1. Binuclear [2Fe-2S] clusters in the Escherichia coli SoxR protein and role of the metal centers in transcription
- Author
-
Bradley Tm, Bruce Demple, Bollinger Jm, Elena Hidalgo, and Christopher T. Walsh
- Subjects
Iron-Sulfur Proteins ,Transcription, Genetic ,Iron ,Molecular Sequence Data ,medicine.disease_cause ,Biochemistry ,Dithiothreitol ,Abortive initiation ,chemistry.chemical_compound ,Bacterial Proteins ,Transcription (biology) ,RNA polymerase ,medicine ,Escherichia coli ,Sulfhydryl Compounds ,Molecular Biology ,DNA Primers ,Base Sequence ,Chemistry ,DNA, Superhelical ,Electron Spin Resonance Spectroscopy ,Promoter ,Cell Biology ,Templates, Genetic ,Footprinting ,SOXS ,Oxidative Stress ,Biophysics ,Copper ,Phenanthrolines ,Transcription Factors - Abstract
SoxR protein of Escherichia coli is activated by superoxide-generating agents or nitric oxide as a powerful transcription activator of the soxS gene, whose product activates approximately 10 other promoters. SoxR contains non-heme iron essential for abortive initiation of transcription in vitro. Here we show that this metal dependence extends to full-length transcription in vitro. In the presence of E. coli sigma 70 RNA polymerase, iron-containing SoxR mediates open complex formation at the soxS promoter, as determined using footprinting with Cu-5-phenyl-1,10-phenanthroline. We investigated the nature of the SoxR iron center by chemical analyses and electron paramagnetic resonance spectroscopy. Dithionite-reduced Fe-SoxR exhibited an almost axial paramagnetic signature with g values of 2.01 and 1.93 observable up to 100 K. These features, together with quantitation of spin, iron, and S2-, and hydrodynamic evidence that SoxR is a homodimer in solution, indicate that (SoxR)2 contains two [2Fe-2S] clusters. Treatment of Fe-SoxR with high concentrations of dithiothreitol caused subtle changes in the visible absorption spectrum and blocked transcriptional activity without generating reduced [2Fe-2S] centers, but was also associated with the loss of iron from the protein. However, lowering the thiol concentration by dilution allowed spontaneous regeneration of active Fe-SoxR.
- Published
- 1995