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Premise of research. Reproductive strategies such as iteroparity can be driven by developmental decisions involving morphology and physiology. Despite a rich theoretical framework for studying iter...

Urbanization displaces agriculture and natural ecosystems, constraining food security and carbon (C) sinks. A proposed solution, Urban Food Forestry (UFF), promises local food from trees that can sequester C faster than other land cover types as long as soil function improves. We compared fine-scale variation in soil physical, chemical and biological properties within and between UFF and traditional lawn for evidence of changes in belowground ecosystem services. Both land covers sequestered C, but UFF did so nearly an order of magnitude faster, especially in upper soil strata where soil bulk density fell by 50% and microbial activity increased by an order of magnitude. Species richness of both soil fungi and bacteria increased along with nutrient concentrations. Contrary to expectations, that different tree traits would drive increasing fine scale variability in C density, soils beneath the UFF became more uniform, which is consistent with the rapid emergence of system-level regulation. Soil C mass balance may distinguish forests from collections of trees and determine how long UFF helps cities store their carbon and eat it too.

Diverse communities of fungi and bacteria in deadwood mediate wood decay. While rates of decomposition vary greatly among woody species and spatially distinct habitats, the relative importance of these factors in structuring microbial communities and whether these shift over time remains largely unknown. We characterized fungal and bacterial diversity within pieces of deadwood that experienced 6.3-98.8% mass loss while decaying in common garden 'rotplots' in a temperate oak-hickory forest in the Ozark Highlands, MO, USA. Communities were isolated from 21 woody species that had been decomposing for 1-5 years in spatially distinct habitats at the landscape scale (top and bottom of watersheds) and within stems (top and bottom of stems). Microbial community structure varied more strongly with wood traits than with spatial locations, mirroring the relative role of these factors on decay rates on the same pieces of wood even after 5 years. Co-occurring fungal and bacterial communities persistently influenced one another independently from their shared environmental conditions. However, the relative influence of wood construction versus spatial locations differed between fungi and bacteria, suggesting that life history characteristics of these clades structure diversity differently across space and time in decomposing wood.

Amphicarpic plants produce both above-ground and below-ground seeds. Because below-ground seeds are protected in the soil and may maintain viability when above-ground conditions are stressful, they were proposed as an adaptation to recolonize a site after disturbance. However, whether below-ground seeds are the main colonizers after a disturbance remains unknown. Our goal was to understand whether recolonization by an amphicarpic species after fire was accomplished primarily through germination of seeds produced above-ground or below-ground. We investigated Polygala lewtonii, an amphicarpic, perennial species endemic to fire-prone Florida sandhill and scrub, where fire kills plants but subsequently increases recruitment and population sizes. Polygala lewtonii produces three flower types: above-ground chasmogamous flowers and above-ground and below-ground cleistogamous flowers, with previous research demonstrating chasmogamous flowers produce a much greater proportion of seeds than cleistogamous flowers. We quantified outcrossing in seeds produced by chasmogamous flowers to determine whether it differed from the 100 % self-fertilized below-ground seeds. Approximately 25 % of seeds from chasmogamous flowers showed evidence of cross-pollination. Assuming that chasmogamous flowers produce the majority of the above-ground seeds, as was shown previously, this indicates it is possible to differentiate between germination by above-ground versus below-ground seeds in post-fire colonization. We next compared genetic diversity, admixture, inbreeding and population genetic structure pre- and post-fire. If fire promoted germination of chasmogamous seeds, heterozygosity and admixture would increase, and genetic structure and inbreeding would decrease. Instead, inbreeding and genetic structure increased and admixture decreased, suggesting that the below-ground selfed seeds (with limited dispersal ability) increased their contribution to the population after fire, possibly because fire reduced above-ground seed viability. Additionally, new alleles not found previously in range-wide analyses emerged from the seed bank post-fire. These results suggest that amphicarpy is a powerful adaptation to preserve genetic variation, maintain adaptive potential and promote rapid post-fire colonization., We examined the mating system’s response to fire in Polygala lewtonii, a species endemic to fire-prone Florida sandhill and scrub. Polygala lewtonii has three flower types: above-ground chasmogamous (open-pollinated) and cleistogamous (closed, obligately self-fertilizing) flowers and below-ground cleistogamous flowers, with fruits produced both above-ground and below-ground. We used a genetic approach to test whether post-fire recolonization was accomplished primarily through germination of above-ground or below-ground seed. The below-ground selfed seeds showed an increased contribution to the population and new alleles emerged from the seed bank post-fire. These results suggest that amphicarpy is an adaptation to promote rapid post-fire colonization and preserve genetic variation and adaptive potential.

We introduce the AusTraits database - a compilation of values of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 448 traits across 28,640 taxa from field campaigns, published literature, taxonomic monographs, and individual taxon descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological attributes (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual- and species-level measurements coupled to, where available, contextual information on site properties and experimental conditions. This article provides information on version 3.0.2 of AusTraits which contains data for 997,808 trait-by-taxon combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data, which also provides a template for other national or regional initiatives globally to fill persistent gaps in trait knowledge., Measurement(s)plant traitTechnology Type(s)digital curationSample Characteristic - OrganismViridiplantaeSample Characteristic - LocationAustralia Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.14545755

Assessment of endophytic and saprotrophic microbial communities from wood-extracted DNA presents challenges due to the presence of surface microbes that contaminate samples and plant compounds that act as inhibiting agents. Here, we describe a method for decontaminating, sampling, and processing wood at various stages of decay for high-throughput extraction and purification of DNA.

Assessment of endophytic and saprotrophic microbial communities from wood-extracted DNA presents challenges due to the presence of surface microbes that contaminate samples and plant compounds that act as inhibiting agents. Here, we describe a method for decontaminating, sampling, and processing wood at various stages of decay for high-throughput extraction and purification of DNA.

Amphicarphic species produce both aboveground and belowground seeds; the belowground seeds have been proposed to be an adaptation to disturbed sites because they are protected belowground, enabling them to persist and recolonize a site after disturbance. However, it is unknown whether such seeds indeed serve as the main colonizers after a disturbance. The amphicarpic species Polygala lewtonii is endemic to fire-prone Florida sandhill and scrub and is among only a few species with three flower types (aboveground chasmogamous flowers and both above and belowground cleistogamous flowers). The goal of this study was to understand whether recolonization of sites by P. lewtonii was accomplished primarily through germination of belowground seed. First, we quantified the outcrossing rate in seeds produced by aboveground chasmogamous flowers to determine whether we could detect differences in colonization of between seeds produced aboveground vs. belowground. Approximately 25% of seeds from aboveground chasmogamous flowers showed evidence of cross pollination and the seeds showed greater heterozygosity and lower inbreeding coefficients than pure selfing, indicating that it is possible to differentiate between selfed and non-selfed seed types in postfire colonization. Second, we analyzed genetic diversity, inbreeding, and genetic structure of the populations before and after a prescribed fire. If heterozygosity and admixture increased, and spatial population genetic structure and inbreeding decreased, this would indicate that fire promoted germination of outcrossed seed from aboveground flowers. However, inbreeding increased and spatial genetic structure and admixture decreased after fire, suggesting that selfed seed produced by belowground flowers predominantly recolonized the site after fire. Thus, amphicarpy is a powerful adaptation to fire-maintained environments by producing seeds that are well suited to the range of conditions presented by a highly variable, disturbance prone habitat.

As the primary decomposers of organic material in terrestrial ecosystems, fungi are critical agents of the global carbon cycle. Yet our ability to link fungal community composition to ecosystem functioning is constrained by a limited understanding of the factors accounting for different wood decomposition rates among fungi. Here we examine which traits best explain fungal decomposition ability by combining detailed trait-based assays on 34 saprotrophic fungi from across North America in the laboratory with a 5-y field study comprising 1,582 fungi isolated from 74 decomposing logs. Fungal growth rate (hyphal extension rate) was the strongest single predictor of fungal-mediated wood decomposition rate under laboratory conditions, and accounted for up to 27% of the in situ variation in decomposition in the field. At the individual level, decomposition rate was negatively correlated with moisture niche width (an indicator of drought stress tolerance) and with the production of nutrient-mineralizing extracellular enzymes. Together, these results suggest that decomposition rates strongly align with a dominance-tolerance life-history trade-off that was previously identified in these isolates, forming a spectrum from slow-growing, stress-tolerant fungi that are poor decomposers to fast-growing, highly competitive fungi with fast decomposition rates. Our study illustrates how an understanding of fungal trait variation could improve our predictive ability of the early and midstages of wood decay, to which our findings are most applicable. By mapping our results onto the biogeographic distribution of the dominance-tolerance trade-off across North America, we approximate broad-scale patterns in intrinsic fungal-mediated wood decomposition rates.

Pest outbreaks are driving tree dieback and major influxes of deadwood into forest ecosystems. Understanding how pulses of deadwood impact the climate system requires understanding which factors influence greenhouse gas production during wood decay. Recent analyses identify stem diameter as an important control, but report effects that vary in magnitude and direction. This complexity may reflect interacting effects of soil contact, geometry and variable tissue properties. To dissect these effects, we implemented a three-way factorial experiment in Fraxinus americana, (white ash), an iconic North American species threatened by an invasive beetle. Soil contact accelerated decay rates by an order of magnitude with an effect that varied with stem diameter, not bark presence. After experimentally controlling surface area-to-volume ratio, half-buried wide stems decayed more slowly than half-buried narrow stems but more quickly than the aggregate decay rate of buried and suspended stems. These results closely matched variation in moisture content within and among samples, suggesting that limited vertical conduction of soil moisture through deadwood mediates the effect of stem diameter on wood decay. Soil contact also influenced greenhouse gas concentrations reinforcing recent evidence that deadwood acts as a source for CO2 and CH4 while acting as a sink for N2O. Our results suggest that managing tree species affected by pest outbreaks, including F. americana, for biomass salvage and greenhouse gas mitigation requires understanding traits that mediate wood permeability and diffusivity to soil moisture and greenhouse gases.

Mutualistic symbioses with mycorrhizal fungi are widespread in plants. The majority of plant species associate with arbuscular mycorrhizal (AM) fungi. By contrast, the minority associate with ectomycorrhizal (EM) fungi, have abandoned the symbiosis and are nonmycorrhizal (NM), or engage in an intermediate, weakly AM symbiosis (AMNM). To understand the processes that maintain the mycorrhizal symbiosis or cause its loss, we reconstructed its evolution using a ∼3,000-species seed plant phylogeny integrated with mycorrhizal state information. Reconstruction indicated that the common ancestor of seed plants most likely associated with AM fungi and that the EM, NM, and AMNM states descended from the AM state. Direct transitions from the AM state to the EM and NM states were infrequent and generally irreversible, implying that natural selection or genetic constraint could promote stasis once a particular state evolved. However, the evolution of the NM state was more frequent via an indirect pathway through the AMNM state, suggesting that weakening of the AM symbiosis is a necessary precursor to mutualism abandonment. Nevertheless, reversions from the AMNM state back to the AM state were an order of magnitude more likely than transitions to the NM state, suggesting that natural selection favors the AM symbiosis over mutualism abandonment.

Environmental forces and biotic interactions, both positive and negative, structure ecological communities, but their relative roles remain obscure despite strong theory. For instance, ecologically similar species, based on the principle of limiting similarity, are expected to be most competitive and show negative interactions. Specious communities that assemble along broad environmental gradients afford the most power to test theory, but the communities often are difficult to quantify. Microbes, specifically fungal endophytes of wood, are especially suited for testing community assembly theory because they are relatively easy to sample across a comprehensive range of environmental space with clear axes of variation. Moreover, endophytes mediate key forest carbon cycle processes, and although saprophytic fungi from dead wood typically compete, endophytic fungi in living wood may enhance success through cooperative symbioses. To classify interactions within endophyte communities, we analyzed fungal DNA barcode variation across 22 woody plant species growing in woodlands near Richmond, New South Wales, Australia. We estimated the response of endophytes to the measured wood environment (i.e., 11 anatomical and chemical wood traits) and each other using latent-variable models and identified recurrent communities across wood environments using model-based classification. We used this information to evaluate whether (1) co-occurrence patterns are consistent with strong competitive exclusion, and (2) a priori classifications by trophic mode and phylum distinguish taxa that are more likely to have positive vs. negative associations under the principle of limiting similarity. Fungal endophytes were diverse (mean = 140 taxa/sample), with differences in community composition structured by wood traits. Variation in wood water content and carbon concentration were associated with especially large community shifts. Surprisingly, after accounting for wood traits, fungal species were still more than three times more likely to have positive than negative co-occurrence patterns. That is, patterns consistent with strong competitive exclusion were rare, and positive interactions among fungal endophytes were more common than expected. Confirming the frequency of positive vs. negative interactions among fungal taxa requires experimental tests, and our findings establish clear paths for further study. Evidence to date intriguingly suggests that, across a wide range of wood traits, cooperation may outweigh combat for these fungi.

Whether global change will drive changing forests from net carbon (C) sinks to sources relates to how quickly deadwood decomposes. Because complete wood mineralization takes years, most experiments focus on how traits, environments and decomposer communities interact as wood decay begins. Few experiments last long enough to test whether drivers change with decay rates through time, with unknown consequences for scaling short-term results up to long-term forest ecosystem projections. Using a 7 year experiment that captured complete mineralization among 21 temperate tree species, we demonstrate that trait effects fade with advancing decay. However, wood density and vessel diameter, which may influence permeability, control how decay rates change through time. Denser wood loses mass more slowly at first but more quickly with advancing decay, which resolves ambiguity about the after-life consequences of this key plant functional trait by demonstrating that its effect on decay depends on experiment duration and sampling frequency. Only long-term data and a time-varying model yielded accurate predictions of both mass loss in a concurrent experiment and naturally recruited deadwood structure in a 32-year-old forest plot. Given the importance of forests in the carbon cycle, and the pivotal role for wood decay, accurate ecosystem projections are critical and they require experiments that go beyond enumerating potential mechanisms by identifying the temporal scale for their effects.

Deadwood is a large aboveground carbon (C) pool that regulates how forests respond to global change. Due to slow decomposition, CWD delays C emissions following major forest disturbances so predicting how carbon balance will respond to changing disturbance regimes requires identifying factors that influence the full temporal trajectory of wood decay from senescence to complete mineralization. However, typical experiments only examine how wood decay begins with unknown consequences for scaling short-term results up to long-term forest ecosystem projections. Using a 7-year experiment that captured complete mineralization among 21 temperate tree species, we demonstrate that (1) wood traits are more important than environmental drivers, (2) trait effects fade with advancing decay and (3) permeability-related traits control how decay rates change through time. Only long-term data and a time-varying model yielded accurate predictions of both mass loss in a concurrent experiment and naturally-recruited deadwood structure in a 32-year old forest plot. Given the importance of forests in the carbon cycle, and the pivotal role for wood decay, accurate ecosystem projections are critical and they require experiments that go beyond enumerating potential mechanisms by identifying the temporal scale for their effects.

Deadwood plays important roles in forest ecosystems by storing carbon, influencing hydrology, and provisioning countless organisms. Models for these processes often assume that deadwood does not move and ignore redistribution that occurs when trees fall. To evaluate the effects of treefall, we provide the first direct estimates for the magnitude, direction, and drivers of deadwood movement in a long-term oak–hickory forest dynamics plot in Missouri, USA. Among 1871 total pieces of deadwood, logs today pointed downslope more often than branches and occurred at lower elevation than snags. Of these, 477 logs retained tags from which we reconstructed movement using new formulae for reconciling survey coordinates and calculating log shape. Relocated logs occurred at lower elevation than their original rooting location, with the magnitude of the drop dependent on log size, degree of decay, and slope. Although changes in elevation were modest, the log centroids moved up to several meters horizontally. Consequently, as large trees fall, they predictably redistribute deadwood downhill, suggesting that models of deadwood dynamics in small inventory plots may gain accuracy by incorporating import and export along with recruitment and decay. We highlight implications of small-scale deadwood movement for forest inventories, carbon dynamics, and biodiversity.

Selective logging, the targeted harvesting of timber trees in a single cutting cycle, is globally rising in extent and intensity. Short-term impacts of selective logging on tropical forests have been widely investigated, but long-term effects on temporal dynamics of forest structure and composition are largely unknown. Understanding these long-term dynamics will help determine whether tropical forests are resilient to selective logging and inform choices between competing demands of anthropogenic use versus conservation of tropical forests. Forest dynamics can be studied within the framework of succession theory, which predicts that temporal turnover rates should decline with time since disturbance. Here, we investigated the temporal dynamics of a tropical forest in Kibale National Park, Uganda over 45 years following selective logging. We estimated turnover rates in stems, species composition, and functional traits (wood density and diameter at breast height), using observations from four censuses in 1989, 1999, 2006, and 2013, of stems ≥ 10 cm diameter within 17 unlogged and 9 logged 200 × 10 m vegetation plots. We used null models to account for interdependencies among turnover rates in stems, species composition, and functional traits. We tested predictions that turnover rates should be higher and decrease with increasing time since the selective logging event in logged forest, but should be less temporally variable in unlogged forest. Overall, we found higher turnover rates in logged forest for all three attributes, but turnover rates did not decline through time in logged forest and was not less temporally variable in unlogged forest. These results indicate that successional models that assume recovery to pre-disturbance conditions are inadequate for predicting the effects of selective logging on the dynamics of the tropical forest in Kibale. Selective logging resulted in persistently higher turnover rates, which may compromise the carbon storage capacity of Kibale’s forest. Selective logging effects may also interact with effects from other global trends, potentially causing major long-term shifts in the dynamics of tropical forests. Similar studies in tropical forests elsewhere will help determine the generality of these conclusions. Ultimately, the view that selective logging is a benign approach to the management of tropical forests should be reconsidered in the light of studies of the effects of this practice on long-term forest dynamics.

Summary Woody plants store large quantities of carbon (C) and nutrients. As plants senesce and decay, these stores transfer to the soil or other organisms or are released to the atmosphere. Exogenous factors such as topographic position and microclimatic and edaphic conditions tied to locations affect decay rates; however, we know less about how exogenous relative to endogenous factors such as morphological, anatomical and chemical construction tied to plant species affect these rates, especially across different tissue types. We monitored stem, fine branch and leaf decay over 1 year in ‘rot plots’ distributed across four watersheds in ridge top and valley bottom habitats in a temperate deciduous oak-hickory forest at Tyson Research Center, MO, USA, in the Ozark Highlands for 21 species of woody plants that vary in their constructions. We found poor coordination across tissues in construction and decay, which likely reflects how functional constraints on living tissues influence recalcitrance to decay. Additionally, for all three tissues, species membership and construction were better predictors of decay than was location. Of the construction traits, chemical composition including total fibre, lignin, cellulose, hemicellulose and concentrations of multiple microelements were the best predictors of decay, although the strength of these relationships differed among tissues. Synthesis. We have long known that rates of biogeochemical cycling are influenced by exogenous factors, such as climatic and edaphic factors. Here, we show across plant tissues that endogenous factors, including species identity and tissue construction, can have stronger controls on rates of decay within our study system than do exogenous factors. However, it is likely that the relative strengths of these different controls change through time and among tissues. We predict that anatomical and morphological controls may be more important at early stages and exogenous factors may be more important at later stages of decay.

Coarse woody debris (CWD) plays important roles in forests including carbon storage. Calculating the size of this carbon pool from survey data entails estimating the volume and density of dead wood. Density is highly correlated with other mechanical parameters in intact wood, explaining how penetrometers, which measure a mechanical parameter related to hardness, have proven useful for estimating dead wood density. However, the relationship between wood density and hardness varies with three key factors that vary in CWD: moisture content, tree species and degree of decay. We estimated how these factors influence penetrometer measurements across conditions ranging from lab standards to field conditions during a CWD survey. When measuring experimentally decayed wood under standard conditions, penetrometer distance was highly correlated with sample density and the effects of moisture content and interspecific variation were similar to those expected from analyses of intact wood. However, when we relaxed experimental controls and included samples that had decayed for different lengths of time, these relationships shifted such that penetrometer measurements no longer correlated with intact wood hardness and tended to increase relative to density and moisture content. The decoupling of mechanical properties in decaying wood is consistent with case hardening, which developed differently in different species and contributed to high variability in penetrometer measurements during the CWD survey. These results demonstrate temporal changes in decaying wood mechanical properties that have implications for surveying CWD and understanding carbon dynamics in temperate hardwood forests.

Vessel length is an important but understudied dimension of variation in angiosperm vascular anatomy. Among other traits, vessel length mediates an important tradeoff between hydraulic efficiency and safety that could influence how plants respond to extreme weather with climate change. However, the functional significance of vessel length variation within individual stems is poorly known, in part because existing data analysis methods handle uncertainty in a way that makes vessel length distributions difficult to compare. We provide a solution to this problem through a hierarchical Bayesian framework for estimating vessel lengths and we demonstrate the flexibility of this method by applying it to data from serial cross sections of dye injected stems. Our approach can accelerate data collection and accommodate associated uncertainties by statistically correcting for bias and error that result from subsampling images. We illustrate our analytical framework by estimating and comparing vessel length distributions for 21 woody species characteristic of a North American forest. The best-fit model corrected for both bias due to secondary growth and sampling error within and among species. Vessel length estimates from this model varied by almost an order of magnitude and parameters of these distributions correlated with point estimates derived from a different, commonly used method. Furthermore, we show how key contrasts can be estimated with the Bayesian framework, and in doing so, we show that the shape of the vessel length distribution differed between ring- and diffuse-porous species, suggesting that within-stem vessel length variation corresponds to water stress seasonality and contributes to landscape-level habitat segregation. Our analysis method revealed the importance of within-stem variation in vessel length, and our results complement work on between-species variation in average vessel length, further illuminating how vascular anatomy can influence woody plants’ responses to water stress.

The carbon cycle pulses with life. Each year, atmospheric CO 2 concentrations rise and fall as the balance of photosynthesis and respiration shifts with the seasons. The related exchanges of carbon between atmosphere, land, and oceans may balance such that atmospheric CO 2 and the greenhouse effect change little between years. Over long time scales, geological processes and evolutionary change can shift the controls on the carbon cycle with major impacts on climate and biodiversity. Recent syntheses of comparative paleoclimatic and biogeochemical data document several episodes during earth’s history which illustrate how the carbon cycle can mediate feedback between biodiversity and climate.

Polyploidy may promote diversification by generating reproductive isolation between ploidy levels, but this reproductive barrier may not be absolute. Several recent analyses of diploid–tetraploid contact zones have found evidence for hybridization. In these cases, inter-cytotype gene flow is often associated with morphologically intergrading populations. In this study, we combine cytological, fitness and population genetic data to examine the evolutionary role of a morphologically intergrading population at a contact zone between species with different ploidy levels in Dodecatheon. Diploid D. frenchii and tetraploid D. meadia are usually distinguished by leaf-shape characters. In southern Illinois, where these taxa occur in parapatry, a morphologically intergrading population includes the first documented tetraploid with D. frenchii morphology. Most plants in this intergrading population are fertile, and a nearby typical population of D. meadia has plastid DNA haplotypes that only occur in D. frenchii elsewhere in southern Illinois. These results suggest that fit neo-tetraploids in this intergrading population have facilitated local introgression between ploidy levels. Similar patterns in other regions where these taxa co-occur may explain weak range-wide genetic differentiation between these species. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, 168, 91–100.

In taxa with few diagnostic characters, highly variable populations pose a major challenge to delimiting species. This is especially true in Dodecatheon (Primulaceae), which has a notoriously complex taxonomic history. Previous biosystematic studies of Dodecatheon in southern Illinois support the recognition of two species: D. frenchii, a diploid sandstone cliff endemic, and D. meadia, a widespread tetraploid. However, only one morphological character distinguishes them and some experimental evidence suggests that this character may be environmentally induced. Furthermore, authors have disagreed about the nature of morphologically intergrading populations. In this study, we document patterns of variation for fruit and seed characters among populations in southern Illinois, including one atypical, morphologically intergrading population. Different seed shapes help distinguish these taxa, both in southern Illinois and across their larger ranges. We also show that the intergrading population is sign...

Anthropogenic climate change may threaten many species with extinction. However, species at risk today survived global climate change in recent geological history. Describing how habitat tracking and adaptation allowed species to survive warming since the end of the Pleistocene can indicate the relative importance of dispersal and natural selection during climate change. By taking this historical perspective, we can identify how contemporary climate change could interfere with these mechanisms and threaten the most vulnerable species. We focused on a group of closely related plant species in the genus Dodecatheon (Primulaceae) in eastern North America. Two rare species ( Dodecatheon amethystinum and Dodecatheon frenchii ) that are endemic to patchy cool cliffs may be glacial relicts whose ranges constricted following the last glacial maximum. Alternatively, these species may be extreme ecotypes of a single widespread species ( Dodecatheon meadia ) that quickly adapted to microclimatic differences among habitats. We test support for these alternative scenarios by combining ecophysiological and population genetic data at a regional scale. An important ecophysiological trait distinguishes rare species from D. meadia , but only a few northern populations of D. amethystinum are genetically distinctive. These relict populations indicate that habitat tracking did occur with historical climate change. However, relatively stronger evidence for isolation by distance and admixture suggests that local adaptation and genetic introgression have been at least as important. The complex response of Dodecatheon to historical climate change suggests that contemporary conservation efforts should accommodate evolutionary processes, in some cases by restoring genetic connectivity between ecologically differentiated populations.

Aim Species richness has been observed to increase with productivity at large spatial scales, though the strength of this relationship varies among functional groups. In forests, canopy trees shade understorey plants, and for this reason we hypothesize that species richness of canopy trees will depend on macroclimate, while species richness of shorter growth forms will additionally be affected by shading from the canopy. In this study we test for differences in species richness–productivity relationships (SRPRs) among growth forms (canopy trees, shrubs, herbaceous species) in small forest plots. Location We analysed 231 plots ranging from 34.0° to 48.3° N latitude and from 75.0° to 124.2° W longitude in the United States. Methods We analysed data collected by the USDA Forest Inventory and Analysis program for plant species richness partitioned into different growth forms, in small plots. We used actual evapotranspiration as a macroclimatic estimate of regional productivity and calculated the area of light-blocking tissue in the immediate area surrounding plots for an estimate of the intensity of local shading. We estimated and compared SRPRs for different partitions of the species richness dataset using generalized linear models and we incorporated the possible indirect effects of shading using a structural equation model. Results Canopy tree species richness increased strongly with regional productivity, while local shading primarily explained the variation in herbaceous plant richness. Shrub species richness was related to both regional productivity and local shading. Main conclusions The relationship between total forest plant species richness and productivity at large scales belies strong effects of local interactions. Counter to the pattern for overall richness, we found that understorey herbaceous plant species richness does not respond to regional productivity gradients, and instead is strongly influenced by canopy density, while shrub species richness is under multivariate control.

The forests in the Central Hardwoods Region will be affected directly and indirectly by a changing climate over the next 100 years. This assessment evaluates the vulnerability of terrestrial ecosystems in the Central Hardwoods Region of Illinois, Indiana, and Missouri to a range of future climates. Information on current forest conditions, observed climate trends, projected climate changes, and impacts to forest ecosystems was considered in order to assess vulnerability to climate change. Mesic upland forests were determined to be the most vulnerable to projected changes in climate, whereas many systems adapted to fire and drought, such as open woodlands, savannas, and glades, were perceived as less vulnerable. Projected changes in climate and the associated ecosystem impacts and vulnerabilities will have important implications for economically valuable timber species, forest-dependent wildlife and plants, recreation, and long-range planning.

West Nile virus, which was recently introduced to North America, is a mosquito-borne pathogen that infects a wide range of vertebrate hosts, including humans. Several species of birds appear to be the primary reservoir hosts, whereas other bird species, as well as other vertebrate species, can be infected but are less competent reservoirs. One hypothesis regarding the transmission dynamics of West Nile virus suggests that high bird diversity reduces West Nile virus transmission because mosquito blood-meals are distributed across a wide range of bird species, many of which have low reservoir competence. One mechanism by which this hypothesis can operate is that high-diversity bird communities might have lower community-competence, defined as the sum of the product of each species' abundance and its reservoir competence index value. Additional hypotheses posit that West Nile virus transmission will be reduced when either: (1) abundance of mosquito vectors is low; or (2) human population density is low. We assessed these hypotheses at two spatial scales: a regional scale near Saint Louis, MO, and a national scale (continental USA). We found that prevalence of West Nile virus infection in mosquito vectors and in humans increased with decreasing bird diversity and with increasing reservoir competence of the bird community. Our results suggest that conservation of avian diversity might help ameliorate the current West Nile virus epidemic in the USA.

Deadwood, long recognized as playing an important role in storing carbon and releasing it as CO2 in forest ecosystems, is more recently drawing attention for its potential role in the cycling of other greenhouse trace gases. Across three Northeastern and Central US forests, mean methane (CH4) concentrations in deadwood were 23 times atmospheric levels (43.0 μL L−1 ± 12.3; mean ± SE), indicating a lower bound, mean radial wood surface area flux of ~6 × 10−4 μmol CH4 m−2 s−1. Site, decay class, log diameter, and species were all highly significant predictors of CH4 abundance in deadwood, and diameter and decay class interacted as important controls limiting CH4 concentrations in the smallest and most decayed logs. Nitrous oxide (N2O) concentrations were negatively correlated with CH4 (r2 = −0.20, p < 0.001) and on average ~25 % lower than ambient (276.9 nL L−1 ± 2.9; mean ± SE), indicating net consumption of nitrous oxide. Oxygen (O2) concentrations were uniformly near anaerobic (355.8 μL L−1 ±1.2; mean ± SE), and CO2 was elevated from atmospheric (9336.9 μL L−1 ± 600.6; mean ± SE). Most notably, our observations that CH4 concentrations were highest in the least decayed wood, may suggest that methanogenesis is not fuelled by structural wood decomposition but rather by consumption of more labile nonstructural carbohydrates.