15,677 results on '"Boxer A"'
Search Results
2. Dark Matter Search Results from 4.2 Tonne-Years of Exposure of the LUX-ZEPLIN (LZ) Experiment
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Bargemann, J. W., Barillier, E. E., Bauer, D., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chin, Y. T., Chott, N. I., Converse, M. V., Coronel, R., Cottle, A., Cox, G., Curran, D., Dahl, C. E., Darlington, I., Dave, S., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Di Felice, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Dubey, S., Eriksen, S. R., Fan, A., Fayer, S., Fearon, N. M., Fieldhouse, N., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Ghosh, A., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Haiston, J. J., Hall, C. R., Hall, T. J., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., K., Meghna K., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kim, Y. D., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Lawes, C., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Lippincott, W. H., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., McLaughlin, J. B., McMonigle, R., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., O'Brien, C. L., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Oyulmaz, K. Y, Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Richards, A., Riffard, Q., Rischbieter, G. R. C., Ritchey, E., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Sehr, G., Shafer, B., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Usón, A., Vacheret, A., Vaitkus, A. C., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Weeldreyer, L., Whitis, T. J., Wild, K., Williams, M., Wisniewski, W. J., Wolf, L., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xu, J., Xu, Y., Yeh, M., Yeum, D., Zha, W., and Zweig, E. A.
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High Energy Physics - Experiment - Abstract
We report results of a search for nuclear recoils induced by weakly interacting massive particle (WIMP) dark matter using the LUX-ZEPLIN (LZ) two-phase xenon time projection chamber. This analysis uses a total exposure of $4.2\pm0.1$ tonne-years from 280 live days of LZ operation, of which $3.3\pm0.1$ tonne-years and 220 live days are new. A technique to actively tag background electronic recoils from $^{214}$Pb $\beta$ decays is featured for the first time. Enhanced electron-ion recombination is observed in two-neutrino double electron capture decays of $^{124}$Xe, representing a noteworthy new background. After removal of artificial signal-like events injected into the data set to mitigate analyzer bias, we find no evidence for an excess over expected backgrounds. World-leading constraints are placed on spin-independent (SI) and spin-dependent WIMP-nucleon cross sections for masses $\geq$9 GeV/$c^2$. The strongest SI exclusion set is $2.1\times10^{-48}$ cm$^{2}$ at the 90% confidence level at a mass of 36 GeV/$c^2$, and the best SI median sensitivity achieved is $5.0\times10^{-48}$ cm$^{2}$ for a mass of 40 GeV/$c^2$., Comment: 9 pages, 7 figures. See https://www.hepdata.net/record/155182 for a data release related to this paper
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- 2024
3. The data acquisition system of the LZ dark matter detector: FADR
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Aalbers, J, Akerib, DS, Al Musalhi, AK, Alder, F, Amarasinghe, CS, Ames, A, Anderson, TJ, Angelides, N, Araújo, HM, Armstrong, JE, Arthurs, M, Baker, A, Balashov, S, Bang, J, Barillier, EE, Bargemann, JW, Beattie, K, Benson, T, Bhatti, A, Biekert, A, Biesiadzinski, TP, Birch, HJ, Bishop, E, Blockinger, GM, Boxer, B, Brew, CAJ, Brás, P, Buckley, JH, Burdin, S, Buuck, M, Carmona-Benitez, MC, Carter, M, Chawla, A, Chen, H, Cherwinka, JJ, Chin, YT, Chott, NI, Converse, MV, Cottle, A, Cox, G, Curran, D, Dahl, CE, David, A, Delgaudio, J, Dey, S, de Viveiros, L, Di Felice, L, Dimino, T, Ding, C, Dobson, JEY, Druszkiewicz, E, Eriksen, SR, Fan, A, Fearon, NM, Fieldhouse, N, Fiorucci, S, Flaecher, H, Fraser, ED, Fruth, TMA, Gaitskell, RJ, Geffre, A, Gelfand, R, Genovesi, J, Ghag, C, Gibbons, R, Gokhale, S, Green, J, van der Grinten, MGD, Haiston, JJ, Hall, CR, Han, S, Hartigan-O’Connor, E, Haselschwardt, SJ, Hernandez, MA, Hertel, SA, Heuermann, G, Homenides, GJ, Horn, M, Huang, DQ, Hunt, D, Jacquet, E, James, RS, Johnson, J, Kaboth, AC, Kamaha, AC, Kannichankandy, M, Khaitan, D, Khazov, A, Khurana, I, Kim, J, Kim, YD, Kingston, J, Kirk, R, Kodroff, D, Korley, L, Korolkova, EV, Koyuncu, M, Kraus, H, Kravitz, S, and Kreczko, L
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Nuclear and Plasma Physics ,Synchrotrons and Accelerators ,Physical Sciences ,Networking and Information Technology R&D (NITRD) ,Astronomical and Space Sciences ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Other Physical Sciences ,Nuclear & Particles Physics ,Nuclear and plasma physics - Abstract
The Data Acquisition System (DAQ) for the LUX-ZEPLIN (LZ) dark matter detector is described. The signals from 745 PMTs, distributed across three subsystems, are sampled with 100-MHz 32-channel digitizers (DDC-32s). A basic waveform analysis is carried out on the on-board Field Programmable Gate Arrays (FPGAs) to extract information about the observed scintillation and electroluminescence signals. This information is used to determine if the digitized waveforms should be preserved for offline analysis. The system is designed around the Kintex-7 FPGA. In addition to digitizing the PMT signals and providing basic event selection in real time, the flexibility provided by the use of FPGAs allows us to monitor the performance of the detector and the DAQ in parallel to normal data acquisition. The hardware and software/firmware of this FPGA-based Architecture for Data acquisition and Realtime monitoring (FADR) are discussed and performance measurements are described.
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- 2024
4. Gene-Specific Effects on Brain Volume and Cognition of TMEM106B in Frontotemporal Lobar Degeneration.
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Vandebergh, Marijne, Ramos, Eliana, Corriveau-Lecavalier, Nick, Ramanan, Vijay, Kornak, John, Mester, Carly, Kolander, Tyler, Brushaber, Danielle, Staffaroni, Adam, Geschwind, Daniel, Wolf, Amy, Kantarci, Kejal, Gendron, Tania, Petrucelli, Leonard, Van den Broeck, Marleen, Wynants, Sarah, Baker, Matthew, Borrego-Écija, Sergi, Appleby, Brian, Barmada, Sami, Bozoki, Andrea, Clark, David, Darby, R, Dickerson, Bradford, Domoto-Reilly, Kimiko, Fields, Julie, Galasko, Douglas, Ghoshal, Nupur, Graff-Radford, Neill, Grant, Ian, Honig, Lawrence, Hsiung, Ging-Yuek, Huey, Edward, Irwin, David, Knopman, David, Kwan, Justin, Léger, Gabriel, Litvan, Irene, Masdeu, Joseph, Mendez, Mario, Onyike, Chiadi, Pascual, Belen, Pressman, Peter, Ritter, Aaron, Roberson, Erik, Snyder, Allison, Sullivan, Anna, Tartaglia, Maria, Wint, Dylan, Heuer, Hilary, Forsberg, Leah, Boxer, Adam, Rosen, Howard, Boeve, Bradley, and Rademakers, Rosa
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Humans ,Female ,Male ,Membrane Proteins ,Middle Aged ,Frontotemporal Lobar Degeneration ,Aged ,Nerve Tissue Proteins ,Brain ,Polymorphism ,Single Nucleotide ,Gray Matter ,Cognition ,Organ Size ,Cross-Sectional Studies ,Longitudinal Studies ,Magnetic Resonance Imaging - Abstract
BACKGROUND AND OBJECTIVES: TMEM106B has been proposed as a modifier of disease risk in FTLD-TDP, particularly in GRN pathogenic variant carriers. Furthermore, TMEM106B has been investigated as a disease modifier in the context of healthy aging and across multiple neurodegenerative diseases. The objective of this study was to evaluate and compare the effect of TMEM106B on gray matter volume and cognition in each of the common genetic FTD groups and in patients with sporadic FTD. METHODS: Participants were enrolled through the ARTFL/LEFFTDS Longitudinal Frontotemporal Lobar Degeneration (ALLFTD) study, which includes symptomatic and presymptomatic individuals with a pathogenic variant in C9orf72, GRN, MAPT, VCP, TBK1, TARDBP, symptomatic nonpathogenic variant carriers, and noncarrier family controls. All participants were genotyped for the TMEM106B rs1990622 SNP. Cross-sectionally, linear mixed-effects models were fitted to assess an association between TMEM106B and genetic group interaction with each outcome measure (gray matter volume and UDS3-EF for cognition), adjusting for education, age, sex, and CDR+NACC-FTLD sum of boxes. Subsequently, associations between TMEM106B and each outcome measure were investigated within the genetic group. For longitudinal modeling, linear mixed-effects models with time by TMEM106B predictor interactions were fitted. RESULTS: The minor allele of TMEM106B rs1990622, linked to a decreased risk of FTD, associated with greater gray matter volume in GRN pathogenic variant carriers under the recessive dosage model (N = 82, beta = 3.25, 95% CI [0.37-6.19], p = 0.034). This was most pronounced in the thalamus in the left hemisphere (beta = 0.03, 95% CI [0.01-0.06], p = 0.006), with a retained association when considering presymptomatic GRN pathogenic variant carriers only (N = 42, beta = 0.03, 95% CI [0.01-0.05], p = 0.003). The minor allele of TMEM106B rs1990622 also associated with greater cognitive scores among all C9orf72 pathogenic variant carriers (N = 229, beta = 0.36, 95% CI [0.05-0.066], p = 0.021) and in presymptomatic C9orf72 pathogenic variant carriers (N = 106, beta = 0.33, 95% CI [0.03-0.63], p = 0.036), under the recessive dosage model. DISCUSSION: We identified associations of TMEM106B with gray matter volume and cognition in the presence of GRN and C9orf72 pathogenic variants. The association of TMEM106B with outcomes of interest in presymptomatic GRN and C9orf72 pathogenic variant carriers could additionally reflect TMEM106Bs effect on divergent pathophysiologic changes before the appearance of clinical symptoms.
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- 2024
5. Better cardiovascular health is associated with slowed clinical progression in autosomal dominant frontotemporal lobar degeneration variant carriers
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VandeBunte, Anna M, Lee, Hyunwoo, Paolillo, Emily W, Hsiung, Ging‐Yuek Robin, Staffaroni, Adam M, Saloner, Rowan, Tartaglia, Carmela, Yaffe, Kristine, Knopman, David S, Ramos, Eliana Marisa, Rascovsky, Katya, Bozoki, Andrea C, Wong, Bonnie, Domoto‐Reilly, Kimiko, Snyder, Allison, Pressman, Peter, Mendez, Mario F, Litvan, Irene, Fields, Julie A, Galasko, Douglas R, Darby, Ryan, Masdeu, Joseph C, Pasqual, Maria Belen, Honig, Lawrence S, Ghoshal, Nupur, Appleby, Brian S, Mackenzie, Ian R, Heuer, Hilary W, Kramer, Joel H, Boxer, Adam L, Forsberg, Leah K, Boeve, Brad, Rosen, Howard J, Casaletto, Kaitlin B, and Consortium, the ALLFTD
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Biological Psychology ,Biomedical and Clinical Sciences ,Psychology ,Cardiovascular ,Neurosciences ,Clinical Research ,Behavioral and Social Science ,Frontotemporal Dementia (FTD) ,Alzheimer's Disease Related Dementias (ADRD) ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Alzheimer's Disease ,Dementia ,Genetics ,Aging ,Brain Disorders ,Basic Behavioral and Social Science ,Neurodegenerative ,Prevention ,Acquired Cognitive Impairment ,2.1 Biological and endogenous factors ,Neurological ,Good Health and Well Being ,Humans ,Male ,Female ,Frontotemporal Lobar Degeneration ,Middle Aged ,Disease Progression ,Neuropsychological Tests ,Magnetic Resonance Imaging ,White Matter ,Heterozygote ,Aged ,Cognitive Dysfunction ,Brain ,Neuroimaging ,aging ,cardiovascular health ,frontotemporal dementia ,genetic dementia ,Life's Simple 7 ,lifestyle behaviors ,modifiable risk ,neuropsychology ,ALLFTD Consortium ,Clinical Sciences ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionCardiovascular health is important for brain aging, yet its role in the clinical manifestation of autosomal dominant or atypical forms of dementia has not been fully elucidated. We examined relationships between Life's Simple 7 (LS7) and clinical trajectories in individuals with autosomal dominant frontotemporal lobar degeneration (FTLD).MethodsTwo hundred forty-seven adults carrying FTLD pathogenic genetic variants (53% asymptomatic) and 189 non-carrier controls completed baseline LS7, and longitudinal neuroimaging and neuropsychological testing.ResultsAmong variant carriers, higher baseline LS7 is associated with slower accumulation of frontal white matter hyperintensities (WMHs), as well as slower memory and language declines. Higher baseline LS7 associated with larger baseline frontotemporal volume, but not frontotemporal volume trajectories.DiscussionBetter baseline cardiovascular health related to slower cognitive decline and accumulation of frontal WMHs in autosomal dominant FTLD. Optimizing cardiovascular health may be an important modifiable approach to bolster cognitive health and brain integrity in FTLD.HighlightsBetter cardiovascular health associates with slower cognitive decline in frontotemporal lobar degeneration (FTLD). Lifestyle relates to the accumulation of frontal white matter hyperintensities in FTLD. More optimal cardiovascular health associates with greater baseline frontotemporal lobe volume. Optimized cardiovascular health relates to more favorable outcomes in genetic dementia.
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- 2024
6. Frontotemporal lobar degeneration targets brain regions linked to expression of recently evolved genes
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Pasquini, Lorenzo, Pereira, Felipe L, Seddighi, Sahba, Zeng, Yi, Wei, Yongbin, Illán-Gala, Ignacio, Vatsavayai, Sarat C, Friedberg, Adit, Lee, Alex J, Brown, Jesse A, Spina, Salvatore, Grinberg, Lea T, Sirkis, Daniel W, Bonham, Luke W, Yokoyama, Jennifer S, Boxer, Adam L, Kramer, Joel H, Rosen, Howard J, Humphrey, Jack, Gitler, Aaron D, Miller, Bruce L, Pollard, Katherine S, Ward, Michael E, and Seeley, William W
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Biological Psychology ,Psychology ,Acquired Cognitive Impairment ,Neurodegenerative ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Genetics ,Brain Disorders ,Rare Diseases ,Alzheimer's Disease Related Dementias (ADRD) ,Frontotemporal Dementia (FTD) ,Alzheimer's Disease ,Dementia ,Aging ,Neurosciences ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Frontotemporal Lobar Degeneration ,Brain ,Male ,Female ,Aged ,DNA-Binding Proteins ,Middle Aged ,tau Proteins ,Atrophy ,Animals ,Evolution ,Molecular ,Gene Expression ,frontotemporal lobar degeneration ,cryptic exon ,human accelerated regions ,TDP-43 ,tau ,gene expression ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biomedical and clinical sciences ,Health sciences - Abstract
In frontotemporal lobar degeneration (FTLD), pathological protein aggregation in specific brain regions is associated with declines in human-specialized social-emotional and language functions. In most patients, disease protein aggregates contain either TDP-43 (FTLD-TDP) or tau (FTLD-tau). Here, we explored whether FTLD-associated regional degeneration patterns relate to regional gene expression of human accelerated regions (HARs), conserved sequences that have undergone positive selection during recent human evolution. To this end, we used structural neuroimaging from patients with FTLD and human brain regional transcriptomic data from controls to identify genes expressed in FTLD-targeted brain regions. We then integrated primate comparative genomic data to test our hypothesis that FTLD targets brain regions linked to expression levels of recently evolved genes. In addition, we asked whether genes whose expression correlates with FTLD atrophy are enriched for genes that undergo cryptic splicing when TDP-43 function is impaired. We found that FTLD-TDP and FTLD-tau subtypes target brain regions with overlapping and distinct gene expression correlates, highlighting many genes linked to neuromodulatory functions. FTLD atrophy-correlated genes were strongly enriched for HARs. Atrophy-correlated genes in FTLD-TDP showed greater overlap with TDP-43 cryptic splicing genes and genes with more numerous TDP-43 binding sites compared with atrophy-correlated genes in FTLD-tau. Cryptic splicing genes were enriched for HAR genes, and vice versa, but this effect was due to the confounding influence of gene length. Analyses performed at the individual-patient level revealed that the expression of HAR genes and cryptically spliced genes within putative regions of disease onset differed across FTLD-TDP subtypes. Overall, our findings suggest that FTLD targets brain regions that have undergone recent evolutionary specialization and provide intriguing potential leads regarding the transcriptomic basis for selective vulnerability in distinct FTLD molecular-anatomical subtypes.
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- 2024
7. Two-neutrino double electron capture of $^{124}$Xe in the first LUX-ZEPLIN exposure
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Bargemann, J. W., Barillier, E. E., Beattie, K., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Chin, Y. T., Chott, N. I., Converse, M. V., Coronel, R., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Di Felice, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Dubey, S., Eriksen, S. R., Fan, A., Fearon, N. M., Fieldhouse, N., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Haiston, J. J., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kannichankandy, M., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kim, Y. D., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Lippincott, W. H., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., McLaughlin, J. B., McMonigle, R., Mizrachi, E., Monte, A., Monzani, M. E., Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., O'Brien, C. L., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Oyulmaz, K. Y, Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Ritchey, E., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Sehr, G., Shafer, B., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Vacheret, A., Vaitkus, A. C., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Weeldreyer, L., Whitis, T. J., Wild, K., Williams, M., Wisniewski, W. J., Wolf, L., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xu, J., Xu, Y., Yeh, M., Yeum, D., Zha, W., and Zweig, E. A.
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Nuclear Experiment ,Physics - Instrumentation and Detectors - Abstract
The broad physics reach of the LUX-ZEPLIN (LZ) experiment covers rare phenomena beyond the direct detection of dark matter. We report precise measurements of the extremely rare decay of $^{124}$Xe through the process of two-neutrino double electron capture (2$\nu$2EC), utilizing a $1.39\,\mathrm{kg} \times \mathrm{yr}$ isotopic exposure from the first LZ science run. A half-life of $T_{1/2}^{2\nu2\mathrm{EC}} = (1.09 \pm 0.14_{\text{stat}} \pm 0.05_{\text{sys}}) \times 10^{22}\,\mathrm{yr}$ is observed with a statistical significance of $8.3\,\sigma$, in agreement with literature. First empirical measurements of the KK capture fraction relative to other K-shell modes were conducted, and demonstrate consistency with respect to recent signal models at the $1.4\,\sigma$ level., Comment: 15 pages, 3 figures
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- 2024
8. Probing the Scalar WIMP-Pion Coupling with the first LUX-ZEPLIN data
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Barillier, E. E., Bargemann, J. W., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E. J., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chin, Y. T., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., deViveiros, L., DiFelice, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., vanderGrinten, M. G. D., Haiston, J. J., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kannichankandy, M., Khaitan, D., Khazov, A., Khurana, I., DKim, J., Kim, J., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., McLaughlin, J. B., McMonigle, R., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Vacheret, A., Vaitkus, A. C., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., Yeh, M., and Zweig, E. A.
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High Energy Physics - Experiment - Abstract
Weakly interacting massive particles (WIMPs) may interact with a virtual pion that is exchanged between nucleons. This interaction channel is important to consider in models where the spin-independent isoscalar channel is suppressed. Using data from the first science run of the LUX-ZEPLIN dark matter experiment, containing 60 live days of data in a 5.5~tonne fiducial mass of liquid xenon, we report the results on a search for WIMP-pion interactions. We observe no significant excess and set an upper limit of $1.5\times10^{-46}$~cm$^2$ at a 90\% confidence level for a WIMP mass of 33~GeV/c$^2$ for this interaction.
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- 2024
- Full Text
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9. The design, implementation, and performance of the LZ calibration systems
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Aalbers, J, Akerib, DS, Al Musalhi, AK, Alder, F, Amarasinghe, CS, Ames, A, Anderson, TJ, Angelides, N, Araújo, HM, Armstrong, JE, Arthurs, M, Baker, A, Balashov, S, Bang, J, Barillier, EE, Bargemann, JW, Beattie, K, Benson, T, Bhatti, A, Biekert, A, Biesiadzinski, TP, Birch, HJ, Bishop, E, Blockinger, GM, Boxer, B, Brew, CAJ, Brás, P, Burdin, S, Buuck, M, Carmona-Benitez, MC, Carter, M, Chawla, A, Chen, H, Cherwinka, JJ, Chin, YT, Chott, NI, Converse, MV, Cottle, A, Cox, G, Curran, D, Dahl, CE, David, A, Delgaudio, J, Dey, S, de Viveiros, L, Di Felice, L, Ding, C, Dobson, JEY, Druszkiewicz, E, Eriksen, SR, Fan, A, Fearon, NM, Fieldhouse, N, Fiorucci, S, Flaecher, H, Fraser, ED, Fruth, TMA, Gaitskell, RJ, Geffre, A, Genovesi, J, Ghag, C, Gibbons, R, Gokhale, S, Green, J, van der Grinten, MGD, Haiston, JJ, Hall, CR, Han, S, Hartigan-O'Connor, E, Haselschwardt, SJ, Hernandez, MA, Hertel, SA, Heuermann, G, Homenides, GJ, Horn, M, Huang, DQ, Hunt, D, Jacquet, E, James, RS, Johnson, J, Kaboth, AC, Kamaha, AC, Kannichankandy, M, Khaitan, D, Khazov, A, Khurana, I, Kim, J, Kim, YD, Kingston, J, Kirk, R, Kodroff, D, Korley, L, Korolkova, EV, Kraus, H, Kravitz, S, Kreczko, L, Kudryavtsev, VA, Leonard, DS, Lesko, KT, and Levy, C
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Nuclear and Plasma Physics ,Particle and High Energy Physics ,Physical Sciences ,Engineering ,Nuclear & Particles Physics ,Physical sciences - Abstract
LUX-ZEPLIN (LZ) is a tonne-scale experiment searching for direct dark matter interactions and other rare events. It is located at the Sanford Underground Research Facility (SURF) in Lead, South Dakota, USA. The core of the LZ detector is a dual-phase xenon time projection chamber (TPC), designed with the primary goal of detecting Weakly Interacting Massive Particles (WIMPs) via their induced low energy nuclear recoils. Surrounding the TPC, two veto detectors immersed in an ultra-pure water tank enable reducing background events to enhance the discovery potential. Intricate calibration systems are purposely designed to precisely understand the responses of these three detector volumes to various types of particle interactions and to demonstrate LZ’s ability to discriminate between signals and backgrounds. In this paper, we present a comprehensive discussion of the key features, requirements, and performance of the LZ calibration systems, which play a crucial role in enabling LZ’s WIMP-search and its broad science program. The thorough description of these calibration systems, with an emphasis on their novel aspects, is valuable for future calibration efforts in direct dark matter and other rare-event search experiments.
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- 2024
10. Investigating resource-efficient neutron/gamma classification ML models targeting eFPGAs
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Johnson, Jyothisraj, Boxer, Billy, Prakash, Tarun, Grace, Carl, Sorensen, Peter, and Tripathi, Mani
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Nuclear and Plasma Physics ,Engineering ,Electrical Engineering ,Electronics ,Sensors and Digital Hardware ,Physical Sciences ,Networking and Information Technology R&D (NITRD) ,Machine Learning and Artificial Intelligence ,Nuclear & Particles Physics ,Physical sciences - Abstract
There has been considerable interest and resulting progress in implementing machine learning (ML) models in hardware over the last several years from the particle and nuclear physics communities. A big driver has been the release of the Python package, hls4ml, which has enabled porting models specified and trained using Python ML libraries to register transfer level (RTL) code. So far, the primary end targets have been commercial field-programmable gate arrays (FPGAs) or synthesized custom blocks on application specific integrated circuits (ASICs). However, recent developments in open-source embedded FPGA (eFPGA) frameworks now provide an alternate, more flexible pathway for implementing ML models in hardware. These customized eFPGA fabrics can be integrated as part of an overall chip design. In general, the decision between a fully custom, eFPGA, or commercial FPGA ML implementation will depend on the details of the end-use application. In this work, we explored the parameter space for eFPGA implementations of fully-connected neural network (fcNN) and boosted decision tree (BDT) models using the task of neutron/gamma classification with a specific focus on resource efficiency. We used data collected using an AmBe sealed source incident on Stilbene, which was optically coupled to an OnSemi J-series silicon photomultiplier (SiPM) to generate training and test data for this study. We investigated relevant input features and the effects of bit-resolution and sampling rate as well as trade-offs in hyperparameters for both ML architectures while tracking total resource usage. The performance metric used to track model performance was the calculated neutron efficiency at a gamma leakage of 10-3. The results of the study will be used to aid the specification of an eFPGA fabric, which will be integrated as part of a test chip.
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- 2024
11. Comorbid neuropathology and atypical presentation of Alzheimer's disease
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Pina‐Escudero, Stefanie D, La Joie, Renaud, Spina, Salvatore, Hwang, Ji‐Hye, Miller, Zachary A, Huang, Eric J, Grant, Harli, Mundada, Nidhi S, Boxer, Adam L, Gorno‐Tempini, Maria Luisa, Rosen, Howard J, Kramer, Joel H, Miller, Bruce L, Seeley, William W, Rabinovici, Gil D, and Grinberg, Lea Tenenholz
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Biological Psychology ,Psychology ,Acquired Cognitive Impairment ,Neurodegenerative ,Neurosciences ,Brain Disorders ,Alzheimer's Disease ,Dementia ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Aging ,2.1 Biological and endogenous factors ,4.1 Discovery and preclinical testing of markers and technologies ,Neurological ,atypical Alzheimer's disease ,clinicopathological correlation ,comorbidities ,neuropathology ,post mortem ,selective vulnerability ,Genetics ,Biological psychology - Abstract
IntroductionAlzheimer's disease (AD) neuropathological changes present with amnestic and nonamnestic (atypical) syndromes. The contribution of comorbid neuropathology as a substratum of atypical expression of AD remains under investigated.MethodsWe examined whether atypical AD exhibited increased comorbid neuropathology compared to typical AD and if such neuropathologies contributed to the accelerated clinical decline in atypical AD.ResultsWe examined 60 atypical and 101 typical AD clinicopathological cases. The number of comorbid pathologies was similar between the groups (p = 0.09). Argyrophilic grain disease was associated with atypical presentation (p = 0.008) after accounting for sex, age of onset, and disease duration. Vascular brain injury was more common in typical AD (p = 0.022). Atypical cases had a steeper Mini-Mental Status Examination (MMSE) decline over time (p = 0.033).DiscussionComorbid neuropathological changes are unlikely to contribute to atypical AD presentation and the steeper cognitive decline seen in this cohort.HighlightsAutopsy cohort of 60 atypical and 101 typical AD; does comorbid pathology explain atypical presentation?Atypical versus Typical AD: No significant differences in comorbid neuropathologies were found (p = 0.09).Argyrophilic Grain Disease Association: significantly correlates with atypical AD presentations, suggesting a unique neuropathological pattern (p = 0.008).Vascular Brain Injury Prevalence: Vascular brain injury is more common in typical AD than in atypical AD (p = 0.022).Cognitive Decline in Atypical AD: Atypical AD patients experience a steeper cognitive decline measured by MMSE than those with typical AD despite lacking more comorbid neuropathology, highlighting the severity of atypical AD pathogenesis (p = 0.033).
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- 2024
12. New constraints on ultraheavy dark matter from the LZ experiment
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Aalbers, J, Akerib, DS, Al Musalhi, AK, Alder, F, Amarasinghe, CS, Ames, A, Anderson, TJ, Angelides, N, Araújo, HM, Armstrong, JE, Arthurs, M, Baker, A, Balashov, S, Bang, J, Barillier, EE, Bargemann, JW, Baxter, A, Beattie, K, Benson, T, Bhatti, A, Biekert, A, Biesiadzinski, TP, Birch, HJ, Bishop, EJ, Blockinger, GM, Boxer, B, Brew, CAJ, Brás, P, Burdin, S, Buuck, M, Carmona-Benitez, MC, Carter, M, Chawla, A, Chen, H, Cherwinka, JJ, Chin, YT, Chott, NI, Converse, MV, Cottle, A, Cox, G, Curran, D, Dahl, CE, David, A, Delgaudio, J, Dey, S, de Viveiros, L, Di Felice, L, Ding, C, Dobson, JEY, Druszkiewicz, E, Eriksen, SR, Fan, A, Fearon, NM, Fiorucci, S, Flaecher, H, Fraser, ED, Fruth, TMA, Gaitskell, RJ, Geffre, A, Genovesi, J, Ghag, C, Gibbons, R, Gokhale, S, Green, J, van der Grinten, MGD, Haiston, JH, Hall, CR, Han, S, Hartigan-O’Connor, E, Haselschwardt, SJ, Hernandez, MA, Hertel, SA, Heuermann, G, Homenides, GJ, Horn, M, Huang, DQ, Hunt, D, Ignarra, CM, Jacquet, E, James, RS, Johnson, J, Kaboth, AC, Kamaha, AC, Kannichankandy, M, Khaitan, D, Khazov, A, Khurana, I, Kim, J, Kingston, J, Kirk, R, Kodroff, D, Korley, L, Korolkova, EV, Kraus, H, Kravitz, S, Kreczko, L, Krikler, B, Kudryavtsev, VA, Lee, J, and Leonard, DS
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Nuclear and Plasma Physics ,Particle and High Energy Physics ,Physical Sciences - Abstract
Searches for dark matter with liquid xenon time projection chamber experiments have traditionally focused on the region of the parameter space that is characteristic of weakly interacting massive particles, ranging from a few GeV/c2 to a few TeV/c2. Models of dark matter with a mass much heavier than this are well motivated by early production mechanisms different from the standard thermal freeze-out, but they have generally been less explored experimentally. In this work, we present a reanalysis of the first science run of the LZ experiment, with an exposure of 0.9 tonne×yr, to search for ultraheavy particle dark matter. The signal topology consists of multiple energy deposits in the active region of the detector forming a straight line, from which the velocity of the incoming particle can be reconstructed on an event-by-event basis. Zero events with this topology were observed after applying the data selection calibrated on a simulated sample of signal-like events. New experimental constraints are derived, which rule out previously unexplored regions of the dark matter parameter space of spin-independent interactions beyond a mass of 1017 GeV/c2.
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- 2024
13. The Data Acquisition System of the LZ Dark Matter Detector: FADR
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Barillier, E. E., Bargemann, J. W., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Buckley, J. H., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chin, Y. T., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Di Felice, L., Dimino, T., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fieldhouse, N., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Gelfand, R., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Haiston, J. J., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kannichankandy, M., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kim, Y. D., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Koyuncu, M., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Loniewski, C., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., Mclaughlin, J. B., McMonigle, R., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Moongweluwan, M., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Oh, H., Olcina, I., Olevitch, M. A., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sarkis, R., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Skulski, W., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Vacheret, A., Vaitkus, A. C., Vaitkus, J., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Wolfs, J. D., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., Yeh, M., and Yin, J.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
The Data Acquisition System (DAQ) for the LUX-ZEPLIN (LZ) dark matter detector is described. The signals from 745 PMTs, distributed across three subsystems, are sampled with 100-MHz 32-channel digitizers (DDC-32s). A basic waveform analysis is carried out on the on-board Field Programmable Gate Arrays (FPGAs) to extract information about the observed scintillation and electroluminescence signals. This information is used to determine if the digitized waveforms should be preserved for offline analysis. The system is designed around the Kintex-7 FPGA. In addition to digitizing the PMT signals and providing basic event selection in real time, the flexibility provided by the use of FPGAs allows us to monitor the performance of the detector and the DAQ in parallel to normal data acquisition. The hardware and software/firmware of this FPGA-based Architecture for Data acquisition and Realtime monitoring (FADR) are discussed and performance measurements are described., Comment: 18 pages, 24 figures
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- 2024
14. Can Large Language Models Make the Grade? An Empirical Study Evaluating LLMs Ability to Mark Short Answer Questions in K-12 Education
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Henkel, Owen, Boxer, Adam, Hills, Libby, and Roberts, Bill
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
This paper presents reports on a series of experiments with a novel dataset evaluating how well Large Language Models (LLMs) can mark (i.e. grade) open text responses to short answer questions, Specifically, we explore how well different combinations of GPT version and prompt engineering strategies performed at marking real student answers to short answer across different domain areas (Science and History) and grade-levels (spanning ages 5-16) using a new, never-used-before dataset from Carousel, a quizzing platform. We found that GPT-4, with basic few-shot prompting performed well (Kappa, 0.70) and, importantly, very close to human-level performance (0.75). This research builds on prior findings that GPT-4 could reliably score short answer reading comprehension questions at a performance-level very close to that of expert human raters. The proximity to human-level performance, across a variety of subjects and grade levels suggests that LLMs could be a valuable tool for supporting low-stakes formative assessment tasks in K-12 education and has important implications for real-world education delivery.
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- 2024
15. The Design, Implementation, and Performance of the LZ Calibration Systems
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Barillier, E. E., Bargemann, J. W., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chin, Y. T., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Di Felice, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fieldhouse, N., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Haiston, J. J., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kannichankandy, M., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kim, Y. D., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., Mclaughlin, J. B., McMonigle, R., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Vacheret, A., Vaitkus, A. C., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., and Yeh, M.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
LUX-ZEPLIN (LZ) is a tonne-scale experiment searching for direct dark matter interactions and other rare events. It is located at the Sanford Underground Research Facility (SURF) in Lead, South Dakota, USA. The core of the LZ detector is a dual-phase xenon time projection chamber (TPC), designed with the primary goal of detecting Weakly Interacting Massive Particles (WIMPs) via their induced low energy nuclear recoils. Surrounding the TPC, two veto detectors immersed in an ultra-pure water tank enable reducing background events to enhance the discovery potential. Intricate calibration systems are purposely designed to precisely understand the responses of these three detector volumes to various types of particle interactions and to demonstrate LZ's ability to discriminate between signals and backgrounds. In this paper, we present a comprehensive discussion of the key features, requirements, and performance of the LZ calibration systems, which play a crucial role in enabling LZ's WIMP-search and its broad science program. The thorough description of these calibration systems, with an emphasis on their novel aspects, is valuable for future calibration efforts in direct dark matter and other rare-event search experiments.
- Published
- 2024
- Full Text
- View/download PDF
16. Constraints On Covariant WIMP-Nucleon Effective Field Theory Interactions from the First Science Run of the LUX-ZEPLIN Experiment
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Barillier, E. E., Bargemann, J. W., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E. J., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chin, Y. T., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Di Felice, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Haiston, J. H., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hernandez, M. A., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Ignarra, C. M., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kannichankandy, M., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Lee, J., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Lopes, M. I., Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., McLaughlin, J. B., McMonigle, R., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Siniscalco, J., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Vacheret, A., Vaitkus, A. C., Valentino, O., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., Yeh, M., and Zweig, E. A.
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High Energy Physics - Experiment - Abstract
The first science run of the LUX-ZEPLIN (LZ) experiment, a dual-phase xenon time project chamber operating in the Sanford Underground Research Facility in South Dakota, USA, has reported leading limits on spin-independent WIMP-nucleon interactions and interactions described from a non-relativistic effective field theory (NREFT). Using the same 5.5~t fiducial mass and 60 live days of exposure we report on the results of a relativistic extension to the NREFT. We present constraints on couplings from covariant interactions arising from the coupling of vector, axial currents, and electric dipole moments of the nucleon to the magnetic and electric dipole moments of the WIMP which cannot be described by recasting previous results described by an NREFT. Using a profile-likelihood ratio analysis, in an energy region between 0~keV$_\text{nr}$ to 270~keV$_\text{nr}$, we report 90% confidence level exclusion limits on the coupling strength of five interactions in both the isoscalar and isovector bases., Comment: 7 pages, 4 figures
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- 2024
17. Biosignatures from pre-oxygen photosynthesising life on TRAPPIST-1e
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Eager-Nash, Jake K., Daines, Stuart J., McDermott, James W., Andrews, Peter, Grain, Lucy A., Bishop, James, Rogers, Aaron A., Smith, Jack W. G., Khalek, Chadiga, Boxer, Thomas J., Mak, Mei Ting, Ridgway, Robert J., Hebrard, Eric, Lambert, F. Hugo, Lenton, Timothy M., and Mayne, Nathan J.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
In order to assess observational evidence for potential atmospheric biosignatures on exoplanets, it will be essential to test whether spectral fingerprints from multiple gases can be explained by abiotic or biotic-only processes. Here, we develop and apply a coupled 1D atmosphere-ocean-ecosystem model to understand how primitive biospheres, which exploit abiotic sources of H2, CO and O2, could influence the atmospheric composition of rocky terrestrial exoplanets. We apply this to the Earth at 3.8 Ga and to TRAPPIST-1e. We focus on metabolisms that evolved before the evolution of oxygenic photosynthesis, which consume H2 and CO and produce potentially detectable levels of CH4. O2-consuming metabolisms are also considered for TRAPPIST-1e, as abiotic O2 production is predicted on M-dwarf orbiting planets. We show that these biospheres can lead to high levels of surface O2 (approximately 1-5 %) as a result of \ch{CO} consumption, which could allow high O2 scenarios, by removing the main loss mechanisms of atomic oxygen. Increasing stratospheric temperatures, which increases atmospheric OH can reduce the likelihood of such a state forming. O2-consuming metabolisms could also lower O2 levels to around 10 ppm and support a productive biosphere at low reductant inputs. Using predicted transmission spectral features from CH4, CO, O2/O3 and CO2 across the hypothesis space for tectonic reductant input, we show that biotically-produced CH4 may only be detectable at high reductant inputs. CO is also likely to be a dominant feature in transmission spectra for planets orbiting M-dwarfs, which could reduce the confidence in any potential biosignature observations linked to these biospheres., Comment: 29 pages, 19 figures
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- 2024
18. New constraints on ultraheavy dark matter from the LZ experiment
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Bargemann, J. W., Baxter, A., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Ignarra, C. M., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Krikler, B., Kudryavtsev, V. A., Lee, J., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Lopes, M. I., Asamar, E. Lopez, Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., McMonigle, R., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nedlik, C., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Pannifer, N. J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Turner, W., Vacheret, A., Vaitkus, A. C., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., Yeh, M., and Zweig, E. A.
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High Energy Physics - Experiment ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Searches for dark matter with liquid xenon time projection chamber experiments have traditionally focused on the region of the parameter space that is characteristic of weakly interacting massive particles, ranging from a few GeV/$c^2$ to a few TeV/$c^2$. Models of dark matter with a mass much heavier than this are well motivated by early production mechanisms different from the standard thermal freeze-out, but they have generally been less explored experimentally. In this work, we present a re-analysis of the first science run (SR1) of the LZ experiment, with an exposure of $0.9$ tonne$\times$year, to search for ultraheavy particle dark matter. The signal topology consists of multiple energy deposits in the active region of the detector forming a straight line, from which the velocity of the incoming particle can be reconstructed on an event-by-event basis. Zero events with this topology were observed after applying the data selection calibrated on a simulated sample of signal-like events. New experimental constraints are derived, which rule out previously unexplored regions of the dark matter parameter space of spin-independent interactions beyond a mass of 10$^{17}$ GeV/$c^2$., Comment: 9 pages, 7 figures
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- 2024
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19. Molecular neuroimaging in dominantly inherited versus sporadic early-onset Alzheimer’s disease
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Iaccarino, Leonardo, Llibre-Guerra, Jorge J, McDade, Eric, Edwards, Lauren, Gordon, Brian, Benzinger, Tammie, Hassenstab, Jason, Kramer, Joel H, Li, Yan, Miller, Bruce L, Miller, Zachary, Morris, John C, Mundada, Nidhi, Perrin, Richard J, Rosen, Howard J, Soleimani-Meigooni, David, Strom, Amelia, Tsoy, Elena, Wang, Guoqiao, Xiong, Chengjie, Allegri, Ricardo, Chrem, Patricio, Vazquez, Silvia, Berman, Sarah B, Chhatwal, Jasmeer, Masters, Colin L, Farlow, Martin R, Jucker, Mathias, Levin, Johannes, Salloway, Stephen, Fox, Nick C, Day, Gregory S, Gorno-Tempini, Maria Luisa, Boxer, Adam L, La Joie, Renaud, Bateman, Randall, and Rabinovici, Gil D
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Biomedical and Clinical Sciences ,Biological Psychology ,Clinical Sciences ,Neurosciences ,Psychology ,Acquired Cognitive Impairment ,Brain Disorders ,Dementia ,Biomedical Imaging ,Clinical Research ,Neurodegenerative ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Aging ,Alzheimer's Disease ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Good Health and Well Being ,Alzheimer's disease ,amyloid-PET ,brain glucose metabolism ,FDG-PET ,Alzheimer’s disease ,Clinical sciences ,Biological psychology - Abstract
Approximately 5% of Alzheimer's disease patients develop symptoms before age 65 (early-onset Alzheimer's disease), with either sporadic (sporadic early-onset Alzheimer's disease) or dominantly inherited (dominantly inherited Alzheimer's disease) presentations. Both sporadic early-onset Alzheimer's disease and dominantly inherited Alzheimer's disease are characterized by brain amyloid-β accumulation, tau tangles, hypometabolism and neurodegeneration, but differences in topography and magnitude of these pathological changes are not fully elucidated. In this study, we directly compared patterns of amyloid-β plaque deposition and glucose hypometabolism in sporadic early-onset Alzheimer's disease and dominantly inherited Alzheimer's disease individuals. Our analysis included 134 symptomatic sporadic early-onset Alzheimer's disease amyloid-Positron Emission Tomography (PET)-positive cases from the University of California, San Francisco, Alzheimer's Disease Research Center (mean ± SD age 59.7 ± 5.6 years), 89 symptomatic dominantly inherited Alzheimer's disease cases (age 45.8 ± 9.3 years) and 102 cognitively unimpaired non-mutation carriers from the Dominantly Inherited Alzheimer Network study (age 44.9 ± 9.2). Each group underwent clinical and cognitive examinations, 11C-labelled Pittsburgh Compound B-PET and structural MRI. 18F-Fluorodeoxyglucose-PET was also available for most participants. Positron Emission Tomography scans from both studies were uniformly processed to obtain a standardized uptake value ratio (PIB50-70 cerebellar grey reference and FDG30-60 pons reference) images. Statistical analyses included pairwise global and voxelwise group comparisons and group-independent component analyses. Analyses were performed also adjusting for covariates including age, sex, Mini-Mental State Examination, apolipoprotein ε4 status and average composite cortical of standardized uptake value ratio. Compared with dominantly inherited Alzheimer's disease, sporadic early-onset Alzheimer's disease participants were older at age of onset (mean ± SD, 54.8 ± 8.2 versus 41.9 ± 8.2, Cohen's d = 1.91), with more years of education (16.4 ± 2.8 versus 13.5 ± 3.2, d = 1) and more likely to be apolipoprotein ε4 carriers (54.6% ε4 versus 28.1%, Cramer's V = 0.26), but similar Mini-Mental State Examination (20.6 ± 6.1 versus 21.2 ± 7.4, d = 0.08). Sporadic early-onset Alzheimer's disease had higher global cortical Pittsburgh Compound B-PET binding (mean ± SD standardized uptake value ratio, 1.92 ± 0.29 versus 1.58 ± 0.44, d = 0.96) and greater global cortical 18F-fluorodeoxyglucose-PET hypometabolism (mean ± SD standardized uptake value ratio, 1.32 ± 0.1 versus 1.39 ± 0.19, d = 0.48) compared with dominantly inherited Alzheimer's disease. Fully adjusted comparisons demonstrated relatively higher Pittsburgh Compound B-PET standardized uptake value ratio in the medial occipital, thalami, basal ganglia and medial/dorsal frontal regions in dominantly inherited Alzheimer's disease versus sporadic early-onset Alzheimer's disease. Sporadic early-onset Alzheimer's disease showed relatively greater 18F-fluorodeoxyglucose-PET hypometabolism in Alzheimer's disease signature temporoparietal regions and caudate nuclei, whereas dominantly inherited Alzheimer's disease showed relatively greater hypometabolism in frontal white matter and pericentral regions. Independent component analyses largely replicated these findings by highlighting common and unique Pittsburgh Compound B-PET and 18F-fluorodeoxyglucose-PET binding patterns. In summary, our findings suggest both common and distinct patterns of amyloid and glucose hypometabolism in sporadic and dominantly inherited early-onset Alzheimer's disease.
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- 2024
20. Clinicopathological correlation of cerebrospinal fluid alpha‐synuclein seed amplification assay in a behavioral neurology autopsy cohort
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Samudra, Niyatee, Fischer, D Luke, Lenio, Steven, Lago, Argentina Lario, Ljubenkov, Peter A, Rojas, Julio C, Seeley, William W, Spina, Salvatore, Staffaroni, Adam M, Tablante, Jonathan, Wekselman, Fattin, Lamoureux, Jennifer, Concha‐Marambio, Luis, Grinberg, Lea T, Boxer, Adam L, and VandeVrede, Lawren
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Biomedical and Clinical Sciences ,Clinical Sciences ,Brain Disorders ,Acquired Cognitive Impairment ,Neurosciences ,Neurodegenerative ,Dementia ,4.2 Evaluation of markers and technologies ,Detection ,screening and diagnosis ,Neurological ,Humans ,alpha-Synuclein ,Lewy Body Disease ,Female ,Male ,Aged ,Autopsy ,Sensitivity and Specificity ,Cohort Studies ,Amygdala ,Aged ,80 and over ,Biomarkers ,Middle Aged ,alpha synuclein ,cerebrospinal fluid ,dementia with Lewy bodies ,Lewy body disease ,seed amplification assay ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionLewy body disease (LBD) is a common primary or co-pathology in neurodegenerative syndromes. An alpha-synuclein seed amplification assay (αSyn-SAA) is clinically available, but clinical performance, especially lower sensitivity in amygdala-predominant cases, is not well understood.MethodsAntemortem CSF from neuropathology-confirmed LBD cases was tested with αSyn-SAA (N = 56). Diagnostic performance and clinicopathological correlations were examined.ResultsSimilar to prior reports, sensitivity was 100% for diffuse and transitional LBD (9/9), and overall specificity was 96.3% (26/27). Sensitivity was lower in amygdala-predominant (6/14, 42.8%) and brainstem-predominant LBD (1/6, 16.7%), but early spread outside these regions (without meeting criteria for higher stage) was more common in αSyn-SAA-positive cases (6/7, 85.7%) than negative (2/13, 15.4%).DiscussionIn this behavioral neurology cohort, αSyn-SAA had excellent diagnostic performance for cortical LBD. In amygdala- and brainstem-predominant cases, sensitivity was lower, but positivity was associated with anatomical spread, suggesting αSyn-SAA detects early LBD progression in these cohorts.HighlightsA cerebrospinal fluid alpha-synuclein assay detects cortical LBD with high sensitivity/specificity. Positivity in prodromal stages of LBD was associated with early cortical spread. The assay provides precision diagnosis of LBD that could support clinical trials. The assay can also identify LBD co-pathology, which may impact treatment responses.
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- 2024
21. First constraints on WIMP-nucleon effective field theory couplings in an extended energy region from LUX-ZEPLIN
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Aalbers, J, Akerib, DS, Al Musalhi, AK, Alder, F, Amarasinghe, CS, Ames, A, Anderson, TJ, Angelides, N, Araújo, HM, Armstrong, JE, Arthurs, M, Baker, A, Balashov, S, Bang, J, Bargemann, JW, Baxter, A, Beattie, K, Benson, T, Bhatti, A, Biekert, A, Biesiadzinski, TP, Birch, HJ, Bishop, E, Blockinger, GM, Boxer, B, Brew, CAJ, Brás, P, Burdin, S, Buuck, M, Carmona-Benitez, MC, Carter, M, Chawla, A, Chen, H, Cherwinka, JJ, Chott, NI, Converse, MV, Cottle, A, Cox, G, Curran, D, Dahl, CE, David, A, Delgaudio, J, Dey, S, de Viveiros, L, Ding, C, Dobson, JEY, Druszkiewicz, E, Eriksen, SR, Fan, A, Fearon, NM, Fiorucci, S, Flaecher, H, Fraser, ED, Fruth, TMA, Gaitskell, RJ, Geffre, A, Genovesi, J, Ghag, C, Gibbons, R, Gokhale, S, Green, J, van der Grinten, MGD, Hall, CR, Han, S, Hartigan-O’Connor, E, Haselschwardt, SJ, Hernandez, MA, Hertel, SA, Heuermann, G, Homenides, GJ, Horn, M, Huang, DQ, Hunt, D, Ignarra, CM, Jacquet, E, James, RS, Johnson, J, Kaboth, AC, Kamaha, AC, Khaitan, D, Khazov, A, Khurana, I, Kim, J, Kingston, J, Kirk, R, Kodroff, D, Korley, L, Korolkova, EV, Kraus, H, Kravitz, S, Kreczko, L, Krikler, B, Kudryavtsev, VA, Lee, J, Leonard, DS, Lesko, KT, Levy, C, Lin, J, Lindote, A, and Linehan, R
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Nuclear and Plasma Physics ,Particle and High Energy Physics ,Physical Sciences ,Affordable and Clean Energy - Abstract
Following the first science results of the LUX-ZEPLIN (LZ) experiment, a dual-phase xenon time projection chamber operating from the Sanford Underground Research Facility in Lead, South Dakota, USA, we report the initial limits on a model-independent nonrelativistic effective field theory describing the complete set of possible interactions of a weakly interacting massive particle (WIMP) with a nucleon. These results utilize the same 5.5 t fiducial mass and 60 live days of exposure collected for the LZ spin-independent and spin-dependent analyses while extending the upper limit of the energy region of interest by a factor of 7.5 to 270 keV. No significant excess in this high energy region is observed. Using a profile-likelihood ratio analysis, we report 90% confidence level exclusion limits on the coupling of each individual nonrelativistic WIMP-nucleon operator for both elastic and inelastic interactions in the isoscalar and isovector bases.
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- 2024
22. Association Between Preoperative Delirium and Plasma Biomarkers of Neuropathology Following Acute Hip Fracture: Hip Fracture Inpatient Pathophysiology Study (HIPS) Pilot (P8-15.002)
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Berry, Ketura, Youn, Joy, Rojas-Martinez, Julio, VandeVrede, Lawren, Castro, David, Diaz, Stephanie Roa, Garcia, Thelma, Degesys, Nida, Boscardin, John, Covinsky, Kenneth, Rogers, Stephanie, Newman, John, Miller, Bruce, Boxer, Adam, Douglas, Vanja, and LaHue, Sara
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Biomedical and Clinical Sciences ,Clinical Sciences ,Neurosciences ,Cognitive Sciences ,Neurology & Neurosurgery ,Clinical sciences - Published
- 2024
23. Clinical dimensions along the non-fluent variant primary progressive aphasia spectrum
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Illán-Gala, Ignacio, Lorca-Puls, Diego L, Tee, Boon Lead, Ezzes, Zoe, de Leon, Jessica, Miller, Zachary A, Rubio-Guerra, Sara, Santos-Santos, Miguel, Gómez-Andrés, David, Grinberg, Lea T, Spina, Salvatore, Kramer, Joel H, Wauters, Lisa D, Henry, Maya L, Boxer, Adam L, Rosen, Howard J, Miller, Bruce L, Seeley, William W, Mandelli, Maria Luisa, and Gorno-Tempini, Maria Luisa
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Biological Psychology ,Psychology ,Aphasia ,Neurodegenerative ,Neurosciences ,Brain Disorders ,Clinical Research ,2.1 Biological and endogenous factors ,Aetiology ,Humans ,Aphasia ,Broca ,Dysarthria ,Apraxias ,Language ,Speech ,Aphasia ,Primary Progressive ,Primary Progressive Nonfluent Aphasia ,apraxia of speech ,dysarthria ,primary progressive aphasia ,corticobasal degeneration ,progressive supranuclear palsy ,magnetic resonance imaging ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biomedical and clinical sciences ,Health sciences - Abstract
It is debated whether primary progressive apraxia of speech (PPAOS) and progressive agrammatic aphasia (PAA) belong to the same clinical spectrum, traditionally termed non-fluent/agrammatic variant primary progressive aphasia (nfvPPA), or exist as two completely distinct syndromic entities with specific pathologic/prognostic correlates. We analysed speech, language and disease severity features in a comprehensive cohort of patients with progressive motor speech impairment and/or agrammatism to ascertain evidence of naturally occurring, clinically meaningful non-overlapping syndromic entities (e.g. PPAOS and PAA) in our data. We also assessed if data-driven latent clinical dimensions with aetiologic/prognostic value could be identified. We included 98 participants, 43 of whom had an autopsy-confirmed neuropathological diagnosis. Speech pathologists assessed motor speech features indicative of dysarthria and apraxia of speech (AOS). Quantitative expressive/receptive agrammatism measures were obtained and compared with healthy controls. Baseline and longitudinal disease severity was evaluated using the Clinical Dementia Rating Sum of Boxes (CDR-SB). We investigated the data's clustering tendency and cluster stability to form robust symptom clusters and employed principal component analysis to extract data-driven latent clinical dimensions (LCD). The longitudinal CDR-SB change was estimated using linear mixed-effects models. Of the participants included in this study, 93 conformed to previously reported clinical profiles (75 with AOS and agrammatism, 12 PPAOS and six PAA). The remaining five participants were characterized by non-fluent speech, executive dysfunction and dysarthria without apraxia of speech or frank agrammatism. No baseline clinical features differentiated between frontotemporal lobar degeneration neuropathological subgroups. The Hopkins statistic demonstrated a low cluster tendency in the entire sample (0.45 with values near 0.5 indicating random data). Cluster stability analyses showed that only two robust subgroups (differing in agrammatism, executive dysfunction and overall disease severity) could be identified. Three data-driven components accounted for 71% of the variance [(i) severity-agrammatism; (ii) prominent AOS; and (iii) prominent dysarthria]. None of these data-driven LCDs allowed an accurate prediction of neuropathology. The severity-agrammatism component was an independent predictor of a faster CDR-SB increase in all the participants. Higher dysarthria severity, reduced words per minute and expressive and receptive agrammatism severity at baseline independently predicted accelerated disease progression. Our findings indicate that PPAOS and PAA, rather than exist as completely distinct syndromic entities, constitute a clinical continuum. In our cohort, splitting the nfvPPA spectrum into separate clinical phenotypes did not improve clinical-pathological correlations, stressing the need for new biological markers and consensus regarding updated terminology and clinical classification.
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- 2024
24. Whole genome‐wide sequence analysis of long‐lived families (Long‐Life Family Study) identifies MTUS2 gene associated with late‐onset Alzheimer's disease
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Xicota, Laura, Cosentino, Stephanie, Vardarajan, Badri, Mayeux, Richard, Perls, Thomas T, Andersen, Stacy L, Zmuda, Joseph M, Thyagarajan, Bharat, Yashin, Anatoli, Wojczynski, Mary K, Krinsky‐McHale, Sharon, Handen, Benjamin L, Christian, Bradley T, Head, Elizabeth, Mapstone, Mark E, Schupf, Nicole, Lee, Joseph H, Barral, Sandra, Study, the Long‐Life Family, Abner, Erin, Adams, Perrie M, Aguirre, Alyssa, Albert, Marilyn S, Albin, Roger L, Allen, Mariet, Alvarez, Lisa, Andrews, Howard, Apostolova, Liana G, Arnold, Steven E, Asthana, Sanjay, Atwood, Craig S, Ayres, Gayle, Barber, Robert C, Barnes, Lisa L, Bartlett, Jackie, Beach, Thomas G, Becker, James T, Beecham, Gary W, Benchek, Penelope, Bennett, David A, Bertelson, John, Biber, Sarah A, Bird, Thomas D, Blacker, Deborah, Boeve, Bradley F, Bowen, James D, Boxer, Adam, Brewer, James B, Burke, James R, Burns, Jeffrey M, Bush, William S, Buxbaum, Joseph D, Byrd, Goldie, Cantwell, Laura B, Cao, Chuanhai, Carlsson, Cynthia M, Carrasquillo, Minerva M, Chan, Kwun C, Chasse, Scott, Chen, Yen‐Chi, Chesselet, Marie‐Francoise, Chin, Nathaniel A, Chui, Helena C, Chung, Jaeyoon, Craft, Suzanne, Crane, Paul K, Cranney, Marissa, Cruchaga, Carlos, Cuccaro, Michael L, Culhane, Jessica, Cullum, C Munro, Darby, Eveleen, Davis, Barbara, De Jager, Philip L, DeCarli, Charles, DeToledo, John C, Dickson, Dennis W, Dobbins, Nic, Duara, Ranjan, Ertekin‐Taner, Nilufer, Evans, Denis A, Faber, Kelley M, Fairchild, Thomas J, Fallin, Daniele, Fallon, Kenneth B, Fardo, David W, Farlow, Martin R, Farrell, John, Farrer, Lindsay A, Fernandez‐Hernandez, Victoria, Foroud, Tatiana M, Frosch, Matthew P, Galasko, Douglas R, Gamboa, Adriana, Gauthreaux, Kathryn M, Gefen, Tamar, Geschwind, Daniel H, Ghetti, Bernardino, and Gilbert, John R
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Biomedical and Clinical Sciences ,Biological Psychology ,Clinical Sciences ,Neurosciences ,Psychology ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Acquired Cognitive Impairment ,Neurodegenerative ,Brain Disorders ,Dementia ,Alzheimer's Disease ,Human Genome ,Biotechnology ,Aging ,Genetics ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Humans ,Alzheimer Disease ,Amyloid beta-Peptides ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Microtubule-Associated Proteins ,Polymorphism ,Single Nucleotide ,Sequence Analysis ,genetic risk ,late-onset Alzheimer's disease ,microtubule protein ,MTUS2 gene ,whole genome sequence ,Long‐Life Family Study ,Alzheimer's Disease Genetic Consortium ,Alzheimer's Biomarkers Consortium‐Down Syndrome ,late‐onset Alzheimer's disease ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionLate-onset Alzheimer's disease (LOAD) has a strong genetic component. Participants in Long-Life Family Study (LLFS) exhibit delayed onset of dementia, offering a unique opportunity to investigate LOAD genetics.MethodsWe conducted a whole genome sequence analysis of 3475 LLFS members. Genetic associations were examined in six independent studies (N = 14,260) with a wide range of LOAD risk. Association analysis in a sub-sample of the LLFS cohort (N = 1739) evaluated the association of LOAD variants with beta amyloid (Aβ) levels.ResultsWe identified several single nucleotide polymorphisms (SNPs) in tight linkage disequilibrium within the MTUS2 gene associated with LOAD (rs73154407, p = 7.6 × 10-9). Association of MTUS2 variants with LOAD was observed in the five independent studies and was significantly stronger within high levels of Aβ42/40 ratio compared to lower amyloid.DiscussionMTUS2 encodes a microtubule associated protein implicated in the development and function of the nervous system, making it a plausible candidate to investigate LOAD biology.HighlightsLong-Life Family Study (LLFS) families may harbor late onset Alzheimer's dementia (LOAD) variants. LLFS whole genome sequence analysis identified MTUS2 gene variants associated with LOAD. The observed LLFS variants generalized to cohorts with wide range of LOAD risk. The association of MTUS2 with LOAD was stronger within high levels of beta amyloid. Our results provide evidence for MTUS2 gene as a novel LOAD candidate locus.
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- 2024
25. Disentangling tau: One protein, many therapeutic approaches
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Lane-Donovan, Courtney and Boxer, Adam L
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Biomedical and Clinical Sciences ,Biological Psychology ,Neurosciences ,Psychology ,Pharmacology and Pharmaceutical Sciences ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Frontotemporal Dementia (FTD) ,Aging ,Rare Diseases ,Neurodegenerative ,Alzheimer's Disease ,Dementia ,Brain Disorders ,Acquired Cognitive Impairment ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions ,Aetiology ,2.1 Biological and endogenous factors ,Neurological ,Humans ,tau Proteins ,Alzheimer Disease ,Tauopathies ,Supranuclear Palsy ,Progressive ,Neurodegenerative Diseases ,Tau ,Neurodegeneration ,Alzheimer's disease ,Progressive supranuclear palsy ,Immunotherapy ,Clinical trials ,Public Health and Health Services ,Neurology & Neurosurgery ,Pharmacology and pharmaceutical sciences ,Biological psychology - Abstract
The tauopathies encompass over 20 adult neurodegenerative diseases and are characterized by the dysfunction and accumulation of insoluble tau protein. Among them, Alzheimer's disease, frontotemporal dementia, and progressive supranuclear palsy collectively impact millions of patients and their families worldwide. Despite years of drug development using a variety of mechanisms of action, no therapeutic directed against tau has been approved for clinical use. This raises important questions about our current model of tau pathology and invites thoughtful consideration of our approach to nonclinical models and clinical trial design. In this article, we review what is known about the biology and genetics of tau, placing it in the context of current and failed clinical trials. We highlight potential reasons for the lack of success to date and offer suggestions for new pathways in therapeutic development. Overall, our viewpoint to the future is optimistic for this important group of neurodegenerative diseases.
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- 2024
26. Scalable plasma and digital cognitive markers for diagnosis and prognosis of Alzheimer's disease and related dementias
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Tsoy, Elena, La Joie, Renaud, VandeVrede, Lawren, Rojas, Julio C, Yballa, Claire, Chan, Brandon, Lago, Argentina Lario, Rodriguez, Anne‐Marie, Goode, Collette A, Erlhoff, Sabrina J, Tee, Boon Lead, Windon, Charles, Lanata, Serggio, Kramer, Joel H, Miller, Bruce L, Dilworth‐Anderson, Peggye, Boxer, Adam L, Rabinovici, Gil D, and Possin, Katherine L
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Aging ,Acquired Cognitive Impairment ,Neurodegenerative ,Alzheimer's Disease ,Brain Disorders ,Dementia ,Clinical Research ,Biomedical Imaging ,Prevention ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,4.1 Discovery and preclinical testing of markers and technologies ,4.2 Evaluation of markers and technologies ,Neurological ,Humans ,Aged ,Alzheimer Disease ,Amyloid beta-Peptides ,Prognosis ,Cognitive Dysfunction ,Biomarkers ,Positron-Emission Tomography ,Cognition ,tau Proteins ,Alzheimer's disease ,blood-based biomarkers ,diagnosis ,digital cognitive assessment ,disease monitoring ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionWith emergence of disease-modifying therapies, efficient diagnostic pathways are critically needed to identify treatment candidates, evaluate disease severity, and support prognosis. A combination of plasma biomarkers and brief digital cognitive assessments could provide a scalable alternative to current diagnostic work-up.MethodsWe examined the accuracy of plasma biomarkers and a 10-minute supervised tablet-based cognitive assessment (Tablet-based Cognitive Assessment Tool Brain Health Assessment [TabCAT-BHA]) in predicting amyloid β positive (Aβ+) status on positron emission tomography (PET), concurrent disease severity, and functional decline in 309 older adults with subjective cognitive impairment (n = 49), mild cognitive impairment (n = 159), and dementia (n = 101).ResultsCombination of plasma pTau181, Aβ42/40, neurofilament light (NfL), and TabCAT-BHA was optimal for predicting Aβ-PET positivity (AUC = 0.962). Whereas NfL and TabCAT-BHA optimally predicted concurrent disease severity, combining these with pTau181 and glial fibrillary acidic protein was most accurate in predicting functional decline.DiscussionCombinations of plasma and digital cognitive markers show promise for scalable diagnosis and prognosis of ADRD.HighlightsThe need for cost-efficient diagnostic and prognostic markers of AD is urgent. Plasma and digital cognitive markers provide complementary diagnostic contributions. Combination of these markers holds promise for scalable diagnosis and prognosis. Future validation in community cohorts is needed to inform clinical implementation.
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- 2024
27. Irreducibility and Rigidity in Digital Images
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Boxer, Laurence
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Mathematics - Geometric Topology ,54B20, 54C35 - Abstract
We study some properties of irreducible and rigid digital images., Comment: All quoted and paraphrased material is cited. arXiv admin note: text overlap with arXiv:2307.13864, arXiv:2304.07365, arXiv:2303.00150
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- 2023
28. First Constraints on WIMP-Nucleon Effective Field Theory Couplings in an Extended Energy Region From LUX-ZEPLIN
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LZ Collaboration, Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Bargemann, J. W., Baxter, A., Beattie, K., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Bishop, E., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Carter, M., Chawla, A., Chen, H., Cherwinka, J. J., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Hertel, S. A., Heuermann, G., Homenides, G. J., Horn, M., Huang, D. Q., Hunt, D., Ignarra, C. M., Jacquet, E., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Krikler, B., Kudryavtsev, V. A., Lee, J., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Lopes, M. I., Asamar, E. Lopez, Lorenzon, W., Lu, C., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naylor, A., Nedlik, C., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Pannifer, N., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Turner, W., Vacheret, A., Vaitkus, A. C., Velan, V., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., Yeh, M., and Zweig, E. A.
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High Energy Physics - Experiment ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Following the first science results of the LUX-ZEPLIN (LZ) experiment, a dual-phase xenon time projection chamber operating from the Sanford Underground Research Facility in Lead, South Dakota, USA, we report the initial limits on a model-independent non-relativistic effective field theory describing the complete set of possible interactions of a weakly interacting massive particle (WIMP) with a nucleon. These results utilize the same 5.5 t fiducial mass and 60 live days of exposure collected for the LZ spin-independent and spin-dependent analyses while extending the upper limit of the energy region of interest by a factor of 7.5 to 270 keVnr. No significant excess in this high energy region is observed. Using a profile-likelihood ratio analysis, we report 90% confidence level exclusion limits on the coupling of each individual non-relativistic WIMP-nucleon operator for both elastic and inelastic interactions in the isoscalar and isovector bases., Comment: 17 pages 11 figures
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- 2023
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29. The Miami Framework for ALS and related neurodegenerative disorders: an integrated view of phenotype and biology
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Benatar, Michael, Wuu, Joanne, Huey, Edward D., McMillan, Corey T., Petersen, Ronald C., Postuma, Ronald, McHutchison, Caroline, Dratch, Laynie, Arias, Jalayne J., Crawley, Anita, Houlden, Henry, McDermott, Michael P., Cai, Xueya, Thakur, Neil, Boxer, Adam, Rosen, Howard, Boeve, Bradley F., Dacks, Penny, Cosentino, Stephanie, Abrahams, Sharon, Shneider, Neil, Lingor, Paul, Shefner, Jeremy, Andersen, Peter M., Al-Chalabi, Ammar, and Turner, Martin R.
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- 2024
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30. Cuspidal cohomology classes for GL_n(Z)
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Boxer, George, Calegari, Frank, and Gee, Toby
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Mathematics - Number Theory ,Mathematics - Representation Theory - Abstract
We prove the existence of a cuspidal automorphic representation $\pi$ for $GL_{79}/\mathbf{Q}$ of level one and weight zero. We construct $\pi$ using symmetric power functoriality and a change of weight theorem, using Galois deformation theory. As a corollary, we construct the first known cuspidal cohomology classes in $H^*(GL_{n}(\mathbf{Z}),\mathbf{C})$ for any $n > 1$., Comment: Accepted version, to appear in the Journal of the American Mathematical Society. 12 pages
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- 2023
31. The Ramanujan and Sato-Tate Conjectures for Bianchi modular forms
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Boxer, George, Calegari, Frank, Gee, Toby, Newton, James, and Thorne, Jack A.
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Mathematics - Number Theory - Abstract
We prove the Ramanujan and Sato-Tate conjectures for Bianchi modular forms of weight at least 2. More generally, we prove these conjectures for all regular algebraic cuspidal automorphic representations of $\mathrm{GL}_2(\mathbf{A}_F)$ of parallel weight, where $F$ is any CM field. We deduce these theorems from a new potential automorphy theorem for the symmetric powers of 2-dimensional compatible systems of Galois representations of parallel weight., Comment: v2: 74 pages. Minor changes. This is the accepted version
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- 2023
32. Neural basis of speech and grammar symptoms in non-fluent variant primary progressive aphasia spectrum
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Lorca-Puls, Diego L, Gajardo-Vidal, Andrea, Mandelli, Maria Luisa, Illán-Gala, Ignacio, Ezzes, Zoe, Wauters, Lisa D, Battistella, Giovanni, Bogley, Rian, Ratnasiri, Buddhika, Licata, Abigail E, Battista, Petronilla, García, Adolfo M, Tee, Boon Lead, Lukic, Sladjana, Boxer, Adam L, Rosen, Howard J, Seeley, William W, Grinberg, Lea T, Spina, Salvatore, Miller, Bruce L, Miller, Zachary A, Henry, Maya L, Dronkers, Nina F, and Gorno-Tempini, Maria Luisa
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Biological Psychology ,Cognitive and Computational Psychology ,Psychology ,Neurodegenerative ,Rare Diseases ,Aging ,Aphasia ,Neurosciences ,Dementia ,Alzheimer's Disease Related Dementias (ADRD) ,Brain Disorders ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Acquired Cognitive Impairment ,Frontotemporal Dementia (FTD) ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Aphasia ,Broca ,Prospective Studies ,Dysarthria ,Speech ,Cross-Sectional Studies ,Apraxias ,Aphasia ,Primary Progressive ,Primary Progressive Nonfluent Aphasia ,articulation ,syntactic ,sentence production ,sentence comprehension ,agrammatic ,lesion-symptom ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biomedical and clinical sciences ,Health sciences - Abstract
The non-fluent/agrammatic variant of primary progressive aphasia (nfvPPA) is a neurodegenerative syndrome primarily defined by the presence of apraxia of speech (AoS) and/or expressive agrammatism. In addition, many patients exhibit dysarthria and/or receptive agrammatism. This leads to substantial phenotypic variation within the speech-language domain across individuals and time, in terms of both the specific combination of symptoms as well as their severity. How to resolve such phenotypic heterogeneity in nfvPPA is a matter of debate. 'Splitting' views propose separate clinical entities: 'primary progressive apraxia of speech' when AoS occurs in the absence of expressive agrammatism, 'progressive agrammatic aphasia' (PAA) in the opposite case, and 'AOS + PAA' when mixed motor speech and language symptoms are clearly present. While therapeutic interventions typically vary depending on the predominant symptom (e.g. AoS versus expressive agrammatism), the existence of behavioural, anatomical and pathological overlap across these phenotypes argues against drawing such clear-cut boundaries. In the current study, we contribute to this debate by mapping behaviour to brain in a large, prospective cohort of well characterized patients with nfvPPA (n = 104). We sought to advance scientific understanding of nfvPPA and the neural basis of speech-language by uncovering where in the brain the degree of MRI-based atrophy is associated with inter-patient variability in the presence and severity of AoS, dysarthria, expressive agrammatism or receptive agrammatism. Our cross-sectional examination of brain-behaviour relationships revealed three main observations. First, we found that the neural correlates of AoS and expressive agrammatism in nfvPPA lie side by side in the left posterior inferior frontal lobe, explaining their behavioural dissociation/association in previous reports. Second, we identified a 'left-right' and 'ventral-dorsal' neuroanatomical distinction between AoS versus dysarthria, highlighting (i) that dysarthria, but not AoS, is significantly influenced by tissue loss in right-hemisphere motor-speech regions; and (ii) that, within the left hemisphere, dysarthria and AoS map onto dorsally versus ventrally located motor-speech regions, respectively. Third, we confirmed that, within the large-scale grammar network, left frontal tissue loss is preferentially involved in expressive agrammatism and left temporal tissue loss in receptive agrammatism. Our findings thus contribute to define the function and location of the epicentres within the large-scale neural networks vulnerable to neurodegenerative changes in nfvPPA. We propose that nfvPPA be redefined as an umbrella term subsuming a spectrum of speech and/or language phenotypes that are closely linked by the underlying neuroanatomy and neuropathology.
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- 2024
33. Spatiotemporal characteristics of neurophysiological changes in patients with four‐repeat tauopathies
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Samudra, Niyatee, Lerner, Hannah, Yack, Leslie, Walsh, Christine M, Kirsch, Heidi E, Kudo, Kiwamu, Yballa, Claire, La Joie, Renaud, Gorno‐Tempini, Maria L, Spina, Salvatore, Seeley, William W, Neylan, Thomas C, Miller, Bruce L, Rabinovici, Gil D, Boxer, Adam, Grinberg, Lea T, Rankin, Katherine P, Nagarajan, Srikantan S, and Ranasinghe, Kamalini G
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Biological Psychology ,Biomedical and Clinical Sciences ,Psychology ,Acquired Cognitive Impairment ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Rare Diseases ,Brain Disorders ,Pick's Disease ,Neurodegenerative ,Dementia ,Neurosciences ,Alzheimer's Disease ,Frontotemporal Dementia (FTD) ,Aging ,Alzheimer's Disease Related Dementias (ADRD) ,2.1 Biological and endogenous factors ,Neurological ,Humans ,tau Proteins ,Tauopathies ,Alzheimer Disease ,Supranuclear Palsy ,Progressive ,Brain ,Clinical Sciences ,Clinical and health psychology - Abstract
IntroductionProgressive supranuclear palsy (PSP) and corticobasal degeneration (CBD), are the most common four-repeat tauopathies (4RT), and both frequently occur with varying degree of Alzheimer's disease (AD) copathology. Intriguingly, patients with 4RT and patients with AD are at opposite ends of the wakefulness spectrum-AD showing reduced wakefulness and excessive sleepiness whereas 4RT showing decreased homeostatic sleep. The neural mechanisms underlying these distinct phenotypes in the comorbid condition of 4RT and AD are unknown. The objective of the current study was to define the alpha oscillatory spectrum, which is prominent in the awake resting-state in the human brain, in patients with primary 4RT, and how it is modified in comorbid AD-pathology.MethodIn an autopsy-confirmed case series of 4R-tauopathy patients (n = 10), whose primary neuropathological diagnosis was either PSP (n = 7) or CBD (n = 3), using high spatiotemporal resolution magnetoencephalography (MEG), we quantified the spectral power density within alpha-band (8-12 Hz) and examined how this pattern was modified in increasing AD-copathology. For each patient, their regional alpha power was compared to an age-matched normative control cohort (n = 35).ResultPatients with 4RT showed increased alpha power but in the presence of AD-copathology alpha power was reduced.ConclusionsAlpha power increase in PSP-tauopathy and reduction in the presence of AD-tauopathy is consistent with the observation that neurons activating wakefulness-promoting systems are preserved in PSP but degenerated in AD. These results highlight the selectively vulnerable impacts in 4RT versus AD-tauopathy that may have translational significance on disease-modifying therapies for specific proteinopathies.
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- 2024
34. Basal parasympathetic deficits in C9orf72 hexanucleotide repeat expansion carriers relate to smaller frontoinsula and thalamus volume and lower empathy
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Roy, Ashlin RK, Noohi, Fate, Morris, Nathaniel A, Ljubenkov, Peter, Heuer, Hilary, Fong, Jamie, Hall, Matthew, Lago, Argentina Lario, Rankin, Katherine P, Miller, Bruce L, Boxer, Adam L, Rosen, Howard J, Seeley, William W, Perry, David C, Yokoyama, Jennifer S, Lee, Suzee E, and Sturm, Virginia E
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Biomedical and Clinical Sciences ,Clinical Sciences ,Brain Disorders ,Aging ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Alzheimer's Disease Related Dementias (ADRD) ,Neurosciences ,Behavioral and Social Science ,Dementia ,Frontotemporal Dementia (FTD) ,Clinical Research ,Neurodegenerative ,Acquired Cognitive Impairment ,Rare Diseases ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Female ,Male ,Middle Aged ,C9orf72 Protein ,Aged ,Empathy ,Frontotemporal Dementia ,DNA Repeat Expansion ,Magnetic Resonance Imaging ,Parasympathetic Nervous System ,Thalamus ,Cognitive Dysfunction ,Heterozygote ,Respiratory Sinus Arrhythmia ,Cerebral Cortex ,Autonomic nervous system ,Prosocial behavior ,Insula ,Behavioral variant frontotemporal dementia ,C9orf72 ,autonomic nervous system ,prosocial behavior ,insula ,behavioral variant frontotemporal dementia ,Biological psychology ,Clinical and health psychology - Abstract
Diminished basal parasympathetic nervous system activity is a feature of frontotemporal dementia that relates to left frontoinsula dysfunction and empathy impairment. Individuals with a pathogenic expansion of the hexanucleotide repeat in chromosome 9 open reading frame 72 (C9orf72), the most common genetic cause of frontotemporal dementia and amyotrophic lateral sclerosis, provide a unique opportunity to examine whether parasympathetic activity is disrupted in genetic forms of frontotemporal dementia and to investigate when parasympathetic deficits manifest in the pathophysiological cascade. We measured baseline respiratory sinus arrhythmia, a parasympathetic measure of heart rate variability, over two minutes in a sample of 102 participants that included 19 asymptomatic expansion carriers (C9+ asymp), 14 expansion carriers with mild cognitive impairment (C9+ MCI), 16 symptomatic expansion carriers with frontotemporal dementia (C9+ FTD), and 53 expansion-negative healthy controls (C9- HC) who also underwent structural magnetic resonance imaging. In follow-up analyses, we compared baseline respiratory sinus arrhythmia in the C9+ FTD group with an independent age-, sex-, and clinical severity-matched group of 26 people with sporadic behavioral variant frontotemporal dementia. The Frontotemporal Lobar Degeneration-modified Clinical Dementia Rating-Sum of Boxes score was used to quantify behavioral symptom severity, and informant ratings on the Interpersonal Reactivity Index provided measures of participants' current emotional (empathic concern) and cognitive (perspective-taking) empathy. Results indicated that the C9+ FTD group had lower baseline respiratory sinus arrhythmia than the C9+ MCI, C9+ asymp, and C9- HC groups, a deficit that was comparable to that of sporadic behavioral variant frontotemporal dementia. Linear regression analyses indicated that lower baseline respiratory sinus arrhythmia was associated with worse behavioral symptom severity and lower empathic concern and perspective-taking across the C9orf72 expansion carrier clinical spectrum. Whole-brain voxel-based morphometry analyses in participants with C9orf72 pathogenic expansions found that lower baseline respiratory sinus arrhythmia correlated with smaller gray matter volume in the left frontoinsula and bilateral thalamus, key structures that support parasympathetic function, and in the bilateral parietal lobes, occipital lobes, and cerebellum, regions that are also vulnerable in individuals with C9orf72 expansions. This study provides novel evidence that basal parasympathetic functioning is diminished in FTD due to C9orf72 expansions and suggests that baseline respiratory sinus arrhythmia may be a potential non-invasive biomarker that is sensitive to behavioral symptoms in the early stages of disease.
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- 2024
35. Clinical implications of head trauma in frontotemporal dementia and primary progressive aphasia
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Asken, Breton M, Bove, Jessica M, Bauer, Russell M, Tanner, Jeremy A, Casaletto, Kaitlin B, Staffaroni, Adam M, VandeVrede, Lawren, Alosco, Michael L, Mez, Jesse B, Stern, Robert A, Miller, Bruce L, Grinberg, Lea T, Boxer, Adam L, Gorno-Tempini, Maria Luisa, Rosen, Howie J, Rabinovici, Gil D, and Kramer, Joel H
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Biomedical and Clinical Sciences ,Health Sciences ,Alzheimer's Disease Related Dementias (ADRD) ,Aging ,Acquired Cognitive Impairment ,Dementia ,Frontotemporal Dementia (FTD) ,Behavioral and Social Science ,Traumatic Head and Spine Injury ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Physical Injury - Accidents and Adverse Effects ,Neurodegenerative ,Brain Disorders ,Rare Diseases ,Neurosciences ,Traumatic Brain Injury (TBI) ,Aphasia ,Clinical Research ,Mental Health ,2.1 Biological and endogenous factors ,Neurological ,Good Health and Well Being ,Humans ,Male ,Female ,Frontotemporal Dementia ,Aged ,Aphasia ,Primary Progressive ,Middle Aged ,Craniocerebral Trauma ,Neuropsychological Tests ,Frontotemporal dementia ,Primary progressive aphasia ,Repetitive head impacts ,Traumatic brain injury ,Risk factor ,Medical and Health Sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundTraumatic brain injury (TBI) and repetitive head impacts (RHI) have been linked to increased risk for multiple types of neurodegenerative disease, higher dementia risk, and earlier age of dementia symptom onset, suggesting transdiagnostic implications for later-life brain health. Frontotemporal dementia (FTD) and primary progressive aphasia (PPA) represent a spectrum of clinical phenotypes that are neuropathologically diverse. FTD/PPA diagnoses bring unique challenges due to complex cognitive and behavioral symptoms that disproportionately present as an early-onset dementia (before age 65). We performed a detailed characterization of lifetime head trauma exposure in individuals with FTD and PPA compared to healthy controls to examine frequency of lifetime TBI and RHI and associated clinical implications.MethodsWe studied 132 FTD/PPA (age 68.9 ± 8.1, 65% male) and 132 sex-matched healthy controls (HC; age 73.4 ± 7.6). We compared rates of prior TBI and RHI (contact/collision sports) between FTD/PPA and HC (chi-square, logistic regression, analysis of variance). Within FTD/PPA, we evaluated associations with age of symptom onset (analysis of variance). Within behavioral variant FTD, we evaluated associations with cognitive function and neuropsychiatric symptoms (linear regression controlling for age, sex, and years of education).ResultsYears of participation were greater in FTD/PPA than HC for any contact/collision sport (8.5 ± 6.7yrs vs. 5.3 ± 4.5yrs, p = .008) and for American football (6.2yrs ± 4.3yrs vs. 3.1 ± 2.4yrs; p = .003). Within FTD/PPA, there were dose-dependent associations with earlier age of symptom onset for TBI (0 TBI: 62.1 ± 8.1, 1 TBI: 59.9 ± 6.9, 2 + TBI: 57.3 ± 8.4; p = .03) and years of American football (0yrs: 62.2 ± 8.7, 1-4yrs: 59.7 ± 7.0, 5 + yrs: 55.9 ± 6.3; p = .009). Within bvFTD, those who played American football had worse memory (z-score: -2.4 ± 1.2 vs. -1.4 ± 1.6, p = .02, d = 1.1).ConclusionsLifetime head trauma may represent a preventable environmental risk factor for FTD/PPA. Dose-dependent exposure to TBI or RHI influences FTD/PPA symptom onset and memory function in bvFTD. Clinico-pathological studies are needed to better understand the neuropathological correlates linking RHI or TBI to FTD/PPA onset and symptoms.
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- 2024
36. Whole-genome sequencing analysis reveals new susceptibility loci and structural variants associated with progressive supranuclear palsy
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Wang, Hui, Chang, Timothy S, Dombroski, Beth A, Cheng, Po-Liang, Patil, Vishakha, Valiente-Banuet, Leopoldo, Farrell, Kurt, Mclean, Catriona, Molina-Porcel, Laura, Rajput, Alex, De Deyn, Peter Paul, Le Bastard, Nathalie, Gearing, Marla, Kaat, Laura Donker, Van Swieten, John C, Dopper, Elise, Ghetti, Bernardino F, Newell, Kathy L, Troakes, Claire, de Yébenes, Justo G, Rábano-Gutierrez, Alberto, Meller, Tina, Oertel, Wolfgang H, Respondek, Gesine, Stamelou, Maria, Arzberger, Thomas, Roeber, Sigrun, Müller, Ulrich, Hopfner, Franziska, Pastor, Pau, Brice, Alexis, Durr, Alexandra, Le Ber, Isabelle, Beach, Thomas G, Serrano, Geidy E, Hazrati, Lili-Naz, Litvan, Irene, Rademakers, Rosa, Ross, Owen A, Galasko, Douglas, Boxer, Adam L, Miller, Bruce L, Seeley, Willian W, Van Deerlin, Vivanna M, Lee, Edward B, White, Charles L, Morris, Huw, de Silva, Rohan, Crary, John F, Goate, Alison M, Friedman, Jeffrey S, Leung, Yuk Yee, Coppola, Giovanni, Naj, Adam C, Wang, Li-San, Dalgard, Clifton, Dickson, Dennis W, Höglinger, Günter U, Schellenberg, Gerard D, Geschwind, Daniel H, and Lee, Wan-Ping
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Biological Sciences ,Genetics ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Neurodegenerative ,Acquired Cognitive Impairment ,Frontotemporal Dementia (FTD) ,Rare Diseases ,Neurosciences ,Dementia ,Human Genome ,Brain Disorders ,Biotechnology ,Aging ,Alzheimer's Disease Related Dementias (ADRD) ,Alzheimer's Disease ,2.1 Biological and endogenous factors ,Neurological ,Progressive Supranuclear Palsy ,Whole-Genome Sequencing ,Genome-Wide Association Study ,Structural Variants ,Apolipoprotein E ,P. S. P. genetics study group ,Humans ,Supranuclear Palsy ,Progressive ,Genetic Predisposition to Disease ,Polymorphism ,Single Nucleotide ,Aged ,Aged ,80 and over ,Middle Aged ,Female ,Male ,Whole Genome Sequencing ,Clinical Sciences ,Neurology & Neurosurgery ,Biochemistry and cell biology - Abstract
BackgroundProgressive supranuclear palsy (PSP) is a rare neurodegenerative disease characterized by the accumulation of aggregated tau proteins in astrocytes, neurons, and oligodendrocytes. Previous genome-wide association studies for PSP were based on genotype array, therefore, were inadequate for the analysis of rare variants as well as larger mutations, such as small insertions/deletions (indels) and structural variants (SVs).MethodIn this study, we performed whole genome sequencing (WGS) and conducted association analysis for single nucleotide variants (SNVs), indels, and SVs, in a cohort of 1,718 cases and 2,944 controls of European ancestry. Of the 1,718 PSP individuals, 1,441 were autopsy-confirmed and 277 were clinically diagnosed.ResultsOur analysis of common SNVs and indels confirmed known genetic loci at MAPT, MOBP, STX6, SLCO1A2, DUSP10, and SP1, and further uncovered novel signals in APOE, FCHO1/MAP1S, KIF13A, TRIM24, TNXB, and ELOVL1. Notably, in contrast to Alzheimer's disease (AD), we observed the APOE ε2 allele to be the risk allele in PSP. Analysis of rare SNVs and indels identified significant association in ZNF592 and further gene network analysis identified a module of neuronal genes dysregulated in PSP. Moreover, seven common SVs associated with PSP were observed in the H1/H2 haplotype region (17q21.31) and other loci, including IGH, PCMT1, CYP2A13, and SMCP. In the H1/H2 haplotype region, there is a burden of rare deletions and duplications (P = 6.73 × 10-3) in PSP.ConclusionsThrough WGS, we significantly enhanced our understanding of the genetic basis of PSP, providing new targets for exploring disease mechanisms and therapeutic interventions.
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- 2024
37. Examining Associations Between Smartphone Use and Clinical Severity in Frontotemporal Dementia: Proof-of-Concept Study
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Paolillo, Emily W, Casaletto, Kaitlin B, Clark, Annie L, Taylor, Jack C, Heuer, Hilary W, Wise, Amy B, Dhanam, Sreya, Sanderson-Cimino, Mark, Saloner, Rowan, Kramer, Joel H, Kornak, John, Kremers, Walter, Forsberg, Leah, Appleby, Brian, Bayram, Ece, Bozoki, Andrea, Brushaber, Danielle, Darby, R Ryan, Day, Gregory S, Dickerson, Bradford C, Domoto-Reilly, Kimiko, Elahi, Fanny, Fields, Julie A, Ghoshal, Nupur, Graff-Radford, Neill, Hall, Matthew GH, Honig, Lawrence S, Huey, Edward D, Lapid, Maria I, Litvan, Irene, Mackenzie, Ian R, Masdeu, Joseph C, Mendez, Mario F, Mester, Carly, Miyagawa, Toji, Naasan, Georges, Pascual, Belen, Pressman, Peter, Ramos, Eliana Marisa, Rankin, Katherine P, Rexach, Jessica, Rojas, Julio C, VandeVrede, Lawren, Wong, Bonnie, Wszolek, Zbigniew K, Boeve, Bradley F, Rosen, Howard J, Boxer, Adam L, Staffaroni, Adam M, and Consortium, ALLFTD
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Health Services and Systems ,Biomedical and Clinical Sciences ,Health Sciences ,Alzheimer's Disease Related Dementias (ADRD) ,Basic Behavioral and Social Science ,Alzheimer's Disease ,Behavioral and Social Science ,Neurosciences ,Brain Disorders ,Dementia ,Acquired Cognitive Impairment ,Mental Health ,Aging ,Frontotemporal Dementia (FTD) ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Neurodegenerative ,Clinical Research ,2.1 Biological and endogenous factors ,4.1 Discovery and preclinical testing of markers and technologies ,Mental health ,Neurological ,Humans ,Female ,Male ,Middle Aged ,Frontotemporal Dementia ,Smartphone ,Aged ,Severity of Illness Index ,Proof of Concept Study ,Adult ,Longitudinal Studies ,Neuropsychological Tests ,Mobile Applications ,digital ,technology ,remote ,monitoring ,cognition ,neuropsychology ,cognitive impairment ,neurodegenerative ,screening ,clinical trials ,mobile phone ,ALLFTD Consortium ,Clinical sciences ,Biomedical engineering ,Health services and systems - Abstract
BackgroundFrontotemporal lobar degeneration (FTLD) is a leading cause of dementia in individuals aged
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- 2024
38. [18F]PI-2620 Binding Patterns in Patients with Suspected Alzheimer Disease and Frontotemporal Lobar Degeneration
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Blazhenets, Ganna, Soleimani-Meigooni, David N, Thomas, Wesley, Mundada, Nidhi, Brendel, Matthias, Vento, Stephanie, VandeVrede, Lawren, Heuer, Hilary W, Ljubenkov, Peter, Rojas, Julio C, Chen, Miranda K, Amuiri, Alinda N, Miller, Zachary, Gorno-Tempini, Maria L, Miller, Bruce L, Rosen, Howie J, Litvan, Irene, Grossman, Murray, Boeve, Brad, Pantelyat, Alexander, Tartaglia, Maria Carmela, Irwin, David J, Dickerson, Brad C, Baker, Suzanne L, Boxer, Adam L, Rabinovici, Gil D, and La Joie, Renaud
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Biomedical and Clinical Sciences ,Clinical Sciences ,Acquired Cognitive Impairment ,Biomedical Imaging ,Dementia ,Aging ,Aphasia ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Neurosciences ,Frontotemporal Dementia (FTD) ,Alzheimer's Disease Related Dementias (ADRD) ,Neurodegenerative ,Clinical Research ,Alzheimer's Disease ,Rare Diseases ,Brain Disorders ,Neurological ,Humans ,Alzheimer Disease ,Supranuclear Palsy ,Progressive ,Corticobasal Degeneration ,Positron-Emission Tomography ,Frontotemporal Lobar Degeneration ,Frontotemporal Dementia ,Amyloid beta-Peptides ,Aphasia ,Primary Progressive ,tau Proteins ,FTLD ,PI2620 ,tau PET ,Alzheimer disease ,Nuclear Medicine & Medical Imaging ,Clinical sciences - Abstract
Tau PET has enabled the visualization of paired helical filaments of 3 or 4 C-terminal repeat tau in Alzheimer disease (AD), but its ability to detect aggregated tau in frontotemporal lobar degeneration (FTLD) spectrum disorders is uncertain. We investigated 2-(2-([18F]fluoro)pyridin-4-yl)-9H-pyrrolo[2,3-b:4,5c']dipyridine ([18F]PI-2620), a newer tracer with ex vivo evidence for binding to FTLD tau, in a convenience sample of patients with suspected FTLD and AD using a static acquisition protocol and parametric SUV ratio (SUVr) images. Methods: We analyzed [18F]PI-2620 PET data from 65 patients with clinical diagnoses associated with AD or FTLD neuropathology; most (60/65) also had amyloid-β (Aβ) PET. Scans were acquired 30-60 min after injection; SUVr maps (reference, inferior cerebellar cortex) were created for the full acquisition and for 10-min truncated sliding windows (30-40, 35-45,…50-60 min). Age- and sex-adjusted z score maps were computed for each patient, relative to 23 Aβ-negative cognitively healthy controls (HC). Mean SUVr in the globus pallidus, substantia nigra, subthalamic nuclei, dentate nuclei, white matter, and temporal gray matter was extracted for the full and truncated windows. Results: Patients with suspected AD neuropathology (Aβ-positive patients with mild cognitive impairment or AD dementia) showed high-intensity temporoparietal cortex-predominant [18F]PI-2620 binding. At the group level, patients with clinical diagnoses associated with FTLD (progressive supranuclear palsy with Richardson syndrome [PSP Richardson syndrome], corticobasal syndrome, and nonfluent-variant primary progressive aphasia) exhibited higher globus pallidus SUVr than did HCs; pallidal retention was highest in the PSP Richardson syndrome group, in whom SUVr was correlated with symptom severity (ρ = 0.53, P = 0.05). At the individual level, only half of PSP Richardson syndrome, corticobasal syndrome, and nonfluent-variant primary progressive aphasia patients had a pallidal SUVr above that of HCs. Temporal SUVr discriminated AD patients from HCs with high accuracy (area under the receiver operating characteristic curve, 0.94 [95% CI, 0.83-1.00]) for all time windows, whereas discrimination between patients with PSP Richardson syndrome and HCs using pallidal SUVr was fair regardless of time window (area under the receiver operating characteristic curve, 0.77 [95% CI, 0.61-0.92] at 30-40 min vs. 0.81 [95% CI, 0.66-0.96] at 50-60 min; P = 0.67). Conclusion: [18F]PI-2620 SUVr shows an intense and consistent signal in AD but lower-intensity, heterogeneous, and rapidly decreasing binding in patients with suspected FTLD. Further work is needed to delineate the substrate of [18F]PI-2620 binding and the usefulness of [18F]PI2620 SUVr quantification outside the AD continuum.
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- 2023
39. Feasibility of a digital palliative care intervention (Convoy-Pal) for older adults with heart failure and multiple chronic conditions and their caregivers: a waitlist randomized control trial
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Lyndsay DeGroot, Riley Gillette, Jennifer Paola Villalobos, Geoffrey Harger, Dylan Thomas Doyle, Sheana Bull, David B. Bekelman, Rebecca Boxer, Jean S. Kutner, and Jennifer D. Portz
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Digital health ,Palliative care ,Aging ,Heart failure ,Special situations and conditions ,RC952-1245 - Abstract
Abstract Background Although older adults with heart failure (HF) and multiple chronic conditions (MCC) frequently rely on caregivers for health management, digital health systems, such as patient portals and mobile apps, are designed for individual patients and often exclude caregivers. There is a need to develop approaches that integrate caregivers into care. This study tested the feasibility of the Social Convoy Palliative Care intervention (Convoy-Pal), a 12-week digital self-management program that includes assessment tools and resources for clinical palliative care, designed for both patients and their caregivers. Methods A randomized waitlist control feasibility trial involving patients over 65 years old with MCC who had been hospitalized two or more times for HF in the past 12 months and their caregivers. Descriptive statistics were used to evaluate recruitment, retention, missing data, self-reported social functioning, positive aspects of caregiving, and the acceptability of the intervention. Results Of 126 potentially eligible patients, 11 were ineligible and 69 were deceased. Of the 46 eligible patients, 31 enrolled in the trial. Although 48 caregivers were identified, only 15 enrolled. The average age was 76.3 years for patients and 71.6 years for caregivers, with most participants being non-Hispanic White. Notably, 4% did not have access to a personal mobile device or computer. Retention rates were 79% for intervention patients, 57% for intervention caregivers, and 60% for control participants. Only 4.6% of survey subscales were missing, aided by robust technical support. Intervention patients reported improved social functioning (SF-36: 64.6 ± 25.8 to 73.2 ± 31.3) compared to controls (64.6 ± 27.1 to 67.5 ± 24.4). Intervention caregivers also reported increased positive perceptions of caregiving (29.5 ± 5.28 to 35.0 ± 5.35) versus control caregivers (29.4 ± 8.7 to 28.0 ± 4.4). Waitlist control participants who later joined the Convoy-Pal program showed similar improvements. The intervention was well-rated for acceptability, especially regarding the information provided (3.96 ± .57 out of 5). Conclusions Recruiting informal caregivers proved challenging. Nonetheless, Convoy-Pal retained patients and collected meaningful self-reported outcomes, showing potential benefits for both patients and caregivers. Given the importance of a patient and caregiver approach in palliative care, further research is needed to design digital tools that cater to multiple simultaneous users. Trial registration ClinicalTrials.gov Identifier NCT04779931. Date of registration: March 3, 2021.
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- 2024
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40. Remarks on fixed point assertions in digital topology, 8
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Laurence Boxer
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digital topology ,digital image ,fixed point ,digital metric space ,Mathematics ,QA1-939 ,Analysis ,QA299.6-433 - Abstract
This paper continues a series in which we study deficiencies in previously published works concerning fixed point assertions for digital images.
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- 2024
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41. GPR37 processing in neurodegeneration: a potential marker for Parkinson’s Disease progression rate
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Josep Argerich, Leonardo D. Garma, Marc López-Cano, Paula Álvarez-Montoya, Laura Gómez-Acero, Víctor Fernández-Dueñas, Ana B. Muñoz-Manchado, Ester Aso, Adam Boxer, Pol Andres-Benito, Per Svenningsson, and Francisco Ciruela
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract The orphan G protein-coupled receptor 37 (GPR37), widely associated with Parkinson’s disease (PD), undergoes proteolytic processing under physiological conditions. The N-terminus domain is proteolyzed by a disintegrin and metalloproteinase 10 (ADAM-10), which generates various membrane receptor forms and ectodomain shedding (ecto-GPR37) in the extracellular environment. We investigated the processing and density of GPR37 in several neurodegenerative conditions, including Lewy body disease (LBD), multiple system atrophy (MSA), corticobasal degeneration (CBD), progressive supranuclear palsy (PSP), and Alzheimer’s disease (AD). The presence of ecto-GPR37 peptides in the cerebrospinal fluid (CSF) of PD, MSA, CBD and PSP patients was assessed through an in-house nanoluciferase-based immunoassay. This study identified increased receptor processing in early-stage LBD within the PFC and striatum, key brain areas in neurodegeneration. In MSA only the 52 kDa form of GPR37 appeared in the striatum. This form was also significantly elevated in the striatum of AD necropsies. On the contrary, GPR37 processing remained unchanged in the brains of CBD and PSP patients. Furthermore, while CSF ecto-GPR37 increased in PD patients, its levels remained unchanged in MSA, CBD, and PSP subjects. Importantly, patients with PD with rapid progression of the disease did not have elevated ecto-GPR37 in the CSF, while those with slow progression showed a significant increase, suggesting a possible prognostic use of ecto-GPR37 in PD. This research underscores the distinctive processing and density patterns of GPR37 in neurodegenerative diseases, providing crucial insights into its potential role as an indicator of PD progression rates.
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- 2024
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42. A search for new physics in low-energy electron recoils from the first LZ exposure
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The LZ Collaboration, Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Baker, A., Balashov, S., Bang, J., Bargemann, J. W., Baxter, A., Beattie, K., Beltrame, P., Benson, T., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Blockinger, G. M., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Buuck, M., Carmona-Benitez, M. C., Chan, C., Chawla, A., Chen, H., Cherwinka, J. J., Chott, N. I., Converse, M. V., Cottle, A., Cox, G., Curran, D., Dahl, C. E., David, A., Delgaudio, J., Dey, S., de Viveiros, L., Ding, C., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fearon, N. M., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T. M. A., Gaitskell, R. J., Geffre, A., Genovesi, J., Ghag, C., Gibbons, R., Gokhale, S., Green, J., van der Grinten, M. G. D., Hall, C. R., Han, S., Hartigan-O'Connor, E., Haselschwardt, S. J., Huang, D. Q., Hertel, S. A., Heuermann, G., Horn, M., Hunt, D., Ignarra, C. M., Jahangir, O., James, R. S., Johnson, J., Kaboth, A. C., Kamaha, A. C., Khaitan, D., Khazov, A., Khurana, I., Kim, J., Kingston, J., Kirk, R., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Krikler, B., Kudryavtsev, V. A., Leason, E. A., Lee, J., Leonard, D. S., Lesko, K. T., Levy, C., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Liu, X., Lopes, M. I., Asamar, E. Lopez, Lorenzon, W., Lu, C., Lucero, D., Luitz, S., Majewski, P. A., Manalaysay, A., Mannino, R. L., Maupin, C., McCarthy, M. E., McDowell, G., McKinsey, D. N., McLaughlin, J., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naim, D., Naylor, A., Nedlik, C., Nelson, H. N., Neves, F., Nguyen, A., Nikoleyczik, J. A., Olcina, I., Oliver-Mallory, K. C., Orpwood, J., Palladino, K. J., Palmer, J., Parveen, N., Patton, S. J., Penning, B., Pereira, G., Perry, E., Pershing, T., Piepke, A., Poudel, S., Qie, Y., Reichenbacher, J., Rhyne, C. A., Riffard, Q., Rischbieter, G. R. C., Riyat, H. S., Rosero, R., Rushton, T., Rynders, D., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Smith, R., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Szydagis, M., Taylor, W. C., Temples, D. J., Tiedt, D. R., Timalsina, M., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Turner, W., Vacheret, A., Vaitkus, A. C., Wang, A., Wang, J. J., Wang, Y., Watson, J. R., Webb, R. C., Weeldreyer, L., Whitis, T. J., Williams, M., Wisniewski, W. J., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., Yeh, M., and Zweig, E. A.
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High Energy Physics - Experiment ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
The LUX-ZEPLIN (LZ) experiment is a dark matter detector centered on a dual-phase xenon time projection chamber. We report searches for new physics appearing through few-keV-scale electron recoils, using the experiment's first exposure of 60 live days and a fiducial mass of 5.5t. The data are found to be consistent with a background-only hypothesis, and limits are set on models for new physics including solar axion electron coupling, solar neutrino magnetic moment and millicharge, and electron couplings to galactic axion-like particles and hidden photons. Similar limits are set on weakly interacting massive particle (WIMP) dark matter producing signals through ionized atomic states from the Migdal effect., Comment: 13 pages, 10 figures. See https://tinyurl.com/LZDataReleaseRun1ER for a data release related to this paper
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- 2023
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43. Trimming and Building Freezing Sets
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Boxer, Laurence
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Mathematics - Geometric Topology ,Mathematics - Combinatorics ,54H25 - Abstract
We develop new tools for the construction of fixed point sets in digital topology. We define excludable points and show that these may be excluded from all freezing sets. We show that articulation points are excludable. We also present results concerning points that must belong to a freezing set and often are easily recognized. These include points of degree~1 and some local extrema., Comment: This submission replaces a withdrawn paper. It contains material quoted or paraphrased from earlier papers; sources are noted. arXiv admin note: text overlap with arXiv:2304.07365
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- 2023
44. Remarks on Fixed Point Assertions in Digital Topology, 7
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Boxer, Laurence
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Mathematics - Geometric Topology ,54H30 - Abstract
This paper continues a series discussing flaws in published assertions concerning fixed points in digital images., Comment: arXiv admin note: text overlap with arXiv:2212.09960 Author's response: all sources of the overlap are cited
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- 2023
45. Auditing Predictive Models for Intersectional Biases
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Boxer, Kate S., McFowland III, Edward, and Neill, Daniel B.
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Computer Science - Machine Learning - Abstract
Predictive models that satisfy group fairness criteria in aggregate for members of a protected class, but do not guarantee subgroup fairness, could produce biased predictions for individuals at the intersection of two or more protected classes. To address this risk, we propose Conditional Bias Scan (CBS), a flexible auditing framework for detecting intersectional biases in classification models. CBS identifies the subgroup for which there is the most significant bias against the protected class, as compared to the equivalent subgroup in the non-protected class, and can incorporate multiple commonly used fairness definitions for both probabilistic and binarized predictions. We show that this methodology can detect previously unidentified intersectional and contextual biases in the COMPAS pre-trial risk assessment tool and has higher bias detection power compared to similar methods that audit for subgroup fairness., Comment: 29 pages, 7 figures
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- 2023
46. Longitudinal clinical, cognitive and biomarker profiles in dominantly inherited versus sporadic early-onset Alzheimer’s disease
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Llibre-Guerra, Jorge J, Iaccarino, Leonardo, Coble, Dean, Edwards, Lauren, Li, Yan, McDade, Eric, Strom, Amelia, Gordon, Brian, Mundada, Nidhi, Schindler, Suzanne E, Tsoy, Elena, Ma, Yinjiao, Lu, Ruijin, Fagan, Anne M, Benzinger, Tammie LS, Soleimani-Meigooni, David, Aschenbrenner, Andrew J, Miller, Zachary, Wang, Guoqiao, Kramer, Joel H, Hassenstab, Jason, Rosen, Howard J, Morris, John C, Miller, Bruce L, Xiong, Chengjie, Perrin, Richard J, Allegri, Ricardo, Chrem, Patricio, Surace, Ezequiel, Berman, Sarah B, Chhatwal, Jasmeer, Masters, Colin L, Farlow, Martin R, Jucker, Mathias, Levin, Johannes, Fox, Nick C, Day, Gregory, Gorno-Tempini, Maria Luisa, Boxer, Adam L, La Joie, Renaud, Rabinovici, Gil D, and Bateman, Randall
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Biomedical and Clinical Sciences ,Biological Psychology ,Clinical Sciences ,Neurosciences ,Psychology ,Neurodegenerative ,Acquired Cognitive Impairment ,Genetics ,Brain Disorders ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Clinical Research ,Alzheimer's Disease ,Aging ,Dementia ,2.1 Biological and endogenous factors ,Neurological ,early-onset Alzheimer's disease ,sporadic ,dominantly inherited ,early-onset Alzheimer’s disease ,Clinical sciences ,Biological psychology - Abstract
Approximately 5% of Alzheimer's disease cases have an early age at onset (
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- 2023
47. Optical control of ultrafast structural dynamics in a fluorescent protein.
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Hutchison, Christopher, Baxter, James, Fitzpatrick, Ann, Dorlhiac, Gabriel, Fadini, Alisia, Perrett, Samuel, Maghlaoui, Karim, Lefèvre, Salomé, Cordon-Preciado, Violeta, Ferreira, Josie, Chukhutsina, Volha, Garratt, Douglas, Barnard, Jonathan, Galinis, Gediminas, Glencross, Flo, Morgan, Rhodri, Stockton, Sian, Taylor, Ben, Yuan, Letong, Romei, Matthew, Lin, Chi-Yun, Marangos, Jon, Schmidt, Marius, Chatrchyan, Viktoria, Buckup, Tiago, Morozov, Dmitry, Park, Jaehyun, Park, Sehan, Eom, Intae, Kim, Minseok, Jang, Dogeun, Choi, Hyeongi, Hyun, HyoJung, Park, Gisu, Nango, Eriko, Tanaka, Rie, Owada, Shigeki, Tono, Kensuke, DePonte, Daniel, Carbajo, Sergio, Seaberg, Matt, Aquila, Andrew, Boutet, Sebastien, Barty, Anton, Iwata, So, Boxer, Steven, Groenhof, Gerrit, and van Thor, Jasper
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Motion ,Vibration ,Rhodopsin ,Hydrogen Bonding - Abstract
The photoisomerization reaction of a fluorescent protein chromophore occurs on the ultrafast timescale. The structural dynamics that result from femtosecond optical excitation have contributions from vibrational and electronic processes and from reaction dynamics that involve the crossing through a conical intersection. The creation and progression of the ultrafast structural dynamics strongly depends on optical and molecular parameters. When using X-ray crystallography as a probe of ultrafast dynamics, the origin of the observed nuclear motions is not known. Now, high-resolution pump-probe X-ray crystallography reveals complex sub-ångström, ultrafast motions and hydrogen-bonding rearrangements in the active site of a fluorescent protein. However, we demonstrate that the measured motions are not part of the photoisomerization reaction but instead arise from impulsively driven coherent vibrational processes in the electronic ground state. A coherent-control experiment using a two-colour and two-pulse optical excitation strongly amplifies the X-ray crystallographic difference density, while it fully depletes the photoisomerization process. A coherent control mechanism was tested and confirmed the wave packets assignment.
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- 2023
48. Co-pathology may impact outcomes of amyloid-targeting treatments: clinicopathological results from two patients treated with aducanumab
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VandeVrede, Lawren, La Joie, Renaud, Horiki, Sheena, Mundada, Nidhi S, Koestler, Mary, Hwang, Ji-Hye, Ljubenkov, Peter A, Rojas, Julio C, Rabinovici, Gil D, Boxer, Adam L, and Seeley, William W
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Biomedical and Clinical Sciences ,Clinical Sciences ,Humans ,Alzheimer Disease ,Antibodies ,Monoclonal ,Humanized ,Amyloid ,Amyloidogenic Proteins ,Amyloid beta-Peptides ,Alzheimer's disease ,Lewy body disease ,Aducanumab ,Clinicopathological correlation ,Alzheimer’s disease ,Neurosciences ,Neurology & Neurosurgery - Published
- 2023
49. Accelerating Alzheimer’s therapeutic development: The past and future of clinical trials
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Boxer, Adam L and Sperling, Reisa
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Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Biological Sciences ,Clinical Research ,Dementia ,Clinical Trials and Supportive Activities ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Alzheimer's Disease ,Aging ,Neurodegenerative ,Acquired Cognitive Impairment ,Neurosciences ,Brain Disorders ,Neurological ,Humans ,Alzheimer Disease ,Amyloid beta-Peptides ,Amyloidogenic Proteins ,Antibodies ,Monoclonal ,Biomarkers ,Clinical Trials as Topic ,Drug Development ,Medical and Health Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences - Abstract
Alzheimer's disease (AD) research has entered a new era with the recent positive phase 3 clinical trials of the anti-Aβ antibodies lecanemab and donanemab. Why did it take 30 years to achieve these successes? Developing potent therapies for reducing fibrillar amyloid was key, as was selection of patients at relatively early stages of disease. Biomarkers of the target pathologies, including amyloid and tau PET, and insights from past trials were also critical to the recent successes. Moving forward, the challenge will be to develop more efficacious therapies with greater efficiency. Novel trial designs, including combination therapies and umbrella and basket protocols, will accelerate clinical development. Better diversity and inclusivity of trial participants are needed, and blood-based biomarkers may help to improve access for medically underserved groups. Incentivizing innovation in both academia and industry through public-private partnerships, collaborative mechanisms, and the creation of new career paths will be critical to build momentum in these exciting times.
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- 2023
50. Presence of Preoperative Neurodegeneration Biofluid Markers in Patients with Postoperative Delirium
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Leung, Jacqueline M, Rojas, Julio C, Tang, Christopher, Chan, Brandon, Lario-Lago, Argentina, Boxer, Adam L, Do, Quyen, Kramer, Joel H, Du, Zhiyuan, Du, Pang, Sands, Laura P, Pleasants, Devon, Tabatabai, Sanam, Tran, Danielle, Chang, Stacey, Meckler, Gabriela, Newman, Stacey, Tsai, Tiffany, Voss, Vanessa, and Youngblom, Emily
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Biomedical and Clinical Sciences ,Clinical Sciences ,Neurosciences ,Brain Disorders ,Patient Safety ,Mental Health ,Acquired Cognitive Impairment ,Neurodegenerative ,Aging ,Clinical Research ,Humans ,Female ,Male ,Emergence Delirium ,Retrospective Studies ,Case-Control Studies ,Postoperative Complications ,Biomarkers ,Perioperative Medicine Research Group ,Anesthesiology ,Clinical sciences - Abstract
BackgroundThe pathophysiology of delirium is incompletely understood, including what molecular pathways are involved in brain vulnerability to delirium. This study examined whether preoperative plasma neurodegeneration markers were elevated in patients who subsequently developed postoperative delirium through a retrospective case-control study.MethodsInclusion criteria were patients of 65 yr of age or older, undergoing elective noncardiac surgery with a hospital stay of 2 days or more. Concentrations of preoperative plasma P-Tau181, neurofilament light chain, amyloid β1-42 (Aβ42), and glial fibrillary acidic protein were measured with a digital immunoassay platform. The primary outcome was postoperative delirium measured by the Confusion Assessment Method. The study included propensity score matching by age and sex with nearest neighbor, such that each patient in the delirium group was matched by age and sex with a patient in the no-delirium group.ResultsThe initial cohort consists of 189 patients with no delirium and 102 patients who developed postoperative delirium. Of 291 patients aged 72.5 ± 5.8 yr, 50.5% were women, and 102 (35%) developed postoperative delirium. The final cohort in the analysis consisted of a no-delirium group (n = 102) and a delirium group (n = 102) matched by age and sex using the propensity score method. Of the four biomarkers assayed, the median value for neurofilament light chain was 32.05 pg/ml for the delirium group versus 23.7 pg/ml in the no-delirium group. The distribution of biomarker values significantly differed between the delirium and no-delirium groups (P = 0.02 by the Kolmogorov-Smirnov test) with the largest cumulative probability difference appearing at the biomarker value of 32.05 pg/ml.ConclusionsThese results suggest that patients who subsequently developed delirium are more likely to be experiencing clinically silent neurodegenerative changes before surgery, reflected by changes in plasma neurofilament light chain biomarker concentrations, which may identify individuals with a preoperative vulnerability to subsequent cognitive decline.Editor’s perspective
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- 2023
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