, Michael, Dean, Bruce, DeLisa, Amy, deMeester, Wim, Dencheva, Nadia, Dencheva, Nadezhda, DePasquale, Joseph, Deschenes, Jeremy, Detre, Örs Hunor, Diaz, Rosa, Dicken, Dan, DiFelice, Audrey, Dillman, Matthew, Dixon, William, Doggett, Jesse, Donaldson, Tom, Douglas, Rob, DuPrie, Kimberly, Dupuis, Jean, Durning, John, Easmin, Nilufar, Eck, Weston, Edeani, Chinwe, Egami, Eiichi, Ehrenwinkler, Ralf, Eisenhamer, Jonathan, Eisenhower, Michael, Elie, Michelle, Elliott, James, Elliott, Kyle, Ellis, Tracy, Engesser, Michael, Espinoza, Nestor, Etienne, Odessa, Etxaluze, Mireya, Falini, Patrick, Feeney, Matthew, Ferry, Malcolm, Filippazzo, Joseph, Fincham, Brian, Fix, Mees, Flagey, Nicolas, Florian, Michael, Flynn, Jim, Fontanella, Erin, Ford, Terrance, Forshay, Peter, Fox, Ori, Franz, David, Fu, Henry, Fullerton, Alexander, Galkin, Sergey, Galyer, Anthony, Marin, Macarena Garcia, Gardner, Jonathan, Gardner, Lisa, Garland, Dennis, Garrett, Bruce, Gasman, Danny, Gaspar, Andras, Gaudreau, Daniel, Gauthier, Peter, Geers, Vincent, Geithner, Paul, Gennaro, Mario, Giardino, Giovanna, Girard, Julien, Giuliano, Mark, Glassmire, Kirk, Glauser, Adrian, Glazer, Stuart, Godfrey, John, Golimowski, David, Gollnitz, David, Gong, Fan, Gonzaga, Shireen, Gordon, Michael, Gordon, Karl, Goudfrooij, Paul, Greene, Thomas, Greenhouse, Matthew, Grimaldi, Stefano, Groebner, Andrew, Grundy, Timothy, Guillard, Pierre, Gutman, Irvin, Ha, Kong Q., Haderlein, Peter, Hagedorn, Andria, Hainline, Kevin, Haley, Craig, Hami, Maryam, Hamilton, Forrest, Hammel, Heidi, Hansen, Carl, Harkins, Tom, Harr, Michael, Hart, Jessica, Hart, Quyen, Hartig, George, Hashimoto, Ryan, Haskins, Sujee, Hathaway, William, Havey, Keith, Hayden, Brian, Hecht, Karen, Heller-Boyer, Chris, Henriques, Caroline, Henry, Alaina, Hermann, Karl, Hernandez, Scarlin, Hesman, Brigette, Hicks, Brian, Hilbert, Bryan, Hines, Dean, Hoffman, Melissa, Holfeltz, Sherie, Holler, Bryan J., Hoppa, Jennifer, Hott, Kyle, Howard, Joseph, Howard, Rick, Hunter, Alexander, Hunter, David, Hurst, Brendan, Husemann, Bernd, Hustak, Leah, Ignat, Luminita Ilinca, Illingworth, Garth, Irish, Sandra, Jackson, Wallace, Jahromi, Amir, Jakobsen, Peter, James, LeAndrea, James, Bryan, Januszewski, William, Jenkins, Ann, Jirdeh, Hussein, Johnson, Phillip, Johnson, Timothy, Jones, Vicki, Jones, Ron, Jones, Danny, Jones, Olivia, Jordan, Ian, Jordan, Margaret, Jurczyk, Sarah, Jurling, Alden, Kaleida, Catherine, Kalmanson, Phillip, Kammerer, Jens, Kang, Huijo, Kao, Shaw-Hong, Karakla, Diane, Kavanagh, Patrick, Kelly, Doug, Kendrew, Sarah, Kennedy, Herbert, Kenny, Deborah, Keski-kuha, Ritva, Keyes, Charles, Kidwell, Richard, Kinzel, Wayne, Kirk, Jeff, Kirkpatrick, Mark, Kirshenblat, Danielle, Klaassen, Pamela, Knapp, Bryan, Knight, J. Scott, Knollenberg, Perry, Koehler, Robert, Koekemoer, Anton, Kovacs, Aiden, Kulp, Trey, Kumari, Nimisha, Kyprianou, Mark, La Massa, Stephanie, Labador, Aurora, Ortega, Alvaro Labiano, Lagage, Pierre-Olivier, Lajoie, Charles-Phillipe, Lallo, Matthew, Lam, May, Lamb, Tracy, Lambros, Scott, Lampenfield, Richard, Langston, James, Larson, Kirsten, Law, David, Lawrence, Jon, Lee, David, Leisenring, Jarron, Lepo, Kelly, Leveille, Michael, Levenson, Nancy, Levine, Marie, Levy, Zena, Lewis, Dan, Lewis, Hannah, Libralato, Mattia, Lightsey, Paul, Link, Miranda, Liu, Lily, Lo, Amy, Lockwood, Alexandra, Logue, Ryan, Long, Chris, Long, Douglas, Loomis, Charles, Lopez-Caniego, Marcos, Alvarez, Jose Lorenzo, Love-Pruitt, Jennifer, Lucy, Adrian, Luetzgendorf, Nora, Maghami, Peiman, Maiolino, Roberto, Major, Melissa, Malla, Sunita, Malumuth, Eliot, Manjavacas, Elena, Mannfolk, Crystal, Marrione, Amanda, Marston, Anthony, Martel, André, Maschmann, Marc, Masci, Gregory, Masciarelli, Michaela, Maszkiewicz, Michael, Mather, John, McKenzie, Kenny, McLean, Brian, McMaster, Matthew, Melbourne, Katie, Meléndez, Marcio, Menzel, Michael, Merz, Kaiya, Meyett, Michele, Meza, Luis, Miskey, Cherie, Misselt, Karl, Moller, Christopher, Morrison, Jane, Morse, Ernie, Moseley, Harvey, Mosier, Gary, Mountain, Matt, Mueckay, Julio, Mueller, Michael, Mullally, Susan, Murphy, Jess, Murray, Katherine, Murray, Claire, Mustelier, David, Muzerolle, James, Mycroft, Matthew, Myers, Richard, Myrick, Kaila, Nanavati, Shashvat, Nance, Elizabeth, Nayak, Omnarayani, Naylor, Bret, Nelan, Edmund, Nickson, Bryony, Nielson, Alethea, Nieto-Santisteban, Maria, Nikolov, Nikolay, Noriega-Crespo, Alberto, O'Shaughnessy, Brian, O'Sullivan, Brian, Ochs, William, Ogle, Patrick, Oleszczuk, Brenda, Olmsted, Joseph, Osborne, Shannon, Ottens, Richard, Owens, Beverly, Pacifici, Camilla, Pagan, Alyssa, Page, James, Park, Sang, Parrish, Keith, Patapis, Polychronis, Paul, Lee, Pauly, Tyler, Pavlovsky, Cheryl, Pedder, Andrew, Peek, Matthew, Pena-Guerrero, Maria, Pennanen, Konstantin, Perez, Yesenia, Perna, Michele, Perriello, Beth, Phillips, Kevin, Pietraszkiewicz, Martin, Pinaud, Jean-Paul, Pirzkal, Norbert, Pitman, Joseph, Piwowar, Aidan, Platais, Vera, Player, Danielle, Plesha, Rachel, Pollizi, Joe, Polster, Ethan, Pontoppidan, Klaus, Porterfield, Blair, Proffitt, Charles, Pueyo, Laurent, Pulliam, Christine, Quirt, Brian, Neira, Irma Quispe, Alarcon, Rafael Ramos, Ramsay, Leah, Rapp, Greg, Rapp, Robert, Rauscher, Bernard, Ravindranath, Swara, Rawle, Timothy, Regan, Michael, Reichard, Timothy A., Reis, Carl, Ressler, Michael E., Rest, Armin, Reynolds, Paul, Rhue, Timothy, Richon, Karen, Rickman, Emily, Ridgaway, Michael, Ritchie, Christine, Rix, Hans-Walter, Robberto, Massimo, Robinson, Gregory, Robinson, Michael, Robinson, Orion, Rock, Frank, Rodriguez, David, Del Pino, Bruno Rodriguez, Roellig, Thomas, Rohrbach, Scott, Roman, Anthony, Romelfanger, Fred, Rose, Perry, Roteliuk, Anthony, Roth, Marc, Rothwell, Braden, Rowlands, Neil, Roy, Arpita, Royer, Pierre, Royle, Patricia, Rui, Chunlei, Rumler, Peter, Runnels, Joel, Russ, Melissa, Rustamkulov, Zafar, Ryden, Grant, Ryer, Holly, Sabata, Modhumita, Sabatke, Derek, Sabbi, Elena, Samuelson, Bridget, Sapp, Benjamin, Sappington, Bradley, Sargent, B., Sauer, Arne, Scheithauer, Silvia, Schlawin, Everett, Schlitz, Joseph, Schmitz, Tyler, Schneider, Analyn, Schreiber, Jürgen, Schulze, Vonessa, Schwab, Ryan, Scott, John, Sembach, Kenneth, Shanahan, Clare, Shaughnessy, Bryan, Shaw, Richard, Shawger, Nanci, Shay, Christopher, Sheehan, Evan, Shen, Sharon, Sherman, Allan, Shiao, Bernard, Shih, Hsin-Yi, Shivaei, Irene, Sienkiewicz, Matthew, Sing, David, Sirianni, Marco, Sivaramakrishnan, Anand, Skipper, Joy, Sloan, Gregory, Slocum, Christine, Slowinski, Steven, Smith, Erin, Smith, Eric, Smith, Denise, Smith, Corbett, Snyder, Gregory, Soh, Warren, Sohn, Tony, Soto, Christian, Spencer, Richard, Stallcup, Scott, Stansberry, John, Starr, Carl, Starr, Elysia, Stewart, Alphonso, Stiavelli, Massimo, Straughn, Amber, Strickland, David, Stys, Jeff, Summers, Francis, Sun, Fengwu, Sunnquist, Ben, Swade, Daryl, Swam, Michael, Swaters, Robert, Swoish, Robby, Taylor, Joanna M., Taylor, Rolanda, Plate, Maurice Te, Tea, Mason, Teague, Kelly, Telfer, Randal, Temim, Tea, Thatte, Deepashri, Thompson, Christopher, Thompson, Linda, Thomson, Shaun, Tikkanen, Tuomo, Tippet, William, Todd, Connor, Toolan, Sharon, Tran, Hien, Trejo, Edwin, Truong, Justin, Tsukamoto, Chris, Tustain, Samuel, Tyra, Harrison, Ubeda, Leonardo, Underwood, Kelli, Uzzo, Michael, Van Campen, Julie, Vandal, Thomas, Vandenbussche, Bart, Vila, Begoña, Volk, Kevin, Wahlgren, Glenn, Waldman, Mark, Walker, Chanda, Wander, Michel, Warfield, Christine, Warner, Gerald, Wasiak, Matthew, Watkins, Mitchell, Weaver, Andrew, Weilert, Mark, Weiser, Nick, Weiss, Ben, Weissman, Sarah, Welty, Alan, West, Garrett, Wheate, Lauren, Wheatley, Elizabeth, Wheeler, Thomas, White, Rick, Whiteaker, Kevin, Whitehouse, Paul, Whiteleather, Jennifer, Whitman, William, Williams, Christina, Willmer, Christopher, Willoughby, Scott, Wilson, Andrew, Wirth, Gregory, Wislowski, Emily, Wolf, Erin, Wolfe, David, Wolff, Schuyler, Workman, Bill, Wright, Ray, Wu, Carl, Wu, Rai, Wymer, Kristen, Yates, Kayla, Yeager, Christopher, Yeates, Jared, Yerger, Ethan, Yoon, Jinmi, Young, Alice, Yu, Susan, Zak, Dean, Zeidler, Peter, Zhou, Julia, Zielinski, Thomas, Zincke, Cristian, and Zonak, Stephanie
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
This paper characterizes the actual science performance of the James Webb Space Telescope (JWST), as determined from the six month commissioning period. We summarize the performance of the spacecraft, telescope, science instruments, and ground system, with an emphasis on differences from pre-launch expectations. Commissioning has made clear that JWST is fully capable of achieving the discoveries for which it was built. Moreover, almost across the board, the science performance of JWST is better than expected; in most cases, JWST will go deeper faster than expected. The telescope and instrument suite have demonstrated the sensitivity, stability, image quality, and spectral range that are necessary to transform our understanding of the cosmos through observations spanning from near-earth asteroids to the most distant galaxies., Comment: 5th version as accepted to PASP; 31 pages, 18 figures; https://iopscience.iop.org/article/10.1088/1538-3873/acb293
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- 2022
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33. Publisher Correction: A genome-wide association analysis reveals new pathogenic pathways in gout
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Major, Tanya J., Takei, Riku, Matsuo, Hirotaka, Leask, Megan P., Sumpter, Nicholas A., Topless, Ruth K., Shirai, Yuya, Wang, Wei, Cadzow, Murray J., Phipps-Green, Amanda J., Li, Zhiqiang, Ji, Aichang, Merriman, Marilyn E., Morice, Emily, Kelley, Eric E., Wei, Wen-Hua, McCormick, Sally P. A., Bixley, Matthew J., Reynolds, Richard J., Saag, Kenneth G., Fadason, Tayaza, Golovina, Evgenia, O’Sullivan, Justin M., Stamp, Lisa K., Dalbeth, Nicola, Abhishek, Abhishek, Doherty, Michael, Roddy, Edward, Jacobsson, Lennart T. H., Kapetanovic, Meliha C., Melander, Olle, Andrés, Mariano, Pérez-Ruiz, Fernando, Torres, Rosa J., Radstake, Timothy, Jansen, Timothy L., Janssen, Matthijs, Joosten, Leo A. B., Liu, Ruiqi, Gaal, Orsolya I., Crişan, Tania O., Rednic, Simona, Kurreeman, Fina, Huizinga, Tom W. J., Toes, René, Lioté, Frédéric, Richette, Pascal, Bardin, Thomas, Ea, Hang Korng, Pascart, Tristan, McCarthy, Geraldine M., Helbert, Laura, Stibůrková, Blanka, Tausche, Anne-K., Uhlig, Till, Vitart, Véronique, Boutin, Thibaud S., Hayward, Caroline, Riches, Philip L., Ralston, Stuart H., Campbell, Archie, MacDonald, Thomas M., Nakayama, Akiyoshi, Takada, Tappei, Nakatochi, Masahiro, Shimizu, Seiko, Kawamura, Yusuke, Toyoda, Yu, Nakaoka, Hirofumi, Yamamoto, Ken, Matsuo, Keitaro, Shinomiya, Nariyoshi, Ichida, Kimiyoshi, Lee, Chaeyoung, Bradbury, Linda A., Brown, Matthew A., Robinson, Philip C., Buchanan, Russell R. C., Hill, Catherine L., Lester, Susan, Smith, Malcolm D., Rischmueller, Maureen, Choi, Hyon K., Stahl, Eli A., Miner, Jeff N., Solomon, Daniel H., Cui, Jing, Giacomini, Kathleen M., Brackman, Deanna J., Jorgenson, Eric M., Liu, Hongbo, Susztak, Katalin, Shringarpure, Suyash, So, Alexander, Okada, Yukinori, Li, Changgui, Shi, Yongyong, and Merriman, Tony R.
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- 2024
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34. Multi‐scale, domain knowledge‐guided attention + random forest: a two‐stage deep learning‐based multi‐scale guided attention models to diagnose idiopathic pulmonary fibrosis from computed tomography images
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Yu, Wenxi, Zhou, Hua, Choi, Youngwon, Goldin, Jonathan G, Teng, Pangyu, Wong, Weng Kee, McNitt‐Gray, Michael F, Brown, Matthew S, and Kim, Grace Hyun J
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Medical and Biological Physics ,Engineering ,Physical Sciences ,Biomedical Engineering ,Biomedical Imaging ,Machine Learning and Artificial Intelligence ,Networking and Information Technology R&D (NITRD) ,Bioengineering ,Rare Diseases ,Lung ,Autoimmune Disease ,4.1 Discovery and preclinical testing of markers and technologies ,4.2 Evaluation of markers and technologies ,Humans ,Aged ,Random Forest ,Deep Learning ,Idiopathic Pulmonary Fibrosis ,Lung Diseases ,Interstitial ,Tomography ,X-Ray Computed ,Retrospective Studies ,attention models ,computed tomography ,deep learning ,domain knowledge ,idiopathic pulmonary fibrosis ,machine learning ,medical imaging ,Other Physical Sciences ,Oncology and Carcinogenesis ,Nuclear Medicine & Medical Imaging ,Biomedical engineering ,Medical and biological physics - Abstract
BackgroundIdiopathic pulmonary fibrosis (IPF) is a progressive, irreversible, and usually fatal lung disease of unknown reasons, generally affecting the elderly population. Early diagnosis of IPF is crucial for triaging patients' treatment planning into anti-fibrotic treatment or treatments for other causes of pulmonary fibrosis. However, current IPF diagnosis workflow is complicated and time-consuming, which involves collaborative efforts from radiologists, pathologists, and clinicians and it is largely subject to inter-observer variability.PurposeThe purpose of this work is to develop a deep learning-based automated system that can diagnose subjects with IPF among subjects with interstitial lung disease (ILD) using an axial chest computed tomography (CT) scan. This work can potentially enable timely diagnosis decisions and reduce inter-observer variability.MethodsOur dataset contains CT scans from 349 IPF patients and 529 non-IPF ILD patients. We used 80% of the dataset for training and validation purposes and 20% as the holdout test set. We proposed a two-stage model: at stage one, we built a multi-scale, domain knowledge-guided attention model (MSGA) that encouraged the model to focus on specific areas of interest to enhance model explainability, including both high- and medium-resolution attentions; at stage two, we collected the output from MSGA and constructed a random forest (RF) classifier for patient-level diagnosis, to further boost model accuracy. RF classifier is utilized as a final decision stage since it is interpretable, computationally fast, and can handle correlated variables. Model utility was examined by (1) accuracy, represented by the area under the receiver operating characteristic curve (AUC) with standard deviation (SD), and (2) explainability, illustrated by the visual examination of the estimated attention maps which showed the important areas for model diagnostics.ResultsDuring the training and validation stage, we observe that when we provide no guidance from domain knowledge, the IPF diagnosis model reaches acceptable performance (AUC±SD = 0.93±0.07), but lacks explainability; when including only guided high- or medium-resolution attention, the learned attention maps are not satisfactory; when including both high- and medium-resolution attention, under certain hyperparameter settings, the model reaches the highest AUC among all experiments (AUC±SD = 0.99±0.01) and the estimated attention maps concentrate on the regions of interests for this task. Three best-performing hyperparameter selections according to MSGA were applied to the holdout test set and reached comparable model performance to that of the validation set.ConclusionsOur results suggest that, for a task with only scan-level labels available, MSGA+RF can utilize the population-level domain knowledge to guide the training of the network, which increases both model accuracy and explainability.
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- 2023
35. Pretreatment visceral metastases in castration resistant metastatic prostate cancer: role in prediction versus actual site of disease progression
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Ruchalski, Kathleen, Kim, Hyun J, Douek, Michael, Raman, Steven, Patel, Maitraya, Sai, Victor, Gutierrez, Antonio, Levine, Benjamin, Fischer, Cheryce, Allen-Auerbach, Martin, Gupta, Pawan, Coy, Heidi, Villegas, Bianca, Brown, Matthew, and Goldin, Jonathan
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Prostate Cancer ,Urologic Diseases ,Clinical Research ,Cancer ,Castration ,Disease Progression ,Humans ,Male ,Prostatic Neoplasms ,Castration-Resistant ,Retrospective Studies ,Tomography ,X-Ray Computed ,Treatment Outcome ,RECIST ,Disease progression ,Prostate cancer ,Visceral metastases ,Nuclear Medicine & Medical Imaging ,Clinical sciences ,Oncology and carcinogenesis - Abstract
BackgroundTo evaluate the anatomic site(s) of initial disease progression in patients with castration resistant metastatic prostate cancer (mCRPC) in the presence or absence of pre-treatment visceral metastases while on systemic therapy.MethodsThis is a retrospective cohort study of mCRPC patients who have baseline and at least one follow up bone scan and CT chest, abdomen and pelvis (CAP). Disease progression was determined by RECIST and/or ≥ 30% increase in automated bone scan lesion area score. Kaplan-Meier plot was used to estimate the median progression free survival and log-rank tests were used to compare anatomic sites.ResultsOf 203 patients, 61 (30%) had pre-treatment visceral metastases. Patients with baseline visceral disease were 1.5 times more likely to develop disease progression (HR = 1.53; 95% CI, 1.03-2.26). Disease progression was a result of worsening bone scan disease (42% (16/38)) versus visceral (32% (12/38)) or lymph node disease (3% (1/38)) by CT or a combination thereof (23% (9/38)). Median time to progression (TTP) did not differ by anatomic location of initial progression (p = 0.86). Development of new lesions occurred in 50% of those visceral patients with soft tissue only progression and was associated with a significantly longer TTP (3.1 months (2.8-4.3 months) than those with worsening of pre-existing lesions (1.8 months (1.6-2.7 months); p = 0.04.ConclusionsPatients with pre-treatment visceral metastases in mCRPC are more likely to experience disease progression of bone disease with the initial anatomic site of progression similar to those without baseline visceral involvement.
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- 2022
36. The Forgotten Margins of AI Ethics
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Birhane, Abeba, Ruane, Elayne, Laurent, Thomas, Brown, Matthew S., Flowers, Johnathan, Ventresque, Anthony, and Dancy, Christopher L.
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Computer Science - Computers and Society - Abstract
How has recent AI Ethics literature addressed topics such as fairness and justice in the context of continued social and structural power asymmetries? We trace both the historical roots and current landmark work that have been shaping the field and categorize these works under three broad umbrellas: (i) those grounded in Western canonical philosophy, (ii) mathematical and statistical methods, and (iii) those emerging from critical data/algorithm/information studies. We also survey the field and explore emerging trends by examining the rapidly growing body of literature that falls under the broad umbrella of AI Ethics. To that end, we read and annotated peer-reviewed papers published over the past four years in two premier conferences: FAccT and AIES. We organize the literature based on an annotation scheme we developed according to three main dimensions: whether the paper deals with concrete applications, use-cases, and/or people's lived experience; to what extent it addresses harmed, threatened, or otherwise marginalized groups; and if so, whether it explicitly names such groups. We note that although the goals of the majority of FAccT and AIES papers were often commendable, their consideration of the negative impacts of AI on traditionally marginalized groups remained shallow. Taken together, our conceptual analysis and the data from annotated papers indicate that the field would benefit from an increased focus on ethical analysis grounded in concrete use-cases, people's experiences, and applications as well as from approaches that are sensitive to structural and historical power asymmetries., Comment: To appear in the FAccT 2022 proceedings
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- 2022
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37. Prehabilitative versus rehabilitative exercise in prostate cancer patients undergoing prostatectomy
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Singh, Favil, Newton, Robert U., Taaffe, Dennis R., Lopez, Pedro, Thavaseelan, Jeff, Brown, Matthew, Ooi, Elayne, Nosaka, Kazunori, Hayne, Dickon, and Galvão, Daniel A.
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- 2023
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38. Interfragmentary strain measurement post-fixation to guide intraoperative decision making: a narrative review
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Rechenmacher, Albert J., Helmkamp, Joshua, Brown, Matthew, Paul, Alexandra V., Campbell, Sean T., Pean, Christian A., and DeBaun, Malcolm R.
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- 2023
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39. ADAPT: An Open-Source sUAS Payload for Real-Time Disaster Prediction and Response with AI
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Davila, Daniel, VanPelt, Joseph, Lynch, Alexander, Romlein, Adam, Webley, Peter, and Brown, Matthew S.
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Small unmanned aircraft systems (sUAS) are becoming prominent components of many humanitarian assistance and disaster response (HADR) operations. Pairing sUAS with onboard artificial intelligence (AI) substantially extends their utility in covering larger areas with fewer support personnel. A variety of missions, such as search and rescue, assessing structural damage, and monitoring forest fires, floods, and chemical spills, can be supported simply by deploying the appropriate AI models. However, adoption by resource-constrained groups, such as local municipalities, regulatory agencies, and researchers, has been hampered by the lack of a cost-effective, readily-accessible baseline platform that can be adapted to their unique missions. To fill this gap, we have developed the free and open-source ADAPT multi-mission payload for deploying real-time AI and computer vision onboard a sUAS during local and beyond-line-of-site missions. We have emphasized a modular design with low-cost, readily-available components, open-source software, and thorough documentation (https://kitware.github.io/adapt/). The system integrates an inertial navigation system, high-resolution color camera, computer, and wireless downlink to process imagery and broadcast georegistered analytics back to a ground station. Our goal is to make it easy for the HADR community to build their own copies of the ADAPT payload and leverage the thousands of hours of engineering we have devoted to developing and testing. In this paper, we detail the development and testing of the ADAPT payload. We demonstrate the example mission of real-time, in-flight ice segmentation to monitor river ice state and provide timely predictions of catastrophic flooding events. We deploy a novel active learning workflow to annotate river ice imagery, train a real-time deep neural network for ice segmentation, and demonstrate operation in the field., Comment: To be published in Workshop on Practical Deep Learning in the Wild at AAAI Conference on Artificial Intelligence 2022, 9 pages, 5 figures
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- 2022
40. Towards a Unified Foundation Model: Jointly Pre-Training Transformers on Unpaired Images and Text
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Li, Qing, Gong, Boqing, Cui, Yin, Kondratyuk, Dan, Du, Xianzhi, Yang, Ming-Hsuan, and Brown, Matthew
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
In this paper, we explore the possibility of building a unified foundation model that can be adapted to both vision-only and text-only tasks. Starting from BERT and ViT, we design a unified transformer consisting of modality-specific tokenizers, a shared transformer encoder, and task-specific output heads. To efficiently pre-train the proposed model jointly on unpaired images and text, we propose two novel techniques: (i) We employ the separately-trained BERT and ViT models as teachers and apply knowledge distillation to provide additional, accurate supervision signals for the joint training; (ii) We propose a novel gradient masking strategy to balance the parameter updates from the image and text pre-training losses. We evaluate the jointly pre-trained transformer by fine-tuning it on image classification tasks and natural language understanding tasks, respectively. The experiments show that the resultant unified foundation transformer works surprisingly well on both the vision-only and text-only tasks, and the proposed knowledge distillation and gradient masking strategy can effectively lift the performance to approach the level of separately-trained models., Comment: preliminary work
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- 2021
41. Exploring Temporal Granularity in Self-Supervised Video Representation Learning
- Author
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Qian, Rui, Li, Yeqing, Yuan, Liangzhe, Gong, Boqing, Liu, Ting, Brown, Matthew, Belongie, Serge, Yang, Ming-Hsuan, Adam, Hartwig, and Cui, Yin
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
This work presents a self-supervised learning framework named TeG to explore Temporal Granularity in learning video representations. In TeG, we sample a long clip from a video and a short clip that lies inside the long clip. We then extract their dense temporal embeddings. The training objective consists of two parts: a fine-grained temporal learning objective to maximize the similarity between corresponding temporal embeddings in the short clip and the long clip, and a persistent temporal learning objective to pull together global embeddings of the two clips. Our study reveals the impact of temporal granularity with three major findings. 1) Different video tasks may require features of different temporal granularities. 2) Intriguingly, some tasks that are widely considered to require temporal awareness can actually be well addressed by temporally persistent features. 3) The flexibility of TeG gives rise to state-of-the-art results on 8 video benchmarks, outperforming supervised pre-training in most cases.
- Published
- 2021
42. Hypothetical generalized framework for a new imaging endpoint of therapeutic activity in early phase clinical trials in brain tumors
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Ellingson, Benjamin M, Gerstner, Elizabeth R, Lassman, Andrew B, Chung, Caroline, Colman, Howard, Cole, Patricia E, Leung, David, Allen, Joshua E, Ahluwalia, Manmeet S, Boxerman, Jerrold, Brown, Matthew, Goldin, Jonathan, Nduom, Edjah, Hassan, Islam, Gilbert, Mark R, Mellinghoff, Ingo K, Weller, Michael, Chang, Susan, Arons, David, Meehan, Clair, Selig, Wendy, Tanner, Kirk, Yung, WK Alfred, van den Bent, Martin, Wen, Patrick Y, and Cloughesy, Timothy F
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Cancer ,Clinical Research ,Orphan Drug ,Brain Cancer ,Neurosciences ,Brain Disorders ,Rare Diseases ,Biomedical Imaging ,Neurological ,Brain Neoplasms ,Clinical Trials as Topic ,Diagnostic Imaging ,Humans ,Treatment Outcome ,response assessment ,brain tumors ,clinical trials ,growth rates ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
Imaging response assessment is a cornerstone of patient care and drug development in oncology. Clinicians/clinical researchers rely on tumor imaging to estimate the impact of new treatments and guide decision making for patients and candidate therapies. This is important in brain cancer, where associations between tumor size/growth and emerging neurological deficits are strong. Accurately measuring the impact of a new therapy on tumor growth early in clinical development, where patient numbers are small, would be valuable for decision making regarding late-stage development activation. Current attempts to measure the impact of a new therapy have limited influence on clinical development, as determination of progression, stability or response does not currently account for individual tumor growth kinetics prior to the initiation of experimental therapies. Therefore, we posit that imaging-based response assessment, often used as a tool for estimating clinical effect, is incomplete as it does not adequately account for growth trajectories or biological characteristics of tumors prior to the introduction of an investigational agent. Here, we propose modifications to the existing framework for evaluating imaging assessment in primary brain tumors that will provide a more reliable understanding of treatment effects. Measuring tumor growth trajectories prior to a given intervention may allow us to more confidently conclude whether there is an anti-tumor effect. This updated approach to imaging-based tumor response assessment is intended to improve our ability to select candidate therapies for later-stage development, including those that may not meet currently sought thresholds for "response" and ultimately lead to identification of effective treatments.
- Published
- 2022
43. Current Experiences and Factors of Future Enrollment in Computer Science for High School Students
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Lee, Hyejeong, Closser, Florentina, Alghamdi, Khadijah, Ottenbreit-Leftwich, Anne, Brown, Matthew, and Koressel, Jacob
- Abstract
This study aims to examine the current experiences of high school students in computer science (CS) courses and the factors that motivated them to continue their future enrollment. The participants were 603 high school students in grades 9 through 12 in Indiana, all of whom enrolled in at least one CS course during the 2020-2021 academic year. This research revealed that fun and meaningful CS pedagogy, knowledgeable CS teachers, and relevance to their lives and future careers enabled high school students to hold positive experiences in their CS classes. These experiences impacted students to take additional CS courses. In addition to these positive experiences, gender and early exposure to CS emerge as predictors to pursue CS courses. The findings will carry significance for policymakers and educators offering insights to enhance and broaden students' participation and engagement in the CS course.
- Published
- 2023
- Full Text
- View/download PDF
44. A cross-sample examination of lay rater perceptions of narcissistic grandiosity and vulnerability and their correlates
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Villalongo Andino, Mara, Brown, Matthew F. D., Sturgeon, Taylor, and Stanton, Kasey
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- 2023
- Full Text
- View/download PDF
45. 2.5D Visual Relationship Detection
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Su, Yu-Chuan, Changpinyo, Soravit, Chen, Xiangning, Thoppay, Sathish, Hsieh, Cho-Jui, Shapira, Lior, Soricut, Radu, Adam, Hartwig, Brown, Matthew, Yang, Ming-Hsuan, and Gong, Boqing
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Visual 2.5D perception involves understanding the semantics and geometry of a scene through reasoning about object relationships with respect to the viewer in an environment. However, existing works in visual recognition primarily focus on the semantics. To bridge this gap, we study 2.5D visual relationship detection (2.5VRD), in which the goal is to jointly detect objects and predict their relative depth and occlusion relationships. Unlike general VRD, 2.5VRD is egocentric, using the camera's viewpoint as a common reference for all 2.5D relationships. Unlike depth estimation, 2.5VRD is object-centric and not only focuses on depth. To enable progress on this task, we create a new dataset consisting of 220k human-annotated 2.5D relationships among 512K objects from 11K images. We analyze this dataset and conduct extensive experiments including benchmarking multiple state-of-the-art VRD models on this task. Our results show that existing models largely rely on semantic cues and simple heuristics to solve 2.5VRD, motivating further research on models for 2.5D perception. The new dataset is available at https://github.com/google-research-datasets/2.5vrd.
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- 2021
46. FiG-NeRF: Figure-Ground Neural Radiance Fields for 3D Object Category Modelling
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Xie, Christopher, Park, Keunhong, Martin-Brualla, Ricardo, and Brown, Matthew
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Computer Science - Computer Vision and Pattern Recognition - Abstract
We investigate the use of Neural Radiance Fields (NeRF) to learn high quality 3D object category models from collections of input images. In contrast to previous work, we are able to do this whilst simultaneously separating foreground objects from their varying backgrounds. We achieve this via a 2-component NeRF model, FiG-NeRF, that prefers explanation of the scene as a geometrically constant background and a deformable foreground that represents the object category. We show that this method can learn accurate 3D object category models using only photometric supervision and casually captured images of the objects. Additionally, our 2-part decomposition allows the model to perform accurate and crisp amodal segmentation. We quantitatively evaluate our method with view synthesis and image fidelity metrics, using synthetic, lab-captured, and in-the-wild data. Our results demonstrate convincing 3D object category modelling that exceed the performance of existing methods.
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- 2021
47. MoViNets: Mobile Video Networks for Efficient Video Recognition
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Kondratyuk, Dan, Yuan, Liangzhe, Li, Yandong, Zhang, Li, Tan, Mingxing, Brown, Matthew, and Gong, Boqing
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
We present Mobile Video Networks (MoViNets), a family of computation and memory efficient video networks that can operate on streaming video for online inference. 3D convolutional neural networks (CNNs) are accurate at video recognition but require large computation and memory budgets and do not support online inference, making them difficult to work on mobile devices. We propose a three-step approach to improve computational efficiency while substantially reducing the peak memory usage of 3D CNNs. First, we design a video network search space and employ neural architecture search to generate efficient and diverse 3D CNN architectures. Second, we introduce the Stream Buffer technique that decouples memory from video clip duration, allowing 3D CNNs to embed arbitrary-length streaming video sequences for both training and inference with a small constant memory footprint. Third, we propose a simple ensembling technique to improve accuracy further without sacrificing efficiency. These three progressive techniques allow MoViNets to achieve state-of-the-art accuracy and efficiency on the Kinetics, Moments in Time, and Charades video action recognition datasets. For instance, MoViNet-A5-Stream achieves the same accuracy as X3D-XL on Kinetics 600 while requiring 80% fewer FLOPs and 65% less memory. Code will be made available at https://github.com/tensorflow/models/tree/master/official/vision., Comment: Accepted to CVPR 2021
- Published
- 2021
48. Effect of indacaterol/glycopyrronium on ventilation and perfusion in COPD: a randomized trial.
- Author
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Singh, Dave, Wild, Jim, Saralaya, Dinesh, Lawson, Rod, Marshall, Helen, Goldin, Jonathan, Brown, Matthew, Kostikas, Konstantinos, Belmore, Kristin, Fogel, Robert, Patalano, Francesco, Drollmann, Anton, Machineni, Surendra, Jones, Ieuan, Yates, Denise, and Tillmann, Hanns-Christian
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Chronic obstructive pulmonary disease ,Hyperpolarized 3He gas magnetic resonance imaging ,Indacaterol/glycopyrronium ,V/Q index ,Ventilation volume and perfusion volume ,Ventilation/perfusion ratio ,Aged ,Bronchoconstriction ,Cross-Over Studies ,Double-Blind Method ,Drug Combinations ,Female ,Follow-Up Studies ,Forced Expiratory Volume ,Glycopyrrolate ,Humans ,Indans ,Lung ,Male ,Middle Aged ,Pulmonary Disease ,Chronic Obstructive ,Quinolones ,Respiratory Function Tests ,Retrospective Studies ,Treatment Outcome ,Vital Capacity - Abstract
RATIONALE: The long-acting β2-agonist/long-acting muscarinic antagonist combination indacaterol/glycopyrronium (IND/GLY) elicits bronchodilation, improves symptoms, and reduces exacerbations in COPD. Magnetic resonance imaging (MRI) of the lung with hyperpolarized gas and gadolinium contrast enhancement enables assessment of whole lung functional responses to IND/GLY. OBJECTIVES: The primary objective was assessment of effect of IND/GLY on global ventilated lung volume (%VV) versus placebo in COPD. Lung function, regional ventilation and perfusion in response to IND/GLY were also measured. METHODS: This double-blind, randomized, placebo-controlled, crossover study assessed %VV and pulmonary perfusion in patients with moderate-to-severe COPD after 8 days of once-daily IND/GLY treatment (110/50 µg) followed by 8 days of placebo, or vice versa, using inhaled hyperpolarized 3He gas and gadolinium contrast-enhanced MRI, respectively. Lung function measures including spirometry were performed for each treatment after 8 days. MEASUREMENTS AND MAIN RESULTS: Of 31 patients randomized, 29 completed both treatment periods. IND/GLY increased global %VV versus placebo (61.73% vs. 56.73%, respectively, least squares means treatment difference: 5.00% [90% CI 1.40 to 8.60]; P = 0.025). IND/GLY improved whole lung index of ventilation volume to perfusion volume (V/Q) ratio versus placebo; 94% (90% CI 83 to 105) versus 86% (90% CI 75 to 97; P = 0.047), respectively. IND/GLY showed a trend to improve diffusing capacity for carbon monoxide (DLCO) (+ 0.66 mL/min/mmHg; P = 0.082). By Day 8, forced expiratory volume in 1 s (FEV1) was increased by 0.32 L versus placebo (90% CI 0.26 to 0.38; P
- Published
- 2022
49. North Atlantic Ocean SST-gradient-driven variations in aerosol and cloud evolution along Lagrangian cold-air outbreak trajectories
- Author
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Sanchez, Kevin J, Zhang, Bo, Liu, Hongyu, Brown, Matthew D, Crosbie, Ewan C, Gallo, Francesca, Hair, Johnathan W, Hostetler, Chris A, Jordan, Carolyn E, Robinson, Claire E, Scarino, Amy Jo, Shingler, Taylor J, Shook, Michael A, Thornhill, Kenneth L, Wiggins, Elizabeth B, Winstead, Edward L, Ziemba, Luke D, Saliba, Georges, Lewis, Savannah L, Russell, Lynn M, Quinn, Patricia K, Bates, Timothy S, Porter, Jack, Bell, Thomas G, Gaube, Peter, Saltzman, Eric S, Behrenfeld, Michael J, and Moore, Richard H
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Earth Sciences ,Oceanography ,Atmospheric Sciences ,Climate Action ,Life Below Water ,Astronomical and Space Sciences ,Meteorology & Atmospheric Sciences ,Atmospheric sciences ,Climate change science - Abstract
Atmospheric marine particle concentrations impact cloud properties, which strongly impact the amount of solar radiation reflected back into space or absorbed by the ocean surface. While satellites can provide a snapshot of current conditions at the overpass time, models are necessary to simulate temporal variations in both particle and cloud properties. However, poor model accuracy limits the reliability with which these tools can be used to predict future climate. Here, we leverage the comprehensive ocean ecosystem and atmospheric aerosol–cloud dataset obtained during the third deployment of the North Atlantic Aerosols and Marine Ecosystems Study (NAAMES3). Airborne and ship-based measurements were collected in and around a cold-air outbreak during a 3 d (where d stands for day) intensive operations period from 17–19 September 2017. Cold-air outbreaks are of keen interest for model validation because they are challenging to accurately simulate, which is due, in part, to the numerous feedbacks and sub-grid-scale processes that influence aerosol and cloud evolution. The NAAMES observations are particularly valuable because the flight plans were tailored to lie along Lagrangian trajectories, making it possible to spatiotemporally connect upwind and downwind measurements with the state-of-the-art FLEXible PARTicle (FLEXPART) Lagrangian particle dispersion model and then calculate a rate of change in particle properties. Initial aerosol conditions spanning an east–west, closed-cell-to-clear-air transition region of the cold-air outbreak indicate similar particle concentrations and properties. However, despite the similarities in the aerosol fields, the cloud properties downwind of each region evolved quite differently. One trajectory carried particles through a cold-air outbreak, resulting in a decrease in accumulation mode particle concentration (−42 %) and cloud droplet concentrations, while the other remained outside of the cold-air outbreak and experienced an increase in accumulation mode particle concentrations (+62 %). The variable meteorological conditions between these two adjacent trajectories result from differences in the local sea surface temperature in the Labrador Current and surrounding waters, altering the stability of the marine atmospheric boundary layer. Further comparisons of historical satellite observations indicate that the observed pattern occurs annually in the region, making it an ideal location for future airborne Lagrangian studies tracking the evolution of aerosols and clouds over time under cold-air outbreak conditions.
- Published
- 2022
50. Engineering Ethics as an Expert-Guided and Socially-Situated Activity
- Author
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Grohman, Magdalena G., Gans, Nicholas, Lee, Eun Ah, Tacca, Marco, and Brown, Matthew J.
- Abstract
Engineering ethics education typically focuses on decisions by individual engineers and case studies of disasters. This does not reflect the everyday decisions that practicing engineers must make, and neglects the fact that most engineers work on teams rather than alone. The focus on safety and disaster prevention leaves little time for discussing pervasive social impacts of engineering and technology. Our research seeks to fill these gaps by determining how ethical decision making occurs in team settings, how it can be influenced by ethics-focused team members, and to what extent a social context influence consideration of social impacts. Over three years, we observed ethics discussions among teams of engineering students. First, we observed undergraduates during their Capstone Design project. We contrasted typical teams and teams with an additional team member trained and educated in engineering ethics. Second, we observed university research laboratory groups composed of undergraduate students, graduate students and postdocs in their spontaneous and regular conversations. Data analysis suggests that engineering students have a narrow understanding of engineering ethics, and that their explicit and implicit understanding can be in conflict. We also observed that an engineering expert can improve the breadth and depth of conversations. We also observe that engineering students rarely--if ever--discuss ethical or social implications of their work during routine activities. This also points to the benefits of facilitated discussions.
- Published
- 2020
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