146 results on '"Bramkamp M"'
Search Results
2. Causes that influence the detachment rate after Descemet membrane endothelial keratoplasty
- Author
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Röck, T., Bramkamp, M., Bartz-Schmidt, K. U., Röck, D., and Yörük, E.
- Published
- 2015
- Full Text
- View/download PDF
3. Arzneimitteltherapie zur Primärprävention kardiovaskulärer Erkrankungen bei adipösen Patienten
- Author
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Bramlage, P., Bramkamp, M., Bramlage, C. P., and Kirch, W.
- Published
- 2006
- Full Text
- View/download PDF
4. Erratum to: Causes that influence the detachment rate after Descemet membrane endothelial keratoplasty
- Author
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Röck, T., Bramkamp, M., Bartz-Schmidt, K. U., Röck, D., and Yoeruek, E.
- Published
- 2015
- Full Text
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5. Pharmacoeconomics of anticoagulation therapy for stroke prevention in atrial fibrillation: a review
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SZUCS, T. D. and BRAMKAMP, M.
- Published
- 2006
6. Determinants of costs and the length of stay in acute coronary syndromes : a real life analysis of more than 10 000 patients
- Author
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Bramkamp, M, University of Zurich, and Bramkamp, M
- Subjects
3004 Pharmacology ,UZHDISS UZH Dissertations ,2736 Pharmacology (medical) ,610 Medicine & health ,10060 Epidemiology, Biostatistics and Prevention Institute (EBPI) ,2705 Cardiology and Cardiovascular Medicine - Published
- 2008
- Full Text
- View/download PDF
7. Kommentar zum Leserbrief zur Vorderkammer-Antibiose
- Author
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Röck, T., additional, Bramkamp, M., additional, Bartz-Schmidt, K.-U., additional, Mutlu, U., additional, Yörük, E., additional, Röck, D., additional, and Thaler, S., additional
- Published
- 2015
- Full Text
- View/download PDF
8. Factors that influence the suitability of human organ-cultured corneas
- Author
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Röck, T., primary, Hofmann, J., additional, Thaler, S., additional, Bramkamp, M., additional, Bartz-Schmidt, K. U., additional, Yoeruek, E., additional, and Röck, D., additional
- Published
- 2015
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9. Kosten-Nutzen-Effektivität von Clopidogrel bei akutem Koronarsyndrom: Langzeitbehandlung, sekundäre Prophylaxe, Koronarintervention
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Bramkamp, M, Szucs, T D, University of Zurich, and Szucs, T D
- Subjects
610 Medicine & health ,10060 Epidemiology, Biostatistics and Prevention Institute (EBPI) ,2705 Cardiology and Cardiovascular Medicine - Published
- 2008
10. Pharmacotherapy of acute coronary syndromes: medical economics with an emphasis on clopidogrel
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Bramkamp, M, Dedes, K J, Szucs, T D, University of Zurich, and Szucs, T D
- Subjects
3004 Pharmacology ,2736 Pharmacology (medical) ,610 Medicine & health ,10060 Epidemiology, Biostatistics and Prevention Institute (EBPI) ,2705 Cardiology and Cardiovascular Medicine - Published
- 2005
11. Paclitaxel: cost–effectiveness in ovarian cancer
- Author
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Dedes, K J, Bramkamp, M, Szucs, T D, University of Zurich, and Szucs, T D
- Subjects
2736 Pharmacology (medical) ,610 Medicine & health ,10060 Epidemiology, Biostatistics and Prevention Institute (EBPI) ,2719 Health Policy - Published
- 2005
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12. Reduktion der postoperativen Endophthalmitisrate durch intrakamerale Cerfuroximgabe: Ergebnisse aus 5 Jahren Erfahrungen an der Universitäts-Augenklinik Tübingen
- Author
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Röck, T., additional, Bramkamp, M., additional, Bartz-Schmidt, K.-U., additional, Mutlu, U., additional, Yörük, E., additional, Röck, D., additional, and Thaler, S., additional
- Published
- 2014
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13. Protein-Protein Interaction Domains of Bacillus subtilis DivIVA
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van Baarle, S., primary, Celik, I. N., additional, Kaval, K. G., additional, Bramkamp, M., additional, Hamoen, L. W., additional, and Halbedel, S., additional
- Published
- 2012
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14. Atraumatic fracture of proximal first phalanx
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Bramkamp, M., primary
- Published
- 2006
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15. THE SOLUTION STRUCTURE OF THE NUCLEOTIDE BINDING DOMAIN OF KDPB
- Author
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Haupt, M., primary, Bramkamp, M., additional, Coles, M., additional, Altendorf, K., additional, and Kessler, H., additional
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- 2004
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16. What's your call?
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Akhdari N, Amal S, Ettalbi S, Nzegwu MA, Okafor OC, Olusina D, Ekenze SO, Bramkamp M, and Schärer M
- Published
- 2006
17. Radiotherapy and the heart.
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Bramkamp M, Rock T, Schneermann M, Binggeli C, and Kucher N
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- 2007
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18. Another Brick in the Wall: the role of the actinobacterial cell wall in antibiotic resistance, phylogeny and development
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Aart, L.T. van der, Wezel, G.P. van, Hankemeier, T., Meijer, A.H., Klinkhamer, P.G.L., Bramkamp, M., Rigali, S., and Leiden University
- Subjects
Morphology ,Antibiotic resistance ,Cell wall ,fungi ,Genetics ,Peptidoglycan ,Streptomyces ,Phylogeny - Abstract
Streptomyces are multicellular, Gram-positive bacteria in the phylum of actinobacteria which produce a high amount of bioactive natural products of which the expression is tightly coordinated with the life cycle. This thesis shows the identification of S. roseifaciens, a novel species with an uncommon, verticillate spore morphology and a unique household of SsgA-like proteins. Analyses of the peptidoglycan composition show that S. coelicolor show a pattern of 3-3 cross-linking befitting a tip-growing organism and change in composition between vegetative mycelium and spores. Kitasatosporae carry meso-DAP in the peptidoglycan of vegetative mycelium and LL-DAP in the peptidoglycan of spores. In line with this difference, the peptidoglycan architecture of these two growth stages undergoes such radical changes that they would seem to be from different species. S. coelicolor is naturally vancomycin resistant, but the addition of D-alanine and disruption in a single gene increases vancomycin sensitivity by a thousandfold. A knockout mutant of the alanine racemase, alr, requires exogenous addition of D-alanine. The Alr crystal structure of S. coelicolor and the D-cycloserine producer S. lavendulae were compared as to look for possible mechanisms for D-cycloserine resistance.
- Published
- 2019
19. Whipple's disease.
- Author
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Williams OM, Nightingale AK, Hartley J, Bramkamp M, Ruggieri F, Schneemann M, Raoult D, Fenollar F, and Puéchal X
- Published
- 2007
20. Bacterial flotillins as destabilizers of phospholipid membranes.
- Author
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Álvarez-Mena A, Morvan E, Martinez D, Berbon M, Savietto Scholz A, Grélard A, Turpin S, Dufourc EJ, Bramkamp M, and Habenstein B
- Abstract
From archaea to mammals evolutionary conserved flotillins are scaffolding proteins, recognized for their nandomain-segregating activity. Flotillins form basket-like oligomeric architectures on the membrane, based on a conserved secondary structure composition of the monomeric subunits: a membrane-targeting region, an SPFH domain and a coiled-coil "flotillin" domain. In B. subtilis, the two flotillins FloT and FloA are present, localizing mainly in distinct nanodomains and executing multiple cellular functions. We here use deuterium and phosphorus solid-state NMR to monitor the effect of the different flotillins FloT and FloA and their structural components on model membranes. We find a clear disordering effect of FloT and FloA on the membranes reaching the carbon positions in the centre of the membrane. This effect is imposed by the hydrophobic region and the adjacent SPFH domain and, surprisingly, further supported by the membrane-distant flotillin domain. Biological implications of this disordering action are discussed., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Birgit Habenstein reports financial support was provided by French National Research Agency. Birgit Habenstein reports financial support was provided by Foundation of the House of Chemistry. Marc Bramkamp reports financial support from the Deutsche Forschungsgemeinschaft. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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21. An outer membrane porin-lipoprotein complex modulates elongasome movement to establish cell curvature in Rhodospirillum rubrum.
- Author
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Pöhl S, Giacomelli G, Meyer FM, Kleeberg V, Cohen EJ, Biboy J, Rosum J, Glatter T, Vollmer W, van Teeseling MCF, Heider J, Bramkamp M, and Thanbichler M
- Subjects
- Bacterial Outer Membrane Proteins metabolism, Bacterial Outer Membrane Proteins genetics, Porins metabolism, Porins genetics, Rhodospirillum rubrum metabolism, Lipoproteins metabolism
- Abstract
Curved cell shapes are widespread among bacteria and important for cellular motility, virulence and fitness. However, the underlying morphogenetic mechanisms are still incompletely understood. Here, we identify an outer-membrane protein complex that promotes cell curvature in the photosynthetic species Rhodospirillum rubrum. We show that the R. rubrum porins Por39 and Por41 form a helical ribbon-like structure at the outer curve of the cell that recruits the peptidoglycan-binding lipoprotein PapS, with PapS inactivation, porin delocalization or disruption of the porin-PapS interface resulting in cell straightening. We further demonstrate that porin-PapS assemblies act as molecular cages that entrap the cell elongation machinery, thus biasing cell growth towards the outer curve. These findings reveal a mechanistically distinct morphogenetic module mediating bacterial cell shape. Moreover, they uncover an unprecedented role of outer-membrane protein patterning in the spatial control of intracellular processes, adding an important facet to the repertoire of regulatory mechanisms in bacterial cell biology., (© 2024. The Author(s).)
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- 2024
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22. Satiety controls behavior in Hydra through an interplay of pre-enteric and central nervous system-like neuron populations.
- Author
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Giez C, Noack C, Sakib E, Hofacker LM, Repnik U, Bramkamp M, and Bosch TCG
- Subjects
- Animals, Behavior, Animal physiology, Satiety Response physiology, Hydra physiology, Neurons physiology, Enteric Nervous System physiology, Central Nervous System physiology
- Abstract
Hunger and satiety can have an influence on decision-making, sensory processing, and motor behavior by altering the internal state of the brain. This process necessitates the integration of peripheral sensory stimuli into the central nervous system. Here, we show how animals without a central nervous system such as the cnidarian Hydra measure and integrate satiety into neuronal circuits and which specific neuronal populations are involved. We demonstrate that this simple nervous system, previously referred to as diffuse, has an endodermal subpopulation (N4) similar to the enteric nervous system (feeding-associated behavior) and an ectodermal population (N3) that performs central nervous system-like functions (physiology/motor). This view of a supposedly simple nervous system could open an important window into the origin of more complex nervous systems., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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23. Cell wall synthesizing complexes in Mycobacteriales.
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Meyer FM and Bramkamp M
- Subjects
- Peptidoglycan metabolism, Mycobacterium tuberculosis metabolism, Mycobacterium tuberculosis genetics, Corynebacterium glutamicum metabolism, Corynebacterium glutamicum growth & development, Corynebacterium glutamicum genetics, Mycobacterium smegmatis metabolism, Mycobacterium smegmatis growth & development, Mycobacterium smegmatis genetics, Arabinose metabolism, Bacterial Proteins metabolism, Bacterial Proteins genetics, Cell Wall metabolism, Mycolic Acids metabolism, Galactans metabolism
- Abstract
Members of the order Mycobacteriales are distinguished by a characteristic diderm cell envelope, setting them apart from other Actinobacteria species. In addition to the conventional peptidoglycan cell wall, these organisms feature an extra polysaccharide polymer composed of arabinose and galactose, termed arabinogalactan. The nonreducing ends of arabinose are covalently linked to mycolic acids (MAs), forming the immobile inner leaflet of the highly hydrophobic MA membrane. The contiguous outer leaflet of the MA membrane comprises trehalose mycolates and various lipid species. Similar to all actinobacteria, Mycobacteriales exhibit apical growth, facilitated by a polar localized elongasome complex. A septal cell envelope synthesis machinery, the divisome, builds instead of the cell wall structures during cytokinesis. In recent years, a growing body of knowledge has emerged regarding the cell wall synthesizing complexes of Mycobacteriales., focusing particularly on three model species: Corynebacterium glutamicum, Mycobacterium smegmatis, and Mycobacterium tuberculosis., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
- Full Text
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24. Effects of benzothiazinone and ethambutol on the integrity of the corynebacterial cell envelope.
- Author
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Meyer FM, Repnik U, Karnaukhova E, Schubert K, and Bramkamp M
- Abstract
The mycomembrane (MM) is a mycolic acid layer covering the surface of Mycobacteria and related species. This group includes important pathogens such as Mycobacterium tuberculosis , Corynebacterium diphtheriae, but also the biotechnologically important strain Corynebacterium glutamicum . Biosynthesis of the MM is an attractive target for antibiotic intervention. The first line anti-tuberculosis drug ethambutol (EMB) and the new drug candidate, benzothiazinone 043 (BTZ) interfere with the synthesis of the arabinogalactan (AG), which is a structural scaffold for covalently attached mycolic acids that form the inner leaflet of the MM. We previously showed that C. glutamicum cells treated with a sublethal concentration of EMB lose the integrity of the MM. In this study we examined the effects of BTZ on the cell envelope. Our work shows that BTZ efficiently blocks the apical growth machinery, however effects in combinatorial treatment with β-lactam antibiotics are only additive, not synergistic. Transmission electron microscopy (TEM) analysis revealed a distinct middle layer in the septum of control cells considered to be the inner leaflet of the MM covalently attached to the AG. This layer was not detectable in the septa of BTZ or EMB treated cells. In addition, we observed that EMB treated cells have a thicker and less electron dense peptidoglycan (PG). While EMB and BTZ both effectively block elongation growth, BTZ also strongly reduces septal cell wall synthesis, slowing down growth effectively. This renders BTZ treated cells likely more tolerant to antibiotics that act on growing bacteria., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Author(s).)
- Published
- 2023
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25. Bacterial membrane dynamics: Compartmentalization and repair.
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Bramkamp M and Scheffers DJ
- Abstract
In every bacterial cell, the plasma membrane plays a key role in viability as it forms a selective barrier between the inside of the cell and its environment. This barrier function depends on the physical state of the lipid bilayer and the proteins embedded or associated with the bilayer. Over the past decade or so, it has become apparent that many membrane-organizing proteins and principles, which were described in eukaryote systems, are ubiquitous and play important roles in bacterial cells. In this minireview, we focus on the enigmatic roles of bacterial flotillins in membrane compartmentalization and bacterial dynamins and ESCRT-like systems in membrane repair and remodeling., (© 2023 The Authors. Molecular Microbiology published by John Wiley & Sons Ltd.)
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- 2023
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26. Four Novel Caudoviricetes Bacteriophages Isolated from Baltic Sea Water Infect Colonizers of Aurelia aurita .
- Author
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Stante M, Weiland-Bräuer N, Repnik U, Werner A, Bramkamp M, Chibani CM, and Schmitz RA
- Subjects
- Enterobacteriaceae, DNA, Bacteria genetics, Seawater, Genome, Viral, Bacteriophages, Pseudomonas Phages genetics
- Abstract
The moon jellyfish Aurelia aurita is associated with a highly diverse microbiota changing with provenance, tissue, and life stage. While the crucial relevance of bacteria to host fitness is well known, bacteriophages have often been neglected. Here, we aimed to isolate virulent phages targeting bacteria that are part of the A. aurita -associated microbiota. Four phages ( Pseudomonas phage BSwM KMM1, Citrobacter phages BSwM KMM2-BSwM KMM4) were isolated from the Baltic Sea water column and characterized. Phages KMM2/3/4 infected representatives of Citrobacter , Shigella , and Escherichia ( Enterobacteriaceae ), whereas KMM1 showed a remarkably broad host range, infecting Gram-negative Pseudomonas as well as Gram-positive Staphylococcus . All phages showed an up to 99% adsorption to host cells within 5 min, short latent periods (around 30 min), large burst sizes (mean of 128 pfu/cell), and high efficiency of plating (EOP > 0.5), demonstrating decent virulence, efficiency, and infectivity. Transmission electron microscopy and viral genome analysis revealed that all phages are novel species and belong to the class of Caudoviricetes harboring a tail and linear double-stranded DNA (formerly known as Siphovirus -like (KMM3) and Myovirus -like (KMM1/2/4) bacteriophages) with genome sizes between 50 and 138 kbp. In the future, these isolates will allow manipulation of the A. aurita -associated microbiota and provide new insights into phage impact on the multicellular host.
- Published
- 2023
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27. Bacillus subtilis, a Swiss Army Knife in Science and Biotechnology.
- Author
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Stülke J, Grüppen A, Bramkamp M, and Pelzer S
- Subjects
- Spores, Bacterial genetics, Bacillus subtilis metabolism, Biotechnology
- Abstract
Next to Escherichia coli, Bacillus subtilis is the most studied and best understood organism that also serves as a model for many important pathogens. Due to its ability to form heat-resistant spores that can germinate even after very long periods of time, B. subtilis has attracted much scientific interest. Another feature of B. subtilis is its genetic competence, a developmental state in which B. subtilis actively takes up exogenous DNA. This makes B. subtilis amenable to genetic manipulation and investigation. The bacterium was one of the first with a fully sequenced genome, and it has been subject to a wide variety of genome- and proteome-wide studies that give important insights into many aspects of the biology of B. subtilis. Due to its ability to secrete large amounts of proteins and to produce a wide range of commercially interesting compounds, B. subtilis has become a major workhorse in biotechnology. Here, we review the development of important aspects of the research on B. subtilis with a specific focus on its cell biology and biotechnological and practical applications from vitamin production to concrete healing. The intriguing complexity of the developmental programs of B. subtilis, paired with the availability of sophisticated tools for genetic manipulation, positions it at the leading edge for discovering new biological concepts and deepening our understanding of the organization of bacterial cells., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
28. The MksG nuclease is the executing part of the bacterial plasmid defense system MksBEFG.
- Author
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Weiß M, Giacomelli G, Assaya MB, Grundt F, Haouz A, Peng F, Petrella S, Wehenkel AM, and Bramkamp M
- Subjects
- DNA Topoisomerases, Type II genetics, Genome, Plasmids genetics, DNA Transposable Elements, Corynebacterium glutamicum genetics, Corynebacterium glutamicum virology
- Abstract
Cells are continuously facing the risk of taking up foreign DNA that can compromise genomic integrity. Therefore, bacteria are in a constant arms race with mobile genetic elements such as phages, transposons and plasmids. They have developed several active strategies against invading DNA molecules that can be seen as a bacterial 'innate immune system'. Here, we investigated the molecular arrangement of the Corynebacterium glutamicum MksBEFG complex, which is homologous to the MukBEF condensin system. We show here that MksG is a nuclease that degrades plasmid DNA. The crystal structure of MksG revealed a dimeric assembly through its C-terminal domain that is homologous to the TOPRIM domain of the topoisomerase II family of enzymes and contains the corresponding ion binding site essential for DNA cleavage in topoisomerases. The MksBEF subunits exhibit an ATPase cycle in vitro and we reason that this reaction cycle, in combination with the nuclease activity provided by MksG, allows for processive degradation of invading plasmids. Super-resolution localization microscopy revealed that the Mks system is spatially regulated via the polar scaffold protein DivIVA. Introduction of plasmids results in an increase in DNA bound MksG, indicating an activation of the system in vivo., (© The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2023
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29. Mycobacterial IHF is a highly dynamic nucleoid-associated protein that assists HupB in organizing chromatin.
- Author
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Hołówka J, Łebkowski T, Feddersen H, Giacomelli G, Drużka K, Makowski Ł, Trojanowski D, Broda N, Bramkamp M, and Zakrzewska-Czerwińska J
- Abstract
Nucleoid-associated proteins (NAPs) crucially contribute to organizing bacterial chromatin and regulating gene expression. Among the most highly expressed NAPs are the HU and integration host factor (IHF) proteins, whose functional homologues, HupB and mycobacterial integration host factor (mIHF), are found in mycobacteria. Despite their importance for the pathogenicity and/or survival of tubercle bacilli, the role of these proteins in mycobacterial chromosome organization remains unknown. Here, we used various approaches, including super-resolution microscopy, to perform a comprehensive analysis of the roles of HupB and mIHF in chromosome organization. We report that HupB is a structural agent that maintains chromosome integrity on a local scale, and that the lack of this protein alters chromosome morphology. In contrast, mIHF is a highly dynamic protein that binds DNA only transiently, exhibits susceptibility to the chromosomal DNA topology changes and whose depletion leads to the growth arrest of tubercle bacilli. Additionally, we have shown that depletion of Mycobacterium smegmatis integration host factor (msIHF) leads to chromosome shrinkage and replication inhibition., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Hołówka, Łebkowski, Feddersen, Giacomelli, Drużka, Makowski, Trojanowski, Broda, Bramkamp and Zakrzewska-Czerwińska.)
- Published
- 2023
- Full Text
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30. A multi-adenylate cyclase regulator at the flagellar tip controls African trypanosome transmission.
- Author
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Bachmaier S, Giacomelli G, Calvo-Alvarez E, Vieira LR, Van Den Abbeele J, Aristodemou A, Lorentzen E, Gould MK, Brennand A, Dupuy JW, Forné I, Imhof A, Bramkamp M, Salmon D, Rotureau B, and Boshart M
- Subjects
- Adenylyl Cyclases metabolism, Animals, Cyclic AMP, Trypanosoma, Trypanosoma brucei brucei metabolism, Tsetse Flies parasitology
- Abstract
Signaling from ciliary microdomains controls developmental processes in metazoans. Trypanosome transmission requires development and migration in the tsetse vector alimentary tract. Flagellar cAMP signaling has been linked to parasite social motility (SoMo) in vitro, yet uncovering control of directed migration in fly organs is challenging. Here we show that the composition of an adenylate cyclase (AC) complex in the flagellar tip microdomain is essential for tsetse salivary gland (SG) colonization and SoMo. Cyclic AMP response protein 3 (CARP3) binds and regulates multiple AC isoforms. CARP3 tip localization depends on the cytoskeletal protein FLAM8. Re-localization of CARP3 away from the tip microdomain is sufficient to abolish SoMo and fly SG colonization. Since intrinsic development is normal in carp3 and flam8 knock-out parasites, AC complex-mediated tip signaling specifically controls parasite migration and thereby transmission. Participation of several developmentally regulated receptor-type AC isoforms may indicate the complexity of the in vivo signals perceived., (© 2022. The Author(s).)
- Published
- 2022
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31. Bacteroides muris sp. nov. isolated from the cecum of wild-derived house mice.
- Author
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Fokt H, Unni R, Repnik U, Schmitz RA, Bramkamp M, Baines JF, and Unterweger D
- Subjects
- Animals, Bacterial Typing Techniques, Cecum microbiology, DNA, Bacterial chemistry, DNA, Bacterial genetics, Fatty Acids analysis, Mice, Phylogeny, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Bacteroides genetics, Gastropoda
- Abstract
Two bacterial strains, KH365_2
T and KH569_7, were isolated from the cecum contents of wild-derived house mice. The strains were characterized as Gram-negative, rod-shaped, strictly anaerobic, and non-motile. Phylogenetic analysis based on 16S rRNA gene sequences revealed that both strains were most closely related to Bacteroides uniformis ATCC 8492T . Whole genome sequences of KH365_2T and KH569_7 strains have a DNA G + C content of 46.02% and 46.03% mol, respectively. Most morphological and biochemical characteristics did not differ between the newly isolated strains and classified Bacteroides strains. However, the average nucleotide identity (ANI) and dDNA-DNA hybridization (dDDH) values clearly distinguished the two strains from described members of the genus Bacteroides. Here, we present the phylogeny, morphology, and physiology of a novel species of the genus Bacteroides and propose the name Bacteroides muris sp. nov., with KH365_2T (DSM 114231T = CCUG 76277T ) as type strain., (© 2022. The Author(s).)- Published
- 2022
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32. Genus-Specific Interactions of Bacterial Chromosome Segregation Machinery Are Critical for Their Function.
- Author
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Pióro M, Matusiak I, Gawek A, Łebkowski T, Jaroszek P, Bergé M, Böhm K, Armitage J, Viollier PH, Bramkamp M, and Jakimowicz D
- Abstract
Most bacteria use the ParABS system to segregate their newly replicated chromosomes. The two protein components of this system from various bacterial species share their biochemical properties: ParB is a CTPase that binds specific centromere-like parS sequences to assemble a nucleoprotein complex, while the ParA ATPase forms a dimer that binds DNA non-specifically and interacts with ParB complexes. The ParA-ParB interaction incites the movement of ParB complexes toward the opposite cell poles. However, apart from their function in chromosome segregation, both ParAB may engage in genus-specific interactions with other protein partners. One such example is the polar-growth controlling protein DivIVA in Actinomycetota, which binds ParA in Mycobacteria while interacts with ParB in Corynebacteria . Here, we used heterologous hosts to investigate whether the interactions between DivIVA and ParA or ParB are maintained across phylogenic classes. Specifically, we examined interactions of proteins from four bacterial species, two belonging to the Gram positive Actinomycetota phylum and two belonging to the Gram-negative Pseudomonadota. We show that while the interactions between ParA and ParB are preserved for closely related orthologs, the interactions with polarly localised protein partners are not conferred by orthologous ParABs. Moreover, we demonstrate that heterologous ParA cannot substitute for endogenous ParA, despite their high sequence similarity. Therefore, we conclude that ParA orthologs are fine-tuned to interact with their partners, especially their interactions with polarly localised proteins are adjusted to particular bacterial species demands., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Pióro, Matusiak, Gawek, Łebkowski, Jaroszek, Bergé, Böhm, Armitage, Viollier, Bramkamp and Jakimowicz.)
- Published
- 2022
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33. Fluidity is the way to life: lipid phase separation in bacterial membranes.
- Author
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Bramkamp M
- Subjects
- Animals, Cell Membrane metabolism, Lipids, Membranes, Bacteria, Membrane Fluidity
- Abstract
A hallmark of biological membranes is the dynamic localization of lipids and proteins. Lipids respond to temperature reduction below a critical point with phase separation, and poikilothermic animals and also bacteria adapt their lipid content to prevent gel phase formation in membranes. In a new study, Gohrbandt et al (2022) show that reduced membrane fluidity in bacterial cells causes reversible phase separation without membrane rupture in vivo, highlighting the physical robustness of biological membranes., (© 2022 The Author.)
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- 2022
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34. Subcellular Dynamics of a Conserved Bacterial Polar Scaffold Protein.
- Author
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Giacomelli G, Feddersen H, Peng F, Martins GB, Grafemeyer M, Meyer F, Mayer B, Graumann PL, and Bramkamp M
- Subjects
- Bacillus subtilis genetics, Cell Division, Chromosome Segregation, Bacterial Proteins metabolism, Cell Cycle Proteins genetics
- Abstract
In order to survive, bacterial cells rely on precise spatiotemporal organization and coordination of essential processes such as cell growth, chromosome segregation, and cell division. Given the general lack of organelles, most bacteria are forced to depend on alternative localization mechanisms, such as, for example, geometrical cues. DivIVA proteins are widely distributed in mainly Gram-positive bacteria and were shown to bind the membrane, typically in regions of strong negative curvature, such as the cell poles and division septa. Here, they have been shown to be involved in a multitude of processes: from apical cell growth and chromosome segregation in actinobacteria to sporulation and inhibition of division re-initiation in firmicutes. Structural analyses revealed that DivIVA proteins can form oligomeric assemblies that constitute a scaffold for recruitment of other proteins. However, it remained unclear whether interaction with partner proteins influences DivIVA dynamics. Using structured illumination microscopy (SIM), single-particle tracking (SPT) microscopy, and fluorescent recovery after photobleaching (FRAP) experiments, we show that DivIVA from Corynebacterium glutamicum is mobilized by its binding partner ParB. In contrast, we show that the interaction between Bacillus subtilis DivIVA and its partner protein MinJ reduces DivIVA mobility. Furthermore, we show that the loss of the rod-shape leads to an increase in DivIVA dynamics in both organisms. Taken together, our study reveals the modulation of the polar scaffold protein by protein interactors and cell morphology. We reason that this leads to a very simple, yet robust way for actinobacteria to maintain polar growth and their rod-shape. In B. subtilis , however, the DivIVA protein is tailored towards a more dynamic function that allows quick relocalization from poles to septa upon division.
- Published
- 2022
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35. CTP-controlled liquid-liquid phase separation of ParB.
- Author
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Babl L, Giacomelli G, Ramm B, Gelmroth AK, Bramkamp M, and Schwille P
- Subjects
- Bacteria metabolism, Bacterial Physiological Phenomena, Bacterial Proteins metabolism, Cell Division, Chromosome Segregation, Chromosomes, Bacterial, Corynebacterium glutamicum metabolism, DNA Primase genetics, DNA Primase isolation & purification, DNA, Bacterial, Phase Transition, Phylogeny, Cytidine Triphosphate chemistry, Cytidine Triphosphate metabolism, DNA Primase chemistry, DNA Primase metabolism
- Abstract
The ParABS system is supposed to be responsible for plasmid partitioning and chromosome segregation in bacteria. ParABS ensures a high degree of fidelity in inheritance by dividing the genetic material equally between daughter cells during cell division. However, the molecular mechanisms underlying the assembly of the partition complex, representing the core of the ParABS system, are still far from being understood. Here we demonstrate that the partition complex is formed via liquid-liquid phase separation. Assembly of the partition complex is initiated by the formation of oligomeric ParB species, which in turn are regulated by CTP-binding. Phase diagrams and in vivo analysis show how the partition complex can further be spatially regulated by parS. By investigating the phylogenetic variation in phase separation and its regulation by CTP, we find a high degree of evolutionary conservation among distantly related prokaryotes. These results advance the understanding of partition complex formation and regulation in general, by confirming and extending recently proposed models., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2022
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36. Successful Regression in Patients with Progressive Keratoconus by Corneal Crosslinking.
- Author
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Röck T, Konrad EM, Röck D, Bramkamp M, Blumenstock G, and Bartz-Schmidt KU
- Subjects
- Adolescent, Adult, Collagen therapeutic use, Cornea, Corneal Topography, Cross-Linking Reagents therapeutic use, Female, Humans, Male, Photosensitizing Agents therapeutic use, Retrospective Studies, Riboflavin therapeutic use, Ultraviolet Rays, Visual Acuity, Young Adult, Keratoconus diagnosis, Keratoconus drug therapy, Photochemotherapy
- Abstract
Background: Since 2019, corneal collagen crosslinking (CXL) is included in the catalog of procedures covered by statutory health insurance in Germany. CXL is an established ophthalmological procedure for the last 20 years. The aim of this investigation was the measurement of progression before and after CXL., Material Und Methods: 65 consecutive eyes with progressive keratoconus from 53 patients were included in the retrospective study, which were observed at the University Eye Hospital Tübingen at least two years before and at least two years after CXL. The time of observation took place from October 2009 until March 2018. Parameters of interest had been the best corrected visual acuity (BCVA) and the keratometric values from the elevation maps measured by a Scheimpflug camera., Results: 65 eyes of 53 patients had been documented. The study population included 46 (86.8%) male and 7 (13.2%) female subjects. The mean age was 24 ± 8 years. The averaged observation time between the primary consultation and CXL showed 25 ± 15 months. Preoperatively the mean BCVA pointed out in a significant increase (0.13 ± 0.17 [first visit] vs. 0.23 ± 0.22 [preOP], p < 0.0001) while the mean Kmax resulted in a statistically significant increase (46.34 ± 3.33 dpt [first visit] vs. 48.78 ± 4.17 dpt [preOP], p < 0.0001). The mean thinnest point of the cornea showed a significant decrease (490.48 ± 34.23 µm [first visit] vs. 468.62 ± 29.84 µm [preop], p < 0.0001). Postoperatively the mean BCVA resulted in a significant improvement at the 12th postoperative month in comparison to the preoperative measurement (0.23 ± 0.22 [preOP] vs. 0.16 ± 0.14 [12 months], p = 0.04 respectively 0.17 ± 0.17 [24 months], p = 0.0006). The mean Kmax demonstrated in the 12th postoperative month a significant reduction (48.78 ± 4.17 dpt [preOP] vs. 47.91 ± 3.41 dpt [12 months], p = 0.0009 respectively 48 ± 4.56 dpt [24 months], p = 0.0051). The mean thinnest point of the cornea indicated a decrease at the 12th postoperative month (468.62 ± 29.84 µm [preOP] vs. 459.82 ± 35.88 µm [12 months], p = 0.0078 respectively 453.47 ± 43.39 µm [24 months], p = 0.0227)., Conclusion: CXL is a successful procedure for the therapy of progressive keratoconus., Competing Interests: The authors declare that they have no conflict of interest./Die Autorinnen/Autoren geben an, dass kein Interessenkonflikt besteht., (Thieme. All rights reserved.)
- Published
- 2021
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37. An Stomatin, Prohibitin, Flotillin, and HflK/C-Domain Protein Required to Link the Phage-Shock Protein to the Membrane in Bacillus subtilis .
- Author
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Scholz AS, Baur SSM, Wolf D, and Bramkamp M
- Abstract
Membrane surveillance and repair is of utmost importance to maintain cellular integrity and allow cellular life. Several systems detect cell envelope stress caused by antimicrobial compounds and abiotic stresses such as solvents, pH-changes and temperature in bacteria. Proteins containing an Stomatin, Prohibitin, Flotillin, and HflK/C (SPFH)-domain, including bacterial flotillins have been shown to be involved in membrane protection and membrane fluidity regulation. Here, we characterize a bacterial SPFH-domain protein, YdjI that is part of a stress induced complex in Bacillus subtilis . We show that YdjI is required to localize the ESCRT-III homolog PspA to the membrane with the help of two membrane integral proteins, YdjG/H. In contrast to classical flotillins, YdjI resides in fluid membrane regions and does not enrich in detergent resistant membrane fractions. However, similarly to FloA and FloT from B. subtilis , deletion of YdjI decreases membrane fluidity. Our data reveal a hardwired connection between phage shock response and SPFH proteins., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Scholz, Baur, Wolf and Bramkamp.)
- Published
- 2021
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38. The CTPase activity of ParB determines the size and dynamics of prokaryotic DNA partition complexes.
- Author
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Osorio-Valeriano M, Altegoer F, Das CK, Steinchen W, Panis G, Connolley L, Giacomelli G, Feddersen H, Corrales-Guerrero L, Giammarinaro PI, Hanßmann J, Bramkamp M, Viollier PH, Murray S, Schäfer LV, Bange G, and Thanbichler M
- Subjects
- Bacterial Proteins genetics, Binding Sites, Catalytic Domain, Crystallography, X-Ray, DNA, Bacterial genetics, Gene Expression Regulation, Bacterial, Hydrolysis, Mutation, Myxococcus xanthus genetics, Protein Conformation, Structure-Activity Relationship, Substrate Specificity, Time Factors, Bacterial Proteins metabolism, Chromosome Segregation, Chromosomes, Bacterial, Cytidine Triphosphate metabolism, DNA, Bacterial metabolism, Myxococcus xanthus enzymology
- Abstract
ParB-like CTPases mediate the segregation of bacterial chromosomes and low-copy number plasmids. They act as DNA-sliding clamps that are loaded at parS motifs in the centromere of target DNA molecules and spread laterally to form large nucleoprotein complexes serving as docking points for the DNA segregation machinery. Here, we solve crystal structures of ParB in the pre- and post-hydrolysis state and illuminate the catalytic mechanism of nucleotide hydrolysis. Moreover, we identify conformational changes that underlie the CTP- and parS-dependent closure of ParB clamps. The study of CTPase-deficient ParB variants reveals that CTP hydrolysis serves to limit the sliding time of ParB clamps and thus drives the establishment of a well-defined ParB diffusion gradient across the centromere whose dynamics are critical for DNA segregation. These findings clarify the role of the ParB CTPase cycle in partition complex assembly and function and thus advance our understanding of this prototypic CTP-dependent molecular switch., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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39. Single-cell growth inference of Corynebacterium glutamicum reveals asymptotically linear growth.
- Author
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Messelink JJ, Meyer F, Bramkamp M, and Broedersz CP
- Subjects
- Cell Cycle, Corynebacterium glutamicum growth & development, Single-Cell Analysis
- Abstract
Regulation of growth and cell size is crucial for the optimization of bacterial cellular function. So far, single bacterial cells have been found to grow predominantly exponentially, which implies the need for tight regulation to maintain cell size homeostasis. Here, we characterize the growth behavior of the apically growing bacterium Corynebacterium glutamicum using a novel broadly applicable inference method for single-cell growth dynamics. Using this approach, we find that C. glutamicum exhibits asymptotically linear single-cell growth. To explain this growth mode, we model elongation as being rate-limited by the apical growth mechanism. Our model accurately reproduces the inferred cell growth dynamics and is validated with elongation measurements on a transglycosylase deficient ΔrodA mutant. Finally, with simulations we show that the distribution of cell lengths is narrower for linear than exponential growth, suggesting that this asymptotically linear growth mode can act as a substitute for tight division length and division symmetry regulation., Competing Interests: JM, FM, MB, CB No competing interests declared, (© 2021, Messelink et al.)
- Published
- 2021
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40. FtsZ induces membrane deformations via torsional stress upon GTP hydrolysis.
- Author
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Ramirez-Diaz DA, Merino-Salomón A, Meyer F, Heymann M, Rivas G, Bramkamp M, and Schwille P
- Subjects
- Biomechanical Phenomena, Cell Division physiology, Escherichia coli metabolism, Escherichia coli ultrastructure, Hydrolysis, Liposomes metabolism, Luminescent Proteins metabolism, Membranes metabolism, Models, Biological, Optical Tweezers, Recombinant Fusion Proteins metabolism, Torsion, Mechanical, Bacterial Proteins metabolism, Cytoskeletal Proteins metabolism, Guanosine Triphosphate metabolism
- Abstract
FtsZ is a key component in bacterial cell division, being the primary protein of the presumably contractile Z ring. In vivo and in vitro, it shows two distinctive features that could so far, however, not be mechanistically linked: self-organization into directionally treadmilling vortices on solid supported membranes, and shape deformation of flexible liposomes. In cells, circumferential treadmilling of FtsZ was shown to recruit septum-building enzymes, but an active force production remains elusive. To gain mechanistic understanding of FtsZ dependent membrane deformations and constriction, we design an in vitro assay based on soft lipid tubes pulled from FtsZ decorated giant lipid vesicles (GUVs) by optical tweezers. FtsZ filaments actively transform these tubes into spring-like structures, where GTPase activity promotes spring compression. Operating the optical tweezers in lateral vibration mode and assigning spring constants to FtsZ coated tubes, the directional forces that FtsZ-YFP-mts rings exert upon GTP hydrolysis can be estimated to be in the pN range. They are sufficient to induce membrane budding with constricting necks on both, giant vesicles and E.coli cells devoid of their cell walls. We hypothesize that these forces result from torsional stress in a GTPase activity dependent manner.
- Published
- 2021
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41. Dynamics of the Bacillus subtilis Min System.
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Feddersen H, Würthner L, Frey E, and Bramkamp M
- Subjects
- Bacillus subtilis genetics, Bacterial Proteins genetics, Cell Cycle Proteins genetics, Models, Theoretical, Bacillus subtilis physiology, Bacterial Proteins metabolism, Cell Cycle Proteins metabolism, Cell Division
- Abstract
Division site selection is a vital process to ensure generation of viable offspring. In many rod-shaped bacteria, a dynamic protein system, termed the Min system, acts as a central regulator of division site placement. The Min system is best studied in Escherichia coli, where it shows a remarkable oscillation from pole to pole with a time-averaged density minimum at midcell. Several components of the Min system are conserved in the Gram-positive model organism Bacillus subtilis However, in B. subtilis, it is commonly believed that the system forms a stationary bipolar gradient from the cell poles to midcell. Here, we show that the Min system of B. subtilis localizes dynamically to active sites of division, often organized in clusters. We provide physical modeling using measured diffusion constants that describe the observed enrichment of the Min system at the septum. Mathematical modeling suggests that the observed localization pattern of Min proteins corresponds to a dynamic equilibrium state. Our data provide evidence for the importance of ongoing septation for the Min dynamics, consistent with a major role of the Min system in controlling active division sites but not cell pole areas. IMPORTANCE The molecular mechanisms that help to place the division septum in bacteria is of fundamental importance to ensure cell proliferation and maintenance of cell shape and size. The Min protein system, found in many rod-shaped bacteria, is thought to play a major role in division site selection. It was assumed that there are strong differences in the functioning and in the dynamics of the Min system in E. coli and B. subtilis Most previous attempts to address Min protein dynamics in B. subtilis have been hampered by the use of overexpression constructs. Here, functional fusions to Min proteins have been constructed by allelic exchange and state-of-the-art imaging techniques allowed to unravel an unexpected fast dynamic behavior of the B. subtilis Min system. Our data show that the molecular mechanisms leading to Min protein dynamics are not fundamentally different in E. coli and B. subtilis ., (Copyright © 2021 Feddersen et al.)
- Published
- 2021
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42. A Bacterial Dynamin-Like Protein Confers a Novel Phage Resistance Strategy on the Population Level in Bacillus subtilis.
- Author
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Guo L, Sattler L, Shafqat S, Graumann PL, and Bramkamp M
- Subjects
- Cell Membrane metabolism, Membrane Fusion, Bacillus subtilis metabolism, Bacteriophages metabolism, Dynamins metabolism
- Abstract
Bacillus subtilis DynA is a member of the dynamin superfamily, involved in membrane remodeling processes. DynA was shown to catalyze full membrane fusion and it plays a role in membrane surveillance against antibiotics. We show here that DynA also provides a novel resistance mechanism against phage infection. Cells lacking DynA are efficiently lysed after phage infection and virus replication. DynA does not prevent phage infection and replication in individual cells, but significantly delays host cell lysis, thereby slowing down the release of phage progeny from the host cells. During the process, DynA forms large, almost immobile clusters on the cell membrane that seem to support membrane integrity. Single-molecule tracking revealed a shift of freely diffusive molecules within the cytosol toward extended, confined motion at the cell membrane following phage induction. Thus, the bacterial dynamins are the first anti-phage system reported to delay host cell lysis and the last line of defense of a multilayered antiviral defense. DynA is therefore providing protective effects on the population, but not on single cell level. IMPORTANCE Bacteria have to cope with myriads of phages in their natural environments. Consequently, they have evolved sophisticated systems to prevent phage infection or epidemic spreading of the infection in the population. We show here that a bacterial dynamin-like protein is involved in phage resistance. The Bacillus subtilis DynA protein delays lysis of infected bacteria and reduces spreading of the phage particles. Thus, the dynamin mediated protection is not at the level of the individual cell, but on the population level. The bacterial DynA is the last line of defense to reduce the deleterious effect of a phage infection in a bacterial community. Interestingly, dynamin-like proteins such as Mx proteins are also involved in antiviral activities in Eukaryotes. Thus, the interaction of dynamin-like proteins and viruses seem to be an evolutionary ancient process.
- Published
- 2021
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43. Lsr2, a nucleoid-associated protein influencing mycobacterial cell cycle.
- Author
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Kołodziej M, Trojanowski D, Bury K, Hołówka J, Matysik W, Kąkolewska H, Feddersen H, Giacomelli G, Konieczny I, Bramkamp M, and Zakrzewska-Czerwińska J
- Subjects
- Antigens, Bacterial genetics, Bacterial Proteins genetics, Intravital Microscopy, Protein Domains, Protein Multimerization, Time-Lapse Imaging, Antigens, Bacterial metabolism, Bacterial Proteins metabolism, Cell Cycle, DNA Replication, DNA, Bacterial biosynthesis, Mycobacterium smegmatis physiology
- Abstract
Nucleoid-associated proteins (NAPs) are responsible for maintaining highly organized and yet dynamic chromosome structure in bacteria. The genus Mycobacterium possesses a unique set of NAPs, including Lsr2, which is a DNA-bridging protein. Importantly, Lsr2 is essential for the M. tuberculosis during infection exhibiting pleiotropic activities including regulation of gene expression (mainly as a repressor). Here, we report that deletion of lsr2 gene profoundly impacts the cell morphology of M. smegmatis, which is a model organism for studying the cell biology of M. tuberculosis and other mycobacterial pathogens. Cells lacking Lsr2 are shorter, wider, and more rigid than the wild-type cells. Using time-lapse fluorescent microscopy, we showed that fluorescently tagged Lsr2 forms large and dynamic nucleoprotein complexes, and that the N-terminal oligomerization domain of Lsr2 is indispensable for the formation of nucleoprotein complexes in vivo. Moreover, lsr2 deletion exerts a significant effect on the replication time and replisome dynamics. Thus, we propose that the Lsr2 nucleoprotein complexes may contribute to maintaining the proper organization of the newly synthesized DNA and therefore influencing mycobacterial cell cycle.
- Published
- 2021
- Full Text
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44. Elongation factor P is required for EII Glc translation in Corynebacterium glutamicum due to an essential polyproline motif.
- Author
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Pinheiro B, Petrov DP, Guo L, Martins GB, Bramkamp M, and Jung K
- Subjects
- Bacterial Proteins metabolism, Biological Transport, Carbohydrate Metabolism, Corynebacterium glutamicum growth & development, Glucose metabolism, Peptide Elongation Factors physiology, Peptides metabolism, Phosphotransferases metabolism, Transcription Factors metabolism, Corynebacterium glutamicum metabolism, Peptide Elongation Factors metabolism, Phosphoenolpyruvate Sugar Phosphotransferase System metabolism
- Abstract
Translating ribosomes require elongation factor P (EF-P) to incorporate consecutive prolines (XPPX) into nascent peptide chains. The proteome of Corynebacterium glutamicum ATCC 13032 contains a total of 1,468 XPPX motifs, many of which are found in proteins involved in primary and secondary metabolism. We show here that synthesis of EII
Glc , the glucose-specific permease of the phosphoenolpyruvate (PEP): sugar phosphotransferase system (PTS) encoded by ptsG, is strongly dependent on EF-P, as an efp deletion mutant grows poorly on glucose as sole carbon source. The amount of EIIGlc is strongly reduced in this mutant, which consequently results in a lower rate of glucose uptake. Strikingly, the XPPX motif is essential for the activity of EIIGlc , and substitution of the prolines leads to inactivation of the protein. Finally, translation of GntR2, a transcriptional activator of ptsG, is also dependent on EF-P. However, its reduced amount in the efp mutant can be compensated for by other regulators. These results reveal for the first time a translational bottleneck involving production of the major glucose transporter EIIGlc , which has implications for future strain engineering strategies., (© 2020 The Authors. Molecular Microbiology published by John Wiley & Sons Ltd.)- Published
- 2021
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45. A bacterial cytolinker couples positioning of magnetic organelles to cell shape control.
- Author
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Pfeiffer D, Toro-Nahuelpan M, Awal RP, Müller FD, Bramkamp M, Plitzko JM, and Schüler D
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins ultrastructure, Cell Division, Cryoelectron Microscopy, Cytoskeletal Proteins genetics, Cytoskeletal Proteins ultrastructure, Cytoskeleton genetics, Cytoskeleton ultrastructure, Electron Microscope Tomography, Magnetosomes ultrastructure, Magnetospirillum metabolism, Magnetospirillum ultrastructure, Microscopy, Electron, Transmission, Bacterial Proteins metabolism, Cytoskeletal Proteins metabolism, Cytoskeleton metabolism, Magnetosomes metabolism, Magnetospirillum cytology
- Abstract
Magnetotactic bacteria maneuver within the geomagnetic field by means of intracellular magnetic organelles, magnetosomes, which are aligned into a chain and positioned at midcell by a dedicated magnetosome-specific cytoskeleton, the "magnetoskeleton." However, how magnetosome chain organization and resulting magnetotaxis is linked to cell shape has remained elusive. Here, we describe the cytoskeletal determinant CcfM (curvature-inducing coiled-coil filament interacting with the magnetoskeleton), which links the magnetoskeleton to cell morphology regulation in Magnetospirillum gryphiswaldense Membrane-anchored CcfM localizes in a filamentous pattern along regions of inner positive-cell curvature by its coiled-coil motifs, and independent of the magnetoskeleton. CcfM overexpression causes additional circumferential localization patterns, associated with a dramatic increase in cell curvature, and magnetosome chain mislocalization or complete chain disruption. In contrast, deletion of ccfM results in decreased cell curvature, impaired cell division, and predominant formation of shorter, doubled chains of magnetosomes. Pleiotropic effects of CcfM on magnetosome chain organization and cell morphology are supported by the finding that CcfM interacts with the magnetoskeleton-related MamY and the actin-like MamK via distinct motifs, and with the cell shape-related cytoskeleton via MreB. We further demonstrate that CcfM promotes motility and magnetic alignment in structured environments, and thus likely confers a selective advantage in natural habitats of magnetotactic bacteria, such as aquatic sediments. Overall, we unravel the function of a prokaryotic cytoskeletal constituent that is widespread in magnetic and nonmagnetic spirilla-shaped Alphaproteobacteria., Competing Interests: The authors declare no competing interest.
- Published
- 2020
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46. RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae.
- Author
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Peschek N, Herzog R, Singh PK, Sprenger M, Meyer F, Fröhlich KS, Schröger L, Bramkamp M, Drescher K, and Papenfort K
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Base Sequence, Biofilms growth & development, Gene Expression Regulation, Bacterial, Genes, Bacterial, Mutation genetics, RNA, Messenger genetics, RNA, Messenger metabolism, Repressor Proteins metabolism, Transcription, Genetic, Vibrio cholerae physiology, Drug Resistance, Microbial genetics, RNA, Bacterial genetics, Vibrio cholerae cytology, Vibrio cholerae genetics
- Abstract
Vibrio cholerae, the cause of cholera disease, exhibits a characteristic curved rod morphology, which promotes infectivity and motility in dense hydrogels. Periplasmic protein CrvA determines cell curvature in V. cholerae, yet the regulatory factors controlling CrvA are unknown. Here, we discover the VadR small RNA (sRNA) as a post-transcriptional inhibitor of the crvA mRNA. Mutation of vadR increases cell curvature, whereas overexpression has the inverse effect. We show that vadR transcription is activated by the VxrAB two-component system and triggered by cell-wall-targeting antibiotics. V. cholerae cells failing to repress crvA by VadR display decreased survival upon challenge with penicillin G indicating that cell shape maintenance by the sRNA is critical for antibiotic resistance. VadR also blocks the expression of various key biofilm genes and thereby inhibits biofilm formation in V. cholerae. Thus, VadR is an important regulator for synchronizing peptidoglycan integrity, cell shape, and biofilm formation in V. cholerae.
- Published
- 2020
- Full Text
- View/download PDF
47. Flotillin-mediated membrane fluidity controls peptidoglycan synthesis and MreB movement.
- Author
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Zielińska A, Savietto A, de Sousa Borges A, Martinez D, Berbon M, Roelofsen JR, Hartman AM, de Boer R, Van der Klei IJ, Hirsch AK, Habenstein B, Bramkamp M, and Scheffers DJ
- Subjects
- Bacillus subtilis physiology, Bacterial Proteins physiology, Membrane Fluidity physiology, Membrane Proteins metabolism, Peptidoglycan biosynthesis
- Abstract
The bacterial plasma membrane is an important cellular compartment. In recent years it has become obvious that protein complexes and lipids are not uniformly distributed within membranes. Current hypotheses suggest that flotillin proteins are required for the formation of complexes of membrane proteins including cell-wall synthetic proteins. We show here that bacterial flotillins are important factors for membrane fluidity homeostasis. Loss of flotillins leads to a decrease in membrane fluidity that in turn leads to alterations in MreB dynamics and, as a consequence, in peptidoglycan synthesis. These alterations are reverted when membrane fluidity is restored by a chemical fluidizer. In vitro, the addition of a flotillin increases membrane fluidity of liposomes. Our data support a model in which flotillins are required for direct control of membrane fluidity rather than for the formation of protein complexes via direct protein-protein interactions., Competing Interests: AZ, AS, Ad, DM, MB, JR, AH, Rd, IV, AH, BH, MB, DS No competing interests declared, (© 2020, Zielińska et al.)
- Published
- 2020
- Full Text
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48. Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum.
- Author
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Böhm K, Giacomelli G, Schmidt A, Imhof A, Koszul R, Marbouty M, and Bramkamp M
- Subjects
- Bacillus subtilis, Bacterial Proteins genetics, Bacterial Proteins metabolism, Centromere metabolism, Chromosome Segregation, Chromosomes, Bacterial genetics, DNA Primase genetics, DNA Primase metabolism, DNA, Bacterial, Nucleoproteins metabolism, Replication Origin, Adenosine Triphosphatases metabolism, Chromosome Structures chemistry, Chromosome Structures metabolism, Chromosomes, Bacterial chemistry, Chromosomes, Bacterial metabolism, Corynebacterium glutamicum metabolism, DNA-Binding Proteins metabolism, Multiprotein Complexes metabolism
- Abstract
Higher-order chromosome folding and segregation are tightly regulated in all domains of life. In bacteria, details on nucleoid organization regulatory mechanisms and function remain poorly characterized, especially in non-model species. Here, we investigate the role of DNA-partitioning protein ParB and SMC condensin complexes in the actinobacterium Corynebacterium glutamicum. Chromosome conformation capture reveals SMC-mediated long-range interactions around ten centromere-like parS sites clustered at the replication origin (oriC). At least one oriC-proximal parS site is necessary for reliable chromosome segregation. We use chromatin immunoprecipitation and photoactivated single-molecule localization microscopy to show the formation of distinct, parS-dependent ParB-nucleoprotein subclusters. We further show that SMC/ScpAB complexes, loaded via ParB at parS sites, mediate chromosomal inter-arm contacts (as previously shown in Bacillus subtilis). However, the MukBEF-like SMC complex MksBEFG does not contribute to chromosomal DNA-folding; instead, this complex is involved in plasmid maintenance and interacts with the polar oriC-tethering factor DivIVA. Our results complement current models of ParB-SMC/ScpAB crosstalk and show that some condensin complexes evolved functions that are apparently uncoupled from chromosome folding.
- Published
- 2020
- Full Text
- View/download PDF
49. Clinical Management of Squamous Cell Carcinoma of the Conjunctiva.
- Author
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Röck T, Bartz-Schmidt KU, Bramkamp M, Milla J, Bösmüller HC, and Röck D
- Subjects
- Adult, Ambulatory Surgical Procedures, Female, Humans, Ophthalmic Solutions therapeutic use, Treatment Outcome, Antibiotics, Antineoplastic therapeutic use, Carcinoma, Squamous Cell drug therapy, Carcinoma, Squamous Cell surgery, Conjunctiva surgery, Conjunctival Neoplasms drug therapy, Conjunctival Neoplasms surgery, Mitomycin therapeutic use
- Abstract
BACKGROUND Conjunctival squamous cell carcinoma is the most common non-pigmented malignancy of the ocular surface. This report illustrates the clinical management of squamous cell carcinoma of the conjunctiva. CASE REPORT A 33-year-old female was referred to our eye hospital with a tumorous lesion on the nasal bulbar conjunctiva of the right eye. A topical therapy with antibiotic and corticosteroid eye drops did not change the lesion. The conjunctival tumor was widely resected. The histopathological diagnosis suggested a squamous cell carcinoma. After resection, a treatment with topical mitomycin C (MMC) 0.02% eye drops were started 4 times daily for 14 days. Two cycles of treatment were done with a 2-week interval during which only artificial tears eye drops were administered. At the 12-month follow-up, there was no sign of recurrence. CONCLUSIONS This case illustrates the effective and successful clinical management of squamous cell carcinoma of the conjunctiva with excision and postoperative treatment with MMC 0.02% eye drops.
- Published
- 2020
- Full Text
- View/download PDF
50. Journal Club.
- Author
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Commichau FM, Anstatt J, Krappmann S, Stegmann E, Banhart S, Papenfort K, Brunke S, Hube B, Bramkamp M, Herbert M, Sander J, Mueller JW, Wagner M, and Daus ML
- Published
- 2020
- Full Text
- View/download PDF
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