7,141 results on '"Brearley A"'
Search Results
2. Is there a genetic relationship between chondrules and matrix?
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van Kooten, Elishevah, Brearley, Adrian, Ebel, Denton, Alexander, Conel, Gemma, Marina, and Hezel, Dominik
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Astrophysics - Earth and Planetary Astrophysics ,Physics - Geophysics - Abstract
Chondritic components such as chondrules and matrix are the key time capsules that can help us understand the evolution and dynamics of the protoplanetary disk from which the Solar System originated. Knowledge of where and how these components formed and to what extent they were transported in the gaseous disk provides major constraints to astrophysical models that investigate planet formation. Here, we explore whether chondrules and matrix are genetically related to each other and formed from single reservoirs per chondrite group or if every chondrite represents a unique proportion of components transported from a small number of formation reservoirs in the disk. These static versus dynamic disk interpretations of cosmochemical data have profound implications for the accretion history of the planets in the Solar System. To fully understand the relationship between chondrules and matrix and their potential complementarity, we dive into the petrological nature and origin of matrix, the chemical and isotopic compositions of chondrules and matrix and evaluate these data considering the effect of secondary alteration observed in chondrites and the potential complexity of chondrule formation. Even though we, the authors, have used different datasets and arrived at differing interpretations of chondrule-matrix relationships in the past, this review provides clarity on the existing data and has given us new directions towards future research that can resolve the complementarity debate., Comment: accepted in Space Science Reviews
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- 2024
3. The global distribution and drivers of wood density and their impact on forest carbon stocks.
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Mo, Lidong, Crowther, Thomas W, Maynard, Daniel S, van den Hoogen, Johan, Ma, Haozhi, Bialic-Murphy, Lalasia, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B, Phillips, Oliver L, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Amaral, Iêda, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Boonman, Coline CF, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brearley, Francis Q, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Gatti, Roberto Cazzolla, César, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Valverde, Fernando Cornejo, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Finér, Leena, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gamarra, Javier GP, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Herold, Martin, Hietz, Peter, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas, Imai, Nobuo, Jagodziński, Andrzej M, Jaroszewicz, Bogdan, and Johannsen, Vivian Kvist
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Ecology ,Evolutionary biology ,Environmental management - Abstract
The density of wood is a key indicator of the carbon investment strategies of trees, impacting productivity and carbon storage. Despite its importance, the global variation in wood density and its environmental controls remain poorly understood, preventing accurate predictions of global forest carbon stocks. Here we analyse information from 1.1 million forest inventory plots alongside wood density data from 10,703 tree species to create a spatially explicit understanding of the global wood density distribution and its drivers. Our findings reveal a pronounced latitudinal gradient, with wood in tropical forests being up to 30% denser than that in boreal forests. In both angiosperms and gymnosperms, hydrothermal conditions represented by annual mean temperature and soil moisture emerged as the primary factors influencing the variation in wood density globally. This indicates similar environmental filters and evolutionary adaptations among distinct plant groups, underscoring the essential role of abiotic factors in determining wood density in forest ecosystems. Additionally, our study highlights the prominent role of disturbance, such as human modification and fire risk, in influencing wood density at more local scales. Factoring in the spatial variation of wood density notably changes the estimates of forest carbon stocks, leading to differences of up to 21% within biomes. Therefore, our research contributes to a deeper understanding of terrestrial biomass distribution and how environmental changes and disturbances impact forest ecosystems.
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- 2024
4. Safety of bubble nasal intermittent positive pressure ventilation (NIPPV) versus bubble nasal continuous positive airway pressure (NCPAP) in preterm infants with respiratory distress
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John, Stephen C., Garg, Mehak, Muttineni, Mounika, Brearley, Ann M., Rao, Praveen, Bhandari, Vineet, Slusher, Tina, and Murki, Srinivas
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- 2024
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5. Ecology of Nepenthes on Mount Talang, West Sumatra, Indonesia
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Mansur, Muhammad, Salamah, Andi, Mirmanto, Edi, and Brearley, Francis Q.
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- 2024
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6. The Fate of Primary Iron Sulfides in the CM1 Carbonaceous Chondrites: Effects of Advanced Aqueous Alteration on Primary Components
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Singerling, Sheryl A., Corrigan, Catherine M., and Brearley, Adrian J.
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Astrophysics - Earth and Planetary Astrophysics ,Physics - Geophysics - Abstract
We have carried out a SEM-EPMA-TEM study to determine the textures and compositions of relict primary iron sulfides and their alteration products in a suite of moderately to heavily-altered CM1 carbonaceous chondrites. We observed four textural groups of altered primary iron sulfides: 1) pentlandite+phyllosilicate (2P) grains, characterized by pentlandite with submicron lenses of phyllosilicates, 2) pyrrhotite+pentlandite+magnetite (PPM) grains, characterized by pyrrhotite-pentlandite exsolution textures with magnetite veining and secondary pentlandite, 3) pentlandite+serpentine (PS) grains, characterized by relict pentlandite exsolution, serpentine, and secondary pentlandite, and 4) pyrrhotite+pentlandite+magnetite+serpentine (PPMS) grains, characterized by features of both the PPM and PS grains. We have determined that all four groups were initially primary iron sulfides, which formed from crystallization of immiscible sulfide melts within silicate chondrules in the solar nebula. The fact that such different alteration products could result from the same precursor sulfides within even the same meteorite sample further underscores the complexity of the aqueous alteration environment for the CM chondrites. The different alteration reactions for each textural group place constraints on the mechanisms and conditions of alteration with evidence for acidic environments, oxidizing environments, and changing fluid compositions (Ni-bearing and Si-Mg-bearing)., Comment: 53 pages, 10 figures, 2 tables, appendix containing 3 additional figures and 5 additional tables
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- 2024
7. Quantum Algorithm for Solving the Advection Equation using Hamiltonian Simulation
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Brearley, Peter and Laizet, Sylvain
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Quantum Physics - Abstract
A quantum algorithm for solving the advection equation by embedding the discrete time-marching operator into Hamiltonian simulations is presented. One-dimensional advection can be simulated directly since the central finite difference operator for first-order derivatives is anti-Hermitian. Here, this is extended to industrially relevant, multi-dimensional flows with realistic boundary conditions and arbitrary finite difference stencils. A single copy of the initial quantum state is required and the circuit depth grows linearly with the required number of time steps, the sparsity of the time-marching operator and the inverse of the allowable error. Statevector simulations of a scalar transported in a two-dimensional channel flow and lid-driven cavity configuration are presented as a proof of concept of the proposed approach.
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- 2023
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8. Low-Temperature Aqueous Alteration of Chondrites
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Lee, Martin R., Alexander, Conel M. O’D., Bischoff, Addi, Brearley, Adrian J., Dobrică, Elena, Fujiya, Wataru, Le Guillou, Corentin, King, Ashley J., van Kooten, Elishevah, Krot, Alexander N., Leitner, Jan, Marrocchi, Yves, Patzek, Markus, Petaev, Michail I., Piani, Laurette, Pravdivtseva, Olga, Remusat, Laurent, Telus, Myriam, Tsuchiyama, Akira, and Vacher, Lionel G.
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- 2025
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9. Metasomatic Alteration of Type 3 Ordinary and Carbonaceous Chondrites
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Krot, A. N., Petaev, M. I., Piani, L., Marrocchi, Y., Fujiya, W., Pravdivtseva, O. V., Dobrică, E., Vacher, L. G., King, A. J., Lee, M., Van Kooten, E., Jacobsen, B., Alexander, C. M. O’D., Bischoff, A., Brearley, A. J., Le Guillou, C., Remusat, L., Leitner, J., and Huss, G. R.
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- 2025
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10. Elucidation of Spartina dimethylsulfoniopropionate synthesis genes enables engineering of stress tolerant plants
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Payet, Rocky D., Bilham, Lorelei J., Kabir, Shah Md Tamim, Monaco, Serena, Norcott, Ash R., Allen, Mellieha G. E., Zhu, Xiao-Yu, Davy, Anthony J., Brearley, Charles A., Todd, Jonathan D., and Miller, J. Benjamin
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- 2024
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11. Substrate promiscuity of inositol 1,4,5-trisphosphate kinase driven by structurally-modified ligands and active site plasticity
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Márquez-Moñino, María Ángeles, Ortega-García, Raquel, Whitfield, Hayley, Riley, Andrew M., Infantes, Lourdes, Garrett, Shane W., Shipton, Megan L., Brearley, Charles A., Potter, Barry V. L., and González, Beatriz
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- 2024
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12. Integrated global assessment of the natural forest carbon potential
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Mo, Lidong, Zohner, Constantin M, Reich, Peter B, Liang, Jingjing, de Miguel, Sergio, Nabuurs, Gert-Jan, Renner, Susanne S, van den Hoogen, Johan, Araza, Arnan, Herold, Martin, Mirzagholi, Leila, Ma, Haozhi, Averill, Colin, Phillips, Oliver L, Gamarra, Javier GP, Hordijk, Iris, Routh, Devin, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Amaral, Iêda, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brearley, Francis Q, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Cazzolla Gatti, Roberto, César, Ricardo G, Cesljar, Goran, Chazdon, Robin L, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Cornejo Valverde, Fernando, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Finér, Leena, Fischer, Markus, Fletcher, Christine, Frizzera, Lorenzo, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas, Imai, Nobuo, and Jagodziński, Andrzej M
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Agricultural ,Veterinary and Food Sciences ,Ecological Applications ,Environmental Sciences ,Forestry Sciences ,Life on Land ,Biodiversity ,Carbon ,Carbon Sequestration ,Conservation of Natural Resources ,Forests ,Human Activities ,Environmental Restoration and Remediation ,Sustainable Development ,Global Warming ,Agricultural ,Ecosystem ,General Science & Technology ,Humans ,Veterinary and Food Sciences - Abstract
Forests are a substantial terrestrial carbon sink, but anthropogenic changes in land use and climate have considerably reduced the scale of this system1. Remote-sensing estimates to quantify carbon losses from global forests2-5 are characterized by considerable uncertainty and we lack a comprehensive ground-sourced evaluation to benchmark these estimates. Here we combine several ground-sourced6 and satellite-derived approaches2,7,8 to evaluate the scale of the global forest carbon potential outside agricultural and urban lands. Despite regional variation, the predictions demonstrated remarkable consistency at a global scale, with only a 12% difference between the ground-sourced and satellite-derived estimates. At present, global forest carbon storage is markedly under the natural potential, with a total deficit of 226 Gt (model range = 151-363 Gt) in areas with low human footprint. Most (61%, 139 Gt C) of this potential is in areas with existing forests, in which ecosystem protection can allow forests to recover to maturity. The remaining 39% (87 Gt C) of potential lies in regions in which forests have been removed or fragmented. Although forests cannot be a substitute for emissions reductions, our results support the idea2,3,9 that the conservation, restoration and sustainable management of diverse forests offer valuable contributions to meeting global climate and biodiversity targets.
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- 2023
13. Associations Between Physical Characteristics and Golf Clubhead Speed: A Systematic Review with Meta-Analysis
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Brennan, Alex, Murray, Andrew, Mountjoy, Margo, Hellstrom, John, Coughlan, Dan, Wells, Jack, Brearley, Simon, Ehlert, Alex, Jarvis, Paul, Turner, Anthony, and Bishop, Chris
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- 2024
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14. Is There a Genetic Relationship Between Chondrules and Matrix?
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van Kooten, Elishevah M. M. E., Brearley, Adrian, Ebel, Denton S., Alexander, Conel M. O. ’D., Gemma, Marina E., and Hezel, Dominik C.
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- 2024
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15. The global biogeography of tree leaf form and habit
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Ma, Haozhi, Crowther, Thomas W, Mo, Lidong, Maynard, Daniel S, Renner, Susanne S, van den Hoogen, Johan, Zou, Yibiao, Liang, Jingjing, de-Miguel, Sergio, Nabuurs, Gert-Jan, Reich, Peter B, Niinemets, Ülo, Abegg, Meinrad, Adou Yao, Yves C, Alberti, Giorgio, Almeyda Zambrano, Angelica M, Alvarado, Braulio Vilchez, Alvarez-Dávila, Esteban, Alvarez-Loayza, Patricia, Alves, Luciana F, Ammer, Christian, Antón-Fernández, Clara, Araujo-Murakami, Alejandro, Arroyo, Luzmila, Avitabile, Valerio, Aymard, Gerardo A, Baker, Timothy R, Bałazy, Radomir, Banki, Olaf, Barroso, Jorcely G, Bastian, Meredith L, Bastin, Jean-Francois, Birigazzi, Luca, Birnbaum, Philippe, Bitariho, Robert, Boeckx, Pascal, Bongers, Frans, Bouriaud, Olivier, Brancalion, Pedro HS, Brandl, Susanne, Brearley, Francis Q, Brienen, Roel, Broadbent, Eben N, Bruelheide, Helge, Bussotti, Filippo, Cazzolla Gatti, Roberto, César, Ricardo G, Cesljar, Goran, Chazdon, Robin, Chen, Han YH, Chisholm, Chelsea, Cho, Hyunkook, Cienciala, Emil, Clark, Connie, Clark, David, Colletta, Gabriel D, Coomes, David A, Valverde, Fernando Cornejo, Corral-Rivas, José J, Crim, Philip M, Cumming, Jonathan R, Dayanandan, Selvadurai, de Gasper, André L, Decuyper, Mathieu, Derroire, Géraldine, DeVries, Ben, Djordjevic, Ilija, Dolezal, Jiri, Dourdain, Aurélie, Engone Obiang, Nestor Laurier, Enquist, Brian J, Eyre, Teresa J, Fandohan, Adandé Belarmain, Fayle, Tom M, Feldpausch, Ted R, Ferreira, Leandro V, Finér, Leena, Fischer, Markus, Fletcher, Christine, Fridman, Jonas, Frizzera, Lorenzo, Gamarra, Javier GP, Gianelle, Damiano, Glick, Henry B, Harris, David J, Hector, Andrew, Hemp, Andreas, Hengeveld, Geerten, Hérault, Bruno, Herbohn, John L, Herold, Martin, Hillers, Annika, Honorio Coronado, Eurídice N, Hui, Cang, Ibanez, Thomas T, Amaral, Iêda, Imai, Nobuo, Jagodziński, Andrzej M, Jaroszewicz, Bogdan, and Johannsen, Vivian Kvist
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Biological Sciences ,Ecology ,Climate Action ,Plant Biology ,Crop and Pasture Production ,Plant biology - Abstract
Understanding what controls global leaf type variation in trees is crucial for comprehending their role in terrestrial ecosystems, including carbon, water and nutrient dynamics. Yet our understanding of the factors influencing forest leaf types remains incomplete, leaving us uncertain about the global proportions of needle-leaved, broadleaved, evergreen and deciduous trees. To address these gaps, we conducted a global, ground-sourced assessment of forest leaf-type variation by integrating forest inventory data with comprehensive leaf form (broadleaf vs needle-leaf) and habit (evergreen vs deciduous) records. We found that global variation in leaf habit is primarily driven by isothermality and soil characteristics, while leaf form is predominantly driven by temperature. Given these relationships, we estimate that 38% of global tree individuals are needle-leaved evergreen, 29% are broadleaved evergreen, 27% are broadleaved deciduous and 5% are needle-leaved deciduous. The aboveground biomass distribution among these tree types is approximately 21% (126.4 Gt), 54% (335.7 Gt), 22% (136.2 Gt) and 3% (18.7 Gt), respectively. We further project that, depending on future emissions pathways, 17-34% of forested areas will experience climate conditions by the end of the century that currently support a different forest type, highlighting the intensification of climatic stress on existing forests. By quantifying the distribution of tree leaf types and their corresponding biomass, and identifying regions where climate change will exert greatest pressure on current leaf types, our results can help improve predictions of future terrestrial ecosystem functioning and carbon cycling.
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- 2023
16. Advancing workforce development and scientific collaboration: A novel resource for biostatistical education
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Emily Slade, Claudine T. Jurkovitz, Shari Messinger, Robert A. Oster, Gina-Maria Pomann, Sandra L. Taylor, and Ann M. Brearley
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Biostatistics ,training ,education ,workforce development ,statistical literacy ,Medicine - Abstract
A clinical and translational scientist (CTS) often seeks to increase their knowledge of statistical topics to effectively conduct biomedical research studies. A common method for obtaining this knowledge is through existing online educational materials that are suggested by a biostatistical collaborator or identified by the CTS. However, the volume of available educational materials on diverse statistical topics makes the task of identifying high-quality educational resources at an appropriate level challenging and time consuming for CTSs and collaborative biostatisticians. In response to these challenges, the Biostats4You website was created, where existing online educational materials for a variety of statistical topics are vetted to identify those most appropriate for CTSs. In this manuscript, we describe the resource review process, provide information about statistical topics and resources currently available, and make recommendations for how CTSs and collaborative biostatisticians can utilize the Biostats4You website to improve training, mentoring, and collaborative research practices.
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- 2025
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17. Innovative Indigenous Technologies for Sustainable Mountain Farming Systems in North-East India
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Changkija, Sapu, Hombegowda, H. C., Manpoong, Chowlani, Ray, Sanjay Kumar, Brearley, Francis Q., Tripathi, Shri Kant, editor, and Brearley, Francis Q., editor
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- 2024
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18. Differences in Soil Carbon and Nitrogen Across Contrasting Land-Use Systems in a Sub-Tropical Hilly Region, North-East India
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Ovung, Etsoshan Y., Brearley, Francis Q., Singh, Ng. Somen, Tripathi, Shri Kant, Tripathi, Shri Kant, editor, and Brearley, Francis Q., editor
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- 2024
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19. Introduction to Shifting Cultivation Systems in North-East India: From Indigenous Practices to Soil Fertility
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Brearley, Francis Q., Tripathi, Shri Kant, Tripathi, Shri Kant, editor, and Brearley, Francis Q., editor
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- 2024
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20. Innovative Shifting Cultivation and Other Agricultural Practices Conducted by the Indigenous Population of Mizoram, North-East India
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Tripathi, Shri Kant, Hauchhum, Ramchhanliana, Ovung, Etsoshan Y., Singh, Ng. Somen, Vanlalfakawma, David C., Upadhyay, Keshav K., Brearley, Francis Q., Lalraminghlova, Hnialum, Tripathi, Shri Kant, editor, and Brearley, Francis Q., editor
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- 2024
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21. Management of Soil Fertility and Crop Productivity Under Shifting Agriculture in Mizoram, North-East India: Ways Forward
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Tripathi, Shri Kant, Brearley, Francis Q., Nath, Arun Jyoti, Tripathi, Shri Kant, editor, and Brearley, Francis Q., editor
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- 2024
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22. Changes in Bacterial Community Structure and Nitrogen Cycling Gene Abundance During the Fallow Recovery Phase of Shifting Cultivation in North-East India
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Brearley, Francis Q., Spencer, Max W., Tripathi, Binu M., Ovung, Etsoshan Y., Singh, Ng. Somen, McGuire, Krista L., Tripathi, Shri Kant, Tripathi, Shri Kant, editor, and Brearley, Francis Q., editor
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- 2024
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23. Single Cell Analysis of Human Colonoids Exposed to Uranium-Bearing Dust
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Atanga, Roger, Appell, Lidia L., Thompson, Myranda N., Lauer, Fredine T., Brearley, Adrian, Campen, Matthew J., Castillo, Eliseo F., and In, Julie G.
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Physiological aspects ,Methods ,Health aspects ,Environmental aspects ,Colon -- Physiological aspects ,Uranium -- Health aspects -- Physiological aspects ,RNA sequencing -- Methods ,Epithelial cells -- Physiological aspects -- Environmental aspects ,Mine dust -- Health aspects -- Physiological aspects ,Colon (Anatomy) -- Physiological aspects ,Mine dusts -- Health aspects -- Physiological aspects - Abstract
Introduction Uranium mining in the United States arose in the 1940s, peaked in the 1970s, and subsided in the late 1980s, with extensive activity concentrated in Navajo, Puebloan, and other [...], BACKGROUND: Uranium exposure remains an important environmental legacy and physiological health concern, with hundreds of abandoned uranium mines located in the Southwestern United States largely impacting underserved indigenous communities. The negative effects of heavy metals on barrier permeability and inhibition of intestinal epithelial healing have been described; however, transcriptomic changes within the intestinal epithelial cells and impacts on lineage differentiation are largely unknown. OBJECTIVES: Herein, we sought to determine the molecular and cellular changes that occur in the colon in response to uranium bearing dust (UBD) exposure. METHODS: Human colonoids from three biologically distinct donors were acutely exposed to UBD then digested for single cell RNA sequencing to define the molecular changes that occur to specific identities of colonic epithelial cells. Validation in colonoids was assessed using morphological and imaging techniques. RESULTS: Human colonoids acutely exposed to UBD exhibited disrupted proliferation and hyperplastic differentiation of the secretory lineage cell, enteroendocrine cells (EEC). Single-cell RNA sequencing also showed more EEC subtypes present in UBD-exposed colonoids. DISCUSSION: These findings highlight the significance of crypt-based proliferative cells and secretory cell differentiation using human colonoids to model major colonic responses to uranium-bearing particulate dust exposure. https://doi.org/10.1289/EHP13855
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- 2024
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24. Tracing the history of an unusual compound presolar grain from progenitor star to asteroid parent body host
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Singerling, Sheryl A., Nittler, Larry R., Barosch, Jens, Dobrica, Elena, Brearley, Adrian J., and Stroud, Rhonda M.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics ,Physics - Geophysics - Abstract
We conducted a TEM study of an unusual oxide-silicate composite presolar grain (F2-8) from the unequilibrated ordinary chondrite Semarkona. The presolar composite grain is relatively large, has an amoeboidal shape, and contains Mg-rich olivine, Mg-Al spinel, and Ca-rich pyroxene. The shape and phase assemblage are reminiscent of amoeboid-olivine-aggregates and add to the growing number of TEM observations of presolar refractory inclusion-like (CAIs and AOAs) grains. In addition to the dominant components, F2-8 also contains multiple subgrains, including an alabandite-oldhamite composite grain within the olivine and several magnetite subgrains within the Mg-Al spinel. We argue that the olivine, Mg-Al spinel, and alabandite-oldhamite formed by equilibrium condensation, whereas the Ca-rich pyroxene formed by non-equilibrium condensation, all in an M-type AGB star envelope. On the other hand, the magnetite subgrains are likely the result of aqueous alteration on the Semarkona asteroidal parent body. Additional evidence of secondary processing includes Fe-enrichment in the Mg-Al spinel and olivine, elevated Al contents in the olivine, and beam sensitivity and a modulated structure for the olivine. Compound presolar grains record condensation conditions over a wide range of temperatures. Additionally, the presence of several different presolar phases in a composite grain can impart information on the relative rates and effects of post-condensation processing in a range of environments, including the interstellar medium, solar nebula, and the host asteroid parent body. The TEM observations of F2-8 provide insights across the lifetime of the grain from its formation by condensation in an M-type AGB star envelope, its transit through the interstellar medium, and aqueous alteration during its residence on Semarkona's asteroidal parent body., Comment: 36 total pages, including 6 figures, 3 supplemental figures, 4 tables, and 2 supplemental tables
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- 2023
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25. Antenatal jaundice instruction and acute bilirubin encephalopathy in Nigeria
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Wennberg, Richard P., Imam, Zainab O., Shwe, David D., Hassan, Laila, Farouk, Zubaida L., Turner, Lindsey E., Brearley, Ann M., Slusher, Tina M., and Oguche, Stephen
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- 2024
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26. Presolar O- and C-anomalous grains in unequilibrated ordinary chondrite matrices
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Barosch, Jens, Nittler, Larry, Wang, Jianhua, Dobrică, Elena, Brearley, Adrian J., Hezel, Dominik C., and Alexander, Conel M. O'D.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics ,Physics - Geophysics - Abstract
Presolar grains are trace components in chondrite matrices. Their abundances and compositions have been systematically studied in carbonaceous chondrites but rarely in situ in other major chondrite classes. We have conducted a NanoSIMS isotopic search for presolar grains with O- and C-anomalous isotopic compositions in the matrices of the unequilibrated ordinary chondrites Semarkona, Meteorite Hills 00526, and Northwest Africa 8276. The matrices of even the most primitive ordinary chondrites have been aqueously altered and/or thermally metamorphosed, destroying their presolar grain populations to varying extents. In addition to randomly placed isotope maps, we targeted recently reported, relatively pristine Semarkona matrix areas to better explore the original inventory of presolar grains. In all samples, we found a total of 122 O-anomalous grains (silicates + oxides), 79 SiC grains, and 22 C-anomalous carbonaceous grains (organics, graphites). Average matrix-normalized abundances are 151 ppm O-anomalous grains, 53 ppm SiC grains and 56 ppm carbonaceous grains in Semarkona, 55 ppm (O-anom.), 22 ppm (SiC) and 3 ppm (carb.) in MET 00526 and 12 ppm (O-anom.), 15 ppm (SiC) and 1 ppm (carb.) in NWA 8276. In relatively pristine ordinary chondrites and in primitive carbonaceous and C-ungrouped chondrites, the O and C isotopic composition of presolar grains and their matrix-normalized abundances are similar, despite the likely differences in chondrite-formation time and nebular location. These results suggest a relatively homogenous distribution of presolar dust across major chondrite-forming reservoirs in the solar nebula. Secondary asteroidal processes are mainly responsible for differences in presolar grain abundances between and within chondrites, highlighting the need to identify and target the most pristine chondrite matrices for such studies., Comment: Published in Geochimica et Cosmochimica Acta. Main text: 36 pp with 7 figures and 1 table. Supplement: 13 pp, 2 tables, 2 figures
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- 2022
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27. Perceptions of change in the environment caused by the COVID-19 pandemic: Implications for environmental policy.
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Hidalgo-Triana, N, Picornell, A, Reyes, S, Circella, G, Ribeiro, H, Bates, A, Rojo, J, Pearman, P, Vivancos, J, Nautiyal, S, Brearley, F, Pereña, J, Ferragud, M, Monroy-Colín, A, Maya-Manzano, J, Ouachinou, J, Salvo-Tierra, A, Antunes, C, Trigo-Pérez, M, Navarro, T, Jaramillo, P, Oteros, J, Charalampopoulos, A, Kalantzi, O, Freitas, H, Ščevková, J, Zanolla, M, Marrano, A, Comino, O, Roldán, J, Alcántara, A, and Damialis, A
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Emerging environmental impacts ,Natural environment ,Pandemic ,Perception ,Social behaviours - Abstract
COVID-19 lockdown measures have impacted the environment with both positive and negative effects. However, how human populations have perceived such changes in the natural environment and how they may have changed their daily habits have not been yet thoroughly evaluated. The objectives of this work were to investigate (1) the social perception of the environmental changes produced by the COVID-19 pandemic lockdown and the derived change in habits in relation to i) waste management, energy saving, and sustainable consumption, ii) mobility, iii) social inequalities, iv) generation of noise, v) utilization of natural spaces, and, vi) human population perception towards the future, and (2) the associations of these potential new habits with various socio-demographic variables. First, a SWOT analysis identified strengths (S), weaknesses (W), opportunities (O), and threats (T) generated by the pandemic lockdown measures. Second, a survey based on the aspects of the SWOT was administered among 2370 adults from 37 countries during the period from February to September 2021. We found that the short-term positive impacts on the natural environment were generally well recognized. In contrast, longer-term negative effects arise, but they were often not reported by the survey participants, such as greater production of plastic waste derived from health safety measures, and the increase in e-commerce use, which can displace small storefront businesses. We were able to capture a mismatch between perceptions and the reported data related to visits to natural areas, and generation of waste. We found that age and country of residence were major contributors in shaping the survey participants ´answers, which highlights the importance of government management strategies to address current and future environmental problems. Enhanced positive perceptions of the environment and ecosystems, combined with the understanding that livelihood sustainability, needs to be prioritized and would reinforce environmental protection policies to create greener cities. Moreover, new sustainable jobs in combination with more sustainable human habits represent an opportunity to reinforce environmental policy.
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- 2023
28. Mercury Concentrations in Coastal Heath Forests of Peninsular Malaysia
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Brearley, Francis Q., Mohd Salim, Jamilah, Pisello, Anna Laura, Editorial Board Member, Hawkes, Dean, Editorial Board Member, Bougdah, Hocine, Editorial Board Member, Rosso, Federica, Editorial Board Member, Abdalla, Hassan, Editorial Board Member, Boemi, Sofia-Natalia, Editorial Board Member, Mohareb, Nabil, Editorial Board Member, Mesbah Elkaffas, Saleh, Editorial Board Member, Bozonnet, Emmanuel, Editorial Board Member, Pignatta, Gloria, Editorial Board Member, Mahgoub, Yasser, Editorial Board Member, De Bonis, Luciano, Editorial Board Member, Kostopoulou, Stella, Editorial Board Member, Pradhan, Biswajeet, Editorial Board Member, Abdul Mannan, Md., Editorial Board Member, Alalouch, Chaham, Editorial Board Member, Gawad, Iman O., Editorial Board Member, Nayyar, Anand, Editorial Board Member, Amer, Mourad, Series Editor, Chenchouni, Haroun, editor, Zhang, Zhihua, editor, Bisht, Deepak Singh, editor, Gentilucci, Matteo, editor, Chen, Mingjie, editor, Chaminé, Helder I., editor, Barbieri, Maurizio, editor, Jat, Mahesh Kumar, editor, Rodrigo-Comino, Jesús, editor, Panagoulia, Dionysia, editor, Kallel, Amjad, editor, Biswas, Arkoprovo, editor, Turan, Veysel, editor, Knight, Jasper, editor, Çiner, Attila, editor, Candeias, Carla, editor, and Ergüler, Zeynal Abiddin, editor
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- 2024
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29. Calcium phosphates associated with chondrules in the CR chondrite Queen Alexandra Range (QUE) 99177: Evidence for solar nebular and parent body processes
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Martínez, Marina and Brearley, Adrian J.
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- 2025
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30. Design of heat-resilient housing in hot-arid regions
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Birge, David P., Brearley, Jonathon, Zhang, Zhujing, and Norford, Leslie K.
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- 2025
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31. Ageing and Social Work
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Brearley, Paul, primary
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- 2024
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32. Challenges and guidance for implementing social distancing for COVID-19 in care homes: a mixed methods rapid review
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Joanne M Fitzpatrick, Anne Marie Rafferty, Shereen Hussein, Richard Adams, Lindsay Rees, Sally Brearley, Sarah Sims, Amit Desai, and Ruth Harris
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care homes ,covid-19 pandemic ,isolation measures ,mixed-methods ,older people ,social distancing ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 - Abstract
Background Older people living in care homes are at high risk of poor health outcomes and mortality if they contract coronavirus disease 2019. Protective measures include social distancing and isolation, although implementation is challenging. Objectives To explore the real-life experiences of social distancing and isolation in care homes for older people, and to develop a toolkit of guidance and resources. Design A mixed-methods, phased design. Setting Six care homes in England caring for older adults. Participants Care home staff (n = 31), residents (n = 17), family members (n = 17), senior health and care leaders (n = 13). Methods A rapid review to assess the social distancing and isolation measures used by care homes to control the transmission of coronavirus disease 2019 and other infectious diseases (phase 1), in-depth case studies of six care homes, involving remote individual interviews with staff, residents and families, collection of policies, protocols and routinely collected care home data, remote focus groups with senior health and care leaders (phase 2) and stakeholder workshops to co-design the toolkit (phase 3). Interview and focus group data and care home documents were analysed using thematic analysis and care home data using descriptive statistics. Results The rapid review of 103 records demonstrated limited empirical evidence and the limited nature of policy documentation around social distancing and isolation measures in care homes. The case studies found that social distancing and isolation measures presented moral dilemmas for staff and often were difficult, and sometimes impossible to implement. Social distancing and isolation measures made care homes feel like an institution and denied residents, staff and families of physical touch and other forms of non-verbal communication. This was particularly important for residents with cognitive impairment. Care homes developed new visiting modalities to work around social distancing measures. Residents and families valued the work of care homes to keep residents safe and support remote communication. Social distancing, isolation and related restrictions negatively impacted on residents’ physical, psychological, social and cognitive well-being. There were feelings of powerlessness for families whose loved ones had moved into the care home during the pandemic. It was challenging for care homes to capture frequent updates in policy and guidance. Senior health and care leaders shared that the care home sector felt isolated from the National Health Service, communication from government was described as chaotic, and trauma was inflicted on care home staff, residents, families and friends. These multiple data sources have informed the co-design of a toolkit to care for residents, families, friends and care home staff. Limitations The review included papers published in English language only. The six care homes had a Care Quality Commission rating of either ‘good’ or ‘outstanding’. There was a lack of ethnic diversity in resident and family participants. Conclusions Care homes implemented innovative approaches to social distancing and isolation with varying degrees of success. A legacy of learning can help rebuild trust at multiple levels and address trauma-informed care for residents, families, friends and staff. Future work can include evaluation of the toolkit, research to develop a trauma-informed approach to caring for the care home sector and co-designing and evaluating an intervention to enable residents with different needs to transition to living well in a care home. Funding This award was funded by the National Institute for Health and Care Research (NIHR) Health and Social Care Delivery Research programme (NIHR award ref: NIHR132541) and is published in full in Health and Social Care Delivery Research; Vol. 12, No. 45. See the NIHR Funding and Awards website for further award information. Plain language summary Older people living in care homes are at risk of poor health and death if they get coronavirus disease 2019 (COVID-19). To protect older people from COVID-19, care homes use different measures, including social distancing and isolation. These measures can be challenging. Our research aimed to explore the challenges and solutions to using social distancing and isolation in care homes. We reviewed existing evidence to examine how care homes have used social distancing and isolation measures to control the spread of COVID-19 and other contagious diseases. We investigated how social distancing and isolation measures have been used in six care homes in England. We spoke with residents, families and staff. We collected care home documents and other data. We held group discussions with senior health and care leaders. The review showed limited research and the limited nature of policy documentation on social distancing and isolation measures. Interviews revealed that social distancing and isolation measures were difficult, and sometimes impossible, for staff to implement. These measures made care homes feel less homely and inhibited touch, for example hugs. Residents and families valued the work of care homes to keep residents safe and the use of technology for keeping connected. Social distancing, isolation and related restrictions negatively affected residents’ physical, psychological, social and cognitive well-being. There were feelings of powerlessness for families whose loved ones had moved into the care home during the pandemic. It was challenging for care homes to capture frequent updates in policy and guidance. Senior health and care leaders shared that the care home sector felt isolated from the National Health Service, communication from government to the care home sector was described as chaotic and trauma was inflicted on care home staff, residents, families and friends. These findings have been used to design guidance to help care homes implement social distancing and isolation measures both now and for any future outbreaks. Scientific summary Background Older people living in care homes (CHs) (i.e. homes that provide residential and/or nursing care) often have complex health and care needs and are at high risk of poor health outcomes and mortality, especially if they contract coronavirus disease 2019 (COVID-19). To protect older people from COVID-19, CHs use interventions such as social distancing and isolation, but these measures have been reported as challenging. Research is needed to explore and understand the challenges experienced by CHs endeavouring to implement these interventions while mitigating any negative consequences. Objectives The overall aim of the study was to explore and understand the real-life experiences of social distancing and isolation measures for older people living in CHs in England from the perspective of multiple stakeholders, and to develop a toolkit of evidence-informed guidance and resources for CHs now and for future outbreaks. The study objectives were as follows: (1) to investigate the mechanisms and measures used by CHs currently and previously to socially distance and isolate older people to prevent and control the spread of COVID-19 and other infectious and contagious diseases (2) to examine the experiences of residents and families/friends of social distancing and isolation measures during the COVID-19 pandemic, including how these measures impacted upon their well-being and how they adapted to change (3) to explore how registered nurses and care staff adapted to and managed the delivery of personal, social and psychological care for residents with different needs while maintaining social distancing and isolation measures (4) to identify how CH managers, owners and external stakeholders developed, managed and adapted policies, procedures and protocols to implement social distancing and isolation measures including workforce organisation, training and support, use of communal spaces, visiting, and working with external health and social care professionals (5) to use the findings to develop a toolkit of evidence-informed guidance and resources, including a mosaic film, detailing which interventions and strategies for social distancing and isolation work well and which do not work in specific situations and contexts to support decision-making about health and care delivery in CHs and to facilitate resilience-building for future planning. Methods A mixed-methods, phased design was undertaken to identify the challenges, consequences and solutions to implementing social distancing and isolation measures in CHs for older adults to prevent and control the spread of COVID-19. The study was conducted in three phases: (1) a rapid evidence review of measures used to prevent or control the transmission of COVID-19 and other infectious diseases in CHs for older people, following the guidance for conducting rapid reviews1 (2) in-depth case studies of six purposively sampled CHs in England involving individual interviews with care staff, managers, residents and family/friends, the collection of social distancing and isolation policies/protocols and routinely collected CH data, and focus groups with purposively sampled CH owners and external stakeholders. Reporting guidance for qualitative research was used2 (3) development of a toolkit of evidence-informed guidance and resources, and a mosaic film for CHs. The findings from earlier phases were used in two co-design workshops with external stakeholders to develop the toolkit. Findings from the 103 papers included in the rapid review were synthesised using tables and a narrative summary organised around the review questions. Interview audio-recordings were transcribed verbatim and data analysed using thematic analysis. Descriptive summary statistics described the quantitative data collected. For the CH documents, information was collated around the key themes of social distancing, isolation, cohorting, zoning and other restrictions. Concurrent data collection and analysis informed decision-making about the need for further data and from which source. Patient and public involvement (PPI) was an integral part of this study, informing its design, method, analysis and dissemination. PPI group members also participated in online workshops to contribute to the co-design of the toolkit. Results The rapid review highlighted the following: There is a lack of empirical evidence around how measures to prevent or control COVID-19 and other infectious diseases are implemented in CHs. Most papers were grey literature or policy documents, which were mainly descriptive, or opinion based. Furthermore, these interventions were generally mentioned as part of a wider discussion of COVID-19 strategies and were not the primary focus of the papers. Key interventions for preventing and controlling the transmission of COVID-19 and other infectious diseases in CHs for older people include social distancing; isolation of residents and staff; restrictions for residents, family members and staff; zoning and cohorting; and surveillance. Evaluative research on the use of these interventions in CHs is needed urgently. The six case study sites were geographically spread and all had a Care Quality Commission rating of good (n = 4) or outstanding (n = 2). All were part of organisations (ranging in size from 7 to 114 CHs per organisation, and between 767 and 5875 beds per organisation). Four of the CHs were part of privately run organisations, and two were part of voluntary/not-for-profit organisations. One CH had a ‘dual’ registration, three had a ‘nursing’ registration and two were registered as ‘without nursing’. Most provided some specialist care such as for dementia, learning disabilities, physical and mental health problems. The number of beds offered ranged between 37 and 73. One CH comprised a household of 12 residents within a village complex. Care homes varied on the number of positive COVID-19 cases, for example one reported only one case between March 2020 and February 2021, while another reported 27 cases within the month November 2020 alone – this home had opened a specially allocated ‘COVID-ward’. In one CH no residents had died within 28 days of a positive COVID-19 test, while 10 residents had died from another home. Policies and protocols about social distancing and isolation measures were collected from each CH and compared. Key findings were as follows: There was significant variation between CHs in the content, length and level of detail presented in policy and guidance documents. Capturing the frequent updates in guidance was challenging with documents sometimes being repetitive and unclear. Many documents had further, embedded documents or links to government guidance that provided a great deal of information, which might be unrealistic for CH staff to read. Shorter documents were less comprehensive and may not provide the necessary detail to guide CH staff. None of the documents included guidance on staff training and development. Research at the case study sites included individual interviews with 31 CH staff. Key findings were as follows: The impact that the COVID-19 pandemic had upon CH staff must not be underestimated. Staff reported trauma and emotional distress. For many staff, the difficulties experienced during the pandemic were compounded by the government’s response to CHs. Some staff felt they had been abandoned by the government, while others criticised the ‘blanket approach’ to government guidance and the rapidly changing rules for CHs. Care home managers valued the support of their senior leadership to help them interpret and implement government guidance. Staff talked of the difficulties of ‘policing’ social distancing measures while simultaneously trying to maintain a sense of ‘normality’ for their residents. Although staff and residents were supposed to maintain a social distance from each other, this was often impossible to uphold when providing personal care. Care homes were perceived as a resident’s home rather than an institution, which made some staff question whether social distancing was appropriate. Many staff felt that social distancing measures denied residents (and themselves) of the important need for touch, as hugs were felt to have a vital role in CH life. Understanding fully the impact on residents living with dementia was recognised as a challenge and not always possible to achieve. The design and layout of CHs meant that there was not always the physical space for social distancing to be implemented. Staff felt that new admissions to CHs had the most difficult experience with isolation regulations. For some managers, isolation measures went against the ethos of the CH environment and ruined the family feel of the CH. The requirement for residents to isolate when returning from hospital could lead to a reluctance in residents to attend hospital appointments and a disinclination of staff to refer residents for hospital care. Several different resident restrictions were implemented in CHs, but restrictions around residents leaving the home, changes to food preparation/delivery and visitor restrictions were perceived to have the greatest negative impact. On occasions, staff became a target of anger and frustration from residents and their families, who could not comprehend that they were being prevented from seeing each other. Good support from CH management was considered by staff to make the process of implementing these measures easier. Individual interviews were conducted with 17 residents and 17 family members. Key findings were as follows: The experiences of residents and families were varied, and their impact was influenced by the existing pattern of relationships residents and families maintained within and beyond the CH. Residents and families valued the work of the CHs in keeping residents safe. They accepted the need for restrictions. Residents and families appreciated the support they received in communicating with one another virtually and the importance of this communication for residents’ health and well-being. Measures relating to isolation were particularly difficult for residents, particularly for those unable to communicate with the outside world through technology. Measures to make isolation less difficult for residents included ensuring that they were entertained purposefully with regular socially distanced visits from staff and various resources to occupy their time. Creative approaches to activities for residents not isolating were also evidenced, for example indoor gardening, yoga and quizzes. Social distancing made aspects of CH life and social visiting difficult and sometimes unsatisfactory; residents and families missed physical touch and other non-verbal forms of communication. This was particularly important for residents with cognitive impairment. Residents and families were involved with staff in complex judgements of risk, choice and control, which were complicated by two factors. First, families (and some residents) were aware that those in CHs were in the twilight of their lives and that time was ebbing away. Second, many families and residents were also learning how to manage their relationships in the new living context of a CH. Two focus groups were conducted with a purposive sample of 13 external senior health and care leaders. Key findings were as follows: Isolation of the sector: the sector felt cut off from the National Health Service (NHS) and pre-pandemic sources of service and support. Government guidance for CHs and communication processes: ‘chaos’ described the approach to cascading information to CHs, especially in the first wave of the pandemic. Visiting: regulations evolved throughout the different waves of the pandemic and led to variations in interpreting and implementing visiting guidance. Trauma: as the pandemic wore on and the different waves and variants emerged, there was a need to take account of the broader health and well-being of residents, families, visitors and the workforce. Trauma impacted at several different levels – for staff, residents and family members. Implications for practice and policy For practice Implications of the study findings for practice are captured in our toolkit for supporting CHs with social distancing and isolation measures. These are framed around six areas: caring for residents when they are social distancing; caring for residents when they are isolating; supporting residents, families and friends to communicate when visiting is not permitted; supporting visits from families and friends when visiting is allowed but with restrictions; caring for care staff; and caring for managers. For policy The study findings can inform discussions involving CH providers, managers and external stakeholders to enhance understanding of social distancing and isolation measures for residents – consequences, challenges, solutions and learning. Our findings also have implications about how guidelines are developed and disseminated. They reinforce the need for CHs and social care to be considered as an integral part of integrated care systems, to ensure that actions taken during national emergencies fully account for the impact on all parts of health and social care. Our findings can inform discussions about developing digital technologies to help residents with different needs stay connected with families and friends, and for CHs to communicate effectively with residents’ families and friends. Our findings can contribute to the content of the digital hub for the social care workforce. Recommendations for further research This study has identified that research is needed in several areas including the following: Evaluations of the toolkit. Evaluation of social distancing and isolation measures used in CHs to prepare for future pandemics. Research to develop and evaluate remote social interaction for residents living with dementia and their families. Research to understand what a trauma-informed approach looks like for the CH sector – to care for residents, families, friends and staff in CHs caring for older people. Research to co-design and evaluate an intervention to enable residents with different needs to transition to living well in a CH. The study of an intervention that cares for families and friends. Conclusions The CH sector was ill-prepared and under-resourced for the COVID-19 pandemic. During the pandemic and for any further surges, it is paramount that CH services are safe, effective, caring, responsive to individual needs and well-led. The loss of older people living in CHs due to COVID-19 has been substantial; it is essential to learn from this devastation, to understand the consequences, challenges, solutions and to evaluate these solutions. Evidence to support learning and recovery of the CH sector from the pandemic and to inform policy-making is paramount. Care homes need evidence-informed guidance that sets out what and how social distancing and isolation measures should be operationalised, while meeting residents’ individual needs. Our toolkit is designed to capture such innovative approaches. Our study makes an important contribution to this learning and recovery, as one of the first to study the challenges and solutions to implementing social distancing and isolation measures for older people living in CHs in England. Funding This award was funded by the National Institute for Health and Care Research (NIHR) Health and Social Care Delivery Research programme (NIHR award ref: NIHR132541) and is published in full in Health and Social Care Delivery Research; Vol. 12, No. 45. See the NIHR Funding and Awards website for further award information.
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- 2024
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33. Autonomous Passage Planning for a Polar Vessel
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Smith, Jonathan D., Hall, Samuel, Coombs, George, Byrne, James, Thorne, Michael A. S., Brearley, J. Alexander, Long, Derek, Meredith, Michael, and Fox, Maria
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Computer Science - Robotics - Abstract
We introduce a method for long-distance maritime route planning in polar regions, taking into account complex changing environmental conditions. The method allows the construction of optimised routes, describing the three main stages of the process: discrete modelling of the environmental conditions using a non-uniform mesh, the construction of mesh-optimal paths, and path smoothing. In order to account for different vehicle properties we construct a series of data driven functions that can be applied to the environmental mesh to determine the speed limitations and fuel requirements for a given vessel and mesh cell, representing these quantities graphically and geospatially. In describing our results, we demonstrate an example use case for route planning for the polar research ship the RRS Sir David Attenborough (SDA), accounting for ice-performance characteristics and validating the spatial-temporal route construction in the region of the Weddell Sea, Antarctica. We demonstrate the versatility of this route construction method by demonstrating that routes change depending on the seasonal sea ice variability, differences in the route-planning objective functions used, and the presence of other environmental conditions such as currents. To demonstrate the generality of our approach, we present examples in the Arctic Ocean and the Baltic Sea. The techniques outlined in this manuscript are generic and can therefore be applied to vessels with different characteristics. Our approach can have considerable utility beyond just a single vessel planning procedure, and we outline how this workflow is applicable to a wider community, e.g. commercial and passenger shipping.
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- 2022
34. Hepatic nonvesicular cholesterol transport is critical for systemic lipid homeostasis
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Xiao, Xu, Kennelly, John Paul, Ferrari, Alessandra, Clifford, Bethan L, Whang, Emily, Gao, Yajing, Qian, Kevin, Sandhu, Jaspreet, Jarrett, Kelsey E, Brearley-Sholto, Madelaine C, Nguyen, Alexander, Nagari, Rohith T, Lee, Min Sub, Zhang, Sicheng, Weston, Thomas A, Young, Stephen G, Bensinger, Steven J, Villanueva, Claudio J, de Aguiar Vallim, Thomas Q, and Tontonoz, Peter
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Medical Biochemistry and Metabolomics ,Medical Physiology ,Biomedical and Clinical Sciences ,Nutrition and Dietetics ,Liver Disease ,Atherosclerosis ,Digestive Diseases ,1.1 Normal biological development and functioning ,Cholesterol ,Biological Transport ,Liver ,Homeostasis ,Fatty Acids ,Medical biochemistry and metabolomics ,Medical physiology ,Nutrition and dietetics - Abstract
In cell models, changes in the 'accessible' pool of plasma membrane (PM) cholesterol are linked with the regulation of endoplasmic reticulum sterol synthesis and metabolism by the Aster family of nonvesicular transporters; however, the relevance of such nonvesicular transport mechanisms for lipid homeostasis in vivo has not been defined. Here we reveal two physiological contexts that generate accessible PM cholesterol and engage the Aster pathway in the liver: fasting and reverse cholesterol transport. During fasting, adipose-tissue-derived fatty acids activate hepatocyte sphingomyelinase to liberate sequestered PM cholesterol. Aster-dependent cholesterol transport during fasting facilitates cholesteryl ester formation, cholesterol movement into bile and very low-density lipoprotein production. During reverse cholesterol transport, high-density lipoprotein delivers excess cholesterol to the hepatocyte PM through scavenger receptor class B member 1. Loss of hepatic Asters impairs cholesterol movement into feces, raises plasma cholesterol levels and causes cholesterol accumulation in peripheral tissues. These results reveal fundamental mechanisms by which Aster cholesterol flux contributes to hepatic and systemic lipid homeostasis.
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- 2023
35. Predictors of Improvement in Parental Stress After the First Three Months at Home with a Medically Fragile Infant
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Postier, Andrea C., Foster, Laurie P., Remke, Stacy, Simpson, Jane, Friedrichsdorf, Stefan J., and Brearley, Sarah G.
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Parenting -- Psychological aspects ,Infants (Newborn) -- Health aspects -- Care and treatment ,Stress (Psychology) -- Demographic aspects ,Health care industry - Abstract
Objectives Little is known about the early stress experiences of parents of infants with serious life-limiting/life-threatening conditions during the initial months after discharge from hospital. The aim of the study was to measure change, and predictors of change, in parenting stress at the time of transition from hospital to home (T1) with a medically fragile infant, and after a 3-month period (T2). Methods Parents of infants identified as meeting [greater than or equal to] 1 palliative care referral criterion were recruited in a Midwestern United States tertiary pediatric hospital (2012-2014) within 2 weeks of hospital discharge. A repeated measures design was used to assess change on a validated parenting stress inventory over the two timepoints (T1 and T2). Fifty-two parents (61 infants) participated at T1 and 44 (85%) at T2. Results On discharge (T1) stress was moderately high 3 months post discharge (T2) overall and domain-specific stress scores improved, except stress related to parent role functioning and participation in their child's medical care. Independent predictors of improvement in overall parenting stress scores (T2-T1) were being a younger parent and having experienced prior pregnancy-related loss. Conclusions for Practice The time of discharge from hospital to home is often stressful for parents of medically fragile infants. Improvements were found during the first 3 months at home, but improvement was minimal for stress related to role function and providing medical care. Past experience with pregnancy-related loss and being younger were associated with improvement in stress across theoretical domains. Screening for stress should be included as part of routine pre- and post-neonatal intensive care unit discharge psychosocial assessments of parents caring for infants with serious illness to ensure their unique support needs continue to be met over time., Author(s): Andrea C. Postier [sup.1] [sup.2] [sup.7] , Laurie P. Foster [sup.3] , Stacy Remke [sup.4] , Jane Simpson [sup.5] , Stefan J. Friedrichsdorf [sup.1] [sup.2] , Sarah G. Brearley [...]
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- 2024
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36. Diagnosing Statistical Education Needs of Health Science Learners
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Amy S. Nowacki, Ann M. Brearley, Robert A. Oster, Emily Slade, Katrina L. Devick, Matthew J. Hayat, and Sally W. Thurston
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Biostatistics ,Health science learner ,Research training ,Statistical competency ,Probabilities. Mathematical statistics ,QA273-280 ,Special aspects of education ,LC8-6691 - Abstract
AbstractMany types of health science learners, including clinical and translational scientists, students, researchers, and clinicians, seek to increase their knowledge of biostatistics. These learners are heterogeneous in their field, career stage and career focus. Based on the collective experience of an expert panel with over 115 years teaching statistics to health science learners, we propose a framework for considering the needs of health science learners motivated by their career goals. This framework defines four types of health science learners seeking statistical training: (a) consumers, (b) “milestone makers”, (c) biomedical researchers with statistical support, and (d) biomedical researchers without statistical support. Each type of learner has different levels at which they need to understand statistical topics for their careers, such as when to use a particular statistical method or why a given method works; these differing levels of understanding are detailed in our proposed framework. Further, this framework identifies the expectations that each of these types of learners should have for gaining statistical knowledge in a single seminar, multiple seminars, a seminar series, an accredited course, or a certificate/degree program. Advantages and disadvantages of widely used educational formats for these learners are also described. From this work, health science learners seeking biostatistical training or those who are planning a training program for others can gain insight into identifying appropriate statistical training goals for the type of learner with which they identify. Statistical educators may also use these guidelines to help health science learners align expectations for various types of training.
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- 2024
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37. LC‐ICP‐MS analysis of inositol phosphate isomers in soil offers improved sensitivity and fine‐scale mapping of inositol phosphate distribution
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Joseph J. Carroll, Colleen Sprigg, Graham Chilvers, Ignacio Delso, Megan Barker, Filipa Cox, David Johnson, and Charles A. Brearley
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inositol phosphate isomers ,LC‐ICP‐MS ,nitrogen fertilization ,phosphorus speciation ,phytate ,soil 31P NMR ,Ecology ,QH540-549.5 ,Evolution ,QH359-425 - Abstract
Abstract Organic forms of phosphorus (P) prevail in soils and their quantification is vital to better understand global biogeochemical cycles. P speciation in soil is commonly assessed by 31P NMR spectroscopy of sodium hydroxide‐EDTA (NaOH‐EDTA) extracts. A liquid chromatography‐inductively coupled plasma‐mass spectrometry (LC‐ICP‐MS) method that employs NaOH‐EDTA is described. Comparison with 31P NMR shows that LC‐ICP‐MS is up to three orders of magnitude more sensitive. It allows measurement in samples as small as 1 mg. We reveal variation of inositol phosphate distribution in Swedish boreal forest soil and identify myo‐ and scyllo‐inositol hexakisphosphates and other isomers including scyllo‐inositol pentakisphosphate. Speciation of the major inositol phosphates was not altered by long‐term nitrogen fertilization.
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- 2024
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38. TEM analyses of in situ presolar grains from unequilibrated ordinary chondrite LL3.0 Semarkona
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Singerling, Sheryl A., Nittler, Larry R., Barosch, Jens, Dobrica, Elena, Brearley, Adrian J., and Stroud, Rhonda M.
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Astrophysics - Earth and Planetary Astrophysics ,Physics - Chemical Physics ,Physics - Geophysics - Abstract
We investigated six presolar grains from very primitive regions of the matrix in the unequilibrated ordinary chondrite Semarkona with TEM. These grains include one SiC, one oxide (Mg-Al spinel), and four silicates. Structural and elemental compositional studies of presolar grains located within their meteorite hosts have the potential to provide information on conditions and processes throughout the grains' histories. Our analyses show that the SiC and spinel grains are stoichiometric and well crystallized. In contrast, the majority of the silicate grains are non-stoichiometric and poorly crystallized. These findings are consistent with previous TEM studies of presolar grains from interplanetary dust particles and chondritic meteorites. We interpret the poorly crystalline nature, non-stoichiometry, more Fe- rather than Mg-rich compositions, and/or compositional heterogeneities as features of the formation by condensation under non-equilibrium conditions. Evidence for parent body alteration includes rims with mobile elements (S or Fe) on the SiC grain and one silicate grain. Other features characteristic of secondary processing in the interstellar medium, the solar nebula, and/or on parent bodies, were not observed or are better explained by processes operating in circumstellar envelopes. In general, there was very little overprinting of primary features of the presolar grains by secondary processes (e.g., ion irradiation, grain-grain collisions, thermal metamorphism, aqueous alteration). This finding underlines the need for additional TEM studies of presolar grains located in the primitive matrix regions of Semarkona, to address gaps in our knowledge of presolar grain populations accreted to ordinary chondrites., Comment: 50 pages including supplementary materials
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- 2022
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39. Can Olive Trees Be Used as Bioindicators of Pollution on the Island of Malta?
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Brearley, Francis, Sultana, Daniel, Lageard, Jonathan, Pisello, Anna Laura, Editorial Board Member, Hawkes, Dean, Editorial Board Member, Bougdah, Hocine, Editorial Board Member, Rosso, Federica, Editorial Board Member, Abdalla, Hassan, Editorial Board Member, Boemi, Sofia-Natalia, Editorial Board Member, Mohareb, Nabil, Editorial Board Member, Mesbah Elkaffas, Saleh, Editorial Board Member, Bozonnet, Emmanuel, Editorial Board Member, Pignatta, Gloria, Editorial Board Member, Mahgoub, Yasser, Editorial Board Member, De Bonis, Luciano, Editorial Board Member, Kostopoulou, Stella, Editorial Board Member, Pradhan, Biswajeet, Editorial Board Member, Abdul Mannan, Md., Editorial Board Member, Alalouch, Chaham, Editorial Board Member, Gawad, Iman O., Editorial Board Member, Nayyar, Anand, Editorial Board Member, Amer, Mourad, Series Editor, Ksibi, Mohamed, editor, Negm, Abdelazim, editor, Hentati, Olfa, editor, Ghorbal, Achraf, editor, Sousa, Arturo, editor, Rodrigo-Comino, Jesus, editor, Panda, Sandeep, editor, Lopes Velho, José, editor, El-Kenawy, Ahmed M., editor, and Perilli, Nicola, editor
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- 2024
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40. Wild pigs influence tropical forest soil microbial communities in a forest-agriculture mosaic landscape
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Brearley, Francis Q., Song, Hokyung, Tripathi, Binu M., Dong, Ke, Zin, Noraziah M., Abdul Rachman, Abdul Rahim, Ickes, Kalan, Adams, Jonathan M., and Luskin, Matthew S.
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- 2024
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41. The inositol phosphate signalling network in physiology and disease
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Kim, Seyun, Bhandari, Rashna, Brearley, Charles A., and Saiardi, Adolfo
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- 2024
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42. The safety of magnetic resonance imaging contrast agents
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Amy Cunningham, Martin Kirk, Emily Hong, Jing Yang, Tamara Howard, Adrian Brearley, Angelica Sáenz-Trevizo, Jacob Krawchuck, John Watt, Ian Henderson, Karol Dokladny, Joshua DeAguero, G. Patricia Escobar, and Brent Wagner
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gadolinium ,metals ,gadodiamide ,magnetic resonance imaging contrast ,renal tubular epithelium ,mitochondriopathy ,Toxicology. Poisons ,RA1190-1270 - Abstract
Gadolinium-based contrast agents are increasingly used in clinical practice. While these pharmaceuticals are verified causal agents in nephrogenic systemic fibrosis, there is a growing body of literature supporting their role as causal agents in symptoms associated with gadolinium exposure after intravenous use and encephalopathy following intrathecal administration. Gadolinium-based contrast agents are multidentate organic ligands that strongly bind the metal ion to reduce the toxicity of the metal. The notion that cationic gadolinium dissociates from these chelates and causes the disease is prevalent among patients and providers. We hypothesize that non-ligand-bound (soluble) gadolinium will be exceedingly low in patients. Soluble, ionic gadolinium is not likely to be the initial step in mediating any disease. The Kidney Institute of New Mexico was the first to identify gadolinium-rich nanoparticles in skin and kidney tissues from magnetic resonance imaging contrast agents in rodents. In 2023, they found similar nanoparticles in the kidney cells of humans with normal renal function, likely from contrast agents. We suspect these nanoparticles are the mediators of chronic toxicity from magnetic resonance imaging contrast agents. This article explores associations between gadolinium contrast and adverse health outcomes supported by clinical reports and rodent models.
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- 2024
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43. Editorial: 'How Communities and Research Institutions Work Together to Dismantle Structural Racism and Advance Health Equity'
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J. Robin Moon, Ann M. Brearley, and Drissa Makan Toure
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Social Sciences - Published
- 2024
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44. Is Mainstreaming Traditional Knowledge a Bridge for Climate Policy for Adaptation: The Ghana Case
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Baidoo, Anastasia Ago, primary, Leal Filho, Walter, additional, and Brearley, Francis Q., additional
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- 2023
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45. Long-Range Route-planning for Autonomous Vehicles in the Polar Oceans
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Fox, Maria, Meredith, Michael, Brearley, J. Alexander, Jones, Dan, and Long, Derek
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Computer Science - Robotics ,Computer Science - Artificial Intelligence - Abstract
There is an increasing demand for piloted autonomous underwater vehicles (AUVs) to operate in polar ice conditions. At present, AUVs are deployed from ships and directly human-piloted in these regions, entailing a high carbon cost and limiting the scope of operations. A key requirement for long-term autonomous missions is a long-range route planning capability that is aware of the changing ice conditions. In this paper we address the problem of automating long-range route-planning for AUVs operating in the Southern Ocean. We present the route-planning method and results showing that efficient, ice-avoiding, long-distance traverses can be planned., Comment: Submitted to the AMS Journal of Atmospheric and Oceanic Technology
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- 2021
46. A Biostatistical Literacy Course: Teaching Medical and Public Health Professionals to Read and Interpret Statistics in the Published Literature
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Ann M. Brearley, Kollin W. Rott, and Laura J. Le
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We present a unique and innovative course, Biostatistical Literacy, developed at the University of Minnesota. The course is aimed at public health graduate students and health sciences professionals. Its goal is to develop students' ability to read and interpret statistical results in the medical and public health literature. The content spans the typical first-semester introductory material, including data summaries, hypothesis tests and interval estimation, and simple linear regression, as well as material typically presented in a second introductory course, including multiple linear regression, logistic regression, and time-to-event methods. The focus is on when to use a method and how to interpret the results; no statistical software computing is taught. A flipped classroom approach is used, where students are first exposed to the material outside of class, and class time is devoted to actively exploring and applying the concepts in greater depth. The course structure, the class activities, and feedback from students will be shared. Supplementary materials for this article are available online.
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- 2023
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47. Evaluating Sex Differences in the Characteristics and Outcomes of Lupus Nephritis: A Systematic Review and Meta-Analysis
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Salman B. Mahmood, Muhammad Aziz, Deepthi Malepati, Wade Lee-Smith, Justin Clark, Ann Brearley, and Patrick H. Nachman
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lupus nephritis ,male ,men ,gender ,sex ,meta-analysis ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Introduction: More frequent and severe lupus nephritis (LN) has been reported in men compared to women, but data are limited and inconsistent. We conducted a meta-analysis of the literature to compare the histopathologic findings and outcomes between men and women with biopsy-proven LN. Methods: A systematic search of MEDLINE, Embase, Cochrane, and Web of Science databases was conducted through February 2021. Clinical information was extracted and synthesized from 25 studies that met inclusion criteria (1,210 men and 6,635 women). Pooled odds ratios (OR) with corresponding 95% confidence intervals (CIs) were generated via meta-analysis, and meta-regression was performed to assess the impact of several covariates, both using random-effects models. Results: Twenty studies reported kidney histopathology, eleven reported kidney outcomes, and eight reported mortality rates. Men had greater odds of class IV ± V LN (OR 1.26, 95% CI: 1.01–1.56), and the composite of end-stage kidney disease, persistent eGFR
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- 2024
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48. Intentional rounding: a realist evaluation using case studies in acute and care of older people hospital wards
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Mary Leamy, Sarah Sims, Ros Levenson, Nigel Davies, Sally Brearley, Stephen Gourlay, Giampiero Favato, Fiona Ross, and Ruth Harris
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Intentional rounding ,Nursing care delivery ,Patient safety ,Fundamental nursing care ,Compassionate care ,Checklist ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background In response to concerns about high hospital mortality rates, patient and carer complaints, a Mid Staffordshire NHS Foundation Trust public inquiry was conducted at the request of the UK government. This inquiry found serious failures in the quality of basic care provided and as a consequence, recommended that patients should have more regular visits, organised at predictable times from nursing staff. Intentional rounding, also known as nursing ward rounds, was widely adopted to meet this need. Objective To test, refine or refute eight programme theories to understand what works, for whom, and in what circumstances. Setting Six wards (older people and acute wards) in three NHS trusts in England. Participants Board level and senior nursing managers (N = 17), nursing ward staff (N = 33), allied health and medical professionals (N = 26), patients (N = 34) and relatives (N = 28) participated in an individual, in-depth interview using the realist method. In addition, ward-based nurses (N = 39) were shadowed whilst they conduced intentional rounds (240 rounds in total) and the direct care of patients (188 h of patient care in total) was observed. Methods The mixed methods design included: Phase (1) Theory development - A realist synthesis was undertaken to identify any programme theories which were tested, refined and/or refuted, using data from phases 2 and 3; Phase (2) A survey of all English NHS acute Trusts; Phase (3) Six case studies of wards involving realist interviews, shadowing and non-participant observations, analysis of ward outcome and cost data; and Phase (4) Synthesis of findings from phases 1, 2 and 3. Results The realist synthesis identified eight programme theories of intentional rounding: ‘Consistency and comprehensiveness’, ‘Accountability’, ‘Visibility of nurses’, ‘Anticipation’, ‘Allocated time to care’, ‘Nurse-patient relationships’, ‘Multi-disciplinary teamwork and communication’ and ‘Patient empowerment’. Key findings showed that of the original eight programme theories of intentional rounding, only two partially explained how the intervention worked (‘Consistency and comprehensiveness’ and ‘Accountability’). Of the remaining six programme theories, the evidence for two was inconclusive (‘Visibility of nurses’ and ‘Anticipation’) and there was no evidence for four (‘Allocated time to care’; ‘Nurse-patient relationships’; ‘Multi-disciplinary teamwork and communication’; and ‘Patient empowerment’). Conclusions This first theory-informed evaluation of intentional rounding, demonstrates that the effectiveness of intentional rounding in the English healthcare context is very weak. Furthermore, the evidence collected in this study has challenged and refuted some of the underlying assumptions about how intentional rounding works. This study has demonstrated the crucial role context plays in determining the effectiveness of an intervention and how caution is needed when implementing interventions developed for the health system of one country into another.
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- 2023
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49. Effects of Mixture Distribution on the Structure and Propagation of Turbulent Stratified Slot-Jet Flames
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Brearley, Peter, Ahmed, Umair, and Chakraborty, Nilanjan
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- 2023
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50. Biogeosciences Perspectives on Integrated, Coordinated, Open, Networked (ICON) Science
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Dwivedi, D, Santos, ALD, Barnard, MA, Crimmins, TM, Malhotra, A, Rod, KA, Aho, KS, Bell, SM, Bomfim, B, Brearley, FQ, Cadillo‐Quiroz, H, Chen, J, Gough, CM, Graham, EB, Hakkenberg, CR, Haygood, L, Koren, G, Lilleskov, EA, Meredith, LK, Naeher, S, Nickerson, ZL, Pourret, O, Song, H‐S, Stahl, M, Taş, N, Vargas, R, and Weintraub‐Leff, S
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Earth Sciences ,Environmental Sciences ,Physical Sciences ,Integrated ,Coordinated ,Open ,Networked ,community ,citizen ,Earth sciences ,Environmental sciences ,Physical sciences - Abstract
This article is composed of three independent commentaries about the state of Integrated, Coordinated, Open, Networked (ICON) principles in the American Geophysical Union Biogeosciences section, and discussion on the opportunities and challenges of adopting them. Each commentary focuses on a different topic: (a) Global collaboration, technology transfer, and application (Section 2), (b) Community engagement, community science, education, and stakeholder involvement (Section 3), and (c) Field, experimental, remote sensing, and real-time data research and application (Section 4). We discuss needs and strategies for implementing ICON and outline short- and long-term goals. The inclusion of global data and international community engagement are key to tackling grand challenges in biogeosciences. Although recent technological advances and growing open-access information across the world have enabled global collaborations to some extent, several barriers, ranging from technical to organizational to cultural, have remained in advancing interoperability and tangible scientific progress in biogeosciences. Overcoming these hurdles is necessary to address pressing large-scale research questions and applications in the biogeosciences, where ICON principles are essential. Here, we list several opportunities for ICON, including coordinated experimentation and field observations across global sites, that are ripe for implementation in biogeosciences as a means to scientific advancements and social progress.
- Published
- 2022
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