1. Measuring the Global Substrate Specificity of Mycobacterial Serine Hydrolases Using a Library of Fluorogenic Ester Substrates
- Author
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R. Jeremy Johnson, Geoffrey C. Hoops, Adam Glanzer, Luke D. Lavis, Braden Bassett, Alex White, Brent Waibel, Charles Kim, Erik M. Larsen, Dominique Stephens, Heather Hansen, and Andrew Koelper
- Subjects
0301 basic medicine ,01 natural sciences ,Article ,Mycobacterium ,Substrate Specificity ,Mycobacterium tuberculosis ,Serine ,03 medical and health sciences ,Structure-Activity Relationship ,Structure–activity relationship ,Cluster Analysis ,Fluorescent Dyes ,biology ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Hydrolysis ,Serine Endopeptidases ,Lipid metabolism ,Serine hydrolase ,Esters ,biology.organism_classification ,0104 chemical sciences ,030104 developmental biology ,Infectious Diseases ,Biochemistry ,Biological significance ,Substrate specificity - Abstract
Among the proteins required for lipid metabolism in Mycobacterium tuberculosis are a significant number of uncharacterized serine hydrolases, especially lipases and esterases. Using a streamlined synthetic method, a library of immolative fluorogenic ester substrates was expanded to better represent the natural lipidomic diversity of Mycobacterium. This expanded fluorogenic library was then used to rapidly characterize the global structure activity relationship (SAR) of mycobacterial serine hydrolases in M. smegmatis under different growth conditions. Confirmation of fluorogenic substrate activation by mycobacterial serine hydrolases was performed using nonspecific serine hydrolase inhibitors and reinforced the biological significance of the SAR. The hydrolases responsible for the global SAR were then assigned using gel-resolved activity measurements, and these assignments were used to rapidly identify the relative substrate specificity of previously uncharacterized mycobacterial hydrolases. These measurements provide a global SAR of mycobacterial hydrolase activity, a picture of cycling hydrolase activity, and a detailed substrate specificity profile for previously uncharacterized hydrolases.
- Published
- 2018