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2. Analyses of Expressed Sequence Tags from Apple

Author

Newcomb, Richard D., Crowhurst, Ross N., Gleave, Andrew P., Rikkerink, Erik H. A., Allan, Andrew C., Beuning, Lesley L., Bowen, Judith H., Gera, Emma, Jamieson, Kim R., Janssen, Bart J., Laing, William A., McArtney, Steve, Nain, Bhawana, Ross, Gavin S., Snowden, Kimberley C., Souleyre, Edwige J. F., Walton, Eric F., and Yauk, Yar-Khing

Published
2006
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3. Abstracts of presentations on plant protection issues at the Third World Avocado Congress Abstracts of lectures OnLiriomyza spp. presented at a Shoshana Yathom Memorial Meeting: October 22-27, 1995 Dan Panorama Hotel, Tel Aviv, Israel December 28, 1995 ARO, The Volcani Center, Bet Dagan, Israel

Author

Stevens, Philippa S., McKenna, Cathy E., Steven, David, Waite, Geoff, Swirski, E., Wysoki, M., Izhar, Y., Fuks, Y., Rene, S., Hadar, D., Rosen, David, Blumberg, D., Kuslitzky, W., Ben-Yehuda, S., Schnell, R. J., Harkins, D. M., Kuhn, D. N., Zilberstaine, Miriam, Ben-Ya’acov, A., Sela, I., Gallo-Llobet, Luisa, Siverio, Felipe, Duvenhage, Riaan, Köhne, Stefan, Pozniak, Dina, Pinkas, Y., Faber, Ben, Downer, James, Menge, John, Ohr, Howard, Muñoz-Carpena, Rafael, López-Herrera, C. J., Basallote-Ureba, M. J., Pérez-Jiménez, R. M., Verdú-Valiente, B., Melero-Vara, J. M., Perez-Jiménez, R. M., Garcéa-Faraco, J., Korsten, Lise, de Villiers, Erika E., de Jager, Elisabeth S., Towsen, Estelle, Kotzé, Jan M., van Wyngaardt, Sandra, Verschoor, Jan A., Ardi, R., Kobiler, Ilana, Prusky, D., Freeman, S., Rodriguez, R., Keen, N. T., Grech, N., Campbell, S., Zauberman, G., Fuchs, Y., Steinhardt, R., Kalmar, D., Miari, A., Lahav, E., Wiesman, Z., Elgart, Irina, Bernstein, Nirit, Meiri, A., Woolf, Allan B., Ball, Sarah, White, Anne, Spooner, Karen J., Watkins, Chris B., Bowen, Judith H., Lay-Yee, Michael, Ferguson, Ian B., Lurie, S., Klein, J. D., Handros, A., Ackerman, M., Sakovich, Nicholas, Witney, Guy, Martin, Gray, Bijzet, Zelda, Sippel, Arthur, Snijder, Bram, Breedt, Hannes, Cilliers, Ben, Lopez Lopez, Luis, Rubi Arriaga, Martin, Barrientos Priego, Alejandro, Ben-Ya’acv, Avraham D., Bufler, Gebhard, Solis Molina, Abraham, Ben-Yakir, D., Chen, M., Weintraub, Phyllis G., Horowitz, A. R., Ishaaya, I., and Mansour, Y.

Published
1996
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5. Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening

Author

Richardson Annette C, Rassam Maysoon, McNeilage Mark A, Nain Bhawana, MacDiarmid Robin M, Lo Kim R, Klages Karin, Janssen Bart J, Hellens Roger P, Gera Emma, Fraser Lena G, Ferguson A Ross, Eckloff Rheinhart, Davy Marcus W, Bowen Judith H, Boldingh Helen L, Allan Andrew C, Usadel Björn, Schaffer Robert J, Newcomb Richard D, Montefiori Mirco, Matich Adam J, Marsh Ken B, Chagne David, Bulley Sean M, Beuning Lesley L, Atkinson Ross G, Ampomah-Dwamena Charles, MacRae Elspeth A, Gleave Andrew P, Crowhurst Ross N, Rikkerink Erik HA, Ross Gavin S, Schröder Roswitha, Snowden Kimberley C, Souleyre Edwige JF, Templeton Matt D, Walton Eric F, Wang Daisy, Wang Mindy Y, Wang Yanming Y, Wood Marion, Wu Rongmei, Yauk Yar-Khing, and Laing William A

Subjects
Biotechnology, TP248.13-248.65, Genetics, QH426-470
Abstract

Abstract Background Kiwifruit (Actinidia spp.) are a relatively new, but economically important crop grown in many different parts of the world. Commercial success is driven by the development of new cultivars with novel consumer traits including flavor, appearance, healthful components and convenience. To increase our understanding of the genetic diversity and gene-based control of these key traits in Actinidia, we have produced a collection of 132,577 expressed sequence tags (ESTs). Results The ESTs were derived mainly from four Actinidia species (A. chinensis, A. deliciosa, A. arguta and A. eriantha) and fell into 41,858 non redundant clusters (18,070 tentative consensus sequences and 23,788 EST singletons). Analysis of flavor and fragrance-related gene families (acyltransferases and carboxylesterases) and pathways (terpenoid biosynthesis) is presented in comparison with a chemical analysis of the compounds present in Actinidia including esters, acids, alcohols and terpenes. ESTs are identified for most genes in color pathways controlling chlorophyll degradation and carotenoid biosynthesis. In the health area, data are presented on the ESTs involved in ascorbic acid and quinic acid biosynthesis showing not only that genes for many of the steps in these pathways are represented in the database, but that genes encoding some critical steps are absent. In the convenience area, genes related to different stages of fruit softening are identified. Conclusion This large EST resource will allow researchers to undertake the tremendous challenge of understanding the molecular basis of genetic diversity in the Actinidia genus as well as provide an EST resource for comparative fruit genomics. The various bioinformatics analyses we have undertaken demonstrates the extent of coverage of ESTs for genes encoding different biochemical pathways in Actinidia.

Published
2008
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6. Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

Author

McArtney Steve, Ledger Susan, Gleave Andrew P, Crowhurst Ross N, Bowen Judith H, Balakrishnan Lena, Bishop Rebecca, Alba Rob, Schaffer Robert J, Thodey Kate, Janssen Bart J, Pichler Franz B, Snowden Kimberley C, and Ward Shayna

Subjects
Botany, QK1-989
Abstract

Abstract Background Apple fruit develop over a period of 150 days from anthesis to fully ripe. An array representing approximately 13000 genes (15726 oligonucleotides of 45–55 bases) designed from apple ESTs has been used to study gene expression over eight time points during fruit development. This analysis of gene expression lays the groundwork for a molecular understanding of fruit growth and development in apple. Results Using ANOVA analysis of the microarray data, 1955 genes showed significant changes in expression over this time course. Expression of genes is coordinated with four major patterns of expression observed: high in floral buds; high during cell division; high when starch levels and cell expansion rates peak; and high during ripening. Functional analysis associated cell cycle genes with early fruit development and three core cell cycle genes are significantly up-regulated in the early stages of fruit development. Starch metabolic genes were associated with changes in starch levels during fruit development. Comparison with microarrays of ethylene-treated apple fruit identified a group of ethylene induced genes also induced in normal fruit ripening. Comparison with fruit development microarrays in tomato has been used to identify 16 genes for which expression patterns are similar in apple and tomato and these genes may play fundamental roles in fruit development. The early phase of cell division and tissue specification that occurs in the first 35 days after pollination has been associated with up-regulation of a cluster of genes that includes core cell cycle genes. Conclusion Gene expression in apple fruit is coordinated with specific developmental stages. The array results are reproducible and comparisons with experiments in other species has been used to identify genes that may play a fundamental role in fruit development.

Published
2008
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8. Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening

Author

Crowhurst, Ross N, primary, Gleave, Andrew P, additional, MacRae, Elspeth A, additional, Ampomah-Dwamena, Charles, additional, Atkinson, Ross G, additional, Beuning, Lesley L, additional, Bulley, Sean M, additional, Chagne, David, additional, Marsh, Ken B, additional, Matich, Adam J, additional, Montefiori, Mirco, additional, Newcomb, Richard D, additional, Schaffer, Robert J, additional, Usadel, Björn, additional, Allan, Andrew C, additional, Boldingh, Helen L, additional, Bowen, Judith H, additional, Davy, Marcus W, additional, Eckloff, Rheinhart, additional, Ferguson, A Ross, additional, Fraser, Lena G, additional, Gera, Emma, additional, Hellens, Roger P, additional, Janssen, Bart J, additional, Klages, Karin, additional, Lo, Kim R, additional, MacDiarmid, Robin M, additional, Nain, Bhawana, additional, McNeilage, Mark A, additional, Rassam, Maysoon, additional, Richardson, Annette C, additional, Rikkerink, Erik HA, additional, Ross, Gavin S, additional, Schröder, Roswitha, additional, Snowden, Kimberley C, additional, Souleyre, Edwige JF, additional, Templeton, Matt D, additional, Walton, Eric F, additional, Wang, Daisy, additional, Wang, Mindy Y, additional, Wang, Yanming Y, additional, Wood, Marion, additional, Wu, Rongmei, additional, Yauk, Yar-Khing, additional, and Laing, William A, additional

Published
2008
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9. Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

Author

Janssen, Bart J, primary, Thodey, Kate, additional, Schaffer, Robert J, additional, Alba, Rob, additional, Balakrishnan, Lena, additional, Bishop, Rebecca, additional, Bowen, Judith H, additional, Crowhurst, Ross N, additional, Gleave, Andrew P, additional, Ledger, Susan, additional, McArtney, Steve, additional, Pichler, Franz B, additional, Snowden, Kimberley C, additional, and Ward, Shayna, additional

Published
2008
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15. Abstracts of presentations on plant protection issues at the Third World Avocado Congress Abstracts of lectures OnLiriomyzaspp. presented at a Shoshana Yathom Memorial Meeting

Author

Stevens, Philippa S., McKenna, Cathy E., Steven, David, Waite, Geoff, Swirski, E., Wysoki, M., Izhar, Y., Fuks, Y., Rene, S., Hadar, D., Rosen, David, Blumberg, D., Kuslitzky, W., Ben-Yehuda, S., Schnell, R. J., Harkins, D. M., Kuhn, D. N., Zilberstaine, Miriam, Ben-Ya’acov, A., Sela, I., Gallo-Llobet, Luisa, Siverio, Felipe, Duvenhage, Riaan, Köhne, Stefan, Pozniak, Dina, Pinkas, Y., Faber, Ben, Downer, James, Menge, John, Ohr, Howard, Muñoz-Carpena, Rafael, López-Herrera, C. J., Basallote-Ureba, M. J., Pérez-Jiménez, R. M., Verdú-Valiente, B., Melero-Vara, J. M., Perez-Jiménez, R. M., Garcéa-Faraco, J., Korsten, Lise, de Villiers, Erika E., de Jager, Elisabeth S., Towsen, Estelle, Kotzé, Jan M., van Wyngaardt, Sandra, Verschoor, Jan A., Ardi, R., Kobiler, Ilana, Prusky, D., Freeman, S., Rodriguez, R., Keen, N. T., Grech, N., Campbell, S., Zauberman, G., Fuchs, Y., Steinhardt, R., Kalmar, D., Miari, A., Lahav, E., Wiesman, Z., Elgart, Irina, Bernstein, Nirit, Meiri, A., Woolf, Allan B., Ball, Sarah, White, Anne, Spooner, Karen J., Watkins, Chris B., Bowen, Judith H., Lay-Yee, Michael, Ferguson, Ian B., Lurie, S., Klein, J. D., Handros, A., Ackerman, M., Sakovich, Nicholas, Witney, Guy, Martin, Gray, Bijzet, Zelda, Sippel, Arthur, Snijder, Bram, Breedt, Hannes, Cilliers, Ben, Lopez Lopez, Luis, Rubi Arriaga, Martin, Barrientos Priego, Alejandro, Ben-Ya’acv, Avraham D., Bufler, Gebhard, Solis Molina, Abraham, Ben-Yakir, D., Chen, M., Weintraub, Phyllis G., Horowitz, A. R., Ishaaya, I., and Mansour, Y.

Published
1996
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