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9 results on '"Bowers, Tera"'

1. High-throughput RNA isoform sequencing using programmed cDNA concatenation

Author

Al’Khafaji, Aziz M., Smith, Jonathan T., Garimella, Kiran V., Babadi, Mehrtash, Popic, Victoria, Sade-Feldman, Moshe, Gatzen, Michael, Sarkizova, Siranush, Schwartz, Marc A., Blaum, Emily M., Day, Allyson, Costello, Maura, Bowers, Tera, Gabriel, Stacey, Banks, Eric, Philippakis, Anthony A., Boland, Genevieve M., Blainey, Paul C., and Hacohen, Nir

Published
2024
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2. Transcriptome variation in human tissues revealed by long-read sequencing

Author

Glinos, Dafni A., Garborcauskas, Garrett, Hoffman, Paul, Ehsan, Nava, Jiang, Lihua, Gokden, Alper, Dai, Xiaoguang, Aguet, François, Brown, Kathleen L., Garimella, Kiran, Bowers, Tera, Costello, Maura, Ardlie, Kristin, Jian, Ruiqi, Tucker, Nathan R., Ellinor, Patrick T., Harrington, Eoghan D., Tang, Hua, Snyder, Michael, Juul, Sissel, Mohammadi, Pejman, MacArthur, Daniel G., Lappalainen, Tuuli, and Cummings, Beryl B.

Published
2022
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3. High-throughput RNA isoform sequencing using programmed cDNA concatenation.

Author

Al'Khafaji, Aziz M., Smith, Jonathan T., Garimella, Kiran V., Babadi, Mehrtash, Popic, Victoria, Sade-Feldman, Moshe, Gatzen, Michael, Sarkizova, Siranush, Schwartz, Marc A., Blaum, Emily M., Day, Allyson, Costello, Maura, Bowers, Tera, Gabriel, Stacey, Banks, Eric, Philippakis, Anthony A., Boland, Genevieve M., Blainey, Paul C., and Hacohen, Nir

Abstract

Full-length RNA-sequencing methods using long-read technologies can capture complete transcript isoforms, but their throughput is limited. We introduce multiplexed arrays isoform sequencing (MAS-ISO-seq), a technique for programmably concatenating complementary DNAs (cDNAs) into molecules optimal for long-read sequencing, increasing the throughput >15-fold to nearly 40 million cDNA reads per run on the Sequel IIe sequencer. When applied to single-cell RNA sequencing of tumor-infiltrating T cells, MAS-ISO-seq demonstrated a 12- to 32-fold increase in the discovery of differentially spliced genes. Programmable concatenation of cDNA molecules increases the throughput of PacBio sequencing about 15-fold. [ABSTRACT FROM AUTHOR]

Published
2024
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4. O34: Application of long-read sequencing and telomere-to-telomere genome assembly unveils complex rearrangements and cryptic breakpoints of Robertsonian translocation and ring chromosomes*

Author

Quintero-Rivera, Fabiola, primary, Mostovoy, Yulia, additional, Boone, Philip, additional, Huang, Steve, additional, Garimella, Kiran, additional, Martinez-Agosto, Julian, additional, Russell, Bianca, additional, Bowers, Tera, additional, De Smet, Tim, additional, Gabriel, Stacey, additional, Gusella, James, additional, Brand, Harrison, additional, and Talkowski, Michael, additional

Published
2023
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5. REPLACING GWAS ARRAYS: CAPTURING GENOMIC DIVERSITY WITH A NOVEL WHOLE-EXOME PLUS LOW-PASS WHOLE GENOME PRODUCT

Author

Howrigan, Daniel, primary, DeFelice, Matthew, additional, Grimsby, Jonna, additional, Blumenstiel, Brendan, additional, Holmes, Laurie, additional, Ferriera, Steve, additional, Bowers, Tera, additional, Neale, Benjamin, additional, Daly, Mark, additional, Martin, Alicia, additional, Huang, Hailiang, additional, Yuan, Kai, additional, Stevens, Christine, additional, Chapman, Sinead, additional, and Buxbaum, Joseph, additional

Published
2022
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6. High-throughput RNA isoform sequencing using programmable cDNA concatenation

Author

Al’Khafaji, Aziz M., primary, Smith, Jonathan T., additional, Garimella, Kiran V, additional, Babadi, Mehrtash, additional, Sade-Feldman, Moshe, additional, Gatzen, Michael, additional, Sarkizova, Siranush, additional, Schwartz, Marc A., additional, Popic, Victoria, additional, Blaum, Emily M., additional, Day, Allyson, additional, Costello, Maura, additional, Bowers, Tera, additional, Gabriel, Stacey, additional, Banks, Eric, additional, Philippakis, Anthony A., additional, Boland, Genevieve M., additional, Blainey, Paul C., additional, and Hacohen, Nir, additional

Published
2021
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7. Low-coverage sequencing cost-effectively detects known and novel variation in underrepresented populations

Author

Martin, Alicia R., primary, Atkinson, Elizabeth G., additional, Chapman, Sinéad B., additional, Stevenson, Anne, additional, Stroud, Rocky E., additional, Abebe, Tamrat, additional, Akena, Dickens, additional, Alemayehu, Melkam, additional, Ashaba, Fred K., additional, Atwoli, Lukoye, additional, Bowers, Tera, additional, Chibnik, Lori B., additional, Daly, Mark J., additional, DeSmet, Timothy, additional, Dodge, Sheila, additional, Fekadu, Abebaw, additional, Ferriera, Steven, additional, Gelaye, Bizu, additional, Gichuru, Stella, additional, Injera, Wilfred E., additional, James, Roxanne, additional, Kariuki, Symon M., additional, Kigen, Gabriel, additional, Koenen, Karestan C., additional, Kwobah, Edith, additional, Kyebuzibwa, Joseph, additional, Majara, Lerato, additional, Musinguzi, Henry, additional, Mwema, Rehema M., additional, Neale, Benjamin M., additional, Newman, Carter P., additional, Newton, Charles R.J.C., additional, Pickrell, Joseph K., additional, Ramesar, Raj, additional, Shiferaw, Welelta, additional, Stein, Dan J., additional, Teferra, Solomon, additional, van der Merwe, Celia, additional, and Zingela, Zukiswa, additional

Published
2021
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