1,531 results on '"Bortoli P"'
Search Results
2. Observation of disorder-free localization and efficient disorder averaging on a quantum processor
- Author
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Gyawali, Gaurav, Cochran, Tyler, Lensky, Yuri, Rosenberg, Eliott, Karamlou, Amir H., Kechedzhi, Kostyantyn, Berndtsson, Julia, Westerhout, Tom, Asfaw, Abraham, Abanin, Dmitry, Acharya, Rajeev, Beni, Laleh Aghababaie, Andersen, Trond I., Ansmann, Markus, Arute, Frank, Arya, Kunal, Astrakhantsev, Nikita, Atalaya, Juan, Babbush, Ryan, Ballard, Brian, Bardin, Joseph C., Bengtsson, Andreas, Bilmes, Alexander, Bortoli, Gina, Bourassa, Alexandre, Bovaird, Jenna, Brill, Leon, Broughton, Michael, Browne, David A., Buchea, Brett, Buckley, Bob B., Buell, David A., Burger, Tim, Burkett, Brian, Bushnell, Nicholas, Cabrera, Anthony, Campero, Juan, Chang, Hung-Shen, Chen, Zijun, Chiaro, Ben, Claes, Jahan, Cleland, Agnetta Y., Cogan, Josh, Collins, Roberto, Conner, Paul, Courtney, William, Crook, Alexander L., Das, Sayan, Debroy, Dripto M., De Lorenzo, Laura, Barba, Alexander Del Toro, Demura, Sean, Di Paolo, Agustin, Donohoe, Paul, Drozdov, Ilya, Dunsworth, Andrew, Earle, Clint, Eickbusch, Alec, Elbag, Aviv Moshe, Elzouka, Mahmoud, Erickson, Catherine, Faoro, Lara, Fatemi, Reza, Ferreira, Vinicius S., Burgos, Leslie Flores, Forati, Ebrahim, Fowler, Austin G., Foxen, Brooks, Ganjam, Suhas, Gasca, Robert, Giang, William, Gidney, Craig, Gilboa, Dar, Gosula, Raja, Dau, Alejandro Grajales, Graumann, Dietrich, Greene, Alex, Gross, Jonathan A., Habegger, Steve, Hamilton, Michael C., Hansen, Monica, Harrigan, Matthew P., Harrington, Sean D., Heslin, Stephen, Heu, Paula, Hill, Gordon, Hilton, Jeremy, Hoffmann, Markus R., Huang, Hsin-Yuan, Huff, Ashley, Huggins, William J., Ioffe, Lev B., Isakov, Sergei V., Jeffrey, Evan, Jiang, Zhang, Jones, Cody, Jordan, Stephen, Joshi, Chaitali, Juhas, Pavol, Kafri, Dvir, Kang, Hui, Khaire, Trupti, Khattar, Tanuj, Khezri, Mostafa, Kieferová, Mária, Kim, Seon, Klimov, Paul V., Klots, Andrey R., Kobrin, Bryce, Korotkov, Alexander N., Kostritsa, Fedor, Kreikebaum, John Mark, Kurilovich, Vladislav D., Landhuis, David, Lange-Dei, Tiano, Langley, Brandon W., Laptev, Pavel, Lau, Kim-Ming, Guevel, Loïck Le, Ledford, Justin, Lee, Joonho, Lee, Kenny, Lester, Brian J., Li, Wing Yan, Lill, Alexander T., Liu, Wayne, Livingston, William P., Locharla, Aditya, Lundahl, Daniel, Lunt, Aaron, Madhuk, Sid, Maloney, Ashley, Mandrà, Salvatore, Martin, Leigh S., Martin, Steven, Martin, Orion, Maxfield, Cameron, McClean, Jarrod R., McEwen, Matt, Meeks, Seneca, Megrant, Anthony, Mi, Xiao, Miao, Kevin C., Mieszala, Amanda, Molina, Sebastian, Montazeri, Shirin, Morvan, Alexis, Movassagh, Ramis, Neill, Charles, Nersisyan, Ani, Newman, Michael, Nguyen, Anthony, Nguyen, Murray, Ni, Chia-Hung, Niu, Murphy Yuezhen, Oliver, William D., Ottosson, Kristoffer, Pizzuto, Alex, Potter, Rebecca, Pritchard, Orion, Pryadko, Leonid P., Quintana, Chris, Reagor, Matthew J., Rhodes, David M., Roberts, Gabrielle, Rocque, Charles, Rubin, Nicholas C., Saei, Negar, Sankaragomathi, Kannan, Satzinger, Kevin J., Schurkus, Henry F., Schuster, Christopher, Shearn, Michael J., Shorter, Aaron, Shutty, Noah, Shvarts, Vladimir, Sivak, Volodymyr, Skruzny, Jindra, Small, Spencer, Smith, W. Clarke, Springer, Sofia, Sterling, George, Suchard, Jordan, Szalay, Marco, Szasz, Aaron, Sztein, Alex, Thor, Douglas, Torunbalci, M. Mert, Vaishnav, Abeer, Vdovichev, Sergey, Vidal, Guifré, Heidweiller, Catherine Vollgraff, Waltman, Steven, Wang, Shannon X., White, Theodore, Wong, Kristi, Woo, Bryan W. K., Xing, Cheng, Yao, Z. Jamie, Yeh, Ping, Ying, Bicheng, Yoo, Juhwan, Yosri, Noureldin, Young, Grayson, Zalcman, Adam, Zhang, Yaxing, Zhu, Ningfeng, Zobrist, Nicholas, Boixo, Sergio, Kelly, Julian, Lucero, Erik, Chen, Yu, Smelyanskiy, Vadim, Neven, Hartmut, Kovrizhin, Dmitry, Knolle, Johannes, Halimeh, Jad C., Aleiner, Igor, Moessner, Roderich, and Roushan, Pedram
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Quantum Physics ,Condensed Matter - Disordered Systems and Neural Networks ,Condensed Matter - Strongly Correlated Electrons ,High Energy Physics - Lattice - Abstract
One of the most challenging problems in the computational study of localization in quantum manybody systems is to capture the effects of rare events, which requires sampling over exponentially many disorder realizations. We implement an efficient procedure on a quantum processor, leveraging quantum parallelism, to efficiently sample over all disorder realizations. We observe localization without disorder in quantum many-body dynamics in one and two dimensions: perturbations do not diffuse even though both the generator of evolution and the initial states are fully translationally invariant. The disorder strength as well as its density can be readily tuned using the initial state. Furthermore, we demonstrate the versatility of our platform by measuring Renyi entropies. Our method could also be extended to higher moments of the physical observables and disorder learning.
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- 2024
3. Schr\'odinger Bridge Flow for Unpaired Data Translation
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De Bortoli, Valentin, Korshunova, Iryna, Mnih, Andriy, and Doucet, Arnaud
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Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
Mass transport problems arise in many areas of machine learning whereby one wants to compute a map transporting one distribution to another. Generative modeling techniques like Generative Adversarial Networks (GANs) and Denoising Diffusion Models (DDMs) have been successfully adapted to solve such transport problems, resulting in CycleGAN and Bridge Matching respectively. However, these methods do not approximate Optimal Transport (OT) maps, which are known to have desirable properties. Existing techniques approximating OT maps for high-dimensional data-rich problems, such as DDM-based Rectified Flow and Schr\"odinger Bridge procedures, require fully training a DDM-type model at each iteration, or use mini-batch techniques which can introduce significant errors. We propose a novel algorithm to compute the Schr\"odinger Bridge, a dynamic entropy-regularised version of OT, that eliminates the need to train multiple DDM-like models. This algorithm corresponds to a discretisation of a flow of path measures, which we call the Schr\"odinger Bridge Flow, whose only stationary point is the Schr\"odinger Bridge. We demonstrate the performance of our algorithm on a variety of unpaired data translation tasks.
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- 2024
4. FLAMO: An Open-Source Library for Frequency-Domain Differentiable Audio Processing
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Santo, Gloria Dal, De Bortoli, Gian Marco, Prawda, Karolina, Schlecht, Sebastian J., and Välimäki, Vesa
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Electrical Engineering and Systems Science - Audio and Speech Processing - Abstract
We present FLAMO, a Frequency-sampling Library for Audio-Module Optimization designed to implement and optimize differentiable linear time-invariant audio systems. The library is open-source and built on the frequency-sampling filter design method, allowing for the creation of differentiable modules that can be used stand-alone or within the computation graph of neural networks, simplifying the development of differentiable audio systems. It includes predefined filtering modules and auxiliary classes for constructing, training, and logging the optimized systems, all accessible through an intuitive interface. Practical application of these modules is demonstrated through two case studies: the optimization of an artificial reverberator and an active acoustics system for improved response smoothness.
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- 2024
5. Quantum error correction below the surface code threshold
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Acharya, Rajeev, Aghababaie-Beni, Laleh, Aleiner, Igor, Andersen, Trond I., Ansmann, Markus, Arute, Frank, Arya, Kunal, Asfaw, Abraham, Astrakhantsev, Nikita, Atalaya, Juan, Babbush, Ryan, Bacon, Dave, Ballard, Brian, Bardin, Joseph C., Bausch, Johannes, Bengtsson, Andreas, Bilmes, Alexander, Blackwell, Sam, Boixo, Sergio, Bortoli, Gina, Bourassa, Alexandre, Bovaird, Jenna, Brill, Leon, Broughton, Michael, Browne, David A., Buchea, Brett, Buckley, Bob B., Buell, David A., Burger, Tim, Burkett, Brian, Bushnell, Nicholas, Cabrera, Anthony, Campero, Juan, Chang, Hung-Shen, Chen, Yu, Chen, Zijun, Chiaro, Ben, Chik, Desmond, Chou, Charina, Claes, Jahan, Cleland, Agnetta Y., Cogan, Josh, Collins, Roberto, Conner, Paul, Courtney, William, Crook, Alexander L., Curtin, Ben, Das, Sayan, Davies, Alex, De Lorenzo, Laura, Debroy, Dripto M., Demura, Sean, Devoret, Michel, Di Paolo, Agustin, Donohoe, Paul, Drozdov, Ilya, Dunsworth, Andrew, Earle, Clint, Edlich, Thomas, Eickbusch, Alec, Elbag, Aviv Moshe, Elzouka, Mahmoud, Erickson, Catherine, Faoro, Lara, Farhi, Edward, Ferreira, Vinicius S., Burgos, Leslie Flores, Forati, Ebrahim, Fowler, Austin G., Foxen, Brooks, Ganjam, Suhas, Garcia, Gonzalo, Gasca, Robert, Genois, Élie, Giang, William, Gidney, Craig, Gilboa, Dar, Gosula, Raja, Dau, Alejandro Grajales, Graumann, Dietrich, Greene, Alex, Gross, Jonathan A., Habegger, Steve, Hall, John, Hamilton, Michael C., Hansen, Monica, Harrigan, Matthew P., Harrington, Sean D., Heras, Francisco J. H., Heslin, Stephen, Heu, Paula, Higgott, Oscar, Hill, Gordon, Hilton, Jeremy, Holland, George, Hong, Sabrina, Huang, Hsin-Yuan, Huff, Ashley, Huggins, William J., Ioffe, Lev B., Isakov, Sergei V., Iveland, Justin, Jeffrey, Evan, Jiang, Zhang, Jones, Cody, Jordan, Stephen, Joshi, Chaitali, Juhas, Pavol, Kafri, Dvir, Kang, Hui, Karamlou, Amir H., Kechedzhi, Kostyantyn, Kelly, Julian, Khaire, Trupti, Khattar, Tanuj, Khezri, Mostafa, Kim, Seon, Klimov, Paul V., Klots, Andrey R., Kobrin, Bryce, Kohli, Pushmeet, Korotkov, Alexander N., Kostritsa, Fedor, Kothari, Robin, Kozlovskii, Borislav, Kreikebaum, John Mark, Kurilovich, Vladislav D., Lacroix, Nathan, Landhuis, David, Lange-Dei, Tiano, Langley, Brandon W., Laptev, Pavel, Lau, Kim-Ming, Guevel, Loïck Le, Ledford, Justin, Lee, Kenny, Lensky, Yuri D., Leon, Shannon, Lester, Brian J., Li, Wing Yan, Li, Yin, Lill, Alexander T., Liu, Wayne, Livingston, William P., Locharla, Aditya, Lucero, Erik, Lundahl, Daniel, Lunt, Aaron, Madhuk, Sid, Malone, Fionn D., Maloney, Ashley, Mandrá, Salvatore, Martin, Leigh S., Martin, Steven, Martin, Orion, Maxfield, Cameron, McClean, Jarrod R., McEwen, Matt, Meeks, Seneca, Megrant, Anthony, Mi, Xiao, Miao, Kevin C., Mieszala, Amanda, Molavi, Reza, Molina, Sebastian, Montazeri, Shirin, Morvan, Alexis, Movassagh, Ramis, Mruczkiewicz, Wojciech, Naaman, Ofer, Neeley, Matthew, Neill, Charles, Nersisyan, Ani, Neven, Hartmut, Newman, Michael, Ng, Jiun How, Nguyen, Anthony, Nguyen, Murray, Ni, Chia-Hung, O'Brien, Thomas E., Oliver, William D., Opremcak, Alex, Ottosson, Kristoffer, Petukhov, Andre, Pizzuto, Alex, Platt, John, Potter, Rebecca, Pritchard, Orion, Pryadko, Leonid P., Quintana, Chris, Ramachandran, Ganesh, Reagor, Matthew J., Rhodes, David M., Roberts, Gabrielle, Rosenberg, Eliott, Rosenfeld, Emma, Roushan, Pedram, Rubin, Nicholas C., Saei, Negar, Sank, Daniel, Sankaragomathi, Kannan, Satzinger, Kevin J., Schurkus, Henry F., Schuster, Christopher, Senior, Andrew W., Shearn, Michael J., Shorter, Aaron, Shutty, Noah, Shvarts, Vladimir, Singh, Shraddha, Sivak, Volodymyr, Skruzny, Jindra, Small, Spencer, Smelyanskiy, Vadim, Smith, W. Clarke, Somma, Rolando D., Springer, Sofia, Sterling, George, Strain, Doug, Suchard, Jordan, Szasz, Aaron, Sztein, Alex, Thor, Douglas, Torres, Alfredo, Torunbalci, M. Mert, Vaishnav, Abeer, Vargas, Justin, Vdovichev, Sergey, Vidal, Guifre, Villalonga, Benjamin, Heidweiller, Catherine Vollgraff, Waltman, Steven, Wang, Shannon X., Ware, Brayden, Weber, Kate, White, Theodore, Wong, Kristi, Woo, Bryan W. K., Xing, Cheng, Yao, Z. Jamie, Yeh, Ping, Ying, Bicheng, Yoo, Juhwan, Yosri, Noureldin, Young, Grayson, Zalcman, Adam, Zhang, Yaxing, Zhu, Ningfeng, and Zobrist, Nicholas
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Quantum Physics - Abstract
Quantum error correction provides a path to reach practical quantum computing by combining multiple physical qubits into a logical qubit, where the logical error rate is suppressed exponentially as more qubits are added. However, this exponential suppression only occurs if the physical error rate is below a critical threshold. In this work, we present two surface code memories operating below this threshold: a distance-7 code and a distance-5 code integrated with a real-time decoder. The logical error rate of our larger quantum memory is suppressed by a factor of $\Lambda$ = 2.14 $\pm$ 0.02 when increasing the code distance by two, culminating in a 101-qubit distance-7 code with 0.143% $\pm$ 0.003% error per cycle of error correction. This logical memory is also beyond break-even, exceeding its best physical qubit's lifetime by a factor of 2.4 $\pm$ 0.3. We maintain below-threshold performance when decoding in real time, achieving an average decoder latency of 63 $\mu$s at distance-5 up to a million cycles, with a cycle time of 1.1 $\mu$s. To probe the limits of our error-correction performance, we run repetition codes up to distance-29 and find that logical performance is limited by rare correlated error events occurring approximately once every hour, or 3 $\times$ 10$^9$ cycles. Our results present device performance that, if scaled, could realize the operational requirements of large scale fault-tolerant quantum algorithms., Comment: 10 pages, 4 figures, Supplementary Information
- Published
- 2024
6. The Precise Complexity of Reasoning in $\mathcal{ALC}$ with $\omega$-Admissible Concrete Domains (Extended Version)
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Borgwardt, Stefan, De Bortoli, Filippo, and Koopmann, Patrick
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Computer Science - Logic in Computer Science - Abstract
Concrete domains have been introduced in the context of Description Logics to allow references to qualitative and quantitative values. In particular, the class of $\omega$-admissible concrete domains, which includes Allen's interval algebra, the region connection calculus (RCC8), and the rational numbers with ordering and equality, has been shown to yield extensions of $\mathcal{ALC}$ for which concept satisfiability w.r.t. a general TBox is decidable. In this paper, we present an algorithm based on type elimination and use it to show that deciding the consistency of an $\mathcal{ALC}(\mathfrak{D})$ ontology is ExpTime-complete if the concrete domain $\mathfrak{D}$ is $\omega$-admissible and its constraint satisfaction problem is decidable in exponential time. While this allows us to reason with concept and role assertions, we also investigate feature assertions $f(a,c)$ that can specify a constant $c$ as the value of a feature $f$ for an individual $a$. We show that, under conditions satisfied by all known $\omega$-admissible domains, we can add feature assertions without affecting the complexity., Comment: This is the extended version of a paper presented at DL 2024: 37th International Workshop on Description Logics
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- 2024
7. Thermalization and Criticality on an Analog-Digital Quantum Simulator
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Andersen, Trond I., Astrakhantsev, Nikita, Karamlou, Amir H., Berndtsson, Julia, Motruk, Johannes, Szasz, Aaron, Gross, Jonathan A., Schuckert, Alexander, Westerhout, Tom, Zhang, Yaxing, Forati, Ebrahim, Rossi, Dario, Kobrin, Bryce, Di Paolo, Agustin, Klots, Andrey R., Drozdov, Ilya, Kurilovich, Vladislav D., Petukhov, Andre, Ioffe, Lev B., Elben, Andreas, Rath, Aniket, Vitale, Vittorio, Vermersch, Benoit, Acharya, Rajeev, Beni, Laleh Aghababaie, Anderson, Kyle, Ansmann, Markus, Arute, Frank, Arya, Kunal, Asfaw, Abraham, Atalaya, Juan, Ballard, Brian, Bardin, Joseph C., Bengtsson, Andreas, Bilmes, Alexander, Bortoli, Gina, Bourassa, Alexandre, Bovaird, Jenna, Brill, Leon, Broughton, Michael, Browne, David A., Buchea, Brett, Buckley, Bob B., Buell, David A., Burger, Tim, Burkett, Brian, Bushnell, Nicholas, Cabrera, Anthony, Campero, Juan, Chang, Hung-Shen, Chen, Zijun, Chiaro, Ben, Claes, Jahan, Cleland, Agnetta Y., Cogan, Josh, Collins, Roberto, Conner, Paul, Courtney, William, Crook, Alexander L., Das, Sayan, Debroy, Dripto M., De Lorenzo, Laura, Barba, Alexander Del Toro, Demura, Sean, Donohoe, Paul, Dunsworth, Andrew, Earle, Clint, Eickbusch, Alec, Elbag, Aviv Moshe, Elzouka, Mahmoud, Erickson, Catherine, Faoro, Lara, Fatemi, Reza, Ferreira, Vinicius S., Burgos, Leslie Flores, Fowler, Austin G., Foxen, Brooks, Ganjam, Suhas, Gasca, Robert, Giang, William, Gidney, Craig, Gilboa, Dar, Giustina, Marissa, Gosula, Raja, Dau, Alejandro Grajales, Graumann, Dietrich, Greene, Alex, Habegger, Steve, Hamilton, Michael C., Hansen, Monica, Harrigan, Matthew P., Harrington, Sean D., Heslin, Stephen, Heu, Paula, Hill, Gordon, Hoffmann, Markus R., Huang, Hsin-Yuan, Huang, Trent, Huff, Ashley, Huggins, William J., Isakov, Sergei V., Jeffrey, Evan, Jiang, Zhang, Jones, Cody, Jordan, Stephen, Joshi, Chaitali, Juhas, Pavol, Kafri, Dvir, Kang, Hui, Kechedzhi, Kostyantyn, Khaire, Trupti, Khattar, Tanuj, Khezri, Mostafa, Kieferová, Mária, Kim, Seon, Kitaev, Alexei, Klimov, Paul V., Korotkov, Alexander N., Kostritsa, Fedor, Kreikebaum, John Mark, Landhuis, David, Langley, Brandon W., Laptev, Pavel, Lau, Kim-Ming, Guevel, Loïck Le, Ledford, Justin, Lee, Joonho, Lee, Kenny, Lensky, Yuri D., Lester, Brian J., Li, Wing Yan, Lill, Alexander T., Liu, Wayne, Livingston, William P., Locharla, Aditya, Lundahl, Daniel, Lunt, Aaron, Madhuk, Sid, Maloney, Ashley, Mandrà, Salvatore, Martin, Leigh S., Martin, Orion, Martin, Steven, Maxfield, Cameron, McClean, Jarrod R., McEwen, Matt, Meeks, Seneca, Miao, Kevin C., Mieszala, Amanda, Molina, Sebastian, Montazeri, Shirin, Morvan, Alexis, Movassagh, Ramis, Neill, Charles, Nersisyan, Ani, Newman, Michael, Nguyen, Anthony, Nguyen, Murray, Ni, Chia-Hung, Niu, Murphy Yuezhen, Oliver, William D., Ottosson, Kristoffer, Pizzuto, Alex, Potter, Rebecca, Pritchard, Orion, Pryadko, Leonid P., Quintana, Chris, Reagor, Matthew J., Rhodes, David M., Roberts, Gabrielle, Rocque, Charles, Rosenberg, Eliott, Rubin, Nicholas C., Saei, Negar, Sankaragomathi, Kannan, Satzinger, Kevin J., Schurkus, Henry F., Schuster, Christopher, Shearn, Michael J., Shorter, Aaron, Shutty, Noah, Shvarts, Vladimir, Sivak, Volodymyr, Skruzny, Jindra, Small, Spencer, Smith, W. Clarke, Springer, Sofia, Sterling, George, Suchard, Jordan, Szalay, Marco, Sztein, Alex, Thor, Douglas, Torres, Alfredo, Torunbalci, M. Mert, Vaishnav, Abeer, Vdovichev, Sergey, Villalonga, Benjamin, Heidweiller, Catherine Vollgraff, Waltman, Steven, Wang, Shannon X., White, Theodore, Wong, Kristi, Woo, Bryan W., Xing, Cheng, Yao, Z. Jamie, Yeh, Ping, Ying, Bicheng, Yoo, Juhwan, Yosri, Noureldin, Young, Grayson, Zalcman, Adam, Zhu, Ningfeng, Zobrist, Nicholas, Neven, Hartmut, Babbush, Ryan, Boixo, Sergio, Hilton, Jeremy, Lucero, Erik, Megrant, Anthony, Kelly, Julian, Chen, Yu, Smelyanskiy, Vadim, Vidal, Guifre, Roushan, Pedram, Lauchli, Andreas M., Abanin, Dmitry A., and Mi, Xiao
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Quantum Physics ,Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Strongly Correlated Electrons - Abstract
Understanding how interacting particles approach thermal equilibrium is a major challenge of quantum simulators. Unlocking the full potential of such systems toward this goal requires flexible initial state preparation, precise time evolution, and extensive probes for final state characterization. We present a quantum simulator comprising 69 superconducting qubits which supports both universal quantum gates and high-fidelity analog evolution, with performance beyond the reach of classical simulation in cross-entropy benchmarking experiments. Emulating a two-dimensional (2D) XY quantum magnet, we leverage a wide range of measurement techniques to study quantum states after ramps from an antiferromagnetic initial state. We observe signatures of the classical Kosterlitz-Thouless phase transition, as well as strong deviations from Kibble-Zurek scaling predictions attributed to the interplay between quantum and classical coarsening of the correlated domains. This interpretation is corroborated by injecting variable energy density into the initial state, which enables studying the effects of the eigenstate thermalization hypothesis (ETH) in targeted parts of the eigenspectrum. Finally, we digitally prepare the system in pairwise-entangled dimer states and image the transport of energy and vorticity during thermalization. These results establish the efficacy of superconducting analog-digital quantum processors for preparing states across many-body spectra and unveiling their thermalization dynamics.
- Published
- 2024
8. Deep MMD Gradient Flow without adversarial training
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Galashov, Alexandre, de Bortoli, Valentin, and Gretton, Arthur
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
We propose a gradient flow procedure for generative modeling by transporting particles from an initial source distribution to a target distribution, where the gradient field on the particles is given by a noise-adaptive Wasserstein Gradient of the Maximum Mean Discrepancy (MMD). The noise-adaptive MMD is trained on data distributions corrupted by increasing levels of noise, obtained via a forward diffusion process, as commonly used in denoising diffusion probabilistic models. The result is a generalization of MMD Gradient Flow, which we call Diffusion-MMD-Gradient Flow or DMMD. The divergence training procedure is related to discriminator training in Generative Adversarial Networks (GAN), but does not require adversarial training. We obtain competitive empirical performance in unconditional image generation on CIFAR10, MNIST, CELEB-A (64 x64) and LSUN Church (64 x 64). Furthermore, we demonstrate the validity of the approach when MMD is replaced by a lower bound on the KL divergence.
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- 2024
9. Multi-level Product Category Prediction through Text Classification
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Maia, Wesley Ferreira, Carmignani, Angelo, Bortoli, Gabriel, Maretti, Lucas, Luz, David, Guzman, Daniel Camilo Fuentes, Henriques, Marcos Jardel, and Neto, Francisco Louzada
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Computer Science - Computation and Language - Abstract
This article investigates applying advanced machine learning models, specifically LSTM and BERT, for text classification to predict multiple categories in the retail sector. The study demonstrates how applying data augmentation techniques and the focal loss function can significantly enhance accuracy in classifying products into multiple categories using a robust Brazilian retail dataset. The LSTM model, enriched with Brazilian word embedding, and BERT, known for its effectiveness in understanding complex contexts, were adapted and optimized for this specific task. The results showed that the BERT model, with an F1 Macro Score of up to $99\%$ for segments, $96\%$ for categories and subcategories and $93\%$ for name products, outperformed LSTM in more detailed categories. However, LSTM also achieved high performance, especially after applying data augmentation and focal loss techniques. These results underscore the effectiveness of NLP techniques in retail and highlight the importance of the careful selection of modelling and preprocessing strategies. This work contributes significantly to the field of NLP in retail, providing valuable insights for future research and practical applications.
- Published
- 2024
10. Antioxidant Potential of Anthocyanidins: A 'Healthy' Computational Activity for High School and Undergraduate Students
- Author
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Marco Bortoli and Laura Orian
- Abstract
Molecules and Computer: Chemistry Calculations in Class (MC[superscript 4]) is a computational laboratory intended for final-year high school or undergraduate students. The topic is the antioxidant potential of anthocyanidins, which is chemically related to their radical scavenging action via the mechanism of hydrogen atom transfer (HAT). This laboratory combines (bio)chemical and nutraceutical concepts with organic chemical reactions involving radical species. It allows students to apply important physicochemical (thermodynamic) concepts, such as Gibbs free energy of reaction and solvation. Finally, the procedure can easily be tailored to the resources at hand as well as the knowledge of the students. In fact, when computing facilities are not available, the whole set of molecular structures and energy data are provided as well as a simple datasheet required for their analysis. Alternatively, the whole protocol and useful scripts are provided so that students can generate their own results by experiencing the approach to computational chemistry.
- Published
- 2023
11. Phase transitions in random circuit sampling
- Author
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Morvan, A., Villalonga, B., Mi, X., Mandrà, S., Bengtsson, A., Klimov, P. V., Chen, Z., Hong, S., Erickson, C., Drozdov, I. K., Chau, J., Laun, G., Movassagh, R., Asfaw, A., Brandão, L. T. A. N., Peralta, R., Abanin, D., Acharya, R., Allen, R., Andersen, T. I., Anderson, K., Ansmann, M., Arute, F., Arya, K., Atalaya, J., Bardin, J. C., Bilmes, A., Bortoli, G., Bourassa, A., Bovaird, J., Brill, L., Broughton, M., Buckley, B. B., Buell, D. A., Burger, T., Burkett, B., Bushnell, N., Campero, J., Chang, H.-S., Chiaro, B., Chik, D., Chou, C., Cogan, J., Collins, R., Conner, P., Courtney, W., Crook, A. L., Curtin, B., Debroy, D. M., Barba, A. Del Toro, Demura, S., Paolo, A. Di, Dunsworth, A., Faoro, L., Farhi, E., Fatemi, R., Ferreira, V. S., Burgos, L. Flores, Forati, E., Fowler, A. G., Foxen, B., Garcia, G., Genois, É., Giang, W., Gidney, C., Gilboa, D., Giustina, M., Gosula, R., Dau, A. Grajales, Gross, J. A., Habegger, S., Hamilton, M. C., Hansen, M., Harrigan, M. P., Harrington, S. D., Heu, P., Hoffmann, M. R., Huang, T., Huff, A., Huggins, W. J., Ioffe, L. B., Isakov, S. V., Iveland, J., Jeffrey, E., Jiang, Z., Jones, C., Juhas, P., Kafri, D., Khattar, T., Khezri, M., Kieferová, M., Kim, S., Kitaev, A., Klots, A. R., Korotkov, A. N., Kostritsa, F., Kreikebaum, J. M., Landhuis, D., Laptev, P., Lau, K.-M., Laws, L., Lee, J., Lee, K. W., Lensky, Y. D., Lester, B. J., Lill, A. T., Liu, W., Livingston, W. P., Locharla, A., Malone, F. D., Martin, O., Martin, S., McClean, J. R., McEwen, M., Miao, K. C., Mieszala, A., Montazeri, S., Mruczkiewicz, W., Naaman, O., Neeley, M., Neill, C., Nersisyan, A., Newman, M., Ng, J. H., Nguyen, A., Nguyen, M., Niu, M. Yuezhen, O’Brien, T. E., Omonije, S., Opremcak, A., Petukhov, A., Potter, R., Pryadko, L. P., Quintana, C., Rhodes, D. M., Rocque, C., Rosenberg, E., Rubin, N. C., Saei, N., Sank, D., Sankaragomathi, K., Satzinger, K. J., Schurkus, H. F., Schuster, C., Shearn, M. J., Shorter, A., Shutty, N., Shvarts, V., Sivak, V., Skruzny, J., Smith, W. C., Somma, R. D., Sterling, G., Strain, D., Szalay, M., Thor, D., Torres, A., Vidal, G., Heidweiller, C. Vollgraff, White, T., Woo, B. W. K., Xing, C., Yao, Z. J., Yeh, P., Yoo, J., Young, G., Zalcman, A., Zhang, Y., Zhu, N., Zobrist, N., Rieffel, E. G., Biswas, R., Babbush, R., Bacon, D., Hilton, J., Lucero, E., Neven, H., Megrant, A., Kelly, J., Roushan, P., Aleiner, I., Smelyanskiy, V., Kechedzhi, K., Chen, Y., and Boixo, S.
- Published
- 2024
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12. Dynamical Regimes of Diffusion Models
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Biroli, Giulio, Bonnaire, Tony, de Bortoli, Valentin, and Mézard, Marc
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Computer Science - Machine Learning ,Condensed Matter - Statistical Mechanics - Abstract
Using statistical physics methods, we study generative diffusion models in the regime where the dimension of space and the number of data are large, and the score function has been trained optimally. Our analysis reveals three distinct dynamical regimes during the backward generative diffusion process. The generative dynamics, starting from pure noise, encounters first a 'speciation' transition where the gross structure of data is unraveled, through a mechanism similar to symmetry breaking in phase transitions. It is followed at later time by a 'collapse' transition where the trajectories of the dynamics become attracted to one of the memorized data points, through a mechanism which is similar to the condensation in a glass phase. For any dataset, the speciation time can be found from a spectral analysis of the correlation matrix, and the collapse time can be found from the estimation of an 'excess entropy' in the data. The dependence of the collapse time on the dimension and number of data provides a thorough characterization of the curse of dimensionality for diffusion models. Analytical solutions for simple models like high-dimensional Gaussian mixtures substantiate these findings and provide a theoretical framework, while extensions to more complex scenarios and numerical validations with real datasets confirm the theoretical predictions., Comment: 22 pages, 11 figures
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- 2024
13. Diffusion Models as Constrained Samplers for Optimization with Unknown Constraints
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Kong, Lingkai, Du, Yuanqi, Mu, Wenhao, Neklyudov, Kirill, De Bortoli, Valentin, Wu, Dongxia, Wang, Haorui, Ferber, Aaron, Ma, Yi-An, Gomes, Carla P., and Zhang, Chao
- Subjects
Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
Addressing real-world optimization problems becomes particularly challenging when analytic objective functions or constraints are unavailable. While numerous studies have addressed the issue of unknown objectives, limited research has focused on scenarios where feasibility constraints are not given explicitly. Overlooking these constraints can lead to spurious solutions that are unrealistic in practice. To deal with such unknown constraints, we propose to perform optimization within the data manifold using diffusion models. To constrain the optimization process to the data manifold, we reformulate the original optimization problem as a sampling problem from the product of the Boltzmann distribution defined by the objective function and the data distribution learned by the diffusion model. Depending on the differentiability of the objective function, we propose two different sampling methods. For differentiable objectives, we propose a two-stage framework that begins with a guided diffusion process for warm-up, followed by a Langevin dynamics stage for further correction. For non-differentiable objectives, we propose an iterative importance sampling strategy using the diffusion model as the proposal distribution. Comprehensive experiments on a synthetic dataset, six real-world black-box optimization datasets, and a multi-objective molecule optimization dataset show that our method achieves better or comparable performance with previous state-of-the-art baselines.
- Published
- 2024
14. Target Score Matching
- Author
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De Bortoli, Valentin, Hutchinson, Michael, Wirnsberger, Peter, and Doucet, Arnaud
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Computer Science - Machine Learning ,Statistics - Computation ,Statistics - Machine Learning - Abstract
Denoising Score Matching estimates the score of a noised version of a target distribution by minimizing a regression loss and is widely used to train the popular class of Denoising Diffusion Models. A well known limitation of Denoising Score Matching, however, is that it yields poor estimates of the score at low noise levels. This issue is particularly unfavourable for problems in the physical sciences and for Monte Carlo sampling tasks for which the score of the clean original target is known. Intuitively, estimating the score of a slightly noised version of the target should be a simple task in such cases. In this paper, we address this shortcoming and show that it is indeed possible to leverage knowledge of the target score. We present a Target Score Identity and corresponding Target Score Matching regression loss which allows us to obtain score estimates admitting favourable properties at low noise levels.
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- 2024
15. Particle Denoising Diffusion Sampler
- Author
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Phillips, Angus, Dau, Hai-Dang, Hutchinson, Michael John, De Bortoli, Valentin, Deligiannidis, George, and Doucet, Arnaud
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Statistics - Machine Learning ,Computer Science - Machine Learning ,Statistics - Computation - Abstract
Denoising diffusion models have become ubiquitous for generative modeling. The core idea is to transport the data distribution to a Gaussian by using a diffusion. Approximate samples from the data distribution are then obtained by estimating the time-reversal of this diffusion using score matching ideas. We follow here a similar strategy to sample from unnormalized probability densities and compute their normalizing constants. However, the time-reversed diffusion is here simulated by using an original iterative particle scheme relying on a novel score matching loss. Contrary to standard denoising diffusion models, the resulting Particle Denoising Diffusion Sampler (PDDS) provides asymptotically consistent estimates under mild assumptions. We demonstrate PDDS on multimodal and high dimensional sampling tasks., Comment: To be published in ICML 2024. 37 pages, 20 figures, 3 tables, 5 algorithms
- Published
- 2024
16. Implicit Diffusion: Efficient Optimization through Stochastic Sampling
- Author
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Marion, Pierre, Korba, Anna, Bartlett, Peter, Blondel, Mathieu, De Bortoli, Valentin, Doucet, Arnaud, Llinares-López, Felipe, Paquette, Courtney, and Berthet, Quentin
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Computer Science - Machine Learning - Abstract
We present a new algorithm to optimize distributions defined implicitly by parameterized stochastic diffusions. Doing so allows us to modify the outcome distribution of sampling processes by optimizing over their parameters. We introduce a general framework for first-order optimization of these processes, that performs jointly, in a single loop, optimization and sampling steps. This approach is inspired by recent advances in bilevel optimization and automatic implicit differentiation, leveraging the point of view of sampling as optimization over the space of probability distributions. We provide theoretical guarantees on the performance of our method, as well as experimental results demonstrating its effectiveness. We apply it to training energy-based models and finetuning denoising diffusions., Comment: 38 pages, 16 figures. Updated with additional experiments
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- 2024
17. The VISCACHA survey -- IX. The SMC Southern Bridge in 8D
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Parisi, M. C., Oliveira, R. A. P., Angelo, M., Dias, B., Maia, F., Saroon, S., Feinstein, C., Santos Jr., J. F. C., Bica, E., Ferreira, B. Pereira Lima, Fernández-Trincado, J. G., Westera, P., Minniti, D., Garro, E. R., Santrich, O. J. Katime, De Bortoli, B., Souza, S., Kerber, L., and Pérez-Villegas, A.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics - Abstract
The structure of the Small Magellanic Cloud (SMC) outside of its main body is characterised by tidal branches resulting from its interactions mainly with the Large Magellanic Cloud (LMC). Characterising the stellar populations in these tidal components helps to understand the dynamical history of this galaxy and of the Magellanic system in general. We provide full phase-space vector information for Southern Bridge clusters. We performed a photometric and spectroscopic analysis of twelve SMC clusters, doubling the number of SMC clusters with full phase-space vector information known to date. We reclassify the sample considering 3D distances and 3D velocities. We found that some of the clusters classified as Southern Bridge objects according to the projected 2D classification actually belong to the Main Body and Counter-Bridge in the background. The comparison of the kinematics of the genuine foreground Bridge clusters with those previously analysed in the same way reveals that Southern Bridge clusters are moving towards the LMC and share the kinematics of the Northern Bridge. Adding to our sample clusters from the literature with CaT metallicity determinations we compare the age-metallicity relation of the Southern Bridge with the one of the Northern Bridge. We reinforce the idea that both regions do not seem to have experienced the same chemical enrichment history and that there is a clear absence of clusters in the Northern Bridge older than 3Gyr and more metal-poor than -1.1, which would not seem to be due to a selection effect., Comment: 18 pages, 9 figures, accepted for publication in MNRAS
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- 2023
18. GPT-based chatbot tools are still unreliable in the management of prosthetic joint infections
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Bortoli, M., Fiore, M., Tedeschi, S., Oliveira, V., Sousa, R., Bruschi, A., Campanacci, D. A., Viale, P., De Paolis, M., and Sambri, A.
- Published
- 2024
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19. Drawing on the Locus of Control Framework to Explore the Role of School Leaders in Teacher Well-Being
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Venema-Steen, Inga, Southall, Anne, and Bortoli, Anna
- Abstract
This scoping review explores the role of school leadership in the improvement of teacher well-being by utilizing the Locus of Control (LOC) Framework identified by psychologist Julian Rotter in 1954. The internal and external environments impacting teacher well-being were explored, and the specific responsibilities of school leadership were identified. The literature reports that while teachers are responsible for many aspects of their well-being, school leaders can improve a teacher's mental health and create a positive school culture by taking responsibility for factors external to the teacher's LOC. This paper outlines school leadership responsibilities in actively implementing strategies to improve staff well-being in the school environment.
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- 2023
20. Conversational agents and momentary user experience: an assessment using an electroencephalography device
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Brock, Laís Andressa, De Bortoli, Lis Ângela, Bellei, Ericles Andrei, and De Marchi, Ana Carolina Bertoletti
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- 2024
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21. The Impact of Voluntary Recall on the Trust of Loyal and First-Time Consumers in a High Awareness Brand After a Functional Transgression
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Freundt, Valeria L M A and Foschiera, Luiza Venzke Bortoli
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- 2024
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22. Attractiveness of Pitfall Traps with Baits for Harvestmen in a Sugarcane Agroecosystem
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Peixoto, Pedro Gomes, Nascimento, Vinícius Ferraz, de Lacerda, Letícia Barbosa, Siansi, Frederico Luiz, de Matos, Gilson Fabiano, de Souza, Joice Mendonça, Ramalho, Dagmara Gomes, and De Bortoli, Sergio Antonio
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- 2024
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23. A systematic review of enhanced polyurethane foam composites modified with graphene for automotive industry
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Kerche, Eduardo Fischer, Lazzari, Lídia Kunz, de Bortoli, Bruna Farias, de Oliveira Polkowski, Rodrigo Denizarte, and de Albuquerque, Ricardo Ferreira Cavalcanti
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- 2024
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24. Laparoscopic Cytoreductive Surgery (CRS) and Hyperthermic Intraperitoneal Chemotherapy (HIPEC) for Peritoneal Metastasis: Improved Short-term Outcomes Revealed Through Propensity Score Matching Analysis
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Bortoli, Nicolò, Tonello, Marco, Pizzolato, Elisa, Cenzi, Carola, Pilati, Pierluigi, and Sommariva, Antonio
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- 2024
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25. Augmented Bridge Matching
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De Bortoli, Valentin, Liu, Guan-Horng, Chen, Tianrong, Theodorou, Evangelos A., and Nie, Weilie
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Computer Science - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition ,Statistics - Machine Learning - Abstract
Flow and bridge matching are a novel class of processes which encompass diffusion models. One of the main aspect of their increased flexibility is that these models can interpolate between arbitrary data distributions i.e. they generalize beyond generative modeling and can be applied to learning stochastic (and deterministic) processes of arbitrary transfer tasks between two given distributions. In this paper, we highlight that while flow and bridge matching processes preserve the information of the marginal distributions, they do \emph{not} necessarily preserve the coupling information unless additional, stronger optimality conditions are met. This can be problematic if one aims at preserving the original empirical pairing. We show that a simple modification of the matching process recovers this coupling by augmenting the velocity field (or drift) with the information of the initial sample point. Doing so, we lose the Markovian property of the process but preserve the coupling information between distributions. We illustrate the efficiency of our augmentation in learning mixture of image translation tasks.
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- 2023
26. Variable Selection in Maximum Mean Discrepancy for Interpretable Distribution Comparison
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Mitsuzawa, Kensuke, Kanagawa, Motonobu, Bortoli, Stefano, Grossi, Margherita, and Papotti, Paolo
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Statistics - Machine Learning ,Computer Science - Machine Learning - Abstract
Two-sample testing decides whether two datasets are generated from the same distribution. This paper studies variable selection for two-sample testing, the task being to identify the variables (or dimensions) responsible for the discrepancies between the two distributions. This task is relevant to many problems of pattern analysis and machine learning, such as dataset shift adaptation, causal inference and model validation. Our approach is based on a two-sample test based on the Maximum Mean Discrepancy (MMD). We optimise the Automatic Relevance Detection (ARD) weights defined for individual variables to maximise the power of the MMD-based test. For this optimisation, we introduce sparse regularisation and propose two methods for dealing with the issue of selecting an appropriate regularisation parameter. One method determines the regularisation parameter in a data-driven way, and the other aggregates the results of different regularisation parameters. We confirm the validity of the proposed methods by systematic comparisons with baseline methods, and demonstrate their usefulness in exploratory analysis of high-dimensional traffic simulation data. Preliminary theoretical analyses are also provided, including a rigorous definition of variable selection for two-sample testing.
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- 2023
27. Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models
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Corso, Gabriele, Xu, Yilun, de Bortoli, Valentin, Barzilay, Regina, and Jaakkola, Tommi
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
In light of the widespread success of generative models, a significant amount of research has gone into speeding up their sampling time. However, generative models are often sampled multiple times to obtain a diverse set incurring a cost that is orthogonal to sampling time. We tackle the question of how to improve diversity and sample efficiency by moving beyond the common assumption of independent samples. We propose particle guidance, an extension of diffusion-based generative sampling where a joint-particle time-evolving potential enforces diversity. We analyze theoretically the joint distribution that particle guidance generates, how to learn a potential that achieves optimal diversity, and the connections with methods in other disciplines. Empirically, we test the framework both in the setting of conditional image generation, where we are able to increase diversity without affecting quality, and molecular conformer generation, where we reduce the state-of-the-art median error by 13% on average.
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- 2023
28. Plug-and-Play Posterior Sampling under Mismatched Measurement and Prior Models
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Renaud, Marien, Liu, Jiaming, de Bortoli, Valentin, Almansa, Andrés, and Kamilov, Ulugbek S.
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Statistics - Machine Learning ,Computer Science - Machine Learning - Abstract
Posterior sampling has been shown to be a powerful Bayesian approach for solving imaging inverse problems. The recent plug-and-play unadjusted Langevin algorithm (PnP-ULA) has emerged as a promising method for Monte Carlo sampling and minimum mean squared error (MMSE) estimation by combining physical measurement models with deep-learning priors specified using image denoisers. However, the intricate relationship between the sampling distribution of PnP-ULA and the mismatched data-fidelity and denoiser has not been theoretically analyzed. We address this gap by proposing a posterior-L2 pseudometric and using it to quantify an explicit error bound for PnP-ULA under mismatched posterior distribution. We numerically validate our theory on several inverse problems such as sampling from Gaussian mixture models and image deblurring. Our results suggest that the sensitivity of the sampling distribution of PnP-ULA to a mismatch in the measurement model and the denoiser can be precisely characterized.
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- 2023
29. Dynamical regimes of diffusion models
- Author
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Giulio Biroli, Tony Bonnaire, Valentin de Bortoli, and Marc Mézard
- Subjects
Science - Abstract
Abstract We study generative diffusion models in the regime where both the data dimension and the sample size are large, and the score function is trained optimally. Using statistical physics methods, we identify three distinct dynamical regimes during the generative diffusion process. The generative dynamics, starting from pure noise, first encounters a speciation transition, where the broad structure of the data emerges, akin to symmetry breaking in phase transitions. This is followed by a collapse phase, where the dynamics is attracted to a specific training point through a mechanism similar to condensation in a glass phase. The speciation time can be obtained from a spectral analysis of the data’s correlation matrix, while the collapse time relates to an excess entropy measure, and reveals the existence of a curse of dimensionality for diffusion models. These theoretical findings are supported by analytical solutions for Gaussian mixtures and confirmed by numerical experiments on real datasets.
- Published
- 2024
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30. New insights in the mechanism of the SARS-CoV-2 Mpro inhibition by benzisoselenazolones and diselenides
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Luca Sancineto, Francesca Mangiavacchi, Agnieszka Dabrowska, Agata J. Pacuła-Miszewska, Magdalena Obieziurska-Fabisiak, Cecilia Scimmi, Veronica Ceccucci, Juan Kong, Yao Zhao, Gianluca Ciancaleoni, Vanessa Nascimento, Bruno Rizzuti, Marco Bortoli, Laura Orian, Anna Kula-Pacurar, Haitao Yang, Jacek Ścianowski, Ying Lei, Krzysztof Pyrc, and Claudio Santi
- Subjects
Benzisoselenazolones ,Diselenides ,SARS-CoV-2 main protease inhibitors ,Glutathione ,Ebselen ,Medicine ,Science - Abstract
Abstract Although global vaccination campaigns alleviated the SARS-CoV-2 pandemic in terms of morbidity and mortality, the ability of the virus to originate mutants may reduce the efficacy of vaccines, posing a serious risk of a renewed pandemic. There is therefore a need to develop small molecules capable of targeting conserved viral targets, such as the main protease (Mpro). Here, a series of benzisoselenazolones and diselenides were tested for their ability to inhibit Mpro; then the most potent compounds were measured for antiviral activity in vitro, and the mechanism of action was investigated. Density functional theory calculations, molecular docking and molecular dynamics simulations were also used to elucidate the protein/drug interaction. Finally, a bio-organic model was established to study the reaction between selenorganic compounds and biologically relevant thiols to unveil possible metabolic pathways of such compounds. The overall results contribute to the identification of a series of novel Se-containing molecules active against SARS-CoV-2 and to the clarification of some important aspects in the mechanisms of action of such inhibitors targeting SARS-CoV-2 Mpro.
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- 2024
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31. Metabolic disrupting chemicals in the intestine: the need for biologically relevant models
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Chedi Erradhouani, Sylvie Bortoli, Selim Aït‐Aïssa, Xavier Coumoul, and François Brion
- Subjects
CYP3A4 ,endocrine disruptors ,fish models ,gut metabolism ,in vivo models ,zebrafish ,Biology (General) ,QH301-705.5 - Abstract
Although the concept of endocrine disruptors first appeared almost 30 years ago, the relatively recent involvement of these substances in the etiology of metabolic pathologies (obesity, diabetes, hepatic steatosis, etc.) has given rise to the concept of Metabolic Disrupting Chemicals (MDCs). Organs such as the liver and adipose tissue have been well studied in the context of metabolic disruption by these substances. The intestine, however, has been relatively unexplored despite its close link with these organs. In vivo models are useful for the study of the effects of MDCs in the intestine and, in addition, allow investigations into interactions with the rest of the organism. In the latter respect, the zebrafish is an animal model which is used increasingly for the characterization of endocrine disruptors and its use as a model for assessing effects on the intestine will, no doubt, expand. This review aims to highlight the importance of the intestine in metabolism and present the zebrafish as a relevant alternative model for investigating the effect of pollutants in the intestine by focusing, in particular, on cytochrome P450 3A (CYP3A), one of the major molecular players in endogenous and MDCs metabolism in the gut.
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- 2024
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32. Preventing illegal seafood trade using machine-learning assisted microbiome analysis
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Luca Peruzza, Francesco Cicala, Massimo Milan, Giulia Dalla Rovere, Tomaso Patarnello, Luciano Boffo, Morgan Smits, Silvia Iori, Angelo De Bortoli, Federica Schiavon, Aurelio Zentilin, Piero Fariselli, Barbara Cardazzo, and Luca Bargelloni
- Subjects
Machine learning ,Food traceability ,Microbiota 16S ,Manila clam ,North Adriatic sea ,Illegal unreported unregulated (IUU) fishing ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Seafood is increasingly traded worldwide, but its supply chain is particularly prone to frauds. To increase consumer confidence, prevent illegal trade, and provide independent validation for eco-labelling, accurate tools for seafood traceability are needed. Here we show that the use of microbiome profiling (MP) coupled with machine learning (ML) allows precise tracing the origin of Manila clams harvested in areas separated by small geographic distances. The study was designed to represent a real-world scenario. Clams were collected in different seasons across the most important production area in Europe (lagoons along the northern Adriatic coast) to cover the known seasonal variation in microbiome composition for the species. DNA extracted from samples underwent the same depuration process as commercial products (i.e. at least 12 h in open flow systems). Results Machine learning-based analysis of microbiome profiles was carried out using two completely independent sets of data (collected at the same locations but in different years), one for training the algorithm, and the other for testing its accuracy and assessing the temporal stability signal. Briefly, gills (GI) and digestive gland (DG) of clams were collected in summer and winter over two different years (i.e. from 2018 to 2020) in one banned area and four farming sites. 16S DNA metabarcoding was performed on clam tissues and the obtained amplicon sequence variants (ASVs) table was used as input for ML MP. The best-predicting performances were obtained using the combined information of GI and DG (consensus analysis), showing a Cohen K-score > 0.95 when the target was the classification of samples collected from the banned area and those harvested at farming sites. Classification of the four different farming areas showed slightly lower accuracy with a 0.76 score. Conclusions We show here that MP coupled with ML is an effective tool to trace the origin of shellfish products. The tool is extremely robust against seasonal and inter-annual variability, as well as product depuration, and is ready for implementation in routine assessment to prevent the trade of illegally harvested or mislabeled shellfish.
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- 2024
- Full Text
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33. Evidências para a Promoção da Saúde no Brasil: relato de um serviço de resposta rápida
- Author
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Jorge Otávio Maia Barreto, Tereza Setsuko Toma, Roberta Crevelário de Melo, Letícia Aparecida Lopes Bezerra da Silva, Bruna Carolina de Araújo, Emanuelly Camargo Tafarello, Jessica De Lucca Da Silva, Maritsa Carla de Bortoli, Graziela Tavares Ribeiro, and Rosana Evangelista Poderoso
- Subjects
política informada por evidências ,promoção da saúde ,tradução do conhecimento ,sistemas públicos de saúde ,gestor de saúde ,brasil ,Medicine ,Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
Objetivo. Apresentar a experiência de um serviço de resposta rápida para apoiar a tomada de decisão em saúde. Método São descritos os processos e resultados de um serviço de produção de revisões rápidas e mapas de evidências para apoiar a tomada de decisão no âmbito da Política Nacional de Promoção da Saúde, bem como a percepção dos autores sobre o processo de trabalho. Resultados O serviço de resposta rápida teve início em 2020. Até dezembro de 2023, foram produzidas 54 revisões rápidas e cinco mapas de evidências, abrangendo nove temáticas de Promoção da Saúde. Estes produtos foram desenvolvidos em quatorze etapas por uma equipe composta por coordenador, supervisoras, revisores e bibliotecária. O desenvolvimento das respostas rápidas se configurou um processo de tradução do conhecimento e envolveu a interação contínua entre as equipes demandantes e de produção. O estabelecimento de comunicação efetiva foi um fator crítico para que os produtos fossem entregues em tempo oportuno e alinhados às necessidades dos tomadores de decisão e seus apoiadores. Conclusão Os serviços de resposta rápida podem contribuir para melhorar o uso de evidências na tomada de decisão nas políticas e sistemas de saúde.
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- 2024
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34. Seed germination and emergence of Eragrostis tenuifolia (A. Rich.) Hochst. ex Steud. in response to environmental factors
- Author
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Hertwig Bittencourt Henrique von, Silva Bonome Lisandro Tomas da, Bortoli Pagnoncelli Fortunato de, Lana Marcos Alberto, and Trezzi Michelangelo Muzell
- Subjects
burial depth ,Eragrostis tenuifolia ,irradiance ,temperature ,weed biology ,weed ecology ,weed establishment ,Plant culture ,SB1-1110 - Abstract
Eragrostis tenuifolia is a weed species that is gaining ground in Brazil. This weed occurs in pastures, grasslands, crop fields, and roadsides. The objective of this study was to examine the effects of different environmental factors on E. tenuifolia seed germination and seedling emergence. The optimum constant temperature for germination was around 35-30°C. It was also found that 85% of seeds germinated under a 30/20°C alternate temperature regime. Light appears to have a positive effect on seed germination. No seedlings emerged when seeds were buried 3 cm or deeper. The results suggested that E. tenuifolia has the potential to spread into pastures and in no-tillage crop systems in Brazil. Measures such as the use of cover crops and/or soil cultivation can be used to limit germination and seedling emergence, respectively.
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- 2016
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35. Agile Manifesto of Non-Formal Education for Older Adults -- A Co-Design Experience
- Author
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Lis Ângela De Bortoli, Ana Carolina Bertoletti De Marchi, Ana Sara Castaman, Barbara Barbosa Neves, Helenice de Moura Scortegagna, and Lenir Antonio Hannecker
- Abstract
In educational gerontology, non-formal education emerges as a possibility for lifelong learning because it is more flexible and less bureaucratic than formal education. In this context, agile culture offers a potential strategy to enhance non-formal education. While there are four manifestos for agile culture in education, their application in later life is lacking in the literature. The objective is to discuss the agile culture in education and present the concept of the agile manifesto for non-formal education in later life. A co-design process was conducted to develop this manifesto, in which specialists in education, educational gerontology and agile culture, as well as an older person, participated in an active and collaborative way. The manifesto, which has four values and 18 principles, will serve as a guide for educators who intend to develop educational activities based on agile culture, for older adults, in the non-formal instance. It is proposed that the agile culture of non-formal education for older adults is fundamentally about collaboration, democracy, independence and autonomy, considering the needs of everyday life, as well as the multidimensionality and heterogeneity of those involved.
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- 2024
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36. Diffusion Schr\'{o}dinger Bridges for Bayesian Computation
- Author
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Heng, Jeremy, De Bortoli, Valentin, and Doucet, Arnaud
- Subjects
Statistics - Computation - Abstract
Denoising diffusion models are a novel class of generative models that have recently become extremely popular in machine learning. In this paper, we describe how such ideas can also be used to sample from posterior distributions and, more generally, any target distribution whose density is known up to a normalizing constant. The key idea is to consider a forward ``noising'' diffusion initialized at the target distribution which ``transports'' this latter to a normal distribution for long diffusion times. The time-reversal of this process, the ``denoising'' diffusion, thus ``transports'' the normal distribution to the target distribution and can be approximated so as to sample from the target. To accelerate simulation, we show how one can introduce and approximate a Schr\"{o}dinger bridge between these two distributions, i.e. a diffusion which transports the normal to the target in finite time., Comment: 10 pages
- Published
- 2023
37. Nearly $d$-Linear Convergence Bounds for Diffusion Models via Stochastic Localization
- Author
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Benton, Joe, De Bortoli, Valentin, Doucet, Arnaud, and Deligiannidis, George
- Subjects
Statistics - Machine Learning ,Computer Science - Machine Learning - Abstract
Denoising diffusions are a powerful method to generate approximate samples from high-dimensional data distributions. Recent results provide polynomial bounds on their convergence rate, assuming $L^2$-accurate scores. Until now, the tightest bounds were either superlinear in the data dimension or required strong smoothness assumptions. We provide the first convergence bounds which are linear in the data dimension (up to logarithmic factors) assuming only finite second moments of the data distribution. We show that diffusion models require at most $\tilde O(\frac{d \log^2(1/\delta)}{\varepsilon^2})$ steps to approximate an arbitrary distribution on $\mathbb{R}^d$ corrupted with Gaussian noise of variance $\delta$ to within $\varepsilon^2$ in KL divergence. Our proof extends the Girsanov-based methods of previous works. We introduce a refined treatment of the error from discretizing the reverse SDE inspired by stochastic localization.
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- 2023
38. Enhancing Temporal Planning Domains by Sequential Macro-actions (Extended Version)
- Author
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De Bortoli, Marco, Chrpa, Lukáš, Gebser, Martin, and Steinbauer-Wagner, Gerald
- Subjects
Computer Science - Artificial Intelligence - Abstract
Temporal planning is an extension of classical planning involving concurrent execution of actions and alignment with temporal constraints. Durative actions along with invariants allow for modeling domains in which multiple agents operate in parallel on shared resources. Hence, it is often important to avoid resource conflicts, where temporal constraints establish the consistency of concurrent actions and events. Unfortunately, the performance of temporal planning engines tends to sharply deteriorate when the number of agents and objects in a domain gets large. A possible remedy is to use macro-actions that are well-studied in the context of classical planning. In temporal planning settings, however, introducing macro-actions is significantly more challenging when the concurrent execution of actions and shared use of resources, provided the compliance to temporal constraints, should not be suppressed entirely. Our work contributes a general concept of sequential temporal macro-actions that guarantees the applicability of obtained plans, i.e., the sequence of original actions encapsulated by a macro-action is always executable. We apply our approach to several temporal planners and domains, stemming from the International Planning Competition and RoboCup Logistics League. Our experiments yield improvements in terms of obtained satisficing plans as well as plan quality for the majority of tested planners and domains.
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- 2023
39. Metropolis Sampling for Constrained Diffusion Models
- Author
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Fishman, Nic, Klarner, Leo, Mathieu, Emile, Hutchinson, Michael, and de Bortoli, Valentin
- Subjects
Computer Science - Machine Learning - Abstract
Denoising diffusion models have recently emerged as the predominant paradigm for generative modelling on image domains. In addition, their extension to Riemannian manifolds has facilitated a range of applications across the natural sciences. While many of these problems stand to benefit from the ability to specify arbitrary, domain-informed constraints, this setting is not covered by the existing (Riemannian) diffusion model methodology. Recent work has attempted to address this issue by constructing novel noising processes based on the reflected Brownian motion and logarithmic barrier methods. However, the associated samplers are either computationally burdensome or only apply to convex subsets of Euclidean space. In this paper, we introduce an alternative, simple noising scheme based on Metropolis sampling that affords substantial gains in computational efficiency and empirical performance compared to the earlier samplers. Of independent interest, we prove that this new process corresponds to a valid discretisation of the reflected Brownian motion. We demonstrate the scalability and flexibility of our approach on a range of problem settings with convex and non-convex constraints, including applications from geospatial modelling, robotics and protein design., Comment: NeurIPS 2023
- Published
- 2023
40. Geometric Neural Diffusion Processes
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Mathieu, Emile, Dutordoir, Vincent, Hutchinson, Michael J., De Bortoli, Valentin, Teh, Yee Whye, and Turner, Richard E.
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Statistics - Machine Learning ,Computer Science - Machine Learning - Abstract
Denoising diffusion models have proven to be a flexible and effective paradigm for generative modelling. Their recent extension to infinite dimensional Euclidean spaces has allowed for the modelling of stochastic processes. However, many problems in the natural sciences incorporate symmetries and involve data living in non-Euclidean spaces. In this work, we extend the framework of diffusion models to incorporate a series of geometric priors in infinite-dimension modelling. We do so by a) constructing a noising process which admits, as limiting distribution, a geometric Gaussian process that transforms under the symmetry group of interest, and b) approximating the score with a neural network that is equivariant w.r.t. this group. We show that with these conditions, the generative functional model admits the same symmetry. We demonstrate scalability and capacity of the model, using a novel Langevin-based conditional sampler, to fit complex scalar and vector fields, with Euclidean and spherical codomain, on synthetic and real-world weather data.
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- 2023
41. Dynamics of magnetization at infinite temperature in a Heisenberg spin chain
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Rosenberg, Eliott, Andersen, Trond, Samajdar, Rhine, Petukhov, Andre, Hoke, Jesse, Abanin, Dmitry, Bengtsson, Andreas, Drozdov, Ilya, Erickson, Catherine, Klimov, Paul, Mi, Xiao, Morvan, Alexis, Neeley, Matthew, Neill, Charles, Acharya, Rajeev, Allen, Richard, Anderson, Kyle, Ansmann, Markus, Arute, Frank, Arya, Kunal, Asfaw, Abraham, Atalaya, Juan, Bardin, Joseph, Bilmes, A., Bortoli, Gina, Bourassa, Alexandre, Bovaird, Jenna, Brill, Leon, Broughton, Michael, Buckley, Bob B., Buell, David, Burger, Tim, Burkett, Brian, Bushnell, Nicholas, Campero, Juan, Chang, Hung-Shen, Chen, Zijun, Chiaro, Benjamin, Chik, Desmond, Cogan, Josh, Collins, Roberto, Conner, Paul, Courtney, William, Crook, Alexander, Curtin, Ben, Debroy, Dripto, Barba, Alexander Del Toro, Demura, Sean, Di Paolo, Agustin, Dunsworth, Andrew, Earle, Clint, Farhi, E., Fatemi, Reza, Ferreira, Vinicius, Flores, Leslie, Forati, Ebrahim, Fowler, Austin, Foxen, Brooks, Garcia, Gonzalo, Genois, Élie, Giang, William, Gidney, Craig, Gilboa, Dar, Giustina, Marissa, Gosula, Raja, Dau, Alejandro Grajales, Gross, Jonathan, Habegger, Steve, Hamilton, Michael, Hansen, Monica, Harrigan, Matthew, Harrington, Sean, Heu, Paula, Hill, Gordon, Hoffmann, Markus, Hong, Sabrina, Huang, Trent, Huff, Ashley, Huggins, William, Ioffe, Lev, Isakov, Sergei, Iveland, Justin, Jeffrey, Evan, Jiang, Zhang, Jones, Cody, Juhas, Pavol, Kafri, D., Khattar, Tanuj, Khezri, Mostafa, Kieferová, Mária, Kim, Seon, Kitaev, Alexei, Klots, Andrey, Korotkov, Alexander, Kostritsa, Fedor, Kreikebaum, John Mark, Landhuis, David, Laptev, Pavel, Lau, Kim Ming, Laws, Lily, Lee, Joonho, Lee, Kenneth, Lensky, Yuri, Lester, Brian, Lill, Alexander, Liu, Wayne, Livingston, William P., Locharla, A., Mandrà, Salvatore, Martin, Orion, Martin, Steven, McClean, Jarrod, McEwen, Matthew, Meeks, Seneca, Miao, Kevin, Mieszala, Amanda, Montazeri, Shirin, Movassagh, Ramis, Mruczkiewicz, Wojciech, Nersisyan, Ani, Newman, Michael, Ng, Jiun How, Nguyen, Anthony, Nguyen, Murray, Niu, M., O'Brien, Thomas, Omonije, Seun, Opremcak, Alex, Potter, Rebecca, Pryadko, Leonid, Quintana, Chris, Rhodes, David, Rocque, Charles, Rubin, N., Saei, Negar, Sank, Daniel, Sankaragomathi, Kannan, Satzinger, Kevin, Schurkus, Henry, Schuster, Christopher, Shearn, Michael, Shorter, Aaron, Shutty, Noah, Shvarts, Vladimir, Sivak, Volodymyr, Skruzny, Jindra, Smith, Clarke, Somma, Rolando, Sterling, George, Strain, Doug, Szalay, Marco, Thor, Douglas, Torres, Alfredo, Vidal, Guifre, Villalonga, Benjamin, Heidweiller, Catherine Vollgraff, White, Theodore, Woo, Bryan, Xing, Cheng, Yao, Jamie, Yeh, Ping, Yoo, Juhwan, Young, Grayson, Zalcman, Adam, Zhang, Yaxing, Zhu, Ningfeng, Zobrist, Nicholas, Neven, Hartmut, Babbush, Ryan, Bacon, Dave, Boixo, Sergio, Hilton, Jeremy, Lucero, Erik, Megrant, Anthony, Kelly, Julian, Chen, Yu, Smelyanskiy, Vadim, Khemani, Vedika, Gopalakrishnan, Sarang, Prosen, Tomaž, and Roushan, Pedram
- Subjects
Quantum Physics - Abstract
Understanding universal aspects of quantum dynamics is an unresolved problem in statistical mechanics. In particular, the spin dynamics of the 1D Heisenberg model were conjectured to belong to the Kardar-Parisi-Zhang (KPZ) universality class based on the scaling of the infinite-temperature spin-spin correlation function. In a chain of 46 superconducting qubits, we study the probability distribution, $P(\mathcal{M})$, of the magnetization transferred across the chain's center. The first two moments of $P(\mathcal{M})$ show superdiffusive behavior, a hallmark of KPZ universality. However, the third and fourth moments rule out the KPZ conjecture and allow for evaluating other theories. Our results highlight the importance of studying higher moments in determining dynamic universality classes and provide key insights into universal behavior in quantum systems.
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- 2023
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42. Unbalanced Diffusion Schr\'odinger Bridge
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Pariset, Matteo, Hsieh, Ya-Ping, Bunne, Charlotte, Krause, Andreas, and De Bortoli, Valentin
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Computer Science - Machine Learning - Abstract
Schr\"odinger bridges (SBs) provide an elegant framework for modeling the temporal evolution of populations in physical, chemical, or biological systems. Such natural processes are commonly subject to changes in population size over time due to the emergence of new species or birth and death events. However, existing neural parameterizations of SBs such as diffusion Schr\"odinger bridges (DSBs) are restricted to settings in which the endpoints of the stochastic process are both probability measures and assume conservation of mass constraints. To address this limitation, we introduce unbalanced DSBs which model the temporal evolution of marginals with arbitrary finite mass. This is achieved by deriving the time reversal of stochastic differential equations with killing and birth terms. We present two novel algorithmic schemes that comprise a scalable objective function for training unbalanced DSBs and provide a theoretical analysis alongside challenging applications on predicting heterogeneous molecular single-cell responses to various cancer drugs and simulating the emergence and spread of new viral variants.
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- 2023
43. The VISCACHA survey -- VII. Assembly history of the Magellanic Bridge and SMC Wing from star clusters
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Oliveira, R. A. P., Maia, F. F. S., Barbuy, B., Dias, B., Santos Jr., J. F. C., Souza, S. O., Kerber, L. O., Bica, E., Sanmartim, D., Quint, B., Fraga, L., Armond, T., Minniti, D., Parisi, M. C., Santrich, O. J. Katime, Angelo, M. S., Pérez-Villegas, A., and De Bórtoli, B. J.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics - Abstract
The formation scenario of the Magellanic Bridge during an encounter between the Large and Small Magellanic Clouds $\sim200\,$Myr ago, as proposed by $N$-body models, would be imprinted in the chemical enrichment and kinematics of its stars, and sites of ongoing star formation along its extension. We present an analysis of 33 Bridge star clusters using photometry obtained with the SOAR 4-m telescope equipped with adaptive optics for the VISCACHA survey. We performed a membership selection and derived self-consistent ages, metallicities, distances and reddening values via statistical isochrone fitting, as well as tidal radii and integrated masses from structure analysis. Two groups are clearly detected: 13 well-studied clusters older than the Bridge, with $0.5-6.8\,$Gyr and $\rm{[Fe/H]}<-0.6\,$dex; and 15 clusters with $< 200\,$Myr and $\rm{[Fe/H]}>-0.5\,$dex, probably formed in-situ. The old clusters follow the overall age and metallicity gradients of the SMC, whereas the younger ones are uniformly distributed along the Bridge. The main results are as follows: $(i)$ we derive ages and metallicities for the first time for 9 and 18 clusters, respectively; $(ii)$ we detect two metallicity dips in the age-metallicity relation of the Bridge at $\sim 200\,$Myr and $1.5\,$Gyr ago for the first time, possibly chemical signatures of the formation of the Bridge and Magellanic Stream; $(iii)$ we estimate a minimum stellar mass for the Bridge of $3-5 \times 10^5\,M_\odot$; $(iv)$ we confirm that all the young Bridge clusters at $\rm{RA} < 3^h$ are metal-rich $\rm{[Fe/H]} \sim -0.4\,$dex., Comment: 15 pages, 13 figures + appendix. Accepted for publication in MNRAS
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- 2023
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44. New insights in the mechanism of the SARS-CoV-2 Mpro inhibition by benzisoselenazolones and diselenides
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Sancineto, Luca, Mangiavacchi, Francesca, Dabrowska, Agnieszka, Pacuła-Miszewska, Agata J., Obieziurska-Fabisiak, Magdalena, Scimmi, Cecilia, Ceccucci, Veronica, Kong, Juan, Zhao, Yao, Ciancaleoni, Gianluca, Nascimento, Vanessa, Rizzuti, Bruno, Bortoli, Marco, Orian, Laura, Kula-Pacurar, Anna, Yang, Haitao, Ścianowski, Jacek, Lei, Ying, Pyrc, Krzysztof, and Santi, Claudio
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- 2024
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45. Preventing illegal seafood trade using machine-learning assisted microbiome analysis
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Peruzza, Luca, Cicala, Francesco, Milan, Massimo, Rovere, Giulia Dalla, Patarnello, Tomaso, Boffo, Luciano, Smits, Morgan, Iori, Silvia, De Bortoli, Angelo, Schiavon, Federica, Zentilin, Aurelio, Fariselli, Piero, Cardazzo, Barbara, and Bargelloni, Luca
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- 2024
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46. Research evidence communication for policy-makers: a rapid scoping review on frameworks, guidance and tools, and barriers and facilitators
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Barreto, Jorge Otávio Maia, de Melo, Roberta Crevelário, da Silva, Letícia Aparecida Lopes Bezerra, de Araújo, Bruna Carolina, de Freitas Oliveira, Cintia, Toma, Tereza Setsuko, de Bortoli, Maritsa Carla, Demaio, Peter Nichols, and Kuchenmüller, Tanja
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- 2024
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47. The role of nurses in implementation of public policy on adolescent health in Colombia, Ecuador, and Peru
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De Bortoli Cassiani, Silvia Helena, Moreno Dias, Bruna, Rivera, Jairo, Deubel, Andre Noel Roth, Pérez, Taycia Ramírez, Malpica, Dinora Rebolledo, and Caffe, Sonja
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- 2024
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48. Decisional needs and interventions for young women considering contraceptive options: an umbrella review
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Bortoli, Marit Müller De, Kantymir, Sienna, Pacheco-Brousseau, Lissa, Dahl, Bente, Hansen, Elisabeth Holm, Lewis, Krystina B., Zhang, Qian, Cole, Victoria, Westergren, Thomas, and Stacey, Dawn
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- 2024
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49. Detection of multidrug-resistant bacteria in the nasal cavities and evaluation of sinus disorders in patients undergoing Le Fort I osteotomy
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Mendes, Bárbara M., Bortoli, Évelin S., Zaleski, Catherine B., Martinelli, Maila P. D., Pascoal, Vanessa F., and Oliveira, Sílvia D.
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- 2024
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50. Pure niobium manufactured by Laser-Based Powder Bed Fusion: influence of process parameters and supports on as-built surface quality
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Candela, Silvia, Rebesan, Pietro, De Bortoli, Diego, Carmignato, Simone, Zanini, Filippo, Candela, Valentina, Dima, Razvan, Pepato, Adriano, Weinmann, Markus, and Bettini, Paolo
- Published
- 2024
- Full Text
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