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Ovulation synchronization protocols are well established and are routinely used in beef livestock systems. In addition to the genetic gain provided using fixed-time artificial insemination (TAI), there is an optimization in production in bovine females that are submitted to this reproduction biotechnique. In Bos indicus cows created in extensive system, a long period of postpartum anestrus is observed due to factors inherent to the presence of the calf and the negative energy balance. Therefore, the main advantage of using hormonal treatments after calving is to anticipate the first ovulation and the return to cyclicity. However, the final response to the TAI protocol based on estrogen (E2) and progesterone (P4) is approximately 80% in suckled Bos indicus beef cows. Hormonal strategies, such as the use of P4 and energy/protein supplementation prior to the TAI protocol, are used to increase the reproductive efficiency of these females. Furthermore, the correct time to start the TAI protocol after calving to optimize productivity and the duration of exposure to P4 during the TAI protocol directly impacts bovine fertility and will be discussed. [ABSTRACT FROM AUTHOR]

We aimed to evaluate the metabolic and performance differences in primiparous Nellore cows, which became pregnant at 14 or 24-mo old. Thirty-eight cows with 202 ± 5 days of gestation were divided into two treatments according to breeding age: 14 or 24-mo. Cows were evaluated for body weight (BW), body condition score (BCS), carcass characteristics, milk yield, calves’s performance, and blood characteristics. The animals were managed in eight paddocks under continuous grazing and evaluated from 90 d before parturition until 240 d after calving. We observed an interaction between breeding age and time (P < 0.01) for cow BW. Both breeding age categories experienced BW loss during parturition, with a concurrent decrease in BCS. However, following their first calving, the BW of 24-mo cows remained stable (P > 0.05), whereas 14-mo cows exhibited a gradual recovery in BW after parturition (P < 0.05). Milk yield was greater in 24-mo animals (P < 0.01), but decreased with increasing milking days (p < 0.05) for both groups. The weight gain calves from the heifers bred at 24-mo was greater (P < 0.01), which reflected in greater BW at weaning. The beta-hydroxybutyrate (β-OHB) concentration was greater before calving and a marked decrease after parturition (P < 0.05). The 24-mo cows had greater blood β-OHB (P < 0.01) at prepartum and 30 days after calving. Blood progesterone was greater in 24-mo cows (P > 0.05). Primiparous beef cows that conceive at either 14 or 24-months of age exhibit distinct nutritional requirements and metabolic profiles. Notably, cows that conceive at 24-months of age have the advantage of weaning heavier calves and displaying a more consistent reproductive cycle following their first calving than cows that conceive at 14-months. [ABSTRACT FROM AUTHOR]

Count traits are usually explored in livestock breeding programs, and they usually do not fit into normal distribution, requiring alternatives to adjust the phenotype to estimate accurate genetic parameters and breeding values. Alternatively, distribution such as Poisson can be used to evaluate count traits. This study aimed to compare and discuss the genetic evaluation for oocyte and embryo counts considering Gaussian (untransformed variable — LIN; transformed by logarithm — LOG; transformed by Anscombe — ANS) and Poisson (POI) distributions. The data comprised 11,343 total oocytes (TO), viable oocytes (VO), cleaved embryos (CE), and viable embryo (VE) records of ovum pick-up from 1740 Dairy Gir heifers and cows. The genetic parameters and breeding values were estimated by the MCMCglmm package of the R software. The posterior means of heritability varied from 0.40 (LIN) to 0.49 (POI) for TO, 0.39 (LIN) to 0.49 (POI) for VO, 0.30 (LOG) to 0.41 (POI) for cleaved embryos, and 0.19 (LIN) to 0.32 (POI) for viable embryos. The posterior means of repeatability varied from 0.56 (LIN) to 0.65 (POI) for TO, 0.53 (LOG) to 0.63 (POI) for VO, 0.44 (LOG) to 0.60 (POI) for CE, and 0.36 (LOG) to 0.56 (POI) for VE. Deviance information criterion and mean squared residuals indicated that POI model should be used for the genetic evaluation of embryo and oocyte count traits. Spearman's rank correlation between estimated breeding value (EBV) for embryo and oocyte count traits computed by POI, LOG, and ANS models was high (ranging from 0.77 to 0.99), indicating little reranking among the best animals. The POI model is the most adequate for genetic evaluation, resulting in more reliable EBV of oocyte and embryo count traits for Dairy Gir cattle. [ABSTRACT FROM AUTHOR]

This study aimed to investigate functional variants in chromosome 14 (BTA14) and its impact in genomic selection for birth weight (BW), weaning weight (WW), and yearling weight (YW) in Nellore cattle. Genetic parameter estimation and the weighted single‐step genomic best linear unbiased prediction (WssGBLUP) analyses were performed. Direct additive heritability estimates were high for WW and YW, and moderate for BW. Trait‐associated variants distributed across multiple regions on BTA14 were observed in the weighted single‐step genome‐wide association studies (WssGWAS) results, implying a polygenic genetic architecture for weight in different ages. Several genes have been found in association with the weight traits, including the CUB And Sushi multiple domains 3 (CSMD3), thyroglobulin (TG), and diacylglycerol O‐acyltransferase 1 (DGAT1) genes. The variance explained per SNP was higher in six functional classes of gene regulatory regions (5UTR, CpG islands, downstream, upstream, long non‐coding RNA, and transcription factor binding sites (TFBS)), highlighting their importance for weight traits in Nellore cattle. A marginal increase in accuracy was observed when the selected functional variants (SV) information was considered in the WssGBLUP method, probably because of the small number of SV available on BTA14. The identified genes, pathways, and functions contribute to a better understanding of the genetic and physiological mechanisms regulating weight traits in the Nellore breed. [ABSTRACT FROM AUTHOR]

This study evaluated the efficiency of a rapid reinsemination program allowing timed AI (TAI) every 21d (ReBreed21) in a commercial beef cow-calf operation. Nelore females from different parities (n = 2085) were synchronized for first TAI (D0 = TAI) using an estradiol/progesterone (E2/P4) protocol and assigned to one of three reinsemination programs: Resynch33 (n = 753), traditional resynch program with second TAI at D42 after first TAI; ReBreed21 (n = 687); or ReBreed21+EC (n = 670). The ReBreed females (n = 1357) received intravaginal P4 insert on D12, on D19 P4 was removed, and a dose of equine chorionic gonadotropin (eCG) was administered, then, ReBreed21 females received 0.6 mg of EC (ReBreed21+EC) or nothing (ReBreed21) and on D21, nonpregnancy (NP) was determined using Doppler ultrasound to detect corpus luteum (CL) blood flow (BF) (NP: <25 % BF pixels of total CL area) and NP cows received immediate TAI and GnRH to induce ovulation. Pregnancy diagnosis was performed at D33 after TAI following all TAIs. Cows considered pregnant at D21, based on CL BF, but NP on D33 were designated False-Positives (FP) and false negatives (FN) were number of nonpregnant cows/heifers on d21 based on the CL BF found to subsequently be pregnant on D33 divided by the total number pregnant. Pregnancy/AI (P/AI) did not differ for the first TAI (55.1 %) among the treatments. Heifers had similar P/AI at the second AI in all groups and similar to the first AI. Primiparous had greater P/AI in ReBreed21+EC and Resynch33 at s TAI compared to ReBreed21, 51.7 %, 55.8 %, 34.2 %, respectively. Multiparous had greater P/AI at second TAI in Resynch33 (60.9 %) than ReBreed21 programs (34.7 %). The percentage FP and FN among ReBreed21 programs did not differ, 13.8 and 0.2 %, respectively. Overall accumulative pregnancies on D21 of the breeding season were greater for ReBreed21 and ReBreed21+EC than Resynch33 (69.7 %, 71.6 %, and 55.5 %, respectively). However, on D42 of the breeding season, only heifers had greater pregnancies in ReBreed21 programs than Resynch33 (73.3 %, 74.3.6 %, and 63.2 %, respectively). Average days to pregnancy were less (P = 0.01) for ReBreed21 and ReBreed21+EC than Resynch33. Thus, the ReBreed21 strategy can improve the efficiency of TAI programs in beef cattle. Of interest, ReBreed21 was particularly effective in nulliparous, somewhat effective in primiparous when EC was added to the program, but relatively ineffective in multiparous beef cattle. • ReBreed21 increased cumulative pregnancies at D21 of breeding season in all parities. • Heifers had earlier pregnancies and more pregnancies on D42 using ReBreed21 programs. • Adding estradiol cypionate to ReBreed21 increased pregnancy/AI in primiparous cows. • Primiparous cows had earlier pregnancy using ReBreed21+EC than Resynch33. [ABSTRACT FROM AUTHOR]

Background: The selection of individuals based on their predicted breeding values and mating of related individuals can increase the proportion of identical-by-descent alleles. In this context, the objectives of this study were to estimate inbreeding coefficients based on alternative metrics and data sources such as pedigree (FPED), hybrid genomic relationship matrix H (FH), and ROH of different length (FROH); and calculate Pearson correlations between the different metrics in a closed Nellore cattle population selected for body weight adjusted to 378 days of age (W378). In addition to total FROH (all classes) coefficients were also estimated based on the size class of the ROH segments: FROH1 (1–2 Mb), FROH2 (2–4 Mb), FROH3 (4–8 Mb), FROH4 (8–16 Mb), and FROH5 (> 16 Mb), and for each chromosome (FROH_CHR). Furthermore, we assessed the effect of each inbreeding metric on birth weight (BW), body weights adjusted to 210 (W210) and W378, scrotal circumference (SC), and residual feed intake (RFI). We also evaluated the chromosome-specific effects of inbreeding on growth traits. Results: The correlation between FPED and FROH was 0.60 while between FH and FROH and FH and FPED were 0.69 and 0.61, respectively. The annual rate of inbreeding was 0.16% for FPED, 0.02% for FH, and 0.16% for FROH. A 1% increase in FROH5 resulted in a reduction of up to -1.327 ± 0.495 kg in W210 and W378. Four inbreeding coefficients (FPED, FH, FROH2, and FROH5) had a significant effect on W378, with reductions of up to -3.810 ± 1.753 kg per 1% increase in FROH2. There was an unfavorable effect of FPED on RFI (0.01 ± 0.0002 kg dry matter/day) and of FROH on SC (-0.056 ± 0.022 cm). The FROH_CHR coefficients calculated for BTA3, BTA5, and BTA8 significantly affected the growth traits. Conclusions: Inbreeding depression was observed for all traits evaluated. However, these effects were greater for the criterion used for selection of the animals (i.e., W378). The increase in the genomic inbreeding was associated with a higher inbreeding depression on the traits evaluated when compared to pedigree-based inbreeding. Genomic information should be used as a tool during mating to optimize control of inbreeding and, consequently, minimize inbreeding depression in Nellore cattle. [ABSTRACT FROM AUTHOR]

Simple Summary: The study aimed to estimate growth curves and genetic parameters for Nellore cattle using a random regression methodology. The dataset included 6974 calves raised in Pantanal, MS, Brazil, and 53,233 weight records, with at least four weighings per individual. The model considered direct and maternal genetic additive effects and maternal permanent environmental effects at random. Cubic orthogonal Legendre polynomials were used to fit the growth curve, with fixed effects of sex, year of birth, farm, calf birth month, and cow age at calving. The mean weights at 120 and 205 days were 93.43 kg and 180.42 kg, respectively. Animals born in the dry season had higher average weights, leading to higher weights at 646 days. Direct heritabilities ranged from 0.35 to 0.75, while maternal heritabilities were low (0.03 to 0.08). Random regression effectively adjusts growth curves and aids in selecting superior animals for breeding. The objective was to estimate the growth curves and genetic parameters using random regression methodology for Nellore cattle raised in Pantanal, MS, Brazil (6974 calves; n = 53,233 weights), with at least four weighings per individual. The model considered direct and maternal genetic additives and maternal permanent environmental effects at random. Orthogonal Legendre polynomials of cubic order were used to fit the growth curve. Analyses of variance were performed using the GLM procedure. The model used contained the fixed effects of sex, year of birth, farm, and the covariates calf birth month (linear and quadratic) and cow age at calving (linear and quadratic). The adjusted mean weight at 120 days of age was 93.43 ± 19.78 kg, and for 205 days of age, it was 180.42 ± 26.58 kg. Animals born in the dry season had a higher average weight [kg] (219.57 vs. 211.78, 3.7% higher) and, consequently, had higher weights at 646 days of age. Estimates of direct heritabilities (h2a) ranged from 0.35 to 0.75 (high magnitudes), and maternal heritabilities (h2m) along the trajectory of low magnitudes ranged from 0.03 to 0.08, respectively. The use of random regression to evaluate beef animals allows for adjusting the growth curve and selecting the best animals to be the parents of future generations. [ABSTRACT FROM AUTHOR]

Abstract Background The selection of individuals based on their predicted breeding values and mating of related individuals can increase the proportion of identical-by-descent alleles. In this context, the objectives of this study were to estimate inbreeding coefficients based on alternative metrics and data sources such as pedigree (FPED), hybrid genomic relationship matrix H (FH), and ROH of different length (FROH); and calculate Pearson correlations between the different metrics in a closed Nellore cattle population selected for body weight adjusted to 378 days of age (W378). In addition to total FROH (all classes) coefficients were also estimated based on the size class of the ROH segments: FROH1 (1–2 Mb), FROH2 (2–4 Mb), FROH3 (4–8 Mb), FROH4 (8–16 Mb), and FROH5 (> 16 Mb), and for each chromosome (FROH_CHR). Furthermore, we assessed the effect of each inbreeding metric on birth weight (BW), body weights adjusted to 210 (W210) and W378, scrotal circumference (SC), and residual feed intake (RFI). We also evaluated the chromosome-specific effects of inbreeding on growth traits. Results The correlation between FPED and FROH was 0.60 while between FH and FROH and FH and FPED were 0.69 and 0.61, respectively. The annual rate of inbreeding was 0.16% for FPED, 0.02% for FH, and 0.16% for FROH. A 1% increase in FROH5 resulted in a reduction of up to -1.327 ± 0.495 kg in W210 and W378. Four inbreeding coefficients (FPED, FH, FROH2, and FROH5) had a significant effect on W378, with reductions of up to -3.810 ± 1.753 kg per 1% increase in FROH2. There was an unfavorable effect of FPED on RFI (0.01 ± 0.0002 kg dry matter/day) and of FROH on SC (-0.056 ± 0.022 cm). The FROH_CHR coefficients calculated for BTA3, BTA5, and BTA8 significantly affected the growth traits. Conclusions Inbreeding depression was observed for all traits evaluated. However, these effects were greater for the criterion used for selection of the animals (i.e., W378). The increase in the genomic inbreeding was associated with a higher inbreeding depression on the traits evaluated when compared to pedigree-based inbreeding. Genomic information should be used as a tool during mating to optimize control of inbreeding and, consequently, minimize inbreeding depression in Nellore cattle.

Abstract Objectives Bovine seminal plasma proteins perform several functions related to sperm function. Changes in the expression pattern or abundance of seminal proteins are related to changes in the fertilizing capacity of bulls. Considering the role of seminal plasma proteins in sperm function and animal reproduction, we investigated changes in the protein abundance profile in response to sperm morphological changes using a proteomic approach. Datadescription In our present investigation, we employed liquid chromatography coupled with mass spectrometry to elucidate the proteomic composition of seminal plasma obtained from Nellore bulls exhibiting varying percentages of sperm abnormalities. Following semen collection, seminal plasma was promptly isolated from sperm, and proteins were subsequently precipitated, enzymatically digested using porcine trypsin, and subjected to analysis utilizing the Acquity nano UHPLC System in conjunction with a mass spectrometer. This dataset encompasses a total of 297 proteins, marking the inaugural instance in which a comparative profile of seminal plasma proteins in young Nellore bulls, categorized by their sperm abnormality percentages, has been delineated using LC-MS/MS. The comprehensive nature of this dataset contributes pivotal proteomic insights, representing a noteworthy advancement in our understanding of the reproductive biology of the Nellore breed.

ABSTRACT: Anti-Müllerian hormone (AMH) concentration and number of recovered oocytes (ROOC) are phenotypic parameters associated with in vitro embryo production (IVEP). More recently, anogenital distance (AGD) has been proposed as a proxy for fertility in dairy cattle that is easy to collect at a low cost. The aim of this study was to characterize the AGD and its phenotypic and genetic associations with AMH and IVEP in Bos indicus Gyr dairy cattle. The hypothesis was that the number of ROOC, in vitro–produced embryos, and AMH concentration would increase as the AGD decreases. From July to December 2021, a single morphometrical measurement of AGD was collected in 552 donors from 6 herds in Brazil. A subset of donors had AMH assayed on the same day. Only ovum pick-up events that occurred up to 12 mo preceding and 7 mo succeeding the AGD measurement were used to assess the association between AGD, AMH, and IVEP. Thus, 472 donors (1,551 ovum pick-up events and 140 donors with AMH) were considered in the analysis. A raw average was calculated for each individual donor's ROOC, viable oocytes, total produced embryos, viability rate, and embryo rate (defined as total produced embryos/viable oocytes). Comparisons were conducted within the age categories of 3 to

Prior studies in beef cattle have shown shifts in the reproductive microbiome prior to artificial insemination (AI), yet few have characterized both the reproductive microbiome and immune responses prior to AI, particularly in purebred Bos indicus. Therefore, the aim of this study was to characterize the circulating cytokines and the vaginal microbiome of Bos indicus females prior to fixed-time artificial insemination (FTAI). Bos indicus females (n = 79) on four separate ranch operations within a 20-mile radius in East Texas were subjected to the 7-day CO-Synch + controlled intervaginal drug-releasing (CIDR) protocol beginning on day (d)-9 with FTAI on d0. Blood samples were collected on d-9 (CIDR IN), d-2 (CIDR OUT), and d0 (AI DAY) for cytokine concentration analyses using the RayBiotech Quantibody Bovine Cytokine Array Q1 kit per the manufacturer's instructions. Sterile vaginal swabs were inserted past the vulva, rotated, and stored at -80°C for microbiome analysis. Bacterial community analyses targeted the V4 hypervariable region of the 16S rRNA gene. Pregnancy status was determined by transrectal ultrasonography approximately 60 days after FTAI for resulting open females (n = 45) and pregnant females (n = 34). Regardless of pregnancy status, the vaginal relative abundance of Firmicutes differed between CIDR IN, CIDR OUT, and AI DAY (63.74% vs. 28.31% vs. 60.86% ± 3.66%, respectively; P < 0.01). Genera with phylum Firmicutes including Ruminococcus, Clostridium, Blautia, Butyrvibrio, and Mogibacterium followed a similar trend (P < 0.05). Butyrvibrio tended to have greater relative abundance in the vaginal samples of Cows than Heifers (4.17% ± 0.75% vs. 3.26% ± 0.77%;P=0.07). Concentrations of the interferon (IFN)g (2005.98 ± 471.94 pg/mL vs. 1185.40 ± 482.65 pg/mL; P < 0.01), interleukin (IL)1F5 (153.89 ± 141.07 pg/mL vs. 627.30 ± 149.28 pg/mL; P < 0.01), and interferon gamma-induced protein (IP)10 (9363.26 ± 2929.83 pg/mL vs. 5905.53 ± 2983.60 pg/mL; P = 0.05) were greater in Cows than Heifers. There was a parity-by-status interaction for IP10, with Open Cows having the greatest concentration compared all other groups (P < 0.05). These results indicate differences in circulating cytokines and shifts in the vaginal microbiome for in Bos indicus cattle prior to FTAI. [ABSTRACT FROM AUTHOR]

Objectives: Bovine seminal plasma proteins perform several functions related to sperm function. Changes in the expression pattern or abundance of seminal proteins are related to changes in the fertilizing capacity of bulls. Considering the role of seminal plasma proteins in sperm function and animal reproduction, we investigated changes in the protein abundance profile in response to sperm morphological changes using a proteomic approach. Datadescription: In our present investigation, we employed liquid chromatography coupled with mass spectrometry to elucidate the proteomic composition of seminal plasma obtained from Nellore bulls exhibiting varying percentages of sperm abnormalities. Following semen collection, seminal plasma was promptly isolated from sperm, and proteins were subsequently precipitated, enzymatically digested using porcine trypsin, and subjected to analysis utilizing the Acquity nano UHPLC System in conjunction with a mass spectrometer. This dataset encompasses a total of 297 proteins, marking the inaugural instance in which a comparative profile of seminal plasma proteins in young Nellore bulls, categorized by their sperm abnormality percentages, has been delineated using LC-MS/MS. The comprehensive nature of this dataset contributes pivotal proteomic insights, representing a noteworthy advancement in our understanding of the reproductive biology of the Nellore breed. [ABSTRACT FROM AUTHOR]

The present study evaluated follicular and endocrine dynamics during ReBreed21, a reproductive strategy that allows resynchronization of ovulation every 21 days in Bos indicus (Nelore) heifers. A synchronized estrous cycle was induced using a standard timed ovulation protocol (d −10: P4 implant inserted + 2 mg estradiol benzoate; d −2: P4 removed+ 0.5 mg cloprostenol + 0.6 mg estradiol cypionate + 200 IU equine chorionic gonadotropin (eCG); d0: 8.4 μg buserelin) without AI to ensure nonpregnancy in heifers. Day of GnRH was designated d0 of estrous cycle. On d12, heifers (n = 80) were randomized into three experimental groups: (1) ReBreed21 (n = 28) d12 P4 device inserted, d19 P4 device withdrawal plus 200 IU eCG, and d21 8.4 μg buserelin (GnRH); (2) ReBreed21+G (n = 26) same as ReBreed21 plus GnRH (16.8 μg) treatment on d12; and (3) Control (n = 26) no treatment. ReBreed21+G increased two-fold (62.9%; 18/26) percentage of heifers with synchronized follicular wave emergence compared to Control (34.6%; 9/26) whereas ReBreed21 (53.6%; 15/28) was intermediate. The ReBreeed21 groups (eCG on d19) increased (P < 0.01) follicular growth between d19 and d21 in ReBreed21 (2.3 ± 0.2 mm) and ReBreed21+G (3.4 ± 0.2 mm) compared with Control (1.2 ± 0.3 mm), resulting in greater (P < 0.01) follicle diameter on d21 for ReBreed21 (10.7 ± 0.4 mm) and ReBreed21+G (10.8 ± 0.4 mm) compared with Control (9.1 ± 0.5 mm). Structural luteolysis was similar among groups (P = 0.51), although the average day when P4 was <1 ng/mL was later (P < 0.01) for ReBreed21 (20.5 ± 0.2) and ReBreed21+G (20.7 ± 0.2) compared to Control (19.2 ± 0.4). Overall ovulation at the end of the estrous cycle was increased (P = 0.03) for ReBreed21 groups (83.3%; 45/54) compared with Control (57.7%; 15/26). Synchronized ovulation on day 22–23 was greater (P < 0.01) for ReBreed21 (78.6%; 22/28) and ReBreed21+G (76.9%; 20/26) compared with Control (30.8%; 8/26). Thus, the ReBreed21 resynchronization program produced acceptable endocrine and follicular dynamics, including synchronized ovulation at the end of the protocol in nonpregnant heifers providing good rationale for testing the fertility and practical implementation of this protocol under field conditions. • The P4 device maintained P4 concentrations and prevented early ovulation. • ReBreed21 strategy (P4+eCG) increased follicle growth rate (d19-21) vs. Control. • ReBreed21 had more synchronized ovulation (d22/23) than Controls (78 vs 27%). • ReBreed21 allows a timed ovulation in nonpregnant Bos indicus heifers every 21 days. [ABSTRACT FROM AUTHOR]

The cattle in the Pantanal region show a notable influence from Bos indicus breeds and their crossbreeds. However, a comprehensive biometric assessment of the reproductive system in these animals is currently lacking. This study evaluated the effects of breed, age, carcass weight, and estrous cycle phase on female reproductive system morphometry. A total of 124 healthy, non-pregnant reproductive tracts (83 Nelore and 41 Crossbred) were collected at a slaughterhouse. Neither the volume and weight of the ovaries nor the majority of uterine dimensions were affected by breed. Compared to heifers, cows showed longer uterine horns, a larger external caudal diameter of the uterine horns and body, and a greater external cranial diameter and internal caudal diameter of the cervix. The carcass weight (below vs. within commercial weight) affected the length of the uterine horns, uterine body, and cervix. Ovaries with a corpus luteum presented higher volume and weight than those with only follicles. Although the uterine measurements in the luteal phase were increased, the cycle stage did not affect the uterine morphometry. The average number of cervical rings was 5.0, independent of weight or breed. Crossbred animals presented a higher first cervical ring. Age didn´t influence the number, height, or distance between cervical rings. Deviation from the normal alignment of the cervix was recorded in 14.29 % of the animals, with a higher occurrence among Nelore cattle; deviation from the median axis was the most common (30%). This study emphasizes various parameters influencing the morphometry of the female reproductive system in Nelore cattle and their crosses, which could be crucial for implementing reproductive biotechnology techniques better suited to the morphological characteristics of zebu breeds. [ABSTRACT FROM AUTHOR]

Kangayam cattle are one of the drought breeds in India with distinct attributes. Agricultural transformation has led to a decline in many pure-breed indigenous cattle, including the Kangayam breed. Hence, a study on the reproductive physiology of male Kangayam breed cattle is necessary to disentangle problems in the area of livestock improvement. In this study, we investigated the relationship between serum hormones and bio-constituents and ascertained the potential of saliva as an indicator of the reproductive status of Kangayam cattle (Bos indicus). The present study confirms that cholesterol was higher in intact males and lower in prepubertal and castrated males. Testosterone levels were also higher in intact males than in castrated or prepubertal males. Hence, it can be inferred that high cholesterol levels contribute to active derivatization of testosterone in intact males. In contrast, reduced cholesterol availability leads to decreased testosterone synthesis in castrated and prepubertal males. Furthermore, it is reasonable to speculate that testosterone could have influenced salivary fern patterns in intact males, and thus, fern-like crystallization in the saliva was apparent. The unique salivary compounds identified through GC-MS across various reproductive statuses of Kangayam males may advertise their physiological status to conspecifics. In addition, the presence of odorant-binding protein (OBP) in saliva further supports its role in olfactory communication. This study attested to a posssible interlink between gonadal status and serum biochemical profiles. The salivary fern pattern revealed in this study can be used as a predictive tool, and the presence of putative volatiles and OBP adds evidence to the role of saliva in chemical communication. [ABSTRACT FROM AUTHOR]

The Cholistani cow is considered one of the milch breeds of Zebu cattle. Despite being heat and tick-resistant, it has not yet gained much popularity among Pakistan dairy farmers due to its long calving interval. This study aimed to understand the basic reproductive physiology of Cholistani cows using sonography and reproductive biotechnologies such as estrus synchronization and timed artificial insemination to improve reproductive efficiency. In experiment 1, six Cholistani cows with mixed parity 3.20 ± 1.30 and weighing 400 kg were selected to monitor ovarian dynamics on alternate days by the same sonographer from the onset of heat through ovulation until the next ovulation. Experiment 2 measured the effect of estrus synchronization methods, controlled internal drug release-gonadotropin-releasing hormone (CIDR-GnRH, n = 31) and Ovsynch (OVS, n = 32) on various reproductive parameters. The mean estrous cycle length was 19.81 ± 0.56 days with two follicular waves. The mean interovulatory interval was 20.80 ± 0.52 days, with a preovulatory follicular size of 13.83 ± 2.37 mm. Estrus response was higher (p > 0.05) in controlled internal drug release (CIDR)-GnRH (93.54%) than in OVS (84.37%) cows. Similarly, ovulation and conception rates were higher in CIDR-GnRH (91.66% vs. 68.42%) than in OVS cows (41.37% vs. 33.33%), respectively. In conclusion, CIDR-GnRH results in a better estrus response, higher ovulation rate, and subsequently greater conception rate than OVS in Bos indicus dairy cows. [ABSTRACT FROM AUTHOR]

Anti-Müllerian hormone (AMH) concentration and number of recovered oocytes (ROOC) are phenotypic parameters associated with in vitro embryo production (IVEP). More recently, anogenital distance (AGD) has been proposed as a proxy for fertility in dairy cattle that is easy to collect at a low cost. The aim of this study was to characterize the AGD and its phenotypic and genetic associations with AMH and IVEP in Bos indicus Gyr dairy cattle. The hypothesis was that the number of ROOC, in vitro–produced embryos, and AMH concentration would increase as the AGD decreases. From July to December 2021, a single morphometrical measurement of AGD was collected in 552 donors from 6 herds in Brazil. A subset of donors had AMH assayed on the same day. Only ovum pick-up events that occurred up to 12 mo preceding and 7 mo succeeding the AGD measurement were used to assess the association between AGD, AMH, and IVEP. Thus, 472 donors (1,551 ovum pick-up events and 140 donors with AMH) were considered in the analysis. A raw average was calculated for each individual donor's ROOC, viable oocytes, total produced embryos, viability rate, and embryo rate (defined as total produced embryos/viable oocytes). Comparisons were conducted within the age categories of 3 to <6 yr or 6 to <10 yr. Phenotypic associations were performed in SAS software (SAS Institute Inc., Cary, NC). Genetic correlations were estimated using the BLUPF90 family of programs. The AGD (128.7 mm ± 14; mean ± standard deviation) had a normal distribution and was highly variable (83 to 172 mm) among the Gyr population. Our experimental hypothesis was partially supported by a phenotypic association of a greater number of total produced embryos (R2 = 0.023) as AGD decreased. Our results failed to support an increase in AMH concentration along with a decrease in AGD. In addition, positive and low genetic correlations were observed between AGD and viable oocytes (r = 0.08), and embryo rate (r = 0.20). A greater number of viable oocytes and embryos were observed in donors in the high compared with intermediate and low ROOC categories within both age categories. The age interval of 3 to <6 yr showed a greater number of recovered and viable oocytes for the high AMH compared with the low category, but no differences were observed among the AGD categories. In summary, for the Gyr breed, AGD was phenotypically inversely associated with a quantity-related parameter, such as the total number of produced embryos. In contrast, AGD showed a low genetic correlation with qualitative-related outcomes such as viable oocytes and embryo rate. Further studies should be performed to validate these retrospective analyses and to better understand the association between AGD and IVEP. [ABSTRACT FROM AUTHOR]

In Brazil, heifers typically calve at 36–48 months. Due to the high demand for meat and the need to reduce slaughter age, high supplementation has become commonly used in beef cattle farming. However, the literature remains scarce on studies that explore the impact of grazing management during the background phase on the productivity and reproductive efficiency of young Nellore heifers. This study aimed to evaluate the effects of two-herbage allowances (HA) on forage characteristics, performance, physiology and reproductive parameters of replacement Nellore heifers. Ninety weaned heifers [169 ± 19 kg of shrunk body weight (SBW); 210 ± 28 days of age] were blocked by initial BW and randomly assigned to receive different HA: (1) High herbage allowance (HHA: 7.2 kg DM/kg BW) and (2) Low herbage allowance (LHA: 3.3 kg DM/kg BW); and divided into six paddocks, totaling 12 paddocks. The experimental period was divided into the growing phase (D173) and the reproductive season (D83). Continuous stocking with a variable stocking rate was used. The supplement was provided daily with expected intake of around 10 g/kg of BW. The HHA pasture showed greater values of canopy height, greater HA, and lower values of CP and CP: in vitro digestible DM ratio than the LHA pasture over the days of the study (P ≤ 0.05). Herbage mass and the green stem proportion were lower in LHA pasture (P

Abstract Background Feeding costs represent the largest expenditures in beef production. Therefore, the animal efficiency in converting feed in high-quality protein for human consumption plays a major role in the environmental impact of the beef industry and in the beef producers’ profitability. In this context, breeding animals for improved feed efficiency through genomic selection has been considered as a strategic practice in modern breeding programs around the world. Copy number variation (CNV) is a less-studied source of genetic variation that can contribute to phenotypic variability in complex traits. In this context, this study aimed to: (1) identify CNV and CNV regions (CNVRs) in the genome of Nellore cattle (Bos taurus indicus); (2) assess potential associations between the identified CNVR and weaning weight (W210), body weight measured at the time of selection (WSel), average daily gain (ADG), dry matter intake (DMI), residual feed intake (RFI), time spent at the feed bunk (TF), and frequency of visits to the feed bunk (FF); and, (3) perform functional enrichment analyses of the significant CNVR identified for each of the traits evaluated. Results A total of 3,161 CNVs and 561 CNVRs ranging from 4,973 bp to 3,215,394 bp were identified. The CNVRs covered up to 99,221,894 bp (3.99%) of the Nellore autosomal genome. Seventeen CNVR were significantly associated with dry matter intake and feeding frequency (number of daily visits to the feed bunk). The functional annotation of the associated CNVRs revealed important candidate genes related to metabolism that may be associated with the phenotypic expression of the evaluated traits. Furthermore, Gene Ontology (GO) analyses revealed 19 enrichment processes associated with FF. Conclusions A total of 3,161 CNVs and 561 CNVRs were identified and characterized in a Nellore cattle population. Various CNVRs were significantly associated with DMI and FF, indicating that CNVs play an important role in key biological pathways and in the phenotypic expression of feeding behavior and growth traits in Nellore cattle.

Summary: This research aimed to evaluate the influence of different high‐intensity ultrasound (HIU) levels (control: 0; low: 276.36; moderate: 422.67; and high: 747.79 W cm−2) and stored in aerobic conditions for 7 days at 4 ± 1 °C on instrumental colour, metmyoglobin reducing activity (MRA), oxidative stability and texture of Longissimus lumborum (LL) from Nellore (Bos indicus) cattle. HIU moderate level samples exhibited higher (P < 0.05) lipid and protein oxidation, whereas high level showed higher MRA than control, low and moderate level counterparts. An increase (P < 0.05) of hue angle, MRA, lipid, and protein oxidation during refrigerated storage. Overall, the HIU levels did not influence pH, colour, texture, lipid, and protein oxidation, whereas HIU high level (HIU‐HL) improved the MRA contributing to beef colour stability. [ABSTRACT FROM AUTHOR]

This experiment evaluated pregnancy losses from day 30 of gestation to calving in Bos indicus females, and evaluated if serum haptoglobin concentrations during early gestation impacts subsequent pregnancy losses. A total of 4926 Nelore females were used, being 1802 nulliparous heifers inseminated as yearlings (precocious heifers), 1356 nulliparous heifers inseminated at 24 months of age (conventional heifers), 887 suckling primiparous cows, and 881 suckling multiparous cows. Cows were assigned to an ovulation synchronization + fixed-time artificial insemination (FTAI) protocol from day −11 to 0 of the experiment. Pregnancy status was verified using transrectal ultrasonography on days 30 and 60 after FTAI, via transrectal palpation on day 150 after FTAI, and according to calf birth. Blood samples were collected from all animals diagnosed pregnant on day 30 after FTAI, and analyzed for serum concentrations of haptoglobin and pregnancy associated glycoproteins (PAG). Pregnancy loss was greater (P < 0.01) from day 60–150 of gestation (10.2 %) compared with day 30–60 of gestation (6.0 %) and with day 150 of gestation to calving (7.4 %), and differed (P = 0.04) between these latter two periods. Pregnancy loss from day 30–60 of gestation did not differ (P = 0.26) among parities, whereas total pregnancy losses (day 30 to calving) were greater (P < 0.01) in precocious (28.4 %) and conventional (27.1 %) heifers compared with primiparous (16.4 %) and multiparous (13.0 %) cows. Serum PAG concentrations on day 30 after FTAI were less (P ≤ 0.03) in cows that lost the pregnancy (5.63 ng/mL) from day 30–60 of gestation, as well as those that lost the pregnancy from day 30 to calving (8.59 ng/mL) compared with cohorts that maintained the pregnancy (9.39 and 9.32 ng/mL, respectively). No differences in serum PAG concentrations on day 30 after FTAI were noted (P ≥ 0.23) according to pregnancy losses from day 60 to calving. Serum haptoglobin concentration on day 30 after FTAI also did not differ (P ≥ 0.48) between cows that maintained or lost the pregnancy. This experiment provides novel information about pregnancy losses after day 30 of gestation in B. indicus cattle, with most losses occurring as fetal mortality and not affected by systemic inflammation during early gestation. Pregnancy losses were nearly doubled in precocious and conventional heifers compared with parous cows, demonstrating the relevance of this reproductive failure to B. indicus replacement heifers. • Pregnancy loss is a major reproductive challenge in cow-calf operations. • Bos indicus females lost 22.1 % of the pregnancies after day 30 of gestation. • Most of these losses were caused by fetal mortality from day 60–150 of gestation. • Nulliparous heifers experienced greater pregnancy losses than parous cows. • Heifers inseminated as yearlings had the lowest reproductive rates among parities. [ABSTRACT FROM AUTHOR]

In vitro embryo production systems in buffaloes have great productive perspectives and opportunities for improvement. Among these, comparative studies with species with more significant advances in reproductive biotechnology have been developed. Accordingly, this work aimed to identify the differences in the electrophoretic profiles of proteins in the follicular fluid (FF) of cows and buffaloes and their possible association with follicle size. FF was obtained at the central abattoir in Medellín (Antioquia), Colombia, from small (<7 mm) and large (>7 mm) follicles from the ovaries of 25 cows (Bos indicus) and 20 buffaloes (Bubalus bubalis). The total protein content of the FF was quantified and subsequently depleted of albumin and immunoglobulins. Samples were subjected to denaturing electrophoresis in sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) to determine the electrophoretic profiles using a photodocumenter. The values obtained for the relative amount of each band were compared between species and follicle sizes using the Mann-Whitney test. The results showed no significant differences in total protein concentration between the different follicle sizes and species. Further, 72.6% of the FF proteins are immunoglobulins and albumin. The profiles of small follicles (<7mm) in cows presented 19 bands and 11 in buffaloes. The molecular weight range of the bands detected was between 5 and 250 kDa. Quantitative differences of the proteins in the follicular fluids evaluated were identified. The information obtained may contribute to elucidating the physiological differences between large and small follicles but does not explain the differences between species. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the effects of prepartum supplementation levels on the productive and nutritional performance and metabolic responses of Nellore cows in a grazing system. Forty-four pregnant Nellore cows multiparous with an initial mean gestation time of 230 days, average initial body weight (BW) of 541 ± 19 kg, and body condition score (BCS) of 5.5 ± 1.7 were used and distributed in a completely randomized design, with four treatments and 11 cows per treatment. The treatments evaluated consisted of four supplementation levels in the prepartum period with a duration of 60 days, according to the following scheme: 0.0 (Control = CON); 0.5 (LOW); 1.0 (Medium = MED) and; 1.5 (High = HIG) kg per animal day-1 of supplement. The supplement was composed of wheat meal and urea, and formulated to contain 22% of crude protein (CP). A positive linear effect (P < 0.05) was observed on the intake of CP and CP:digested organic matter (DOM) ratio as supplementation levels were increased. In addition, a quadratic effect (P < 0.05) was detected on the intake of neutral detergent fiber corrected for ash and protein (apNDF), digested neutral detergent fiber, and DOM with increasing supplementation levels in the prepartum period, in which MED cows had higher intakes compared to CON, LOW, and HIG cows. Prepartum supplementation levels did not affect (P > 0.10) the average daily gain in the prepartum or postpartum periods and, BCS of the dams, and BW of calves at birth or 45 days of age. In the prepartum period, supplementation levels did not affect (P > 0.10) the blood concentrations of total proteins, albumin, globulins, glucose, cholesterol, triglycerides, non-esterified fatty acids, and beta-hydroxybutyrate in the experimental cows. In conclusion, the provision of 1.0 kg of supplement per animal per day during the last 60 days of pregnancy improves prepartum nutritional performance and postpartum milk production of grazing beef cows.

Prior studies in beef cattle have shown shifts in the reproductive microbiome prior to artificial insemination (AI), yet few have characterized both the reproductive microbiome and immune responses prior to AI, particularly in purebred Bos indicus. Therefore, the aim of this study was to characterize the circulating cytokines and the vaginal microbiome of Bos indicus females prior to fixed-time artificial insemination (FTAI). Bos indicus females (n = 79) on four separate ranch operations within a 20-mile radius in East Texas were subjected to the 7-day CO-Synch + controlled intervaginal drug-releasing (CIDR) protocol beginning on day (d)-9 with FTAI on d0. Blood samples were collected on d-9 (CIDR IN), d-2 (CIDR OUT), and d0 (AI DAY) for cytokine concentration analyses using the RayBiotech Quantibody Bovine Cytokine Array Q1 kit per the manufacturer’s instructions. Sterile vaginal swabs were inserted past the vulva, rotated, and stored at -80°C for microbiome analysis. Bacterial community analyses targeted the V4 hypervariable region of the 16S rRNA gene. Pregnancy status was determined by transrectal ultrasonography approximately 60 days after FTAI for resulting open females (n = 45) and pregnant females (n = 34). Regardless of pregnancy status, the vaginal relative abundance of Firmicutes differed between CIDR IN, CIDR OUT, and AI DAY (63.74% vs. 28.31% vs. 60.86% ± 3.66%, respectively; P < 0.01). Genera with phylum Firmicutes including Ruminococcus, Clostridium, Blautia, Butyrvibrio, and Mogibacterium followed a similar trend (P < 0.05). Butyrvibrio tended to have greater relative abundance in the vaginal samples of Cows than Heifers (4.17% ± 0.75% vs. 3.26% ± 0.77%; P = 0.07). Concentrations of the interferon (IFN)γ (2005.98 ± 471.94 pg/mL vs. 1185.40 ± 482.65 pg/mL; P < 0.01), interleukin (IL)1F5 (153.89 ± 141.07 pg/mL vs. 627.30 ± 149.28 pg/mL; P < 0.01), and interferon gamma-induced protein (IP)10 (9363.26 ± 2929.83 pg/mL vs. 5905.53 ± 2983.60 pg/mL; P = 0.05) were greater in Cows than Heifers. There was a parity-by-status interaction for IP10, with Open Cows having the greatest concentration compared all other groups (P < 0.05). These results indicate differences in circulating cytokines and shifts in the vaginal microbiome for in Bos indicus cattle prior to FTAI.

ABSTRACT This study aimed to investigate the profile of AMH serum concentrations during the period of prepuberty in young bulls. The bulls were selected and evaluated for 150 days to assess their sexual development. The semen and blood collection, body weight (kg), and scrotal measurements were performed every 30 days, and puberty (D0) was considered when at least 50×106 spermatozoa/mL, and 10% of progressive motility were verified for the first time. After the blood collection, plasma was separated and used to determine the AMH concentration by ELISA, presenting values of 611.4a (±94.5), 555a (±181.99), 621.6ab (±133.44), 370.4ab (±59.36) and 51.7b (±7.94) for moments of -60, -30, 0, +30 and +60 of puberty, respectively. During the evaluated period, there was a progressive increase in body weight (kg), scrotal circumference (cm), and semen characteristics. The AMH mean plasma concentration decreased 60 days after puberty onset. There was no correlation with the andrological parameters analyzed; however, there was a positive and strong correlation between the testicular height and width at puberty onset with plasma concentrations of AMH. We concluded that AMH is not a helpful tool for the early prediction of puberty in Nelore bulls.

The objective was to estimate the growth curves and genetic parameters using random regression methodology for Nellore cattle raised in Pantanal, MS, Brazil (6974 calves; n = 53,233 weights), with at least four weighings per individual. The model considered direct and maternal genetic additives and maternal permanent environmental effects at random. Orthogonal Legendre polynomials of cubic order were used to fit the growth curve. Analyses of variance were performed using the GLM procedure. The model used contained the fixed effects of sex, year of birth, farm, and the covariates calf birth month (linear and quadratic) and cow age at calving (linear and quadratic). The adjusted mean weight at 120 days of age was 93.43 ± 19.78 kg, and for 205 days of age, it was 180.42 ± 26.58 kg. Animals born in the dry season had a higher average weight [kg] (219.57 vs. 211.78, 3.7% higher) and, consequently, had higher weights at 646 days of age. Estimates of direct heritabilities (h2a) ranged from 0.35 to 0.75 (high magnitudes), and maternal heritabilities (h2m) along the trajectory of low magnitudes ranged from 0.03 to 0.08, respectively. The use of random regression to evaluate beef animals allows for adjusting the growth curve and selecting the best animals to be the parents of future generations.

Genome-wide deleterious mutations were identified in zebu cattle (Bos indicus) using in silico approach. The ddRAD sequence data of Sahiwal cattle were annotated and aligned with the cattle reference genome (ARS-UCD1.2). A total of 279,383 SNPs were identified at Read Depth10, which were further filtered to 692 missense SNPs. These SNPs were further analyzed, for functional consequences, by using Variant Effect Predictor, PolyPhen, PROVEAN, and PANTHER tools. A total of 18 SNPs, were finally identified as deleterious, and among these, 12 SNPs were mapped on nine different genes. ERRAT, ProSA-web, Project HOPE, TM-Align, and YASSARA tools, further confirmed the protein malfunctioning of one missense (L290V) mutation of Retinoblastoma binding protein-5 (RBBP5) gene, transcribing a cell cycle regulatory protein and associated with Retinoblastoma in human. This derived bioinformatics pipeline may be useful for preliminarily identifying the deleterious DNA mutations in livestock, specifically in absence of any genetic disease records. [ABSTRACT FROM AUTHOR]

This study aimed to characterize estrus response and to establish relationships between intensity of estrus, preovulatory follicle (POF) size and estradiol (E2) concentrations on day of AI, luteal profiles and pregnancy outcome in lactating Hariana breed of cows. 200 cyclic cows were subjected to Ovsynch (n = 54) and Pre-OV treatment (n = 146). Ovsynch: Buserelin acetate (BA; 10 µg), Cloprostenol (500 µg) and BA (10 µg) were injected i.m. on day 0, 7 and 9, respectively, irrespective of treatment. Pre-OV: BA (10 µg) and Cloprostenol (500 µg) was also injected i.m. simultaneously 7 days prior to initiate Ovsynch. On the basis of estrus behavior, the cows were classified into three groups: weak, moderate and intense. Artificial insemination performed at 18–24 hours after 2nd BA of Ovsynch in both treatments. The average duration of estrus did not differ (p > 0.05) between Ovsynch and Pre-OV treatment. A positive correlation was observed between estrus response and POF size, concentration of E2 on day of AI and luteal profiles on day 12 post-AI. First service conception rate was higher in cows exhibited intense (45.46%) and moderate (42.56%) estrus response than weak (28.57%) estrus response. In conclusion, intensity of estrus expression could be considered as important determinant for deciding pregnancy outcomes in Bos indicus cows. [ABSTRACT FROM AUTHOR]

Fertility is an important trait associated with reproductive performance and animal welfare concern. Lethal alleles affect fertility through early embryonic death, abortions, and stillbirth depending on the genetic expression of the allele. Holstein Friesian and Jersey are two major Bos taurus breeds used widely for increasing milk yield along with purebreds of Bos indicus breeds like Gir, Kankrej, Sahiwal, and Tharparkar. In the present study, prevalence of lethal mutants in crossbred Holstein Friesian (CBHF, n = 2435), crossbred Jersey (CBJY, n = 2874), Gir (n = 3288), Kankrej (n = 593), Sahiwal (n = 965), and Tharparkar (n = 18) were studied. Heterozygous carrier animals were identified for bovine leukocyte adhesion deficiency (BLAD), Citrullinemia, complex vertebral malformation (CVM), Brachyspina, Holstein Haplotype 1 (HH1), Holstein Haplotype 3 (HH3), Holstein Haplotype 4 (HH4) and Jersey Haplotype 1 (JH1). Breed purity analysis confirmed inheritance of Bos taurus genes contributing to the presence of lethal mutant alleles like BLAD, Citrullinemia, HH1, and JH1 in apparently phenotypic Bos indicus animals. Screening and elimination of heterozygous carrier bulls/cows is essential to control fertility loss associated with lethal alleles. [ABSTRACT FROM AUTHOR]

Susceptibility to classical bovine spongiform encephalopathy (BSE) has been linked to 23 bp indel in promoter and 12 bp indel in the first intron of cattle prion protein gene. This study aimed to investigate 23/12 bp indel polymorphisms in the polymorphisms in cattle prion protein (PRNP) gene to reveal the risk of BSE in Ethiopian cattle. Also, frequency of each polymorphism was compared to the other Bos taurus and Bos indicus breeds. According to results, the insertion variant was detected at a low frequency in all of the study populations at both loci. The 23 bp insertion allele in Fogera breed was relatively lower than Borona and Arsi and the same allele at the same locus in Afar breed was higher than the rest of the breeds (0.16). Due to high linkage disequilibrium (LD) of the deletion allele in Bos taurus, the frequencies of deletion allele at 23 bp (0.84) and 12 bp (0.86) loci in Afar breed were relatively closer than the rest of the breeds. In addition, DD/DD was found as the highly frequent diplotype in all of the breeds. The low frequency of insertion alleles at 23 and 12 bp indel sites demonstrate that Ethiopian cattle have a genetically high risk for BSE. [ABSTRACT FROM AUTHOR]

In order to estimate the Basic Quality Grade of beef carcasses according to bone maturity, marbling and Bos indicus racial predominance, data from 1,417 carcasses processed in four Federal Inspection Type establishments were analyzed. The following variables were recorded: cavitary fat, rib eye area, dorsal fat thickness, hump length and height, marbling, and bone maturity. Using the variables marbling and bone maturity, the Basic Grade of Quality was estimated in accordance with the norm NOM-004-SAGARPA-2018. The hump height was used as a criterion to determine racial predominance, and four groups were generated from this information. Based on the recorded values, descriptive statistics, analysis of variance, comparison of means, and Tukey's test were determined. The hump height in each group was 7.19, 10.54, 14.38, and 20.11 cm (P<0.01), respectively. 82 % of the carcasses were predominantly Bos indicus. The hot carcass weight was 310.05 kg for group 1 vs 326.99 kg for group 4 (P<0.01). The rib eye area was 85.59 cm² for group 1 vs 89.14 cm² for group 2 (P<0.05). Of the total number of carcasses evaluated, 60 were classified as Supreme quality (4.23 %), 655 as Select quality (46.22 %), 621 as Standard quality (43.82 %), and 81 as Commercial quality (5.72 %). The beef carcasses in this study have mainly a Bos indicus breed component, and their Basic Quality Grade corresponded primarily to a greater number of carcasses with grade A bone maturity, but with less marbling. [ABSTRACT FROM AUTHOR]

This article discusses the development of genetically improved tropical-adapted dairy cattle, focusing on the challenges and potential solutions for increasing productivity in tropical regions. It explores the traits of interest from different genetic groups and the success of strategic breeding programs, such as the Girolando breed in Brazil. The article also highlights the University of Illinois Tropical-Adapted Cattle Project in Tanzania, which aims to enhance the livestock sector and improve livelihoods in the country. It addresses the specific challenges faced by Tanzania, including low livestock productivity, feed scarcity, and climate change, and emphasizes the importance of the Maasai people and their cultural significance in cattle raising. The report provides a comprehensive analysis of the topic and is a valuable resource for library patrons conducting research in this area. [Extracted from the article]

The objectives were to evaluate non-linear models (NLM) to define the growth curve of Brahman cattle in Mexico. The database was derived from weight development control, with live weight measurements (150,932 in females and 286,804 in males) taken in the interval from birth to 1095 days of age. Four NLM were evaluated: Brody, Bertalanffy, Gompertz and Logistic. The selection of the NLM with the best adjustment was made based on the Akaike and Bayesian information criteria. Growth parameters were generated: adult weight (AW), growth rate (GR), correlation (ϒ) between AW and GR, age and weight at the inflection point, evolution of live weight (as a percentage of adult weight), maturity level, daily growth rate (DGR; kg/day). The model with the best fit was Brody, followed by Bertalanffy. For AW, the average value was 787.2 kg for males and 592.1 kg for females; for GR, the average values (%) were 0.28 for males and 0.25 for females. All ϒ were less than -0.90. The DGR, for males presented values in the range of 0.347 to 0.786 and a mean of 0.537; for females, the mean was 0.424 with values in the range of 0.274 to 0.620. Heifers at 15 months of age reach an average weight of 287 kg, representing 57.7% of the adult weight. The growth analysis shows the response and/or adaptation to tropical livestock, based on a growth curve with a constant growth rate and no inflection point.

The objectives were to characterize the lactation curves (LC) of tropical Gyr and Sardo Negro (SN) cattle from Mexico for the design of breeding and management programs for these breeds. A total of 3561 records of 504 lactations and 3927 records of 449 lactations were used for Gyr and SN, respectively. Three lactation lengths (LL) were evaluated, namely 240 (240d), 270 (270d), and 300 (300d) days, with five non-linear models (NLM): Wood, Wiltmink, Cobby, Brody, and Sikka. Milk production was obtained at the beginning (PI; kg), daily average (PMD; kg), maximum at peak (PMX; kg), days to reach maximum production (DP), and accumulated total (PT; kg). The selection of models was made based in the Akaike and Bayesian information criteria. The NLM explained at least 88% of the variability in the data. Brody model provided the best fit for 240d and 270d, and Sikka for 300d in SN; for Gyr, Wood model showed the best fit for 240d and 270d, while Wiltmink had the best fit for 300d. The means for PMD were 5.3 kg in SN and 10.2 kg in Gyr; for PMX the averages were 6.9 kg and 12.7 kg, respectively. The average of PT, within LL (240d, 270d, and 300d), was 1297 kg, 1418 kg, and 1552 kg for SN, and 2653 kg, 2930 kg, and 3202 kg for Gyr, respectively. The first third of the LC presented the highest contribution (%), with average values of 37.4 in Gyr and 39.5 in SN; the second and third periods, contributed (%) 33.5 and 29.1 in Gyr, and 33.0 and 27.5 in SN, respectively. The 240d LL, are the proposals for the design of management, feeding, and genetic improvement programs, they presented the best statistical adjustment in both breeds.

BackgroundRuminants harbor a complex microbial community within their gastrointestinal tract, which plays major roles in their health and physiology. Brazil is one of the largest producers of beef in the world and more than 90% of the beef cattle herds are composed of pure and crossbred Nelore (Bos indicus). Despite its importance to the Brazilian economy and human feeding, few studies have characterized the Nelore microbiome. Therefore, using shotgun metagenomics, we investigated the impact of diet on the composition and functionality of the Nelore microbiome, and explored the associations between specific microbial taxa and their functionality with feed efficiency and methane emission.ResultsThe ruminal microbiome exhibited significantly higher microbial diversity, distinctive taxonomic profile and variations in microbial functionality compared to the fecal microbiome, highlighting the distinct contributions of the microbiomes of these environments. Animals subjected to different dietary treatments exhibited significant differences in their microbiomes’ archaeal diversity and in the abundance of 89 genera, as well as in the functions associated with the metabolism of components of each diet. Moreover, depending on the diet, feed-efficient animals and low methane emitters displayed higher microbial diversity in their fecal microbiome. Multiple genera were associated with an increase or decrease of the phenotypes. Upon analyzing the functions attributed to these taxa, we observed significant differences on the ruminal taxa associated with feed efficient and inefficient cattle. The ruminal taxa that characterized feed efficient cattle stood out for having significantly more functions related to carbohydrate metabolism, such as monosaccharides, di−/oligosaccharides and amino acids. The taxa associated with methane emission had functions associated with methanogenesis and the production of substrates that may influence methane production, such as hydrogen and formate.ConclusionOur findings highlight the significant role of diet in shaping Nelore microbiomes and how its composition and functionality may affect production traits such as feed efficiency and methane emission. These insights provide valuable support for the implementation of novel feeding and biotechnological strategies.

In this study, 105 bacterial colonies were isolated from the feces of newborn healthy Bos indicus calves and 37 isolates were confirmed using morphological, biochemical tests, and genus-specific PCR as lactobacilli. 11 isolates were then short-listed for in vitro probiotic testing based on their ability to dwell under acid and bile stress. Species-level identification using 16S rRNA gene sequencing revealed that they were Ligilactobacillus salivarius. These isolates flourished in 0.4% phenol, depicting resistance in adverse conditions encountered in the gastrointestinal tract. The results of cell surface hydrophobicity were found to be 74.50% for RBL12 and 62.62% for RBL09 in hexadecane and xylene, respectively, and that of auto-aggregation was highest in RBL26 (58.92%). These isolates also produced digestive enzymes like amylase, protease, and β-galactosidase. Further assays reiterated their antimicrobial and coaggregation potential against diarrhea-causing pathogens like Escherichia coli ATCC-25922 and Salmonella arizonae ATCC-13314. Biosafety assessment revealed that none of the tested isolates were hemolytic and mucinolytic in nature. Furthermore, the antioxidant potential of the isolates was also confirmed using 1,1‑diphenyl‑2‑picrylhydrazyl (DPPH) and ferric ion-reducing antioxidant power (FRAP) assay. Along with efficient utilization of inulin, isolates showed promising adhesion ability to the HT-29 cell line. The current findings hence conclude that these Lactobacillus isolates can be exploited as animal probiotics for potential application in young calves to foster gut health and immunity. [ABSTRACT FROM AUTHOR]

The present investigation was performed to compare the global gene expression profile in peripheral blood mononuclear cells (PBMCs) of Bos indicus and crossbred (Bos taurus × B. indicus) cattle. Previously, several studies revealed the disease tolerance potential of B. indicus cattle but underlying genetic mechanism is still not fully explored. The PBMCs model was used for this investigation as it plays crucial role in the immune system regulation. Transcriptomic analysis revealed total 6767 significantly differentially expressed transcripts (fold change (absolute) >2.0, p <.05). In addition, 4149 transcripts were upregulated, 2618 transcripts were downregulated and fold change (absolute) of differentially expressed transcript varied from −223.32 to 213.63. Functional annotation analysis of differentially expressed genes confirmed their role in various molecular pathways viz. innate immune response, antigen processing and presentation, MHC protein complex, defense response to bacterium, regulation of immune response, positive regulation of JAK-STAT cascade, cytoskeletal protein binding, etc. Protein–protein interaction network analysis provided understanding of inter-relationship of immune genes with differentially expressed genes. In conclusion, this study could provide comprehensive information about the dysregulated genes and biological pathways in PBMCs which might be responsible for disease tolerance in B. indicus cattle. [ABSTRACT FROM AUTHOR]

Bovine lymphocyte antigen (BoLA) DRB3 locus in healthy and mastitis affected cattle has been genotyped by a polymerase chain reaction and restriction fragment length polymorphisms (PCR-RLFP) using RsaI restriction enzyme, followed by sequencing. In 130 farm animals, 25 BoLA DRB3 alleles have been detected by PCR-RFLP. Three distinct allelic patterns significantly associated with mastitis in Karan Fries crossbred and Sahiwal indicus cattle have been identified, whereas, four other allelic patterns were significantly high in frequency among healthy animals. Sequencing of RFLP genotypes revealed 25 and 47 alleles among healthy Sahiwal and Karan Fries, respectively, while 17 and 38 patterns observed in mastitis affected Sahiwal and Karan Fries animals, respectively. From Tajima's D-test of neutrality, it was concluded that alleles associated with mastitis were expanding in the population, whereas those of healthy were under contraction. Phylogenetic analysis carried out to delineate the evolutionary relationship of the farm and field animals at DRB3 locus, differentiating allelic patterns into six different clusters. Among the phylogenetic lineages, five patterns DRB3*028:01, DRB3*011:03, DRB3*031:01, DRB3*001:01 and DRB3*043:01, were previously reported, whereas one novel allelic variant was observed in indicus and crossbred cattle. This information will help in further exploring the association between BoLA-DRB3 genetic diversity and disease resistance in distinct cattle breeds, important in designing breeding strategies for increasing the distribution of favorable alleles. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the reproductive performance of Nellore suckled cows inseminated 55 (n = 304) or 65 (n = 296) h after progesterone (P4) removal in a 7-d protocol. The protocol consisted of the insertion of a device with 2 g of P4 and 2 mg of estradiol benzoate on d 0, with the device remaining in the cows for 7 d. Cows in the 55-h treatment had the P4 device removed in the morning, while cows in the 65-h treatment had the P4 device removed in the afternoon. At P4 removal, cows received intramuscularly 300 IU of eCG, 0.6 mg of estradiol cypionate and 0.52 mg cloprostenol sodium. Artificial insemination was performed according to treatments (55 vs. 65 h after P4 removal). The results of the study showed that the estrus detection rate (69% vs 65%) and pregnancy per AI (P/AI; 49% vs 49%) did no differ in cows inseminated 55 or 65 h after P4 removal, respectively. Furthermore, ovulation rate, the diameter of the largest follicle at the time of AI, and P4 concentration after AI were not affected by treatments. The probability of P/AI was not affected by parity, BCS, age, diameter of largest follicle at AI, days postpartum, BW and time to AI. This study suggests that performing AI from 55 to 65 h after the P4 removal in the 7-d-P4 protocol did not affect the reproductive performance in Nellore cows, and opens the possibility for producers to take more time to perform AI of cows in the field without affecting P/AI. [ABSTRACT FROM AUTHOR]

Context: Recent advances in molecular technology have allowed us to examine the cattle genome with an accuracy never before possible. Genetic variations, both small and large, as well as the transcriptional landscape of the bovine genome, have both been explored in many studies. However, the topological configuration of the genome has not been extensively investigated, largely due to the cost of the assays required. Such assays can both identify topologically associated domains and be used for genome scaffolding. Aims: This study aimed to implement a chromatin conformation capture together with long-read nanopore sequencing (Pore-C) pipeline for scaffolding a draft assembly and identifying topologically associating domains (TADs) of a Bos indicus Brahman cow. Methods: Genomic DNA from a liver sample was first cross-linked to proteins, preserving the spatial proximity of loci. Restriction digestion and proximity ligation were then used to join cross-linked fragments, followed by nucleic isolation. The Pore-C DNA extracts were then prepped and sequenced on a PromethION device. Two genome assemblies were used to analyse the data, namely, one generated from sequencing of the same Brahman cow, and the other is the ARS-UCD1.2 Bos taurus assembly. The Pore-C snakemake pipeline was used to map, assign bins and scaffold the draft and current annotated bovine assemblies. The contact matrices were then used to identify TADs. Key results: The study scaffolded a chromosome-level Bos indicus assembly representing 30 chromosomes. The scaffolded assembly showed a total of 215 contigs (2.6 Gbp) with N50 of 44.8 Mb. The maximum contig length was 156.8 Mb. The GC content of the scaffold assembly is 41 ± 0.02%. Over 50% of mapped chimeric reads identified for both assemblies had three or more contacts. This is the first experimental study to identify TADs in bovine species. In total, 3036 and 3094 TADs across 30 chromosomes were identified for input Brahman and ARS-UCD1.2 assemblies respectively. Conclusions: The Pore-C pipeline presented herein will be a valuable approach to scaffold draft assemblies for agricultural species and understand the chromatin structure at different scales. Implications: The Pore-C approach will open a new era of 3D genome-organisation studies across agriculture species. The availability of highly complete and contiguous genome assemblies in agricultural species will enable precise identification of genetic variations, from single nucleotide polymorphisms to large structural variants. Using Pore-C pipeline, the high-quality genome assembly for Bos indicus species and higher-order 3D chromatin structure are first provided in one assay, offering a precious resource for understanding gene regulation. The Pore-C approach will open a new era of 3D genome organisation studies across agriculture species. [ABSTRACT FROM AUTHOR]

Considering the growing accessibility of dried distillers grains with solubles (DDGS) in Brazil, coupled with the limited research examining its integration into conventional confinement diets in the southeast region, comprising ingredients such as flint corn, citrus pulp, and whole cottonseed, there is a clear imperative for conducting studies to deter- mine optimal inclusion levels of this product in such diets. The objective of the study was to compare the performance (experiment 1) and metabolism (experiment 2) of Nellore bulls finished with diets containing 0, 10, 20, 30, or 40% DDGS (% DM) in total replacement of whole cottonseed and partial replacement of ground flint corn and citrus pulp. In experiment 1, Nellore bulls [n = 368; body weight (BW) = 420 ± 30 kg] were used, allocated in 60 experimental pens for 125 d (n = 12 pens per treatment), evaluating variables such as dry matter intake, average daily gain (ADG), feed efficiency, observed net energy (NE) for maintenance and gain, and carcass characteristics. In experiment 2, rumen-cannulated Nellore bulls (n = 30; BW = 503 ± 46) were kept in individual pens for 21 d (n = 6 animals per treatment), evaluating ruminal parameters (proportion of short-chain fatty acids, ammonia concentration, ruminal pH) and apparent digestibility of nutrients in the total tract. The experimental design adopted was randomized blocks, and the data were analyzed using R v. 4.3.1 (R Core Team, 2023). Linear increases were observed in carcass adjusted final BW (P = 0.013), carcass adjusted ADG (P = 0.024), carcass adjusted feed efficiency (P = 0.0003), hot carcass weight (P = 0.0004), and dressing percentage (P < 0.0001) with the incremental inclusion of DDGS in the diets (Table 1). For every 10-percentage unit inclusion in these type of diets, hot carcass weight is increased by 2.56 kg. Additionally, the inclusion of DDGS resulted in linear increases in observed NE for maintenance (P = 0.001) and NE for gain (P = 0.001), calculated according to Zinn and Shen (1998). Digestibility out- comes, determined through the difference of nutrients present in the consumed diet and in the feces, exhibited linearly decreasing effects with the escalating inclusion of DDGS for dry matter (P = 0.004), organic matter (P = 0.004), neutral detergent fiber (P = 0.01), acid detergent fiber (P = 0.04), and total digestible nutrients (P = 0.004). We also observed linear increases for isobutyrate (P = 0.004) and isovalerate (P = 0.002) as the DDGS level in the diet increased. The 40% DDGS diet exhibited 0.6 mmol/100 mol and 0.7 mmol/100 mol more of isobutyrate and isovalerate, respectively, compared with the 0% DDGS diet. In summary, a high inclusion of DDGS emerges as a viable alternative in the nutrition of Bos indicus cattle fed diets containing ground flint corn and citrus pulp, manifesting significant improvements in performance and carcass quality. [ABSTRACT FROM AUTHOR]

Infertility due to pregnancy loss is a major issue leading to economic losses in cow-calf beef production. Furthermore, undernutrition is linked to infertility in cattle and is of most concern during times of extended drought periods and ever-increasing feed costs, such as today. Approximately 30% of cattle in the U.S. contain a portion of their genetic background of Bos indicus origin, and approximately 40% of beef cows and 50% of the cow-calf producers in the country are located in the southern U.S. where Bos indicus cattle and their crosses are located. Our research group has investigated differences in fertility and conceptus development between Bos indicus and Bos taurus cattle and there is evidence for differences in embryonic development and pregnancy establishment processes between Bos taurus and Bos indicus. In similar studies performed in Brazil and in the U.S., d 15 Bos indicus embryos averaged at 2.4 cm in length, while Bos taurus d 15 embryos averaged 11.4 cm in length. In addition, we determined that cows containing primarily Bos taurus genetics had larger fetuses at d 53 of pregnancy than cows with at least 20% Bos indicus genetics. These differences highlight the importance of performing controlled studies with direct comparisons between the two subspecies. Recent findings from our group indicate that Bos indicus cattle have improved fertility and embryonic survival under nutritional restriction when compared with Bos taurus cattle. Angus embryo transfer recipients submitted to a 70% nutritional restriction have increased pregnancy failure compared with Angus recipients in a maintenance diet and Brangus recipients in both restricted and maintenance diets. In addition, embryo recipients in the restricted diet that received an Angus embryo experienced greater pregnancy failure than recipients in the restricted diet receiving Brangus embryos, regardless of the recipient breed. Collectively, our results indicate that the magnitude of the detrimental effect of nutrient restriction differs between Bos taurus and Bos indicus cattle. Bos taurus genotype in both maternal and fetal systems decreased the probability of pregnancy when nutrient restriction was superimposed, indicating that Bos taurus cows were more susceptible to experience embryonic loss when exposed to the same negative plane of nutrition. There is a critical need to understand how the fetal-maternal crosstalk during early stages of pregnancy as well as the uterine environment differ between Bos taurus and Bos indicus cattle. [ABSTRACT FROM AUTHOR]

Abstract The objective of this work was to investigate whether puberty and parturition alter the antral follicle count (AFC) in female Nelore (Bos indicus) beef cattle. Two experiments were carried out to compare AFC between the prepubertal and pubertal periods and between the prepubertal and postpartum periods. AFC and follicle concentrations did not differ between the prepubertal and pubertal periods. However, the ovarian area increased after puberty. In addition, AFC and the ovarian area were greater in the postpartum than in the prepubertal period. Therefore, AFC is not affected by the puberty of Nelore heifers, but increases significantly when the prepubertal heifers become cows.

The objective of this study was to evaluate four different feeding strategies using an immunomodulatory feed additive for newly weaned Nellore cattle, before and after road transport, on their physiological parameters and performances during the growing phase of pastures. In total, eighty-four young Nellore bulls (initial BW = 174 ± 11 kg; 7 ± 1 months of age) were blocked by their initial body weights 42 days before road transport (d −42) and randomly assigned to one of the four supplementation strategies. The treatments were: (1) Control (CON): no immunomodulatory feed additive (NUTRA) supplementation; (2) NUTRA pre: the inclusion of NUTRA only in the pre-transport period (d −42 to d 0); (3) NUTRA post: the inclusion of NUTRA for 42 days, only in the post-transport period (d 0 to d 42); and (4) NUTRA growth: the inclusion of NUTRA during the whole experimental period (d −42 to d 210). On d 0, the calves were transported on dirty roads in a commercial livestock trailer for 200 km (8 h). There was no effect of the treatments on the animal performance or the physiological parameters in their plasma. However, there were effects on the day of the blood sampling for all the parameters. The highest concentration of cortisol was observed on d 3 post-transport (129 ng/mL) and this decreased over time (22.4 ng/mL; d 210). On the other hand, their glucose peaked at unloading, with lower concentrations on d 7 and d 14. Their total protein concentrations increased from d 0 to d 7. The immunomodulatory feed additive supplementation at 10 g/100 kg BW/day did not modulate the physiological responses in their plasma and did not influence the performance of the Nellore bulls during the growing phase of their pastures. [ABSTRACT FROM AUTHOR]