4,103 results on '"Brashear A"'
Search Results
2. Rebuilding the Rule of Law in the Era of Democratic Backsliding
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Tiede, Lydia Brashear
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- 2024
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3. The DEAD-box RNA helicase PfDOZI imposes opposing actions on RNA metabolism in Plasmodium falciparum
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Min, Hui, Liang, Xiaoying, Wang, Chengqi, Qin, Junling, Boonhok, Rachasak, Muneer, Azhar, Brashear, Awtum M., Li, Xiaolian, Minns, Allen M., Adapa, Swamy Rakesh, Jiang, Rays H. Y., Ning, Gang, Cao, Yaming, Lindner, Scott E., Miao, Jun, and Cui, Liwang
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- 2024
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4. An estrogen receptor α-derived peptide improves glucose homeostasis during obesity
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Yang, Wanbao, Jiang, Wen, Liao, Wang, Yan, Hui, Ai, Weiqi, Pan, Quan, Brashear, Wesley A., Xu, Yong, He, Ling, and Guo, Shaodong
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- 2024
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5. Cultivating Cyberinfrastructure Careers through Student Engagement at Texas A&M University High Performance Research Computing.
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Wesley Brashear, Lisa M. Perez, Elizabeth Leake, Sandra B. Nite, Marinus Pennings, Sheri Stebenne, Honggao Liu, and Dhruva Chakravorty
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- 2024
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6. Exploring the Viability of Composable Architectures to Overcome Memory Limitations in High Performance Computing Workflows.
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Wesley Brashear, Varshani Reddy, Steven Baum, Dhruva Chakravorty, Francis Dang, Lisa M. Perez, and Honggao Liu
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- 2024
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7. BRICCs: Building Pathways to Research Cyberinfrastructure at Under Resourced Institutions.
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Dhruva Chakravorty, Wesley Brashear, Sarah K. Janes, Tabitha Kripa Samuel, Ralph Zottola, Fidelis Ngang, Stephen Miller, Lisa M. Perez, and Honggao Liu
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- 2024
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8. Performance of Molecular Dynamics Acceleration Strategies on Composable Cyberinfrastructure.
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Richard Lawrence, Dhruva K. Chakravorty, Lisa M. Perez, Honggao Liu, Zhenhua He, Wesley Brashear, Joshua Winchell, James X. Mao, and Chun-Yaung Lu
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- 2024
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9. Container Adoption in Campus High Performance Computing at Texas A&M University.
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Richard Lawrence, Dhruva K. Chakravorty, Lisa M. Perez, Wesley Brashear, Zhenhua He, Joshua Winchell, and Honggao Liu
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- 2024
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10. Through Rose-Colored Glasses: How Protective Behaviors Impact Trauma-Informed Decision Making
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Brashear, Crystal A., Hickman, Donna, Mathews, Rebecca L., Thomas, Nancy, Stark, Cortny, editor, Tapia Jr, Jose Luis, editor, Rogalla, Kylie, editor, and Bunch, Kate, editor
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- 2024
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11. Workplace Hazards in Trauma-Informed Practice: Ensuring Helping Provider Health and Well-being
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Mathews, Rebecca L., Thomas, Nancy, Brashear, Crystal A., Hickman, Donna, Stark, Cortny, editor, Tapia Jr, Jose Luis, editor, Rogalla, Kylie, editor, and Bunch, Kate, editor
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- 2024
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12. The extracellular matrix of dystrophic mouse diaphragm accounts for the majority of its passive stiffness and is resistant to collagenase digestion
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Wohlgemuth, Ross P, Feitzinger, Ryan M, Henricson, Kyle E, Dinh, Daryl T, Brashear, Sarah E, and Smith, Lucas R
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Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Biological Sciences ,Engineering ,Biomedical Engineering ,Medical Physiology ,Duchenne/ Becker Muscular Dystrophy ,Bioengineering ,Rare Diseases ,Muscular Dystrophy ,Pediatric ,Musculoskeletal ,Collagenase ,Decellularization ,Fibrosis ,Skeletal Muscle Mechanics - Abstract
The healthy skeletal muscle extracellular matrix (ECM) has several functions including providing structural integrity to myofibers, enabling lateral force transmission, and contributing to overall passive mechanical properties. In diseases such as Duchenne Muscular dystrophy, there is accumulation of ECM materials, primarily collagen, which results in fibrosis. Previous studies have shown that fibrotic muscle is often stiffer than healthy muscle, in part due to the increased number and altered architecture of collagen fibers within the ECM. This would imply that the fibrotic matrix is stiffer than the healthy matrix. However, while previous studies have attempted to quantify the extracellular contribution to passive stiffness in muscle, the outcomes are dependent on the type of method used. Thus, the goals of this study were to compare the stiffness of healthy and fibrotic muscle ECM and to demonstrate the efficacy of two methods for quantifying extracellular-based stiffness in muscle, namely decellularization and collagenase digestion. These methods have been demonstrated to remove the muscle fibers or ablate collagen fiber integrity, respectively, while maintaining the contents of the extracellular matrix. Using these methods in conjunction with mechanical testing on wildtype and D2.mdx mice, we found that a majority of passive stiffness in the diaphragm is dependent on the ECM, and the D2.mdx diaphragm ECM is resistant to digestion by bacterial collagenase. We propose that this resistance is due to the increased collagen cross-links and collagen packing density in the ECM of the D2.mdx diaphragm. Taken altogether, while we did not find increased stiffness of the fibrotic ECM, we did observe that the D2.mdx diaphragm conveyed resistance against collagenase digestion. These findings demonstrate how different methods for measuring ECM-based stiffness each have their own limitations and can produce different results.
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- 2023
13. Lessons from Professional Identity Development Literature: A Qualitative Content Analysis
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Dollarhide, Colette T., Gibson, Donna M., Brashear, Kayleena L., Huynh, Jenny, Marshall, Bowen, and Robinson, Kristian
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The development of a professional identity as a counselor is the result of training, practice, and integration into a community of professional counselors and is defined as the synthesis of personal and professional behaviors, values, ethics, and worldview. The research on this topic has been plentiful, but this systemic and systematic review of the research literature provides a comprehensive overview of this important concept for counselor training and supervision.
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- 2023
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14. The Emergence of Unique Elective Identities in the Professional Identity Development Research in the Counseling Profession
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Gibson, Donna M., Dollarhide, Colette T., Brashear, Kayleena, Huynh, Jenny, Marshall, Bowen, and Robinson, Kristian
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In this study, a qualitative content analysis of the professional identity development research in counseling was conducted to describe elements of the development of "elective identities" of leader, research, counselor educator, and social justice practitioner. Predisposing, process, and outcome codes reveal experiences and contexts that influence this development in students, educators, and counselors.
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- 2023
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15. The DEAD-box RNA helicase PfDOZI imposes opposing actions on RNA metabolism in Plasmodium falciparum
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Hui Min, Xiaoying Liang, Chengqi Wang, Junling Qin, Rachasak Boonhok, Azhar Muneer, Awtum M. Brashear, Xiaolian Li, Allen M. Minns, Swamy Rakesh Adapa, Rays H. Y. Jiang, Gang Ning, Yaming Cao, Scott E. Lindner, Jun Miao, and Liwang Cui
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Science - Abstract
Abstract In malaria parasites, the regulation of mRNA translation, storage and degradation during development and life-stage transitions remains largely unknown. Here, we functionally characterized the DEAD-box RNA helicase PfDOZI in P. falciparum. Disruption of pfdozi enhanced asexual proliferation but reduced sexual commitment and impaired gametocyte development. By quantitative transcriptomics, we show that PfDOZI is involved in the regulation of invasion-related genes and sexual stage-specific genes during different developmental stages. PfDOZI predominantly participates in processing body-like mRNPs in schizonts but germ cell granule-like mRNPs in gametocytes to impose opposing actions of degradation and protection on different mRNA targets. We further show the formation of stress granule-like mRNPs during nutritional deprivation, highlighting an essential role of PfDOZI-associated mRNPs in stress response. We demonstrate that PfDOZI participates in distinct mRNPs to maintain mRNA homeostasis in response to life-stage transition and environmental changes by differentially executing post-transcriptional regulation on the target mRNAs.
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- 2024
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16. An estrogen receptor α-derived peptide improves glucose homeostasis during obesity
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Wanbao Yang, Wen Jiang, Wang Liao, Hui Yan, Weiqi Ai, Quan Pan, Wesley A. Brashear, Yong Xu, Ling He, and Shaodong Guo
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Science - Abstract
Abstract Estrogen receptor α (ERα) plays a crucial role in regulating glucose and energy homeostasis during type 2 diabetes mellitus (T2DM). However, the underlying mechanisms remain incompletely understood. Here we find a ligand-independent effect of ERα on the regulation of glucose homeostasis. Deficiency of ERα in the liver impairs glucose homeostasis in male, female, and ovariectomized (OVX) female mice. Mechanistic studies reveal that ERα promotes hepatic insulin sensitivity by suppressing ubiquitination-induced IRS1 degradation. The ERα 1-280 domain mediates the ligand-independent effect of ERα on insulin sensitivity. Furthermore, we identify a peptide based on ERα 1-280 domain and find that ERα-derived peptide increases IRS1 stability and enhances insulin sensitivity. Importantly, administration of ERα-derived peptide into obese mice significantly improves glucose homeostasis and serum lipid profiles. These findings pave the way for the therapeutic intervention of T2DM by targeting the ligand-independent effect of ERα and indicate that ERα-derived peptide is a potential insulin sensitizer for the treatment of T2DM.
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- 2024
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17. Seasonal temperatures in West Antarctica during the Holocene
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Jones, Tyler R, Cuffey, Kurt M, Roberts, William HG, Markle, Bradley R, Steig, Eric J, Stevens, C Max, Valdes, Paul J, Fudge, TJ, Sigl, Michael, Hughes, Abigail G, Morris, Valerie, Vaughn, Bruce H, Garland, Joshua, Vinther, Bo M, Rozmiarek, Kevin S, Brashear, Chloe A, and White, James WC
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Physical Geography and Environmental Geoscience ,Biological Sciences ,Ecology ,Earth Sciences ,Climate Change Science ,Geology ,Climate Action ,General Science & Technology - Abstract
The recovery of long-term climate proxy records with seasonal resolution is rare because of natural smoothing processes, discontinuities and limitations in measurement resolution. Yet insolation forcing, a primary driver of multimillennial-scale climate change, acts through seasonal variations with direct impacts on seasonal climate1. Whether the sensitivity of seasonal climate to insolation matches theoretical predictions has not been assessed over long timescales. Here, we analyse a continuous record of water-isotope ratios from the West Antarctic Ice Sheet Divide ice core to reveal summer and winter temperature changes through the last 11,000 years. Summer temperatures in West Antarctica increased through the early-to-mid-Holocene, reached a peak 4,100 years ago and then decreased to the present. Climate model simulations show that these variations primarily reflect changes in maximum summer insolation, confirming the general connection between seasonal insolation and warming and demonstrating the importance of insolation intensity rather than seasonally integrated insolation or season duration2,3. Winter temperatures varied less overall, consistent with predictions from insolation forcing, but also fluctuated in the early Holocene, probably owing to changes in meridional heat transport. The magnitudes of summer and winter temperature changes constrain the lowering of the West Antarctic Ice Sheet surface since the early Holocene to less than 162 m and probably less than 58 m, consistent with geological constraints elsewhere in West Antarctica4-7.
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- 2023
18. Plasmodium vivax populations in the western Greater Mekong Subregion evaluated using a genetic barcode.
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Yubing Hu, Yuling Li, Awtum M Brashear, Weilin Zeng, Zifang Wu, Lin Wang, Haichao Wei, Myat Thu Soe, Pyae Linn Aung, Jetsumon Sattabongkot, Myat Phone Kyaw, Zhaoqing Yang, Yan Zhao, Liwang Cui, and Yaming Cao
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
An improved understanding of the Plasmodium vivax populations in the Great Mekong Subregion (GMS) is needed to monitor the progress of malaria elimination. This study aimed to use a P. vivax single nucleotide polymorphism (SNP) barcode to evaluate the population dynamics and explore the gene flow among P. vivax parasite populations in the western GMS (China, Myanmar and Thailand). A total of 315 P. vivax patient samples collected in 2011 and 2018 from four regions of the western GMS were genotyped for 42 SNPs using the high-throughput MassARRAY SNP genotyping technology. Population genetic analysis was conducted to estimate the genetic diversity, effective population size, and population structure among the P. vivax populations. Overall, 291 samples were successfully genotyped at 39 SNPs. A significant difference was observed in the proportion of polyclonal infections among the five P. vivax populations (P = 0.0012, Pearson Chi-square test, χ2 = 18.1), with western Myanmar having the highest proportion (96.2%, 50/52) in 2018. Likewise, the average complexity of infection was also highest in western Myanmar (1.31) and lowest in northeast Myanmar (1.01) in 2018. The older samples from western China in 2011 had the highest pairwise nucleotide diversity (π, 0.388 ± 0.046), expected heterozygosity (He, 0.363 ± 0.02), and the largest effective population size. In comparison, in the neighboring northeast Myanmar, the more recent samples in 2018 showed the lowest values (π, 0.224 ± 0.036; He, 0.220 ± 0.026). Furthermore, the 2018 northeast Myanmar parasites showed high and moderate genetic differentiation from other populations with FST values of 0.162-0.252, whereas genetic differentiation among other populations was relatively low (FST ≤ 0.059). Principal component analysis, phylogeny, and STRUCTURE analysis showed that the P. vivax population in northeast Myanmar in 2018 substantially diverged from other populations. Although the 42 SNP barcode is a valuable tool for tracking parasite origins of worldwide parasite populations, a more extended barcode with additional SNPs is needed to distinguish the more related parasite populations in the western GMS.
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- 2024
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19. Strategic Third-Party Product Entry and Mode Choice under Self-Operating Channels and Marketplace Competition: A Game-Theoretical Analysis.
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Biao Xu, Jinting Huang, Xiaodan Zhang, and Thomas Brashear Alejandro
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- 2024
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20. Multidisciplinary Investigations of Sustained Malaria Transmission in the Greater Mekong Subregion
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Cui, Liwang, Sattabongkot, Jetsumon, Aung, Pyae Linn, Brashear, Awtum, Cao, Yaming, Kaewkungwal, Jaranit, Khamsiriwatchara, Amnat, Kyaw, Myat Phone, Lawpoolsri, Saranath, Menezes, Lynette, Miao, Jun, Nguitragool, Wang, Parker, Daniel, Phuanukoonnon, Suparat, Roobsoong, Wanlapa, Siddiqui, Faiza, Soe, Myat Thu, Sriwichai, Patchara, Yang, Zhaoqing, Zhao, Yan, and Zhong, Daibin
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Rare Diseases ,Orphan Drug ,Vector-Borne Diseases ,Malaria ,Genetics ,Infectious Diseases ,Prevention ,Antimicrobial Resistance ,Aetiology ,2.2 Factors relating to the physical environment ,Infection ,Good Health and Well Being ,Animals ,Antimalarials ,Artemisinins ,Drug Resistance ,Humans ,Malaria ,Falciparum ,Mosquito Vectors ,Plasmodium falciparum ,Medical and Health Sciences ,Tropical Medicine - Abstract
In the course of malaria elimination in the Greater Mekong Subregion (GMS), malaria epidemiology has experienced drastic spatiotemporal changes with residual transmission concentrated along international borders and the rising predominance of Plasmodium vivax. The emergence of Plasmodium falciparum parasites resistant to artemisinin and partner drugs renders artemisinin-based combination therapies less effective while the potential spread of multidrug-resistant parasites elicits concern. Vector behavioral changes and insecticide resistance have reduced the effectiveness of core vector control measures. In recognition of these problems, the Southeast Asian International Center of Excellence for Malaria Research (ICEMR) has been conducting multidisciplinary research to determine how human migration, antimalarial drug resistance, vector behavior, and insecticide resistance sustain malaria transmission at international borders. These efforts allow us to comprehensively understand the ecology of border malaria transmission and develop population genomics tools to identify and track parasite introduction. In addition to employing in vivo, in vitro, and molecular approaches to monitor the emergence and spread of drug-resistant parasites, we also use genomic and genetic methods to reveal novel mechanisms of antimalarial drug resistance of parasites. We also use omics and population genetics approaches to study insecticide resistance in malaria vectors and identify changes in mosquito community structure, vectorial potential, and seasonal dynamics. Collectively, the scientific findings from the ICEMR research activities offer a systematic view of the factors sustaining residual malaria transmission and identify potential solutions to these problems to accelerate malaria elimination in the GMS.
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- 2022
21. Strain-dependent dynamic re-alignment of collagen fibers in skeletal muscle extracellular matrix
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Wohlgemuth, Ross P., Sriram, Sathvik, Henricson, Kyle E., Dinh, Daryl T., Brashear, Sarah E., and Smith, Lucas R.
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- 2024
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22. Hepatocyte FoxO1 Deficiency Protects From Liver Fibrosis via Reducing Inflammation and TGF-β1-mediated HSC ActivationSummary
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Quan Pan, Mingming Gao, DaMi Kim, Weiqi Ai, Wanbao Yang, Wen Jiang, Wesley Brashear, Yujiao Dai, Sha Li, Yuxiang Sun, Yajuan Qi, and Shaodong Guo
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FoxO1 ,Hepatic Stellate Cell ,Inflammation ,Liver Fibrosis ,TGF-β1 ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background & Aims: The O-class of the forkhead transcription factor FoxO1 is a crucial factor mediating insulin→PI3K→Akt signaling and governs diverse cellular processes. However, the role of hepatocyte FoxO1 in liver fibrosis has not been well-established. In his study, we investigated the role of hepatocyte FoxO1 in liver fibrosis and uncovered the underlying mechanisms. Methods: Liver fibrosis was established by carbon tetrachloride (CCL4) administration and compared between liver-specific deletion of FoxO1 deletion (F1KO) and control (CNTR) mice. Using genetic and bioinformatic strategies in vitro and in vivo, the role of hepatic FoxO1 in liver fibrosis and associated mechanisms was established. Results: Increased FoxO1 expression and FoxO1 signaling activation were observed in CCL4-induced fibrosis. Hepatic FoxO1 deletion largely attenuated CCL4-induced liver injury and fibrosis compared with CNTR mice. F1KO mice showed ameliorated CCL4-induced hepatic inflammation and decreased TGF-β1 mRNA and protein levels compared with those of CNTR mice. In primary hepatocytes, FoxO1 deficiency reduced TGF-β1 expression and secretion. Conditioned medium (CM) collected from wild-type hepatocytes treated with CCL4 activated human HSC cell line (LX-2); such effect was attenuated by FoxO1 deletion in primary hepatocytes or neutralization of TGF-β1 in the CM using TGF-β1 antibody. Hepatic FoxO1 overexpression in CNTR mice promoted CCL4-induced HSC activation; such effect was blocked in L-TGF-β1KO mice. Conclusions: Hepatic FoxO1 mediates CCL4-inducled liver fibrosis via upregulating hepatocyte TGF-β1 expression, stimulating hepatic inflammation and TGF-β1-mediated HSC activation. Hepatic FoxO1 may be a therapeutic target for prevention and treatment of liver fibrosis.
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- 2024
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23. Utilization of Services at Community-based Intimate Partner Violence Agencies: Associations with Sociodemographic and Victimization Factors
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PettyJohn, Morgan E., Baumler, Elizabeth, Backes, Bethany, Brashear, Barbie, Temple, Jeff R., and Wood, Leila
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- 2023
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24. Response of a CMS HGCAL silicon-pad electromagnetic calorimeter prototype to 20-300 GeV positrons
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Acar, B., Adamov, G., Adloff, C., Afanasiev, S., Akchurin, N., Akgün, B., Khan, F. Alam, Alhusseini, M., Alison, J., Alpana, A., Altopp, G., Alyari, M., An, S., Anagul, S., Andreev, I., Aspell, P., Atakisi, I. O., Bach, O., Baden, A., Bakas, G., Bakshi, A., Bannerjee, S., Bargassa, P., Barney, D., Beaudette, F., Beaujean, F., Becheva, E., Becker, A., Behera, P., Belloni, A., Bergauer, T., Besancon, M., Bhattacharya, S., Bhowmik, D., Bilki, B., Bloch, P., Bodek, A., Bonanomi, M., Bonnemaison, A., Bonomally, S., Borg, J., Bouyjou, F., Bower, N., Braga, D., Brashear, J., Brondolin, E., Bryant, P., Perraguin, A. Buchot, Bueghly, J., Burkle, B., Butler-Nalin, A., Bychkova, O., Callier, S., Calvet, D., Cao, X., Cappati, A., Caraway, B., Caregari, S., Cauchois, A., Ceard, L., Cekmecelioglu, Y. C., Cerci, S., Cerminara, G., Chadeeva, M., Charitonidis, N., Chatterjee, R., Chen, Y. M., Chen, Z., Cheng, H. J., Cheng, K. y., Chernichenko, S., Cheung, H., Chien, C. H., Choudhury, S., Čoko, D., Collura, G., Couderc, F., Danilov, M., Dannheim, D., Daoud, W., Dauncey, P., David, A., Davies, G., Davignon, O., Day, E., DeBarbaro, P., De Guio, F., de La Taille, C., De Silva, M., Debbins, P., Defranchis, M. M., Delagnes, E., Berrio, J. M. Deltoro, Derylo, G., de Almeida, P. G. Dias, Diaz, D., Dinaucourt, P., Dittmann, J., Dragicevic, M., Dugad, S., Dulucq, F., Dumanoglu, I., Dutta, V., Dutta, S., Dünser, M., Eckdahl, J., Edberg, T. K., Berni, M. El, Elias, F., Eno, S. C., Ershov, Yu., Everaerts, P., Extier, S., Fahim, F., Fallon, C., Fedi, G., Alves, B. A. Fontana Santos, Frahm, E., Franzoni, G., Freeman, J., French, T., Gandhi, P., Ganjour, S., Gao, X., Garcia-Bellido, A., Gastaldi, F., Gecse, Z., Geerebaert, Y., Gerwig, H., Gevin, O., Ghosh, S., Gilbert, A., Gilbert, W., Gill, K., Gingu, C., Gninenko, S., Golunov, A., Golutvin, I., Gonzalez, T., Gorbounov, N., Gouskos, L., Gray, A. B., Gu, Y., Guilloux, F., Guler, Y., Gülmez, E., Guo, J., Guler, E. Gurpinar, Hammer, M., Hassanshahi, H. M., Hatakeyama, K., Heering, A., Hegde, V., Heintz, U., Hinton, N., Hirschauer, J., Hoff, J., Hou, W. -S., Hou, X., Hua, H., Incandela, J., Irshad, A., Isik, C., Jain, S., Jheng, H. R., Joshi, U., Kachanov, V., Kalinin, A., Kalipoliti, L., Kaminskiy, A., Kapoor, A., Kara, O., Karneyeu, A., Kaya, M., Kaya, O., Topaksu, A. Kayis, Khukhunaishvili, A., Kiesler, J., Kilpatrick, M., Kim, S., Koetz, K., Kolberg, T., Köseyan, O. K., Kristić, A., Krohn, M., Krüger, K., Kulagin, N., Kulis, S., Kunori, S., Kuo, C. M., Kuryatkov, V., Kyre, S., Lai, Y., Lamichhane, K., Landsberg, G., Lange, C., Langford, J., Lee, M. Y., Levin, A., Li, A., Li, B., Li, J. H., Li, Y. y., Liao, H., Lincoln, D., Linssen, L., Lipton, R., Liu, Y., Lobanov, A., Lu, R. -S., Lupi, M., Lysova, I., Magnan, A. -M., Magniette, F., Mahjoub, A., Maier, A. A., Malakhov, A., Mallios, S., Mandjavize, I., Mannelli, M., Mans, J., Marchioro, A., Martelli, A., Martinez, G., Masterson, P., Meng, B., Mengke, T., Mestvirishvili, A., Mirza, I., Moccia, S., Mohanty, G. B., Monti, F., Morrissey, I., Murthy, S., Musić, J., Musienko, Y., Nabili, S., Nagar, A., Nguyen, M., Nikitenko, A., Noonan, D., Noy, M., Nurdan, K., Ochando, C., Odegard, B., Odell, N., Okawa, H., Onel, Y., Ortez, W., Ozegović, J., Ozkorucuklu, S., Paganis, E., Pagenkopf, D., Palladino, V., Pandey, S., Pantaleo, F., Papageorgakis, C., Papakrivopoulos, I., Parshook, J., Pastika, N., Paulini, M., Paulitsch, P., Peltola, T., Gomes, R. Pereira, Perkins, H., Petiot, P., Pierre-Emile, T., Pitters, F., Popova, E., Prosper, H., Prvan, M., Puljak, I., Qu, H., Quast, T., Quinn, R., Quinnan, M., Garcia, M. T. Ramos, Rao, K. K., Rapacz, K., Raux, L., Reichenbach, G., Reinecke, M., Revering, M., Roberts, A., Romanteau, T., Rose, A., Rovere, M., Roy, A., Rubinov, P., Rusack, R., Rusinov, V., Ryjov, V., Sahin, O. M., Salerno, R., Rodriguez, A. M. Sanchez, Saradhy, R., Sarkar, T., Sarkisla, M. A., Sauvan, J. B., Schmidt, I., Schmitt, M., Scott, E., Seez, C., Sefkow, F., Sharma, S., Shein, I., Shenai, A., Shukla, R., Sicking, E., Sieberer, P., Silva, P., Simsek, A. E., Sirois, Y., Smirnov, V., Sozbilir, U., Spencer, E., Steen, A., Strait, J., Strobbe, N., Su, J. W., Sukhov, E., Sun, L., Cerci, D. Sunar, Syal, C., Tali, B., Tan, C. L., Tao, J., Tastan, I., Tatli, T., Thaus, R., Tekten, S., Thienpont, D., Tiras, E., Titov, M., Tlisov, D., Tok, U. G., Troska, J., Tsai, L. -S., Tsamalaidze, Z., Tsipolitis, G., Tsirou, A., Tyurin, N., Undleeb, S., Urbanski, D., Ustinov, V., Uzunian, A., Van de Klundert, M., Varela, J., Velasco, M., Viazlo, O., Pinto, M. Vicente Barreto, Virdee, P. Vichoudis T., de Oliveira, R. Vizinho, Voelker, J., Voirin, E., Vojinovic, M., Wade, A., Wang, C., Wang, F., Wang, X., Wang, Z., Wayne, M., Webb, S. N., Whitbeck, A., White, D., Wickwire, R., Wilson, J. S., Winter, D., Wu, H. y., Wu, L., Nursanto, M. Wulansatiti, Yeh, C. H, Yohay, R., Yu, D., Yu, G. B., Yu, S. S., Yuan, C., Yumiceva, F., Yusuff, I., Zacharopoulou, A., Zamiatin, N., Zarubin, A., Zenz, S., Zghiche, A., Zhang, H., Zhang, J., Zhang, Y., and Zhang, Z.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
The Compact Muon Solenoid Collaboration is designing a new high-granularity endcap calorimeter, HGCAL, to be installed later this decade. As part of this development work, a prototype system was built, with an electromagnetic section consisting of 14 double-sided structures, providing 28 sampling layers. Each sampling layer has an hexagonal module, where a multipad large-area silicon sensor is glued between an electronics circuit board and a metal baseplate. The sensor pads of approximately 1 cm$^2$ are wire-bonded to the circuit board and are readout by custom integrated circuits. The prototype was extensively tested with beams at CERN's Super Proton Synchrotron in 2018. Based on the data collected with beams of positrons, with energies ranging from 20 to 300 GeV, measurements of the energy resolution and linearity, the position and angular resolutions, and the shower shapes are presented and compared to a detailed Geant4 simulation.
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- 2021
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25. Enhancing Discovery of Genetic Variants for Posttraumatic Stress Disorder Through Integration of Quantitative Phenotypes and Trauma Exposure Information
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Maihofer, Adam X, Choi, Karmel W, Coleman, Jonathan RI, Daskalakis, Nikolaos P, Denckla, Christy A, Ketema, Elizabeth, Morey, Rajendra A, Polimanti, Renato, Ratanatharathorn, Andrew, Torres, Katy, Wingo, Aliza P, Zai, Clement C, Aiello, Allison E, Almli, Lynn M, Amstadter, Ananda B, Andersen, Soren B, Andreassen, Ole A, Arbisi, Paul A, Ashley-Koch, Allison E, Austin, S Bryn, Avdibegović, Esmina, Borglum, Anders D, Babić, Dragan, Bækvad-Hansen, Marie, Baker, Dewleen G, Beckham, Jean C, Bierut, Laura J, Bisson, Jonathan I, Boks, Marco P, Bolger, Elizabeth A, Bradley, Bekh, Brashear, Meghan, Breen, Gerome, Bryant, Richard A, Bustamante, Angela C, Bybjerg-Grauholm, Jonas, Calabrese, Joseph R, Caldas-de-Almeida, José M, Chen, Chia-Yen, Dale, Anders M, Dalvie, Shareefa, Deckert, Jürgen, Delahanty, Douglas L, Dennis, Michelle F, Disner, Seth G, Domschke, Katharina, Duncan, Laramie E, Džubur Kulenović, Alma, Erbes, Christopher R, Evans, Alexandra, Farrer, Lindsay A, Feeny, Norah C, Flory, Janine D, Forbes, David, Franz, Carol E, Galea, Sandro, Garrett, Melanie E, Gautam, Aarti, Gelaye, Bizu, Gelernter, Joel, Geuze, Elbert, Gillespie, Charles F, Goçi, Aferdita, Gordon, Scott D, Guffanti, Guia, Hammamieh, Rasha, Hauser, Michael A, Heath, Andrew C, Hemmings, Sian MJ, Hougaard, David Michael, Jakovljević, Miro, Jett, Marti, Johnson, Eric Otto, Jones, Ian, Jovanovic, Tanja, Qin, Xue-Jun, Karstoft, Karen-Inge, Kaufman, Milissa L, Kessler, Ronald C, Khan, Alaptagin, Kimbrel, Nathan A, King, Anthony P, Koen, Nastassja, Kranzler, Henry R, Kremen, William S, Lawford, Bruce R, Lebois, Lauren AM, Lewis, Catrin, Liberzon, Israel, Linnstaedt, Sarah D, Logue, Mark W, Lori, Adriana, Lugonja, Božo, Luykx, Jurjen J, Lyons, Michael J, Maples-Keller, Jessica L, Marmar, Charles, Martin, Nicholas G, Maurer, Douglas, and Mavissakalian, Matig R
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Biological Sciences ,Genetics ,Anxiety Disorders ,Mental Health ,Brain Disorders ,Post-Traumatic Stress Disorder (PTSD) ,Prevention ,Human Genome ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Phenotype ,Polymorphism ,Single Nucleotide ,Stress Disorders ,Post-Traumatic ,GWAS ,Heritability ,PTSD ,PheWAS ,Trauma ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Biological sciences ,Biomedical and clinical sciences ,Psychology - Abstract
BackgroundPosttraumatic stress disorder (PTSD) is heritable and a potential consequence of exposure to traumatic stress. Evidence suggests that a quantitative approach to PTSD phenotype measurement and incorporation of lifetime trauma exposure (LTE) information could enhance the discovery power of PTSD genome-wide association studies (GWASs).MethodsA GWAS on PTSD symptoms was performed in 51 cohorts followed by a fixed-effects meta-analysis (N = 182,199 European ancestry participants). A GWAS of LTE burden was performed in the UK Biobank cohort (N = 132,988). Genetic correlations were evaluated with linkage disequilibrium score regression. Multivariate analysis was performed using Multi-Trait Analysis of GWAS. Functional mapping and annotation of leading loci was performed with FUMA. Replication was evaluated using the Million Veteran Program GWAS of PTSD total symptoms.ResultsGWASs of PTSD symptoms and LTE burden identified 5 and 6 independent genome-wide significant loci, respectively. There was a 72% genetic correlation between PTSD and LTE. PTSD and LTE showed largely similar patterns of genetic correlation with other traits, albeit with some distinctions. Adjusting PTSD for LTE reduced PTSD heritability by 31%. Multivariate analysis of PTSD and LTE increased the effective sample size of the PTSD GWAS by 20% and identified 4 additional loci. Four of these 9 PTSD loci were independently replicated in the Million Veteran Program.ConclusionsThrough using a quantitative trait measure of PTSD, we identified novel risk loci not previously identified using prior case-control analyses. PTSD and LTE have a high genetic overlap that can be leveraged to increase discovery power through multivariate methods.
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- 2022
26. Cultural Sensitivity in the Distance Learning Sphere
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Thomas, Nancy, primary, Brashear, Crystal A., additional, Mathews, Rebecca, additional, and Hickman, Donna, additional
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- 2023
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27. Building Relationship Through Discussion
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Brashear, Crystal Ann, primary
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- 2023
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28. The Use of Botulinum Toxin in Spasticity
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Pathak, Mayank S., primary and Brashear, Allison, additional
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- 2023
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29. Guest editorial: A blockchain-based approach to marketing in the sharing economy
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Tan, Teck Ming, Salo, Jari, Brashear Alejandro, Thomas G., Wei-Han Tan, Garry, Ooi, Keng-Boon, and Dwivedi, Yogesh K.
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- 2024
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30. Collagen cross-links scale with passive stiffness in dystrophic mouse muscles, but are not altered with administration of a lysyl oxidase inhibitor
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Brashear, Sarah E, Wohlgemuth, Ross P, Hu, Lin-Ya, Jbeily, Elias H, Christiansen, Blaine A, and Smith, Lucas R
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Medical Physiology ,Biomedical and Clinical Sciences ,Duchenne/ Becker Muscular Dystrophy ,Muscular Dystrophy ,Rare Diseases ,Pediatric ,Intellectual and Developmental Disabilities (IDD) ,Brain Disorders ,Musculoskeletal ,Animals ,Mice ,Aminopropionitrile ,Collagen ,Disease Models ,Animal ,Fibrosis ,Mice ,Inbred mdx ,Muscle ,Skeletal ,Muscular Dystrophy ,Duchenne ,Protein-Lysine 6-Oxidase ,General Science & Technology - Abstract
In Duchenne muscular dystrophy (DMD), a lack of functional dystrophin leads to myofiber instability and progressive muscle damage that results in fibrosis. While fibrosis is primarily characterized by an accumulation of extracellular matrix (ECM) components, there are changes in ECM architecture during fibrosis that relate more closely to functional muscle stiffness. One of these architectural changes in dystrophic muscle is collagen cross-linking, which has been shown to increase the passive muscle stiffness in models of fibrosis including the mdx mouse, a model of DMD. We tested whether the intraperitoneal injections of beta-aminopropionitrile (BAPN), an inhibitor of the cross-linking enzyme lysyl oxidase, would reduce collagen cross-linking and passive stiffness in young and adult mdx mice compared to saline-injected controls. We found no significant differences between BAPN treated and saline treated mice in collagen cross-linking and stiffness parameters. However, we observed that while collagen cross-linking and passive stiffness scaled positively in dystrophic muscles, collagen fiber alignment scaled with passive stiffness distinctly between muscles. We also observed that the dystrophic diaphragm showed the most dramatic fibrosis in terms of collagen content, cross-linking, and stiffness. Overall, we show that while BAPN was not effective at reducing collagen cross-linking, the positive association between collagen cross-linking and stiffness in dystrophic muscles still show cross-linking as a viable target for reducing passive muscle stiffness in DMD or other fibrotic muscle conditions.
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- 2022
31. Developing Synthetic Applications Benchmarks on Composable Cyberinfrastructure: A Study of Scaling Molecular Dynamics Applications on GPUs.
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Richard Lawrence, Dhruva K. Chakravorty, Zhenhua He, Francis Dang, Lisa M. Perez, Wesley A Brashear, and Honggao Liu
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- 2023
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32. Improving Access to Advanced Cyberinfrastructure Using Regional Computing Collaborations and People Networks: Recommendations from a National Workshop on Expanding Computing Using Collaborative Models.
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Dhruva Chakravorty, Sarah K. Janes, Wesley A Brashear, Sharon Broude Geva, Scotty Strachan, Forough Ghahramani, James V. Howell, Ralph Zottola, Lisa Perez, Honggao Liu, Amy Schultz, and Tim Cockerill
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- 2023
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33. Emerging Needs for Advanced Cyberinfrastructure at Under Resourced Institutions: Findings from a National Workshop on Expanding Computing Using Collaborative Models.
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Dhruva Chakravorty, Wesley A Brashear, Sharon Broude Geva, Sarah K. Janes, James V. Howell, Ralph Zottola, Lisa Perez, Scotty Strachan, Forough Ghahramani, Honggao Liu, Amy Schultz, Yuanqi Jing, Rajiv Malkan, and Tim Cockerill
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- 2023
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34. A Qualitative Study of Racial, Ethnic, and Cultural Experiences of Minority Clinicians During Agitation Care in the Emergency Department
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Agboola, Isaac K., Rosenberg, Alana, Robinson, Leah, Brashear, Taylor K., Eixenberger, Christopher, Shah, Dhruvil, Pavlo, Anthony J., Im, Dana D., Ray, Jessica M., Coupet, Edouard, Jr, and Wong, Ambrose H.
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- 2024
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35. Drivers of salespeople engagement: A justice perspective
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Rajabi, Reza, Brashear Alejandro, Thomas G., and Hashemi, Hossein
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- 2024
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36. Hepatocyte FoxO1 Deficiency Protects From Liver Fibrosis via Reducing Inflammation and TGF-β1-mediated HSC Activation
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Pan, Quan, Gao, Mingming, Kim, DaMi, Ai, Weiqi, Yang, Wanbao, Jiang, Wen, Brashear, Wesley, Dai, Yujiao, Li, Sha, Sun, Yuxiang, Qi, Yajuan, and Guo, Shaodong
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- 2024
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37. Construction and commissioning of CMS CE prototype silicon modules
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Acar, B., Adamov, G., Adloff, C., Afanasiev, S., Akchurin, N., Akgün, B., Alhusseini, M., Alison, J., Altopp, G., Alyari, M., An, S., Anagul, S., Andreev, I., Andrews, M., Aspell, P., Atakisi, I. A., Bach, O., Baden, A., Bakas, G., Bakshi, A., Bargassa, P., Barney, D., Becheva, E., Behera, P., Belloni, A., Bergauer, T., Besancon, M., Bhattacharya, S., Bhowmik, D., Bloch, P., Bodek, A., Bonanomi, M., Bonnemaison, A., Bonomally, S., Borg, J., Bouyjou, F., Braga, D., Brashear, J., Brondolin, E., Bryant, P., Bueghly, J., Bilki, B., Burkle, B., Butler-Nalin, A., Callier, S., Calvet, D., Cao, X., Caraway, B., Caregari, S., Ceard, L., Cekmecelioglu, Y. C., Cerminara, G., Charitonidis, N., Chatterjee, R., Chen, Y. M., Chen, Z., Cheng, K. y., Chernichenko, S., Cheung, H., Chien, C. H., Choudhury, S., Čoko, D., Collura, G., Couderc, F., Dumanoglu, I., Dannheim, D., Dauncey, P., David, A., Davies, G., Day, E., DeBarbaro, P., De Guio, F., de La Taille, C., De Silva, M., Debbins, P., Delagnes, E., Deltoro, J. M., Derylo, G., de Almeida, P. G. Dias, Diaz, D., Dinaucourt, P., Dittmann, J., Dragicevic, M., Dugad, S., Dutta, V., Dutta, S., Eckdahl, J., Edberg, T. K., Berni, M. El, Eno, S. C., Ershov, Yu., Everaerts, P., Extier, S., Fahim, F., Fallon, C., Alves, B. A. Fontana Santos, Frahm, E., Franzoni, G., Freeman, J., French, T., Guler, E. Gurpinar, Guler, Y., Gagnan, M., Gandhi, P., Ganjour, S., Garcia-Bellido, A., Gecse, Z., Geerebaert, Y., Gerwig, H., Gevin, O., Gilbert, W., Gilbert, A., Gill, K., Gingu, C., Gninenko, S., Golunov, A., Golutvin, I., Gonzalez, T., Gorbounov, N., Gouskos, L., Gu, Y., Guilloux, F., Gülmez, E., Hammer, M., Harilal, A., Hatakeyama, K., Heering, A., Hegde, V., Heintz, U., Hinger, V., Hinton, N., Hirschauer, J., Hoff, J., Hou, W. S., Isik, C., Incandela, J., Jain, S., Jheng, H. R., Joshi, U., Kara, O., Kachanov, V., Kalinin, A., Kameshwar, R., Kaminskiy, A., Karneyeu, A., Kaya, O., Kaya, M., Khukhunaishvili, A., Kim, S., Koetz, K., Kolberg, T., Kristić, A., Krohn, M., Krüger, K., Kulagin, N., Kulis, S., Kunori, S., Kuo, C. M., Kuryatkov, V., Kyre, S., Köseyan, O. K., Lai, Y., Lamichhane, K., Landsberg, G., Langford, J., Lee, M. Y., Levin, A., Li, A., Li, B., Li, J. -H., Liao, H., Lincoln, D., Linssen, L., Lipton, R., Liu, Y., Lobanov, A., Lu, R. S., Lysova, I., Magnan, A. M., Magniette, F., Maier, A. A., Malakhov, A., Mandjavize, I., Mannelli, M., Mans, J., Marchioro, A., Martelli, A., Masterson, P., Meng, B., Mengke, T., Mestvirishvili, A., Mirza, I., Moccia, S., Morrissey, I., Mudholkar, T., Musić, J., Musienko, I., Nabili, S., Nagar, A., Nikitenko, A., Noonan, D., Noy, M., Nurdan, K., Ochando, C., Odegard, B., Odell, N., Onel, Y., Ortez, W., Ozegović, J., Rodriguez, L. Pacheco, Paganis, E., Pagenkopf, D., Palladino, V., Pandey, S., Pantaleo, F., Papageorgakis, C., Papakrivopoulos, I., Parshook, J., Pastika, N., Paulini, M., Paulitsch, P., Peltola, T., Gomes, R. Pereira, Perkins, H., Petiot, P., Pitters, F., Prosper, H., Prvan, M., Puljak, I., Quast, T., Quinn, R., Quinnan, M., Rapacz, K., Raux, L., Reichenbach, G., Reinecke, M., Revering, M., Rodriguez, A., Romanteau, T., Rose, A., Rovere, M., Roy, A., Rubinov, P., Rusack, R., Simsek, A. E., Sozbilir, U., Sahin, O. M., Sanchez, A., Saradhy, R., Sarkar, T., Sarkisla, M. A., Sauvan, J. B., Schmidt, I., Schmitt, M., Scott, E., Seez, C., Sefkow, F., Sharma, S., Shein, I., Shenai, A., Shukla, R., Sicking, E., Sieberer, P., Sirois, Y., Smirnov, V., Spencer, E., Steen, A., Strait, J., Strebler, T., Strobbe, N., Su, J. W., Sukhov, E., Sun, L., Sun, M., Syal, C., Tali, B., Tok, U. G., Topaksu, A. Kayis, Tan, C. L., Tastan, I., Tatli, T., Thaus, R., Tekten, S., Thienpont, D., Pierre-Emile, T., Tiras, E., Titov, M., Tlisov, D., Troska, J., Tsamalaidze, Z., Tsipolitis, G., Tsirou, A., Tyurin, N., Undleeb, S., Urbanski, D., Ustinov, V., Uzunian, A., van de Klundert, M., Varela, J., Velasco, M., Pinto, M. Vicente Barreto, da Silva, P. M., Virdee, T., de Oliveira, R. Vizinho, Voelker, J., Voirin, E., Wang, Z., Wang, X., Wang, F., Wayne, M., Webb, S. N., Weinberg, M., Whitbeck, A., White, D., Wickwire, R., Wilson, J. S., Wu, H. Y., Wu, L., Yeh, C. H, Yohay, R., Yu, G. B., Yu, S. S., Yu, D., Yumiceva, F., Zacharopoulou, A., Zamiatin, N., Zarubin, A., Zenz, S., Zhang, H., and Zhang, J.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
As part of its HL-LHC upgrade program, the CMS Collaboration is developing a High Granularity Calorimeter (CE) to replace the existing endcap calorimeters. The CE is a sampling calorimeter with unprecedented transverse and longitudinal readout for both electromagnetic (CE-E) and hadronic (CE-H) compartments. The calorimeter will be built with $\sim$30,000 hexagonal silicon modules. Prototype modules have been constructed with 6-inch hexagonal silicon sensors with cell areas of 1.1~$cm^2$, and the SKIROC2-CMS readout ASIC. Beam tests of different sampling configurations were conducted with the prototype modules at DESY and CERN in 2017 and 2018. This paper describes the construction and commissioning of the CE calorimeter prototype, the silicon modules used in the construction, their basic performance, and the methods used for their calibration., Comment: 35 pages, submitted to JINST
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- 2020
38. The DAQ system of the 12,000 Channel CMS High Granularity Calorimeter Prototype
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Acar, B., Adamov, G., Adloff, C., Afanasiev, S., Akchurin, N., Akgün, B., Alhusseini, M., Alison, J., Altopp, G., Alyari, M., An, S., Anagul, S., Andreev, I., Andrews, M., Aspell, P., Atakisi, I. A., Bach, O., Baden, A., Bakas, G., Bakshi, A., Bargassa, P., Barney, D., Becheva, E., Behera, P., Belloni, A., Bergauer, T., Besancon, M., Bhattacharya, S., Bhowmik, D., Bloch, P., Bodek, A., Bonanomi, M., Bonnemaison, A., Bonomally, S., Borg, J., Bouyjou, F., Braga, D., Brashear, J., Brondolin, E., Bryant, P., Bueghly, J., Bilki, B., Burkle, B., Butler-Nalin, A., Callier, S., Calvet, D., Cao, X., Caraway, B., Caregari, S., Ceard, L., Cekmecelioglu, Y. C., Cerminara, G., Charitonidis, N., Chatterjee, R., Chen, Y. M., Chen, Z., Cheng, K. y., Chernichenko, S., Cheung, H., Chien, C. H., Choudhury, S., Čoko, D., Collura, G., Couderc, F., Dumanoglu, I., Dannheim, D., Dauncey, P., David, A., Davies, G., Day, E., DeBarbaro, P., De Guio, F., de La Taille, C., De Silva, M., Debbins, P., Delagnes, E., Deltoro, J. M., Derylo, G., de Almeida, P. G. Dias, Diaz, D., Dinaucourt, P., Dittmann, J., Dragicevic, M., Dugad, S., Dutta, V., Dutta, S., Eckdahl, J., Edberg, T. K., Berni, M. El, Eno, S. C., Ershov, Yu., Everaerts, P., Extier, S., Fahim, F., Fallon, C., Alves, B. A. Fontana Santos, Frahm, E., Franzoni, G., Freeman, J., French, T., Guler, E. Gurpinar, Guler, Y., Gagnan, M., Gandhi, P., Ganjour, S., Garcia-Bellido, A., Gecse, Z., Geerebaert, Y., Gerwig, H., Gevin, O., Gilbert, W., Gilbert, A., Gill, K., Gingu, C., Gninenko, S., Golunov, A., Golutvin, I., Gonzalez, T., Gorbounov, N., Gouskos, L., Gu, Y., Guilloux, F., Gülmez, E., Hammer, M., Harilal, A., Hatakeyama, K., Heering, A., Hegde, V., Heintz, U., Hinger, V., Hinton, N., Hirschauer, J., Hoff, J., Hou, W. S., Isik, C., Incandela, J., Jain, S., Jheng, H. R., Joshi, U., Kara, O., Kachanov, V., Kalinin, A., Kameshwar, R., Kaminskiy, A., Karneyeu, A., Kaya, O., Kaya, M., Khukhunaishvili, A., Kim, S., Koetz, K., Kolberg, T., Kristić, A., Krohn, M., Krüger, K., Kulagin, N., Kulis, S., Kunori, S., Kuo, C. M., Kuryatkov, V., Kyre, S., Köseyan, O. K., Lai, Y., Lamichhane, K., Landsberg, G., Langford, J., Lee, M. Y., Levin, A., Li, A., Li, B., Li, J. -H., Liao, H., Lincoln, D., Linssen, L., Lipton, R., Liu, Y., Lobanov, A., Lu, R. S., Lysova, I., Magnan, A. M., Magniette, F., Maier, A. A., Malakhov, A., Mandjavize, I., Mannelli, M., Mans, J., Marchioro, A., Martelli, A., Masterson, P., Meng, B., Mengke, T., Mestvirishvili, A., Mirza, I., Moccia, S., Morrissey, I., Mudholkar, T., Musić, J., Musienko, I., Nabili, S., Nagar, A., Nikitenko, A., Noonan, D., Noy, M., Nurdan, K., Ochando, C., Odegard, B., Odell, N., Onel, Y., Ortez, W., Ozegović, J., Rodriguez, L. Pacheco, Paganis, E., Pagenkopf, D., Palladino, V., Pandey, S., Pantaleo, F., Papageorgakis, C., Papakrivopoulos, I., Parshook, J., Pastika, N., Paulini, M., Paulitsch, P., Peltola, T., Gomes, R. Pereira, Perkins, H., Petiot, P., Pitters, F., Prosper, H., Prvan, M., Puljak, I., Quast, T., Quinn, R., Quinnan, M., Rapacz, K., Raux, L., Reichenbach, G., Reinecke, M., Revering, M., Rodriguez, A., Romanteau, T., Rose, A., Rovere, M., Roy, A., Rubinov, P., Rusack, R., Simsek, A. E., Sozbilir, U., Sahin, O. M., Sanchez, A., Saradhy, R., Sarkar, T., Sarkisla, M. A., Sauvan, J. B., Schmidt, I., Schmitt, M., Scott, E., Seez, C., Sefkow, F., Sharma, S., Shein, I., Shenai, A., Shukla, R., Sicking, E., Sieberer, P., Sirois, Y., Smirnov, V., Spencer, E., Steen, A., Strait, J., Strebler, T., Strobbe, N., Su, J. W., Sukhov, E., Sun, L., Sun, M., Syal, C., Tali, B., Tok, U. G., Topaksu, A. Kayis, Tan, C. L., Tastan, I., Tatli, T., Thaus, R., Tekten, S., Thienpont, D., Pierre-Emile, T., Tiras, E., Titov, M., Tlisov, D., Troska, J., Tsamalaidze, Z., Tsipolitis, G., Tsirou, A., Tyurin, N., Undleeb, S., Urbanski, D., Ustinov, V., Uzunian, A., van de Klundert, M., Varela, J., Velasco, M., Pinto, M. Vicente Barreto, da Silva, P. M., Virdee, T., de Oliveira, R. Vizinho, Voelker, J., Voirin, E., Wang, Z., Wang, X., Wang, F., Wayne, M., Webb, S. N., Weinberg, M., Whitbeck, A., White, D., Wickwire, R., Wilson, J. S., Wu, H. Y., Wu, L., Yeh, C. H, Yohay, R., Yu, G. B., Yu, S. S., Yu, D., Yumiceva, F., Zacharopoulou, A., Zamiatin, N., Zarubin, A., Zenz, S., Zhang, H., and Zhang, J.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
The CMS experiment at the CERN LHC will be upgraded to accommodate the 5-fold increase in the instantaneous luminosity expected at the High-Luminosity LHC (HL-LHC). Concomitant with this increase will be an increase in the number of interactions in each bunch crossing and a significant increase in the total ionising dose and fluence. One part of this upgrade is the replacement of the current endcap calorimeters with a high granularity sampling calorimeter equipped with silicon sensors, designed to manage the high collision rates. As part of the development of this calorimeter, a series of beam tests have been conducted with different sampling configurations using prototype segmented silicon detectors. In the most recent of these tests, conducted in late 2018 at the CERN SPS, the performance of a prototype calorimeter equipped with ${\approx}12,000\rm{~channels}$ of silicon sensors was studied with beams of high-energy electrons, pions and muons. This paper describes the custom-built scalable data acquisition system that was built with readily available FPGA mezzanines and low-cost Raspberry PI computers.
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- 2020
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39. The Discovery of Anti-Yo (Anti-PCA1) Antibody in Patients with Paraneoplastic Cerebellar Degeneration: Opening a Window into Autoimmune Neurological Disease
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Greenlee, John E. and Brashear, H. Robert
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- 2023
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- View/download PDF
40. Passive stiffness of fibrotic skeletal muscle in mdx mice relates to collagen architecture
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Brashear, Sarah E, Wohlgemuth, Ross P, Gonzalez, Gabriella, and Smith, Lucas R
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Medical Physiology ,Biomedical and Clinical Sciences ,Health Sciences ,Sports Science and Exercise ,Brain Disorders ,Rare Diseases ,Intellectual and Developmental Disabilities (IDD) ,Muscular Dystrophy ,Pediatric ,Musculoskeletal ,Animals ,Collagen ,Fibrosis ,Mice ,Mice ,Inbred C57BL ,Mice ,Inbred mdx ,Muscle Contraction ,Muscle ,Skeletal ,Muscular Dystrophy ,Animal ,Muscular Dystrophy ,Duchenne ,biomechanics ,collagen ,extracellular matrix ,fibrosis ,skeletal muscle ,Biological Sciences ,Medical and Health Sciences ,Physiology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Key pointsThe amount of fibrotic material in dystrophic mouse muscles relates to contractile function, but not passive function. Collagen fibres in skeletal muscle are associated with increased passive muscle stiffness in fibrotic muscles. The alignment of collagen is independently associated with passive stiffness in dystrophic skeletal muscles. These outcomes demonstrate that collagen architecture rather than collagen content should be a target of anti-fibrotic therapies to treat muscle stiffness.AbstractFibrosis is prominent in many skeletal muscle pathologies including dystrophies, neurological disorders, cachexia, chronic kidney disease, sarcopenia and metabolic disorders. Fibrosis in muscle is associated with decreased contractile forces and increased passive stiffness that limits joint mobility leading to contractures. However, the assumption that more fibrotic material is directly related to decreased function has not held true. Here we utilize novel measurement of extracellular matrix (ECM) and collagen architecture to relate ECM form to muscle function. We used mdx mice, a model for Duchenne muscular dystrophy that becomes fibrotic, and wildtype mice. In this model, extensor digitorum longus (EDL) muscle was significantly stiffer, but with similar total collagen, while the soleus muscle did not change stiffness, but increased collagen. The stiffness of the EDL was associated with increased collagen crosslinking as determined by collagen solubility. Measurement of ECM alignment using polarized light microscopy showed a robust relationship between stiffness and alignment for wildtype muscle that broke down in mdx muscles. Direct visualization of large collagen fibres with second harmonic generation imaging revealed their relative abundance in stiff muscles. Collagen fibre alignment was linked to stiffness across all muscles investigated and the most significant factor in a multiple linear regression-based model of muscle stiffness from ECM parameters. This work establishes novel characteristics of skeletal muscle ECM architecture and provides evidence for a mechanical function of collagen fibres in muscle. This finding suggests that anti-fibrotic strategies to enhance muscle function and excessive stiffness should target large collagen fibres and their alignment rather than total collagen.
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- 2021
41. Aligning academic medicine within the healthcare system: the APS-SPR virtual chat series
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Shanley, Thomas, Brashear, Allison, and Johnston, S. Claiborne
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- 2023
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42. A Three-Factor Benefits Framework for Understanding Consumer Preference for Scented Household Products: Psychological Interactions and Implications for Future Development
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Herz, Rachel S., Larsson, Maria, Trujillo, Rafael, Casola, Marisa C., Ahmed, Farah K., Lipe, Stacy, and Brashear, Morgan E.
- Abstract
Humans have deliberately scented their environment for purpose or pleasure for millennia. In the contemporary marketplace most consumers prefer and purchase scented versions of common household products. However, the drivers of this consumer preference have not been elucidated. To explain the attraction to scent in household products we propose a novel three-factor framework, comprising "functional benefits" (malodor mitigation, base odor coverage, freshening), "in-use experience benefits" (cleanliness, efficacy, pleasure), and "emotional benefits" (increasing in confidence, mood and nostalgia). To support this framework, we present new data from a market research survey on US consumer purchasing habits and attitudes towards home cleaning, laundry, and air freshening products. Further substantiating our framework, a focused review of olfactory psychological science illustrating the central role of scent in cognition, wellbeing, motivated behavior, and social behavior, as well as sensory marketing research highlights the benefits and implications of scent in consumer household products. Based on our three-factor framework we go on to discuss the potential for scent to influence health and raise issues to consider (such as potential negative responding to fragranced products). We conclude by showcasing new opportunities for future research in olfactory science and on scented household products that can advance the positive impacts of scent.
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- 2022
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43. Equilibrium blockchain adoption strategies for duopolistic competitive platforms with network effects
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Xu, Biao, Li, Hao, Zhang, Xiaodan, and Alejandro, Thomas Brashear
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- 2023
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44. A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism.
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Buckley, Reuben M, Davis, Brian W, Brashear, Wesley A, Farias, Fabiana HG, Kuroki, Kei, Graves, Tina, Hillier, LaDeana W, Kremitzki, Milinn, Li, Gang, Middleton, Rondo P, Minx, Patrick, Tomlinson, Chad, Lyons, Leslie A, Murphy, William J, and Warren, Wesley C
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Genetics ,Developmental Biology - Abstract
The domestic cat (Felis catus) numbers over 94 million in the USA alone, occupies households as a companion animal, and, like humans, suffers from cancer and common and rare diseases. However, genome-wide sequence variant information is limited for this species. To empower trait analyses, a new cat genome reference assembly was developed from PacBio long sequence reads that significantly improve sequence representation and assembly contiguity. The whole genome sequences of 54 domestic cats were aligned to the reference to identify single nucleotide variants (SNVs) and structural variants (SVs). Across all cats, 16 SNVs predicted to have deleterious impacts and in a singleton state were identified as high priority candidates for causative mutations. One candidate was a stop gain in the tumor suppressor FBXW7. The SNV is found in cats segregating for feline mediastinal lymphoma and is a candidate for inherited cancer susceptibility. SV analysis revealed a complex deletion coupled with a nearby potential duplication event that was shared privately across three unrelated cats with dwarfism and is found within a known dwarfism associated region on cat chromosome B1. This SV interrupted UDP-glucose 6-dehydrogenase (UGDH), a gene involved in the biosynthesis of glycosaminoglycans. Importantly, UGDH has not yet been associated with human dwarfism and should be screened in undiagnosed patients. The new high-quality cat genome reference and the compilation of sequence variation demonstrate the importance of these resources when searching for disease causative alleles in the domestic cat and for identification of feline biomedical models.
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- 2020
45. Efficacy and Safety of AbobotulinumtoxinA for the Treatment of Hemiparesis in Adults with Lower Limb Spasticity Previously Treated With Other Botulinum Toxins: A Secondary Analysis of a Randomized Controlled Trial
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Esquenazi, Alberto, Stoquart, Gaëtan, Hedera, Peter, Jacinto, Luis Jorge, Dimanico, Ugo, Constant‐Boyer, Francois, Brashear, Allison, Grandoulier, Anne‐Sophie, Vilain, Claire, Picaut, Philippe, and Gracies, Jean‐Michel
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Health Sciences ,Sports Science and Exercise ,Infectious Diseases ,Clinical Research ,Emerging Infectious Diseases ,Clinical Trials and Supportive Activities ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Adult ,Aged ,Botulinum Toxins ,Type A ,Double-Blind Method ,Female ,Humans ,Lower Extremity ,Male ,Middle Aged ,Muscle Spasticity ,Neuromuscular Agents ,Paresis ,Treatment Outcome ,Young Adult ,Clinical Sciences ,Clinical sciences ,Allied health and rehabilitation science - Abstract
ObjectiveTo examine the safety and efficacy of abobotulinumtoxinA in patients previously treated with botulinum toxin type A (BoNT-A) products other than abobotulinumtoxinA.DesignSecondary analysis from a phase 3, double-blind, single-cycle, randomized, placebo-controlled study.SettingFifty-two centers (11 countries).PatientsAdults with spastic hemiparesis were randomized (1:1:1) to receive abobotulinumtoxinA 1000 U, 1500 U, or placebo in their affected lower limb.Main outcome measurementsMuscle tone (6-point Modified Ashworth Scale [MAS], 0-5) for the gastrocnemius-soleus complex (GSC); proportion of MAS responders (≥1-point improvement); angle of catch (XV3 ) and spasticity grade (Y) for the GSC and soleus. Assessments were at weeks 1, 4, and 12 post-injection. Only descriptive statistics are presented.ResultsOf 388 patients, 84 received previous BoNT-A treatment (abobotulinumtoxinA 1000 U: N = 30; abobotulinumtoxinA 1500 U: N = 28; placebo: N = 26). At week 4, mean (SD) changes in MAS score in the GSC were - 0.8 (1.1), -0.9 (1.0), and - 0.4 (0.7) for abobotulinumtoxinA 1000 U, 1500 U, and placebo, respectively. Greater MAS responder rates were observed for abobotulinumtoxinA versus placebo at all time points. Mean (SD) changes (week 4) for abobotulinumtoxinA 1000 U, 1500 U, and placebo for XV3 were: GSC, 8° (21), 6° (10) and 1° (7); soleus, 11° (21), 5° (9) and 0° (8), respectively; for Y: GSC, -0.4 (0.7), -0.6 (0.8) and - 0.0 (0.9); soleus, -0.5 (0.7), -0.5 (0.7) and - 0.1 (0.6), respectively. Safety data and adverse events were consistent with the overall known profile of abobotulinumtoxinA.ConclusionsPatients previously treated with other BoNT-As showed improved muscle tone and spasticity at week 4 following abobotulinumtoxinA injection versus placebo. These findings suggest that abobotulinumtoxinA, at the recommended doses, has a good safety and efficacy profile in adults with lower limb spasticity who were previously treated with other BoNT-A products.
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- 2020
46. The extracellular matrix of dystrophic mouse diaphragm accounts for the majority of its passive stiffness and is resistant to collagenase digestion
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Wohlgemuth, Ross P., Feitzinger, Ryan M., Henricson, Kyle E., Dinh, Daryl T., Brashear, Sarah E., and Smith, Lucas R.
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- 2023
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47. Timing performance of the CMS High Granularity Calorimeter prototype
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Acar, B, Adamov, G, Adloff, C, Afanasiev, S, Akchurin, N, Akgun, B, Khan, F, Alhusseini, M, Alison, J, Alpana, A, Altopp, G, Alyari, M, An, S, Anagul, S, Andreev, I, Aspell, P, Atakisi, I, Bach, O, Baden, A, Bakas, G, Bakshi, A, Bannerjee, S, Bargassa, P, Barney, D, Beaudette, F, Beaujean, F, Becheva, E, Becker, A, Behera, P, Belloni, A, Bergauer, T, Besancon, M, Bhattacharya, S, Bhowmik, D, Bilki, B, Bloch, P, Bodek, A, Bonanomi, M, Bonnemaison, A, Bonomally, S, Borg, J, Bouyjou, F, Bower, N, Braga, D, Brashear, J, Brondolin, E, Bryant, P, Buchot Perraguin, A, Bueghly, J, Burkle, B, Butler-Nalin, A, Bychkova, O, Callier, S, Calvet, D, Cao, X, Cappati, A, Caraway, B, Caregari, S, Cauchois, A, Ceard, L, Cekmecelioglu, Y, Cerci, S, Cerminara, G, Chadeeva, M, Charitonidis, N, Chatterjee, R, Chen, Y, Chen, Z, Cheng, H, Cheng, K, Chernichenko, S, Cheung, H, Chien, C, Choudhury, S, Coko, D, Collura, G, Couderc, F, Danilov, M, Dannheim, D, Daoud, W, Dauncey, P, David, A, Davies, G, Davignon, O, Day, E, De Barbaro, P, De Guio, F, de La Taille, C, De Silva, M, Debbins, P, Defranchis, M, Delagnes, E, Deltoro Berrio, J, Derylo, G, Dias de Almeida, P, Diaz, D, Dinaucourt, P, Dittmann, J, Dragicevic, M, Dugad, S, Dulucq, F, Dumanoglu, I, Dutta, V, Dutta, S, Dunser, M, Eckdahl, J, Edberg, T, El Berni, M, Elias, F, Eno, S, Ershov, Y, Everaerts, P, Extier, S, Fahim, F, Fallon, C, Fedi, G, Fontana Santos Alves, B, Frahm, E, Franzoni, G, Freeman, J, French, T, Gandhi, P, Ganjour, S, Gao, X, Garcia-Bellido, A, Gastaldi, F, Gecse, Z, Geerebaert, Y, Gerwig, H, Gevin, O, Ghosh, S, Gilbert, A, Gilbert, W, Gill, K, Gingu, C, Gninenko, S, Golunov, A, Golutvin, I, Gonzalez, T, Gorbounov, N, Gouskos, L, Gray, A, Gu, Y, Guilloux, F, Guler, Y, Gulmez, E, Guo, J, Gurpinar Guler, E, Hammer, M, Hassanshahi, H, Hatakeyama, K, Heering, A, Hegde, V, Heintz, U, Hinton, N, Hirschauer, J, Hoff, J, Hou, W, Hou, X, Hua, H, Incandela, J, Irshad, A, Isik, C, Jain, S, Jheng, H, Joshi, U, Kachanov, V, Kalinin, A, Kalipoliti, L, Kaminskiy, A, Kapoor, A, Kara, O, Karneyeu, A, Kaya, M, Kaya, O, Kayis Topaksu, A, Khukhunaishvili, A, Kieseler, J, Kilpatrick, M, Kim, S, Koetz, K, Kolberg, T, Koseyan, O, Kristic, A, Krohn, M, Kruger, K, Kulagin, N, Kulis, S, Kunori, S, Kuo, C, Kuryatkov, V, Kyre, S, Lai, Y, Lamichhane, K, Landsberg, G, Lange, C, Langford, J, Lee, M, Levin, A, Li, A, Li, B, Li, J, Li, Y, Liao, H, Lincoln, D, Linssen, L, Lipton, R, Liu, Y, Lobanov, A, Lu, R, Lupi, M, Lysova, I, Magnan, A, Magniette, F, Mahjoub, A, Maier, A, Malakhov, A, Mallios, S, Mannelli, M, Mans, J, Marchioro, A, Martelli, A, Martinez, G, Masterson, P, Meng, B, Mengke, T, Mestvirishvili, A, Mirza, I, Moccia, S, Mohanty, G, Monti, F, Morrissey, I, Murthy, S, Music, J, Musienko, Y, Nabili, S, Nagar, A, Nguyen, M, Nikitenko, A, Noonan, D, Noy, M, Nurdan, K, Ochando, C, Odegard, B, Odell, N, Okawa, H, Onel, Y, Ortez, W, Ozegovic, J, Ozkorucuklu, S, Paganis, E, Pagenkopf, D, Palladino, V, Pandey, S, Pantaleo, F, Papageorgakis, C, Papakrivopoulos, I, Parshook, J, Pastika, N, Paulini, M, Paulitsch, P, Peltola, T, Pereira Gomes, R, Perkins, H, Petiot, P, Pierre-Emile, T, Pitters, F, Popova, E, Prosper, H, Prvan, M, Puljak, I, Qu, H, Quast, T, Quinn, R, Quinnan, M, Ramos Garcia, M, Rao, K, Rapacz, K, Raux, L, Reichenbach, G, Reinecke, M, Revering, M, Roberts, A, Romanteau, T, Rose, A, Rovere, M, Roy, A, Rubinov, P, Rusack, R, Rusinov, V, Ryjov, V, Sahin, M, Salerno, R, Sanchez Rodriguez, A, Saradhy, R, Sarkar, T, Sarkisla, M, Sauvan, J, Schmidt, I, Schmitt, M, Scott, E, Seez, C, Sefkow, F, Sharma, S, Shein, I, Shenai, A, Shukla, R, Sicking, E, Sieberer, P, Silva, P, Simsek, A, Sirois, Y, Smirnov, V, Sozbilir, U, Spencer, E, Steen, A, Strait, J, Strobbe, N, Su, J, Sukhov, E, Sun, L, Sunar Cerci, D, Syal, C, Tali, B, Tan, C, Tao, J, Tastan, I, Tatli, T, Thaus, R, Tekten, S, Thienpont, D, Tiras, E, Titov, M, Tlisov, D, Tok, U, Troska, J, Tsai, L, Tsamalaidze, Z, Tsipolitis, G, Tsirou, A, Tyurin, N, Undleeb, S, Urbanski, D, Ustinov, V, Uzunian, A, Van de Klundert, M, Varela, J, Velasco, M, Viazlo, O, Vicente Barreto Pinto, M, Vichoudis, P, Virdee, T, Vizinho de Oliveira, R, Voelker, J, Voirin, E, Vojinovic, M, Wade, A, Wang, C, Wang, F, Wang, X, Wang, Z, Wayne, M, Webb, S, Whitbeck, A, White, D, Wickwire, R, Wilson, J, Winter, D, Wu, H, Wu, L, Wulansatiti Nursanto, M, Yeh, C, Yohay, R, Yu, D, Yu, G, Yu, S, Yuan, C, Yumiceva, F, Yusuff, I, Zacharopoulou, A, Zamiatin, N, Zarubin, A, Zenz, S, Zghiche, A, Zhang, H, Zhang, J, Zhang, Y, Zhang, Z, Acar B., Adamov G., Adloff C., Afanasiev S., Akchurin N., Akgun B., Khan F., Alhusseini M., Alison J., Alpana A., Altopp G., Alyari M., An S., Anagul S., Andreev I., Aspell P., Atakisi I., Bach O., Baden A., Bakas G., Bakshi A., Bannerjee S., Bargassa P., Barney D., Beaudette F., Beaujean F., Becheva E., Becker A., Behera P., Belloni A., Bergauer T., Besancon M., Bhattacharya S., Bhowmik D., Bilki B., Bloch P., Bodek A., Bonanomi M., Bonnemaison A., Bonomally S., Borg J., Bouyjou F., Bower N., Braga D., Brashear J., Brondolin E., Bryant P., Buchot Perraguin A., Bueghly J., Burkle B., Butler-Nalin A., Bychkova O., Callier S., Calvet D., Cao X., Cappati A., Caraway B., Caregari S., Cauchois A., Ceard L., Cekmecelioglu Y., Cerci S., Cerminara G., Chadeeva M., Charitonidis N., Chatterjee R., Chen Y., Chen Z., Cheng H., Cheng K., Chernichenko S., Cheung H., Chien C., Choudhury S., Coko D., Collura G., Couderc F., Danilov M., Dannheim D., Daoud W., Dauncey P., David A., Davies G., Davignon O., Day E., De Barbaro P., De Guio F., de La Taille C., De Silva M., Debbins P., Defranchis M., Delagnes E., Deltoro Berrio J., Derylo G., Dias de Almeida P., Diaz D., Dinaucourt P., Dittmann J., Dragicevic M., Dugad S., Dulucq F., Dumanoglu I., Dutta V., Dutta S., Dunser M., Eckdahl J., Edberg T., El Berni M., Elias F., Eno S., Ershov Y., Everaerts P., Extier S., Fahim F., Fallon C., Fedi G., Fontana Santos Alves B., Frahm E., Franzoni G., Freeman J., French T., Gandhi P., Ganjour S., Gao X., Garcia-Bellido A., Gastaldi F., Gecse Z., Geerebaert Y., Gerwig H., Gevin O., Ghosh S., Gilbert A., Gilbert W., Gill K., Gingu C., Gninenko S., Golunov A., Golutvin I., Gonzalez T., Gorbounov N., Gouskos L., Gray A., Gu Y., Guilloux F., Guler Y., Gulmez E., Guo J., Gurpinar Guler E., Hammer M., Hassanshahi H., Hatakeyama K., Heering A., Hegde V., Heintz U., Hinton N., Hirschauer J., Hoff J., Hou W. -S., Hou X., Hua H., Incandela J., Irshad A., Isik C., Jain S., Jheng H., Joshi U., Kachanov V., Kalinin A., Kalipoliti L., Kaminskiy A., Kapoor A., Kara O., Karneyeu A., Kaya M., Kaya O., Kayis Topaksu A., Khukhunaishvili A., Kieseler J., Kilpatrick M., Kim S., Koetz K., Kolberg T., Koseyan O., Kristic A., Krohn M., Kruger K., Kulagin N., Kulis S., Kunori S., Kuo C., Kuryatkov V., Kyre S., Lai Y., Lamichhane K., Landsberg G., Lange C., Langford J., Lee M., Levin A., Li A., Li B., Li J., Li Y., Liao H., Lincoln D., Linssen L., Lipton R., Liu Y., Lobanov A., Lu R. -S., Lupi M., Lysova I., Magnan A. -M., Magniette F., Mahjoub A., Maier A., Malakhov A., Mallios S., Mannelli M., Mans J., Marchioro A., Martelli A., Martinez G., Masterson P., Meng B., Mengke T., Mestvirishvili A., Mirza I., Moccia S., Mohanty G., Monti F., Morrissey I., Murthy S., Music J., Musienko Y., Nabili S., Nagar A., Nguyen M., Nikitenko A., Noonan D., Noy M., Nurdan K., Ochando C., Odegard B., Odell N., Okawa H., Onel Y., Ortez W., Ozegovic J., Ozkorucuklu S., Paganis E., Pagenkopf D., Palladino V., Pandey S., Pantaleo F., Papageorgakis C., Papakrivopoulos I., Parshook J., Pastika N., Paulini M., Paulitsch P., Peltola T., Pereira Gomes R., Perkins H., Petiot P., Pierre-Emile T., Pitters F., Popova E., Prosper H., Prvan M., Puljak I., Qu H., Quast T., Quinn R., Quinnan M., Ramos Garcia M., Rao K., Rapacz K., Raux L., Reichenbach G., Reinecke M., Revering M., Roberts A., Romanteau T., Rose A., Rovere M., Roy A., Rubinov P., Rusack R., Rusinov V., Ryjov V., Sahin M., Salerno R., Sanchez Rodriguez A., Saradhy R., Sarkar T., Sarkisla M., Sauvan J., Schmidt I., Schmitt M., Scott E., Seez C., Sefkow F., Sharma S., Shein I., Shenai A., Shukla R., Sicking E., Sieberer P., Silva P., Simsek A., Sirois Y., Smirnov V., Sozbilir U., Spencer E., Steen A., Strait J., Strobbe N., Su J., Sukhov E., Sun L., Sunar Cerci D., Syal C., Tali B., Tan C., Tao J., Tastan I., Tatli T., Thaus R., Tekten S., Thienpont D., Tiras E., Titov M., Tlisov D., Tok U., Troska J., Tsai L. -S., Tsamalaidze Z., Tsipolitis G., Tsirou A., Tyurin N., Undleeb S., Urbanski D., Ustinov V., Uzunian A., Van de Klundert M., Varela J., Velasco M., Viazlo O., Vicente Barreto Pinto M., Vichoudis P., Virdee T., Vizinho de Oliveira R., Voelker J., Voirin E., Vojinovic M., Wade A., Wang C., Wang F., Wang X., Wang Z., Wayne M., Webb S., Whitbeck A., White D., Wickwire R., Wilson J., Winter D., Wu H., Wu L., Wulansatiti Nursanto M., Yeh C., Yohay R., Yu D., Yu G., Yu S., Yuan C., Yumiceva F., Yusuff I., Zacharopoulou A., Zamiatin N., Zarubin A., Zenz S., Zghiche A., Zhang H., Zhang J., Zhang Y., Zhang Z., Acar, B, Adamov, G, Adloff, C, Afanasiev, S, Akchurin, N, Akgun, B, Khan, F, Alhusseini, M, Alison, J, Alpana, A, Altopp, G, Alyari, M, An, S, Anagul, S, Andreev, I, Aspell, P, Atakisi, I, Bach, O, Baden, A, Bakas, G, Bakshi, A, Bannerjee, S, Bargassa, P, Barney, D, Beaudette, F, Beaujean, F, Becheva, E, Becker, A, Behera, P, Belloni, A, Bergauer, T, Besancon, M, Bhattacharya, S, Bhowmik, D, Bilki, B, Bloch, P, Bodek, A, Bonanomi, M, Bonnemaison, A, Bonomally, S, Borg, J, Bouyjou, F, Bower, N, Braga, D, Brashear, J, Brondolin, E, Bryant, P, Buchot Perraguin, A, Bueghly, J, Burkle, B, Butler-Nalin, A, Bychkova, O, Callier, S, Calvet, D, Cao, X, Cappati, A, Caraway, B, Caregari, S, Cauchois, A, Ceard, L, Cekmecelioglu, Y, Cerci, S, Cerminara, G, Chadeeva, M, Charitonidis, N, Chatterjee, R, Chen, Y, Chen, Z, Cheng, H, Cheng, K, Chernichenko, S, Cheung, H, Chien, C, Choudhury, S, Coko, D, Collura, G, Couderc, F, Danilov, M, Dannheim, D, Daoud, W, Dauncey, P, David, A, Davies, G, Davignon, O, Day, E, De Barbaro, P, De Guio, F, de La Taille, C, De Silva, M, Debbins, P, Defranchis, M, Delagnes, E, Deltoro Berrio, J, Derylo, G, Dias de Almeida, P, Diaz, D, Dinaucourt, P, Dittmann, J, Dragicevic, M, Dugad, S, Dulucq, F, Dumanoglu, I, Dutta, V, Dutta, S, Dunser, M, Eckdahl, J, Edberg, T, El Berni, M, Elias, F, Eno, S, Ershov, Y, Everaerts, P, Extier, S, Fahim, F, Fallon, C, Fedi, G, Fontana Santos Alves, B, Frahm, E, Franzoni, G, Freeman, J, French, T, Gandhi, P, Ganjour, S, Gao, X, Garcia-Bellido, A, Gastaldi, F, Gecse, Z, Geerebaert, Y, Gerwig, H, Gevin, O, Ghosh, S, Gilbert, A, Gilbert, W, Gill, K, Gingu, C, Gninenko, S, Golunov, A, Golutvin, I, Gonzalez, T, Gorbounov, N, Gouskos, L, Gray, A, Gu, Y, Guilloux, F, Guler, Y, Gulmez, E, Guo, J, Gurpinar Guler, E, Hammer, M, Hassanshahi, H, Hatakeyama, K, Heering, A, Hegde, V, Heintz, U, Hinton, N, Hirschauer, J, Hoff, J, Hou, W, Hou, X, Hua, H, Incandela, J, Irshad, A, Isik, C, Jain, S, Jheng, H, Joshi, U, Kachanov, V, Kalinin, A, Kalipoliti, L, Kaminskiy, A, Kapoor, A, Kara, O, Karneyeu, A, Kaya, M, Kaya, O, Kayis Topaksu, A, Khukhunaishvili, A, Kieseler, J, Kilpatrick, M, Kim, S, Koetz, K, Kolberg, T, Koseyan, O, Kristic, A, Krohn, M, Kruger, K, Kulagin, N, Kulis, S, Kunori, S, Kuo, C, Kuryatkov, V, Kyre, S, Lai, Y, Lamichhane, K, Landsberg, G, Lange, C, Langford, J, Lee, M, Levin, A, Li, A, Li, B, Li, J, Li, Y, Liao, H, Lincoln, D, Linssen, L, Lipton, R, Liu, Y, Lobanov, A, Lu, R, Lupi, M, Lysova, I, Magnan, A, Magniette, F, Mahjoub, A, Maier, A, Malakhov, A, Mallios, S, Mannelli, M, Mans, J, Marchioro, A, Martelli, A, Martinez, G, Masterson, P, Meng, B, Mengke, T, Mestvirishvili, A, Mirza, I, Moccia, S, Mohanty, G, Monti, F, Morrissey, I, Murthy, S, Music, J, Musienko, Y, Nabili, S, Nagar, A, Nguyen, M, Nikitenko, A, Noonan, D, Noy, M, Nurdan, K, Ochando, C, Odegard, B, Odell, N, Okawa, H, Onel, Y, Ortez, W, Ozegovic, J, Ozkorucuklu, S, Paganis, E, Pagenkopf, D, Palladino, V, Pandey, S, Pantaleo, F, Papageorgakis, C, Papakrivopoulos, I, Parshook, J, Pastika, N, Paulini, M, Paulitsch, P, Peltola, T, Pereira Gomes, R, Perkins, H, Petiot, P, Pierre-Emile, T, Pitters, F, Popova, E, Prosper, H, Prvan, M, Puljak, I, Qu, H, Quast, T, Quinn, R, Quinnan, M, Ramos Garcia, M, Rao, K, Rapacz, K, Raux, L, Reichenbach, G, Reinecke, M, Revering, M, Roberts, A, Romanteau, T, Rose, A, Rovere, M, Roy, A, Rubinov, P, Rusack, R, Rusinov, V, Ryjov, V, Sahin, M, Salerno, R, Sanchez Rodriguez, A, Saradhy, R, Sarkar, T, Sarkisla, M, Sauvan, J, Schmidt, I, Schmitt, M, Scott, E, Seez, C, Sefkow, F, Sharma, S, Shein, I, Shenai, A, Shukla, R, Sicking, E, Sieberer, P, Silva, P, Simsek, A, Sirois, Y, Smirnov, V, Sozbilir, U, Spencer, E, Steen, A, Strait, J, Strobbe, N, Su, J, Sukhov, E, Sun, L, Sunar Cerci, D, Syal, C, Tali, B, Tan, C, Tao, J, Tastan, I, Tatli, T, Thaus, R, Tekten, S, Thienpont, D, Tiras, E, Titov, M, Tlisov, D, Tok, U, Troska, J, Tsai, L, Tsamalaidze, Z, Tsipolitis, G, Tsirou, A, Tyurin, N, Undleeb, S, Urbanski, D, Ustinov, V, Uzunian, A, Van de Klundert, M, Varela, J, Velasco, M, Viazlo, O, Vicente Barreto Pinto, M, Vichoudis, P, Virdee, T, Vizinho de Oliveira, R, Voelker, J, Voirin, E, Vojinovic, M, Wade, A, Wang, C, Wang, F, Wang, X, Wang, Z, Wayne, M, Webb, S, Whitbeck, A, White, D, Wickwire, R, Wilson, J, Winter, D, Wu, H, Wu, L, Wulansatiti Nursanto, M, Yeh, C, Yohay, R, Yu, D, Yu, G, Yu, S, Yuan, C, Yumiceva, F, Yusuff, I, Zacharopoulou, A, Zamiatin, N, Zarubin, A, Zenz, S, Zghiche, A, Zhang, H, Zhang, J, Zhang, Y, Zhang, Z, Acar B., Adamov G., Adloff C., Afanasiev S., Akchurin N., Akgun B., Khan F., Alhusseini M., Alison J., Alpana A., Altopp G., Alyari M., An S., Anagul S., Andreev I., Aspell P., Atakisi I., Bach O., Baden A., Bakas G., Bakshi A., Bannerjee S., Bargassa P., Barney D., Beaudette F., Beaujean F., Becheva E., Becker A., Behera P., Belloni A., Bergauer T., Besancon M., Bhattacharya S., Bhowmik D., Bilki B., Bloch P., Bodek A., Bonanomi M., Bonnemaison A., Bonomally S., Borg J., Bouyjou F., Bower N., Braga D., Brashear J., Brondolin E., Bryant P., Buchot Perraguin A., Bueghly J., Burkle B., Butler-Nalin A., Bychkova O., Callier S., Calvet D., Cao X., Cappati A., Caraway B., Caregari S., Cauchois A., Ceard L., Cekmecelioglu Y., Cerci S., Cerminara G., Chadeeva M., Charitonidis N., Chatterjee R., Chen Y., Chen Z., Cheng H., Cheng K., Chernichenko S., Cheung H., Chien C., Choudhury S., Coko D., Collura G., Couderc F., Danilov M., Dannheim D., Daoud W., Dauncey P., David A., Davies G., Davignon O., Day E., De Barbaro P., De Guio F., de La Taille C., De Silva M., Debbins P., Defranchis M., Delagnes E., Deltoro Berrio J., Derylo G., Dias de Almeida P., Diaz D., Dinaucourt P., Dittmann J., Dragicevic M., Dugad S., Dulucq F., Dumanoglu I., Dutta V., Dutta S., Dunser M., Eckdahl J., Edberg T., El 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A., White D., Wickwire R., Wilson J., Winter D., Wu H., Wu L., Wulansatiti Nursanto M., Yeh C., Yohay R., Yu D., Yu G., Yu S., Yuan C., Yumiceva F., Yusuff I., Zacharopoulou A., Zamiatin N., Zarubin A., Zenz S., Zghiche A., Zhang H., Zhang J., Zhang Y., and Zhang Z.
- Abstract
This paper describes the experience with the calibration, reconstruction and evaluation of the timing capabilities of the CMS HGCAL prototype in the beam tests in 2018. The calibration procedure includes multiple steps and corrections ranging from tens of nanoseconds to a few hundred picoseconds. The timing performance is studied using signals from positron beam particles with energies between 20 GeV and 300 GeV. The performance is studied as a function of particle energy against an external timing reference as well as standalone by comparing the two different halves of the prototype. The timing resolution is found to be 60 ps for single-channel measurements and better than 20 ps for full showers at the highest energies, setting excellent perspectives for the HGCAL calorimeter performance at the HL-LHC.
- Published
- 2024
48. The Relationship of Attention-Deficit/Hyperactivity Disorder With Posttraumatic Stress Disorder: A Two-Sample Mendelian Randomization and Population-Based Sibling Comparison Study
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Maihofer, Adam X., Choi, Karmel W., Coleman, Jonathan R.I., Daskalakis, Nikolaos P., Denckla, Christy A., Ketema, Elizabeth, Morey, Rajendra A., Polimanti, Renato, Ratanatharathorn, Andrew, Torres, Katy, Wingo, Aliza P., Zai, Clement C., Aiello, Allison E., Almli, Lynn M., Amstadter, Ananda B., Andersen, Soren B., Andreassen, Ole A., Arbisi, Paul A., Ashley-Koch, Allison E., Austin, S. Bryn, Avdibegovic, Esmina, Borglum, Anders D., Babic, Dragan, Bækvad-Hansen, Marie, Baker, Dewleen G., Beckham, Jean C., Bierut, Laura J., Bisson, Jonathan I., Boks, Marco P., Bolger, Elizabeth A., Bradley, Bekh, Brashear, Meghan, Breen, Gerome, Bryant, Richard A., Bustamante, Angela C., Bybjerg-Grauholm, Jonas, Calabrese, Joseph R., Caldas-de-Almeida, Jose Miguel, Chen, Chia-Yen, Dale, Anders M., Dalvie, Shareefa, Deckert, Jürgen, Delahanty, Douglas L., Dennis, Michelle F., Disner, Seth G., Domschke, Katharina, Duncan, Laramie E., Kulenovic, Alma Dzubur, Erbes, Christopher R., Evans, Alexandra, Farrer, Lindsay A., Feeny, Norah C., Flory, Janine D., Forbes, David, Franz, Carol E., Galea, Sandro, Garrett, Melanie E., Gautam, Aarti, Gelaye, Bizu, Gelernter, Joel, Geuze, Elbert, Gillespie, Charles F., Uka, Aferdita Goci, Gordon, Scott D., Guffanti, Guia, Hammamieh, Rasha, Hauser, Michael A., Heath, Andrew C., Hemmings, Sian M.J., Hougaard, David Michael, Jakovljevic, Miro, Jett, Marti, Johnson, Eric Otto, Jones, Ian, Jovanovic, Tanja, Qin, Xue-Jun, Karstoft, Karen-Inge, Kaufman, Milissa L., Kessler, Ronald C., Khan, Alaptagin, Kimbrel, Nathan A., King, Anthony P., Koen, Nastassja, Kranzler, Henry R., Kremen, William S., Lawford, Bruce R., Lebois, Lauren A.M., Lewis, Catrin, Liberzon, Israel, Linnstaedt, Sarah D., Logue, Mark W., Lori, Adriana, Lugonja, Bozo, Luykx, Jurjen J., Lyons, Michael J., Maples-Keller, Jessica L., Marmar, Charles, Martin, Nicholas G., Maurer, Douglas, Mavissakalian, Matig R., McFarlane, Alexander, McGlinchey, Regina E., McLaughlin, Katie A., McLean, Samuel A., Mehta, Divya, Mellor, Rebecca, Michopoulos, Vasiliki, Milberg, William, Miller, Mark W., Morris, Charles Phillip, Mors, Ole, Mortensen, Preben Bo, Nelson, Elliot C., Nordentoft, Merete, Norman, Sonya B., O’Donnell, Meaghan, Orcutt, Holly K., Panizzon, Matthew S., Peters, Edward S., Peterson, Alan L., Peverill, Matthew, Pietrzak, Robert H., Polusny, Melissa A., Rice, John P., Risbrough, Victoria B., Roberts, Andrea L., Rothbaum, Alex O., Rothbaum, Barbara O., Roy-Byrne, Peter, Ruggiero, Kenneth J., Rung, Ariane, Rutten, Bart P.F., Saccone, Nancy L., Sanchez, Sixto E., Schijven, Dick, Seedat, Soraya, Seligowski, Antonia V., Seng, Julia S., Sheerin, Christina M., Silove, Derrick, Smith, Alicia K., Smoller, Jordan W., Sponheim, Scott R., Stein, Dan J., Stevens, Jennifer S., Teicher, Martin H., Thompson, Wesley K., Trapido, Edward, Uddin, Monica, Ursano, Robert J., Luella van den Heuvel, Leigh, Van Hooff, Miranda, Vermetten, Eric, Vinkers, Christiaan, Voisey, Joanne, Wang, Yunpeng, Wang, Zhewu, Werge, Thomas, Williams, Michelle A., Williamson, Douglas E., Winternitz, Sherry, Wolf, Christiane, Wolf, Erika J., Yehuda, Rachel, Young, Keith A., Young, Ross McD., Zhao, Hongyu, Zoellner, Lori A., Haas, Magali, Lasseter, Heather, Provost, Allison C., Salem, Rany M., Sebat, Jonathan, Shaffer, Richard, Wu, Tianying, Ripke, Stephan, Daly, Mark J., Ressler, Kerry J., Koenen, Karestan C., Stein, Murray B., Nievergelt, Caroline M., Wendt, Frank R., Garcia-Argibay, Miguel, Cabrera-Mendoza, Brenda, Valdimarsdóttir, Unnur A., Nivard, Michel G., Larsson, Henrik, Mattheisen, Manuel, and Meier, Sandra M.
- Published
- 2023
- Full Text
- View/download PDF
49. Temperature instability of a mutation at a multidomain junction in Na,K-ATPase isoform ATP1A3 (p.Arg756His) produces a fever-induced neurological syndrome
- Author
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Arystarkhova, Elena, Toustrup-Jensen, Mads S., Holm, Rikke, Ko, Jae-Kyun, Lee, Kyung Eun, Feschenko, Polina, Ozelius, Laurie J., Brashear, Allison, Vilsen, Bente, and Sweadner, Kathleen J.
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- 2023
- Full Text
- View/download PDF
50. Preliminary characterization of Plasmodium vivax sporozoite antigens as pre-erythrocytic vaccine candidates.
- Author
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Justin Nicholas, Sai Lata De, Pongsakorn Thawornpan, Awtum M Brashear, Surendra Kumar Kolli, Pradeep Annamalai Subramani, Samantha J Barnes, Liwang Cui, Patchanee Chootong, Francis Babila Ntumngia, and John H Adams
- Subjects
Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Plasmodium vivax pre-erythrocytic (PE) vaccine research has lagged far behind efforts to develop Plasmodium falciparum vaccines. There is a critical gap in our knowledge of PE antigen targets that can induce functionally inhibitory neutralizing antibody responses. To overcome this gap and guide the selection of potential PE vaccine candidates, we considered key characteristics such as surface exposure, essentiality to infectivity and liver stage development, expression as recombinant proteins, and functional immunogenicity. Selected P. vivax sporozoite antigens were surface sporozoite protein 3 (SSP3), sporozoite microneme protein essential for cell traversal (SPECT1), sporozoite surface protein essential for liver-stage development (SPELD), and M2 domain of MAEBL. Sequence analysis revealed little variation occurred in putative B-cell and T-cell epitopes of the PE candidates. Each antigen was tested for expression as refolded recombinant proteins using an established bacterial expression platform and only SPELD failed. The successfully expressed antigens were immunogenic in vaccinated laboratory mice and were positively reactive with serum antibodies of P. vivax-exposed residents living in an endemic region in Thailand. Vaccine immune antisera were tested for reactivity to native sporozoite proteins and for their potential vaccine efficacy using an in vitro inhibition of liver stage development assay in primary human hepatocytes quantified on day 6 post-infection by high content imaging analysis. The anti-PE sera produced significant inhibition of P. vivax sporozoite invasion and liver stage development. This report provides an initial characterization of potential new PE candidates for a future P. vivax vaccine.
- Published
- 2023
- Full Text
- View/download PDF
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