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Pangolins are some of the most overexploited but least studied mammals. The giant pangolin Smutsia gigantea is the largest of the eight pangolin species, measuring up to 180 cm in length and weighing up to 40 kg. It is a nocturnal, solitary species that occurs at low densities and little is known regarding its biology and ecology. It is distributed widely across the rainforests and forest savannah mosaics of equatorial Africa but its exact range extent is unknown. Apart from a single record in Kenya predating 1971, the eastern limit of its range was thought only to extend to central Uganda and western Tanzania. Here we present three spatially separate records confirming the presence of this species in Kenyan Afromontane forests. The three records are c. 120 km apart and c. 500 km east of the nearest confirmed giant pangolin population in Uganda. These records represent a significant range extension for the species and highlight the biodiversity and conservation importance of the Afromontane forests of western Kenya.

The Ngorongoro Conservation Area (NCA) is a protected area and UNESCO World Heritage Site and part of the Serengeti‐Ngorongoro Biosphere reserve in northern Tanzania. It is famous for its large volcanic caldera, unique cultural heritage, early hominid fossils and significant wildlife populations. NCA has been managed as a multiple land‐use area since 1959, a designation intended to foster a harmonious coexistence between indigenous residents and wildlife (Goldstein, 2004).

This paper presents a microfluidic device capable of performing genetic analysis on dung samples to identify White Rhinoceros (Ceratotherium simum). The development of a microfluidic device, which can be used in the field, offers a portable and cost‐effective solution for DNA analysis and species identification to aid conservation efforts. Optimization of the DNA extraction processes produced equivalent yields compared to conventional kit‐based methods within just 5 minutes. The use of a color‐changing loop‐mediated isothermal amplification reaction for simultaneous detection of the cytochrome B sequence of C. simum enabled positive results to be obtained within as little as 30 minutes. Field testing was performed at Knowsley Safari to demonstrate real‐world applicability of the microfluidic device for testing of biological samples., This paper presents a microfluidic device capable of performing genetic analysis on dung samples to identify White Rhinoceros (Ceratotherium simum), which offers a portable and cost‐effective solution for DNA analysis and species identification to aid conservation efforts. Field testing was performed at Knowsley Safari to demonstrate real‐world applicability of the microfluidic device for testing of biological samples, with results in as little as 30 minutes.

Fission–fusion dynamics allow animals to manage costs and benefits of group living by adjusting group size. The degree of intraspecific variation in fission–fusion dynamics across the geographical range is poorly known. During 2008–2016, 38 adult female Cape buffalo were equipped with GPS collars in three populations located in different protected areas (Gonarezhou National Park and Hwange National Park, Zimbabwe; Kruger National Park, South Africa) to investigate the patterns and environmental drivers of fission–fusion dynamics among populations. We estimated home range overlap and fission and fusion events between Cape buffalo dyads. We investigated the temporal dynamics of both events at daily and seasonal scales and examined the influence of habitat and distance to water on event location. Fission–fusion dynamics were generally consistent across populations: Fission and fusion periods lasted on average between less than one day and three days. However, we found seasonal differences in the underlying patterns of fission and fusion, which point out the likely influence of resource availability and distribution in time on group dynamics: During the wet season, Cape buffalo split and associated more frequently and were in the same or in a different subgroup for shorter periods. Cape buffalo subgroups were more likely to merge than to split in open areas located near water, but overall vegetation and distance to water were very poor predictors of where fission and fusion events occurred. This study is one of the first to quantify fission–fusion dynamics in a single species across several populations with a common methodology, thus robustly questioning the behavioral flexibility of fission–fusion dynamics among environments., The frequency at which Cape buffalos split and join allows them to adjust to environmental conditions. In 3 distinct populations, the associations between individuals last on average between 1 and 3 days, but seasonal differences exist: In the dry season, buffalos split and join less frequently but stay in the same subgroup for longer periods than in wet season. Vegetation openness and distance to water are poor predictors of where fission and fusion events occur.

In contributing to the practice and production of Perth’s vibrant music scene since the 1980s, the Western Australian musician, inventor and instrument-maker Mark Cain (b. 1955) has remained true to a non-commercial instinct to construct wind instruments from discarded PVC piping and, more recently, glove pipes, compressed-air panpipes and bottle reedpipes. In dialogue with Robin Ryan, Cain demystifies the cul-de-sacs and tangents associated with the design and manufacture of instruments and sound gardens made from the simplest of natural and recycled materials. Futuristically, his largely whimsical creations prefigure a musical soundscape that will increasingly depend on locally made, sustainable instruments. In providing common ground for discursive mediation between performance-based and research-based constructs of environment, this conversation strengthens Appadurai’s (1986) notion that ‘Instruments are social things with histories and careers … not what they are made to be, but what they become as they circulate and mutate’.

High-throughput sequencing tools promise to revolutionize many aspects of genetics research, e.g. by allowing the identification of functional adaptive genetic variation. However, the expense and expertise required to apply these tools to basic conservation questions is a challenge for applications outside academia, resulting in a so-called “conservation genomics gap” (Shafer et al. 2015). The conservation genetics paradigm is that basic information about inbreeding and gene flow are often critical to inform conservation management of small populations (Ouborg et al. 2010). This information is often needed quickly and ideally should be accessible to workers without special expertise in genomics (DeSalle & Amato 2004). While the inferential power of high-throughput sequencing to interrogate the genome is profound, the cost for population analysis is higher (though decreasing) than for traditional neutral markers. Thus, the use of neutral markers is still relevant in conservation applications. However, this assumes that neutral markers have been discovered and characterized for a given species of conservation concern, which is often untrue for non-model organisms. Here, we use a fast, cost-efficient, high-throughput sequencing method (Illumina MiSeq) to rapidly identify and characterize microsatellites in the mountain bongo (Tragelaphus eurycerus isaaci, hereafter bongo), which has a clear and timely conservation imperative but lacks any described neutral markers.

Afromontane forests are biodiversity hotspots and provide essential ecosystem services. However, they are under pressure as a result of an expanding human population and the impact of climate change. In many instances electric fencing has become a necessary management strategy to protect forest integrity and reduce human-wildlife conflict. The impact of confining hitherto migratory elephant populations within forests remains unknown, and monitoring largely inaccessible areas is challenging. We explore the application of remote sensing to monitor the impact of confinement, employing the Breaks For Additive Season and Trend (BFAST) time-series decomposition method over a 15-year period on Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) (MOD13Q1) datasets for two Kenyan forests. Results indicated that BFAST was able to identify disturbances from anthropogenic, fire and elephant damage. Sequential monitoring enabled the detection of gradual changes in the forest canopy, with degradation and regeneration being observed in both sites. Annual rates of forest loss in both areas were significantly lower than reported in other studies on Afromontane forests, suggesting that installing fences has reduced land-use conversion from human-related disturbances. Negative changes in EVI were predominantly gradual degradation rather than large-scale, abrupt clearings of the forest. Results presented here demonstrate that BFAST can be used to monitor biotic and abiotic drivers of change in Afromontane forests.

High-throughput sequencing tools promise to revolutionize many aspects of genetic research, e.g. by allowing the identification of functional adaptive genetic variation. However, the expense and expertise required to apply these tools to basic conservation questions is a challenge for applications outside academia, resulting in a so-called 'conservation genomics gap' (Shafer et al. 2015). The conservation genetics paradigm is that, basic information about inbreeding and gene flow are often critical to inform conservation management of small populations (Ouborg et al. 2010). This information is often needed quickly and ideally should be accessible to workers without special expertise in genomics (DeSalle and Amato 2004). While the inferential power of highthroughput sequencing to interrogate the genome is profound, the cost for population analysis is higher (though decreasing) than for traditional neutral markers. Thus, the use of neutral markers is still relevant in conservation applications. However, this assumes that neutral markers have been discovered and characterized for a given species of conservation concern, which is often untrue for nonmodel organisms. Here, we use a fast, cost-efficient, high-throughput sequencing method (Illumina MiSeq) to rapidly identify and characterize microsatellites in the mountain bongo (Tragelaphus eurycerus isaaci), which has a clear and timely conservation imperative but lacks any described neutral markers.

A central premise of conservation biology is that small populations suffer reduced viability through loss of genetic diversity and inbreeding. However, there is little evidence that variation in inbreeding impacts individual reproductive success within remnant populations of threatened taxa, largely due to problems associated with obtaining comprehensive pedigree information to estimate inbreeding. In the critically en- dangered black rhinoceros, a species that experienced severe demographic reductions, we used model selection to identify factors associated with variation in reproductive success (number of offspring). Factors examined as predictors of reproductive success were age, home range size, number of nearby mates, reserve location, and multilocus heterozygosity (a proxy for inbreeding). Multilocus heterozygosity predicted male reproductive success (p 58%) and correlated with male home range size (p 44%). Such effects were not apparent in females, where reproductive success was determined by age (p < 0.01, explained deviance 34%) as females raise calves alone and choose between, rather than compete for, mates. This first report of a 3-way association between an individual male's heterozygosity, reproductive output, and territory size in a large vertebrate is consistent with an asymmetry in the level of intrasexual competition and highlights the relevance of sex-biased inbreeding for the management of many conservation- priority species. Our results contrast with the idea that wild populations of threatened taxa may possess some inherent difference from most nonthreatened populations that necessitates the use of detailed pedigrees to study inbreeding effects. Despite substantial variance in male reproductive success, the increased fitness of more heterozygous males limits the loss of heterozygosity. Understanding how individual differences in genetic diversity mediate the outcome of intrasexual competition will be essential for effective management, particularly in enclosed populations, where individuals have restricted choice about home range location and where the reproductive impact of translocated animals will depend upon the background distribution in individual heterozygosity.

We used genetic tools to assess phylogeographic structure of the common dormouse (Muscardinus avellenarius) since the end of the last glacial maximum, to identify post-glacial dispersal routes and to describe population units for conservation. Comparative analysis of mitochondrial genes (Cytochrome b, 704 bp, D-loop, 506 bp) and one nuclear gene (Beta-Fibrinogen, 550 bp) was conducted to reconstruct the recent demographic history within and between UK and continental European populations. Our analysis indicated phylogeographic variation in the UK is similar in magnitude to that found in other regions of continental Europe and suggests a recent population expansion. We present evidence which supports a single post-glacial colonization into the UK. Dispersal time calculations, calibrated with geophysical events, are coincident with the start of the Holocene period, 7.5–11 kya, a time when geological evidence suggests temperatures were stable, woodland habitat was prevalent and a land bridge was present to allow the dispersal of small mammals into the UK. We discuss our findings in the context of the extant geographical genetic structure described here and in relation to conservation management of this threatened species.

Background Research efforts on whale sharks have so far been limited to sub-adult males which make-up the vast majority of aggregations around the world. The movements of mature sharks, their reproductive techniques and key habitats remain poorly understood, whilst details of this demographic group are the most important to mitigate current threats. This quandary qualifies the use of indirect analyses such as genetic inference to characterise cryptic life-stages of the species. Approach Tissue samples will be collected from free-swimming whale sharks from locations around the WIO with past biopsy efforts providing additional tissue from every tropical ocean. Photographic identification, approximate visual size and gender information will be recorded for each individual. Microsatellite markers will be extracted from the samples using species-specific primers from previous studies. Additional open access sequences will be obtained via GenBank for appropriate locations. Software packages simulating modes of inheritance such as GERUD will be used to reconstruct parental genotypes. Results This is an outline of potential results of the study. Parental genotype reconstruction can provide information on: 1) Number of parents per litter – maternal genotypes will be reconstructed first as the likelihood of sampling littermates is higher than sampling offspring from different females who happened to mate with the same male. Paternal genotypes can be determined once the maternal genotypes are removed from the progeny sequences. 2) Juvenile recruitment – survival rate of individuals per litter, considering however that juvenile female whale sharks are underrepresented in the majority of sampling areas. Incomplete reconstruction of a parental genotype suggests incomplete offspring sampling. 3) Reproductive mode – i.e. monoor polyandry, demonstrated by single or multiple male genotypes per litter (respectively), which may confirm or refute the single only other demonstration of reproductive mechanism, monandry, in the species. 4) Breeding site fidelity – common and complete parental genotypes of either or both parents within an aggregation or in associated areas (assuming monandry) suggests that whale sharks return to or remain in a common area to pup whereas multiple incomplete genotypes may suggest random dispersal from any given pupping site. Conclusions The reproductive patterns of mature sharks, as inferred by these analyses, will define whale shark movements within their circumglobal range and may highlight important habitats such as breeding or pupping grounds. Resources for protecting the species will be limited and so must target these groups and areas to be most effective at mitigating threats and conserving the species.

We describe an accurate, single-step 5 0 exonu- clease assay for gender determination of black rhinoceros Diceros bicornis, which targets a single nucleotide poly- morphism in exon 4 of the sex-linked zinc finger homo- logues in this species. This simple, high-throughput method facilitates the multiple-tubes approach that is necessary when using genetic material derived from non-invasive samples such as faecal material.

A central premise of conservation biology is that small populations suffer reduced viability through loss of genetic diversity and inbreeding. However, there is little evidence that variation in inbreeding impacts individual reproductive success within remnant populations of threatened taxa, largely due to problems associated with obtaining comprehensive pedigree information to estimate inbreeding. In the critically endangered black rhinoceros, a species that experienced severe demographic reductions, we used model selection to identify factors associated with variation in reproductive success (number of offspring). Factors examined as predictors of reproductive success were age, home range size, number of nearby mates, reserve location, and multilocus heterozygosity (a proxy for inbreeding). Multilocus heterozygosity predicted male reproductive success (p0.001, explained deviance58%) and correlated with male home range size (p0.01, r(2)44%). Such effects were not apparent in females, where reproductive success was determined by age (p0.01, explained deviance 34%) as females raise calves alone and choose between, rather than compete for, mates. This first report of a 3-way association between an individual male's heterozygosity, reproductive output, and territory size in a large vertebrate is consistent with an asymmetry in the level of intrasexual competition and highlights the relevance of sex-biased inbreeding for the management of many conservation-priority species. Our results contrast with the idea that wild populations of threatened taxa may possess some inherent difference from most nonthreatened populations that necessitates the use of detailed pedigrees to study inbreeding effects. Despite substantial variance in male reproductive success, the increased fitness of more heterozygous males limits the loss of heterozygosity. Understanding how individual differences in genetic diversity mediate the outcome of intrasexual competition will be essential for effective management, particularly in enclosed populations, where individuals have restricted choice about home range location and where the reproductive impact of translocated animals will depend upon the background distribution in individual heterozygosity.