48 results on '"Bommi P"'
Search Results
2. A Systematic Literature Review of Explainable AI for Software Engineering
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Mohammadkhani, Ahmad Haji, Bommi, Nitin Sai, Daboussi, Mariem, Sabnis, Onkar, Tantithamthavorn, Chakkrit, and Hemmati, Hadi
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Computer Science - Software Engineering - Abstract
Context: In recent years, leveraging machine learning (ML) techniques has become one of the main solutions to tackle many software engineering (SE) tasks, in research studies (ML4SE). This has been achieved by utilizing state-of-the-art models that tend to be more complex and black-box, which is led to less explainable solutions that reduce trust and uptake of ML4SE solutions by professionals in the industry. Objective: One potential remedy is to offer explainable AI (XAI) methods to provide the missing explainability. In this paper, we aim to explore to what extent XAI has been studied in the SE community (XAI4SE) and provide a comprehensive view of the current state-of-the-art as well as challenge and roadmap for future work. Method: We conduct a systematic literature review on 24 (out of 869 primary studies that were selected by keyword search) most relevant published studies in XAI4SE. We have three research questions that were answered by meta-analysis of the collected data per paper. Results: Our study reveals that among the identified studies, software maintenance (\%68) and particularly defect prediction has the highest share on the SE stages and tasks being studied. Additionally, we found that XAI methods were mainly applied to classic ML models rather than more complex models. We also noticed a clear lack of standard evaluation metrics for XAI methods in the literature which has caused confusion among researchers and a lack of benchmarks for comparisons. Conclusions: XAI has been identified as a helpful tool by most studies, which we cover in the systematic review. However, XAI4SE is a relatively new domain with a lot of untouched potentials, including the SE tasks to help with, the ML4SE methods to explain, and the types of explanations to offer. This study encourages the researchers to work on the identified challenges and roadmap reported in the paper.
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- 2023
3. Trends in Paper-Based Sensing Devices for Clinical and Environmental Monitoring
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Kummari, Shekher, Panicker, Lakshmi R, Bommi, Jagadeeswara Rao, Karingula, Sampath, Kumar, Venisheety Sunil, Mahato, Kuldeep, and Goud, Kotagiri Yugender
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Analytical Chemistry ,Chemical Sciences ,Bioengineering ,Detection ,screening and diagnosis ,4.1 Discovery and preclinical testing of markers and technologies ,Paper ,Ecosystem ,Biosensing Techniques ,Environmental Monitoring ,Environmental Pollutants ,Electrochemical Techniques ,biosensors ,clinical diagnostics ,electrochemical sensors ,environmental monitoring ,optical sensors ,paper-based sensing devices ,Biochemistry and Cell Biology ,Biochemistry and cell biology ,Analytical chemistry - Abstract
Environmental toxic pollutants and pathogens that enter the ecosystem are major global issues. Detection of these toxic chemicals/pollutants and the diagnosis of a disease is a first step in efficiently controlling their contamination and spread, respectively. Various analytical techniques are available to detect and determine toxic chemicals/pathogens, including liquid chromatography, HPLC, mass spectroscopy, and enzyme-linked immunosorbent assays. However, these sensing strategies have some drawbacks such as tedious sample pretreatment and preparation, the requirement for skilled technicians, and dependence on large laboratory-based instruments. Alternatively, biosensors, especially paper-based sensors, could be used extensively and are a cost-effective alternative to conventional laboratory testing. They can improve accessibility to testing to identify chemicals and pollutants, especially in developing countries. Due to its low cost, abundance, easy disposal (by incineration, for example) and biocompatible nature, paper is considered a versatile material for the development of environmentally friendly electrochemical/optical (bio) sensor devices. This review presents an overview of sensing platforms constructed from paper, pointing out the main merits and demerits of paper-based sensing systems, their fabrication techniques, and the different optical/electrochemical detection techniques that they exploit.
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- 2023
4. Age-stratified comorbid and pharmacologic analysis of patients with glioblastoma
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Erik E. Rabin, Jonathan Huang, Miri Kim, Andreas Mozny, Kristen L. Lauing, Manon Penco-Campillo, Lijie Zhai, Prashant Bommi, Xinlei Mi, Erica A. Power, Vikram C. Prabhu, Douglas E. Anderson, Kevin P. Barton, Theresa L. Walunas, Gary E. Schiltz, Christina Amidei, Pilar Sanchez-Gomez, Jigisha P. Thakkar, Rimas V. Lukas, and Derek A. Wainwright
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Elderly ,Glioma ,Dementia ,Confusion ,Delirium ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: Increased age is a strong and unfavorable prognostic factor for patients with glioblastoma (GBM). However, the relationships between stratified patient age, comorbidities, and medications have yet to be explored in GBM patient survival analyses. Objective: To evaluate co-morbid conditions, tumor-related symptoms, medication prescriptions, and subject age for patients with GBM and to establish potential targets for prospective studies. Methods: Electronic health records for 565 patients with IDHwt GBM were evaluated at a single center between January 1, 2000 and August 9, 2021 were retrospectively assessed. Data were stratified by MGMT promoter methylation status when available and were used to construct multivariable time-dependent cox models and intra-cohort hazards. Results: Younger (
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- 2024
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5. Impact of RegTech on compliance risk due to financial misconduct in the United States banking industry
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Jeyasingh, Benita Bommi Felicia
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- 2023
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6. A Novel Weighted Consensus Machine Learning Model for COVID-19 Infection Classification Using CT Scan Images
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Bondugula, Rohit Kumar, Udgata, Siba K., and Bommi, Nitin Sai
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- 2023
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7. Region Centric Multi Feature Growth Analysis Model for Efficient Plant Selection and Recommendation
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Bommi, K., Evanjaline, D. J., and Kumar, K. Mohan
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- 2023
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8. Naproxen chemoprevention promotes immune activation in Lynch syndrome colorectal mucosa
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Reyes-Uribe, Laura, Wu, Wenhui, Gelincik, Ozkan, Bommi, Prashant V, Francisco-Cruz, Alejandro, Solis, Luisa M, Lynch, Patrick M, Lim, Ramona, Stoffel, Elena M, Kanth, Priyanka, Samadder, N Jewel, Mork, Maureen E, Taggart, Melissa W, Milne, Ginger L, Marnett, Lawrence J, Vornik, Lana, Liu, Diane D, Revuelta, Maria, Chang, Kyle, You, Y Nancy, Kopelovich, Levy, Wistuba, Ignacio I, Lee, J Jack, Sei, Shizuko, Shoemaker, Robert H, Szabo, Eva, Richmond, Ellen, Umar, Asad, Perloff, Marjorie, Brown, Powel H, Lipkin, Steven M, and Vilar, Eduardo
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Biotechnology ,Digestive Diseases ,Colo-Rectal Cancer ,Cancer ,Prevention ,Clinical Trials and Supportive Activities ,Clinical Research ,Genetics ,Adult ,Aged ,Animals ,Anti-Inflammatory Agents ,Non-Steroidal ,Chemoprevention ,Colorectal Neoplasms ,Hereditary Nonpolyposis ,Dinoprostone ,Disease Models ,Animal ,Female ,Humans ,Intestinal Mucosa ,Male ,Mice ,Middle Aged ,Naproxen ,HNPCC syndrome ,cancer syndromes ,chemoprevention ,gene expression ,non-steroidal anti-inflammatory drugs ,Clinical Sciences ,Paediatrics and Reproductive Medicine ,Gastroenterology & Hepatology ,Clinical sciences ,Nutrition and dietetics - Abstract
ObjectivePatients with Lynch syndrome (LS) are at markedly increased risk for colorectal cancer. It is being increasingly recognised that the immune system plays an essential role in LS tumour development, thus making an ideal target for cancer prevention. Our objective was to evaluate the safety, assess the activity and discover novel molecular pathways involved in the activity of naproxen as primary and secondary chemoprevention in patients with LS.DesignWe conducted a Phase Ib, placebo-controlled, randomised clinical trial of two dose levels of naproxen sodium (440 and 220 mg) administered daily for 6 months to 80 participants with LS, and a co-clinical trial using a genetically engineered mouse model of LS and patient-derived organoids (PDOs).ResultsOverall, the total number of adverse events was not different across treatment arms with excellent tolerance of the intervention. The level of prostaglandin E2 in the colorectal mucosa was significantly decreased after treatment with naproxen when compared with placebo. Naproxen activated different resident immune cell types without any increase in lymphoid cellularity, and changed the expression patterns of the intestinal crypt towards epithelial differentiation and stem cell regulation. Naproxen demonstrated robust chemopreventive activity in a mouse co-clinical trial and gene expression profiles induced by naproxen in humans showed perfect discrimination of mice specimens with LS and PDOs treated with naproxen and control.ConclusionsNaproxen is a promising strategy for immune interception in LS. We have discovered naproxen-induced gene expression profiles for their potential use as predictive biomarkers of drug activity.Trial registration numbergov Identifier: NCT02052908.
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- 2021
9. Deletion analysis of BMI1 oncoprotein identifies its negative regulatory domain
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Bommi Prashant V, Dimri Manjari, Sahasrabuddhe Anagh A, Yadav Ajay K, Sainger Rachana, and Dimri Goberdhan P
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The polycomb group (PcG) protein BMI1 is an important regulator of development. Additionally, aberrant expression of BMI1 has been linked to cancer stem cell phenotype and oncogenesis. In particular, its overexpression has been found in several human malignancies including breast cancer. Despite its established role in stem cell maintenance, cancer and development, at present not much is known about the functional domains of BMI1 oncoprotein. In the present study, we carried out a deletion analysis of BMI1 to identify its negative regulatory domain. Results We report that deletion of the C-terminal domain of BMI1, which is rich in proline-serine (PS) residues and previously described as PEST-like domain, increased the stability of BMI1, and promoted its pro-oncogenic activities in human mammary epithelial cells (HMECs). Specifically, overexpression of a PS region deleted mutant of BMI1 increased proliferation of HMECs and promoted an epithelial-mesenchymal transition (EMT) phenotype in the HMECs. Furthermore, when compared to the wild type BMI1, exogenous expression of the mutant BMI1 led to a significant downregulation of p16INK4a and an efficient bypass of cellular senescence in human diploid fibroblasts. Conclusions In summary, our data suggest that the PS domain of BMI1 is involved in its stability and that it negatively regulates function of BMI1 oncoprotein. Our results also suggest that the PS domain of BMI1 could be targeted for the treatment of proliferative disorders such as cancer and aging.
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- 2010
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10. Evolution of Stability-Indicating Method in the Quantification of Related Substances and Degradation Products of Elagolix Sodium: Quality by Design-Driven Approach Utilizing Ultra-high Performance Liquid Chromatography
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Bommi, Sivaganesh, Jayanty, Subbalakshmi, Tirumalaraju, Satyanarayana Raju, Kola, Suresh, and Kallam, Venkata Siva Rama Krishna Reddy
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- 2023
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11. Estimation of Flank Wear in Turning of Nimonic C263 Super Alloy Based on Novel MSER Algorithm and Deep Patten Network
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Bommi, R. M., Ezilarasan, Chakaravarthy, Sudeshkumar, M. P., and Vinoth, T.
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- 2022
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12. Adiabatic Configurable Reversible Synthesizer for 5G Applications
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Bommi, R. M. and Christo, Mary Subaja
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- 2022
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13. Chemical inhibition of oxygen-sensing prolyl hydroxylases impairs angiogenic competence of human vascular endothelium through metabolic reprogramming
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Ratnakar Tiwari, Prashant V. Bommi, Peng Gao, Matthew J. Schipma, Yalu Zhou, Susan E. Quaggin, Navdeep S. Chandel, and Pinelopi P. Kapitsinou
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Biological sciences ,Metabolomics ,Transcriptomics ,Science - Abstract
Summary: Endothelial cell (EC) metabolism has emerged as a driver of angiogenesis. While hypoxia inactivates the oxygen sensors prolyl-4 hydroxylase domain-containing proteins 1–3 (PHD1-3) and stimulates angiogenesis, the effects of PHDs on EC functions remain poorly defined. Here, we investigated the impact of chemical PHD inhibition by dimethyloxalylglycine (DMOG) on angiogenic competence and metabolism of human vascular ECs. DMOG reduced EC proliferation, migration, and tube formation capacities, responses that were associated with an unfavorable metabolic reprogramming. While glycolytic genes were induced, multiple genes encoding sub-units of mitochondrial complex I were suppressed with concurrent decline in nicotinamide adenine dinucleotide (NAD+) levels. Importantly, the DMOG-induced defects in EC migration could be partially rescued by augmenting NAD+ levels through nicotinamide riboside or citrate supplementation. In summary, by integrating functional assays, transcriptomics, and metabolomics, we provide insights into the effects of PHD inhibition on angiogenic competence and metabolism of human vascular ECs.
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- 2022
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14. Sexual Practice and Perception of HIV/AIDS And Health Seeking Behaviour Among Men Who Have Sex with Men in Hyderabad
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Krishna Nalla, Vijay kumar Maktha, Bhanuja Rani Bommi, and Vinod Kumar Gokul
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Men who have Sex with Men (MSM) ,Target Intervention Site ,HIV/AIDS ,Sexual practice ,perceptions ,Health seeking behaviour ,Public aspects of medicine ,RA1-1270 - Abstract
Introduction: The Men who have Sex with Men (MSM) are a vulnerable population and need special attention in fight against the HIV/AIDS. The HIV trend has been an increasing trend among MSM. Study was done to determine the factors influencing sexual practice, perception of HIV/AIDS and Health seeking behavior among MSM in Hyderabad. Methodology: This was a facility based cross sectional study undertaken in the Targeted Intervention sites in Hyderabad, Telangana. A total of 300 Men who have Sex with Men who are above 18 years of age and registered were included. All the MSM visiting the TI centres during the study period were interviewed personally in their local language by using a pre-designed, pre-tested, semi structured and pre-coded proforma. Results: Mean age was 27.68 years. Majority of participants 119(39.66%) had their first sexual encounter at the age of 15-17 years. 130 (43.33%) visited the Target Intervention centres 1-2 times during the last month. About half of the participants i.e, 141(47.00%) belongs to Kothi Group and most of the MSM i.e, 198(66.00%) used condom during the sex with male last time. Conclusions: Stigma and cultural intolerance of same-sex relations are often largely to blame for rising epidemics, and until these issues are addressed it will be difficult to make headway in reducing HIV infection levels among MSM - which, in turn, will hinder the wider global efforts to manage HIV and AIDS.
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- 2022
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15. Trends in Paper-Based Sensing Devices for Clinical and Environmental Monitoring
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Shekher Kummari, Lakshmi R. Panicker, Jagadeeswara Rao Bommi, Sampath Karingula, Venisheety Sunil Kumar, Kuldeep Mahato, and Kotagiri Yugender Goud
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biosensors ,clinical diagnostics ,environmental monitoring ,paper-based sensing devices ,electrochemical sensors ,optical sensors ,Biotechnology ,TP248.13-248.65 - Abstract
Environmental toxic pollutants and pathogens that enter the ecosystem are major global issues. Detection of these toxic chemicals/pollutants and the diagnosis of a disease is a first step in efficiently controlling their contamination and spread, respectively. Various analytical techniques are available to detect and determine toxic chemicals/pathogens, including liquid chromatography, HPLC, mass spectroscopy, and enzyme-linked immunosorbent assays. However, these sensing strategies have some drawbacks such as tedious sample pretreatment and preparation, the requirement for skilled technicians, and dependence on large laboratory-based instruments. Alternatively, biosensors, especially paper-based sensors, could be used extensively and are a cost-effective alternative to conventional laboratory testing. They can improve accessibility to testing to identify chemicals and pollutants, especially in developing countries. Due to its low cost, abundance, easy disposal (by incineration, for example) and biocompatible nature, paper is considered a versatile material for the development of environmentally friendly electrochemical/optical (bio) sensor devices. This review presents an overview of sensing platforms constructed from paper, pointing out the main merits and demerits of paper-based sensing systems, their fabrication techniques, and the different optical/electrochemical detection techniques that they exploit.
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- 2023
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16. Recent Trends in Biosensing and Diagnostic Methods for Novel Cancer Biomarkers
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Jagadeeswara Rao Bommi, Shekher Kummari, Kavitha Lakavath, Reshmi A. Sukumaran, Lakshmi R. Panicker, Jean Louis Marty, and Kotagiri Yugender Goud
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cancer diagnosis ,biomarkers ,electrochemical biosensors ,optical biosensors ,aptamers ,antibodies ,Biotechnology ,TP248.13-248.65 - Abstract
Cancer is one of the major public health issues in the world. It has become the second leading cause of death, with approximately 75% of cancer deaths transpiring in low- or middle-income countries. It causes a heavy global economic cost estimated at more than a trillion dollars per year. The most common cancers are breast, colon, rectum, prostate, and lung cancers. Many of these cancers can be treated effectively and cured if detected at the primary stage. Nowadays, around 50% of cancers are detected at late stages, leading to serious health complications and death. Early diagnosis of cancer diseases substantially increases the efficient treatment and high chances of survival. Biosensors are one of the potential screening methodologies useful in the early screening of cancer biomarkers. This review summarizes the recent findings about novel cancer biomarkers and their advantages over traditional biomarkers, and novel biosensing and diagnostic methods for them; thus, this review may be helpful in the early recognition and monitoring of treatment response of various human cancers.
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- 2023
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17. A Machine Learning Approach to Optimize, Model, and Predict the Machining Factors in Dry Drilling of Nimonic C263
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S. Lakshmana Kumar, V. Jacintha, A. Mahendran, R. M. Bommi, M. Nagaraj, and Umamahesawari Kandasamy
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
In this present paper, the machine learning approach is used to optimize, model, and predict the factors during drilling Nimonic C263 under dry mode. Nimonic C263 is tough to machine aero alloys, and it is required to find a predictive model and to optimize the factors in drilling this alloy before the actual machining process. It helps to avoid the actual machining cost and material cost. Experimental trails are planned based on Taguchi analysis, and L27 orthogonal array was chosen. Speed, feed, and approach angle of drill were considered as controlling factors, and cutting force and surface roughness were considered as responses. The feed forward neural network (FFNN) was used to develop a predictive model. The prediction capability was validated with a predictive model developed by Taguchi analysis. Furthermore, ANOVA (analysis of variance) analysis was done to find out the most influence factor on the responses.
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- 2022
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18. CREBBP/EP300 acetyltransferase inhibition disrupts FOXA1-bound enhancers to inhibit the proliferation of ER+ breast cancer cells.
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Archana Bommi-Reddy, Sungmi Park-Chouinard, David N Mayhew, Esteban Terzo, Aparna Hingway, Michael J Steinbaugh, Jonathan E Wilson, Robert J Sims, and Andrew R Conery
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Medicine ,Science - Abstract
Therapeutic targeting of the estrogen receptor (ER) is a clinically validated approach for estrogen receptor positive breast cancer (ER+ BC), but sustained response is limited by acquired resistance. Targeting the transcriptional coactivators required for estrogen receptor activity represents an alternative approach that is not subject to the same limitations as targeting estrogen receptor itself. In this report we demonstrate that the acetyltransferase activity of coactivator paralogs CREBBP/EP300 represents a promising therapeutic target in ER+ BC. Using the potent and selective inhibitor CPI-1612, we show that CREBBP/EP300 acetyltransferase inhibition potently suppresses in vitro and in vivo growth of breast cancer cell line models and acts in a manner orthogonal to directly targeting ER. CREBBP/EP300 acetyltransferase inhibition suppresses ER-dependent transcription by targeting lineage-specific enhancers defined by the pioneer transcription factor FOXA1. These results validate CREBBP/EP300 acetyltransferase activity as a viable target for clinical development in ER+ breast cancer.
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- 2022
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19. NER-factor DDB2 regulates HIF1α and hypoxia-response genes in HNSCC
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Bommi, Prashant V., Chand, Vaibhav, Mukhopadhyay, Nishit K., Raychaudhuri, Pradip, and Bagchi, Srilata
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- 2020
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20. Distinct rhodamine B derivatives exhibiting dual effect of anticancer activity and fluorescence property
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Himabindu Battula, Sivaganesh Bommi, Yamini Bobde, Tarun Patel, Balaram Ghosh, and Subbalakshmi Jayanty
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Rhodamine B amides ,Fluorescent probes ,Bandgap ,CT-DNA interaction ,Anticancer activity ,Cancer cell imaging agents ,Chemistry ,QD1-999 - Abstract
Design and application of novel Rhodamine B amide derivatives achieved especially with simple secondary amines, and furthermore exhibiting fluorescence property and anticancer activity is not reported elsewhere. Further functionalization of rhodamine B at the carboxylic acid group with selected secondary amines generated amides, avoiding cyclization and simultaneously sustaining fluorescence. Currently, we have designed and developed three well defined novel rhodamine B amide derivatives by reacting rhodamine B (RHB) with thiomorpholine, bis-(2-chloroethyl) amine and morpholine (the side chains of several anticancer drugs) via rhodamine B acid chloride which resulted in fluorophores namely rhodamine B thiomorpholine amide (1), rhodamine B bis(2-chloroethyl)amine amide (2) and rhodamine B morpholine amide (3). All the three RHB amides were thoroughly characterized using analytical techniques like FT-IR, Mass, 1H NMR, 13C NMR spectroscopy and HPLC. Obtained compounds displayed molecular material attributes as well as anticancer activity. The wavelength of maximum absorption and emission of solutions occurred at ~560 nm and ~583 nm. Quantum yields (Φf = 0.40) and average fluorescence decay (~1.60 ns) of amides was comparable to RHB (1.72 ns). Optical bandgap of solids revealed semiconducting property (~ 2.9 eV). Acquired rhodamine B amides were found to be insensitive over a wide range of pH i.e. from 2 to 10 suggesting their plausible utility in biological labeling, moreover, showed potential anticancer activity against B16F10 (murine melanoma cells), MDA-MB231 (human breast cancer cells), A549 (human lung cancer cells) while they displayed less toxicity to normal HEK 293 (human embryonic kidney) cells. Interestingly, the cellular uptake study manifested that more quantity of the compound were taken up by the cancer cells compared to normal cells which indicate that these amides might become potential candidates to be developed as theranostic agents.
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- 2021
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21. High Performance Reversible Direct Data Synthesizer for Radio Frequency Applications
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Bommi, R. M. and Raja, S. Selvakumar
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- 2019
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22. Analysis of flank wear using sobel edge detection technique
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Ganesh, Vedagiri Dilli, Bommi, Rammohan, and Palani, Sivaprakasam
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- 2024
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23. Make the right measurement: Discovery of an allosteric inhibition site for p300-HAT
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Anna S. Gardberg, Annissa J. Huhn, Richard Cummings, Archana Bommi-Reddy, Florence Poy, Jeremy Setser, Valerie Vivat, Francois Brucelle, and Jonathan Wilson
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Crystallography ,QD901-999 - Abstract
Histone acetyltransferases (HATs) and histone deacetylases (HDACs) catalyze the dynamic and reversible acetylation of proteins, an epigenetic regulatory mechanism associated with multiple cancers. Indeed, HDAC inhibitors are already approved in the clinic. The HAT paralogs p300 and CREB-binding protein (CBP) have been implicated in human pathological conditions including several hematological malignancies and androgen receptor-positive prostate cancer. Others have reported CoA-competitive inhibitors of p300 and CBP with cell-based activity. Here, we describe 2 compounds, CPI-076 and CPI-090, discovered through p300-HAT high throughput screening screening, which inhibit p300-HAT via binding at an allosteric site. We present the high resolution (1.7 and 2.3 Å) co-crystal structures of these molecules bound to a previously undescribed allosteric site of p300-HAT. Derivatization yielded actionable structure-activity relationships, but the full-length enzymatic assay demonstrated that this allosteric HAT inhibitor series was artifactual, inhibiting only the HAT domain of p300 with no effect on the full-length enzyme.
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- 2019
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24. The Influence of School Tracking Systems on Educational Expectations: A Comparative Study of Austria and Italy
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Lee, Bommi
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School tracking is usually criticised as a mechanism for social and cultural reproduction. Evidence from the literature shows a significant effect of early tracking on social inequality. Some studies also show that early tracking has a negative effect on the probability of completing higher education. This study uses PISA 2009 data and the propensity score matching technique to compare the effect of academic and vocational tracks on students' educational expectations and whether the effect varies across different socio-economic status in Austria, a country with an early tracking system, and Italy, a country with a later tracking system. The results show that students in Italy have significantly higher educational expectations for academic tertiary degrees than students in Austria. However, the findings do not show any evidence that the effect of tracking on expectations varies by students' socio-economic status in either country. The findings suggest that a later tracking system is associated with higher probabilities of having academic educational expectations; however, this finding should be interpreted with caution as the higher education and vocational education systems are different between the two countries, as well as the valuation of tertiary degrees in the labour market.
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- 2014
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25. P09.14 The role of IDO1 and cellular senescence in the efficacy of PD-1 pathway blockade and radiotherapy in aged mice with glioblastoma
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Asimakidou, E, primary, Bell, A, additional, Bommi, P, additional, and Wainwright, D, additional
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- 2022
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26. Socioeconomic Strata, Mobile Technology, and Education: A Comparative Analysis
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Kim, Paul, Hagashi, Teresita, Carillo, Laura, Gonzales, Irina, Makany, Tamas, Lee, Bommi, and Garate, Alberto
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Mobile devices are highly portable, easily distributable, substantially affordable, and have the potential to be pedagogically complementary resources in education. This study, incorporating mixed method analyses, discusses the implications of a mobile learning technology-based learning model in two public primary schools near the Mexico-USA border in the state of Baja California, Mexico. One school was located in an urban slum and the other in a rural village community. Empirical and ethnographic data were collected through a series of achievement tests, observations, surveys, and interviews involving 160 grade school children recruited by convenience sampling. The general technology infrastructure, distinctive features of mobile learning to supplement literacy development, profound contextual phenomena arising from the two uniquely underserved communities, and social factors possibly influencing the educational experiences are discussed. The findings suggest that students in the rural village, seriously lacking educational resources and technology exposure, may have benefited substantially more from mobile technologies than urban school students possibly due to their relatively higher socio-economic status and higher parental involvement and interest in education. In contrast, there was no evidence of interaction with parental education levels, the experience of teachers or school principals, or the teacher's perception or preparation of the technology. Overall, the mobile learning technology adoption was rapid, seamless, and actively driven by the students rather than the teacher. The challenges of the phenomenal migratory nature of most families in this unique geographical region are also discussed to benefit future studies.
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- 2011
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27. Identification and Characterization of a Novel Indoleamine 2,3-Dioxygenase 1 Protein Degrader for Glioblastoma.
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Bollu, Lakshmi R., Bommi, Prashant V., Monsen, Paige J., Zhai, Lijie, Lauing, Kristen L., Bell, April, Kim, Miri, Ladomersky, Erik, Yang, Xinyu, Platanias, Leonidas C., Matei, Daniela E., Bonini, Marcelo G., Munshi, Hidayatullah G., Hashizume, Rintaro, Wu, Jennifer D., Zhang, Bin, James, Charles David, Chen, Peiwen, Kocherginsky, Masha, and Horbinski, Craig
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- 2022
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28. Energy optimization using modified data localization correction approach (MDLCA) algorithm for improving energy of sensor node comparing with data localization correction approach (DLCA)
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Kandukuri, Narasimha Reddy and Rammohan, Bommi
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- 2023
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29. Endoscope-Assisted Multilayered Repair in Oronasal Fistula
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Kim, Boo-Young and Seo, Bommi Florence
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Oronasal fistula following cleft palate repair is a considerable complication with a recurrence rate of 33% to 37% and remains a challenging problem for surgeons. Furthermore, many patients have undergone several operations and experienced scar problems and other forms of morbidity. Therefore, we report a multilayered technique for oronasal fistula closure using an endoscopic nasal inferior turbinate composite graft with a palatal advance flap. This will increase the success rate after closure of small-sized oronasal fistula surgery without complications or recurrence (IRB: 2020-1671-0001).
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- 2023
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30. Integration of visible light communication and internet of things for future communication
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Vijayalakshmi, B. Anitha, Seetha, J., Gandhimathi, P., and Bommi, R. M.
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- 2022
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31. Sewage pipe inspection robot for block detection and clearance
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Bommi, R. M., Ayyadurai, M., Vijayakumari, P., Salman, N., Kanithkar, and Babu, Roshith
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- 2022
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32. Effect of Electroporation on Transdermal lontophoretic Delivery of Luteinizing Hormone Releasing Hormone (LHRH) in Vitro
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Bommannan, D. Bommi, Tamada, Janet, Leung, Lewis, and Potts, Russell O.
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- 1994
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33. Validation of Reflectance Infrared Spectroscopy as a Quantitative Method to Measure Percutaneous Absorption In Vivo
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Higo, Naruhito, Naik, Aarti, Bommannan, D. Bommi, Potts, Russell O., and Guy, Richard H.
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- 1993
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34. An efficient multi-stage ensemble deep learning framework for diagnosing infectious diseases
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Bondugula, Rohit Kumar, Bommi, Nitin Sai, and Udgata, Siba K.
- Abstract
This study presents an efficient four-stage ensemble deep learning framework for diagnosing infectious diseases. The model is evaluated on three standard datasets. In our proposed four-stage transfer learning-based deep neural architecture (4s-min-FN), the images pass through four stages, each attempting to classify images as positive. A negative class is confirmed if every stage classifies the image as negative. This model (4S-min-FN) ensures the minimization of false negatives. When the new cases go through a changing scenario, the same model is modified (4S-min-FP) to minimize false positives following the same architecture but with a different transition rule. We use an adaptive threshold setting in the proposed architecture to find a proper trade-off between sensitivity, specificity, and good accuracy. We use well-known pre-trained deep neural architectures like Inception, ResNet-50, DenseNet-121, and MobileNet for the four-stage experimental evaluation and predicted the class, which provided better insights about the condition. The proposed model can perform at par with the existing techniques in terms of accuracy while reducing false positives and negatives depending on the requirement.
- Published
- 2024
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35. Age-stratified comorbid and pharmacologic analysis of patients with glioblastoma
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Rabin, Erik E., Huang, Jonathan, Kim, Miri, Mozny, Andreas, Lauing, Kristen L., Penco-Campillo, Manon, Zhai, Lijie, Bommi, Prashant, Mi, Xinlei, Power, Erica A., Prabhu, Vikram C., Anderson, Douglas E., Barton, Kevin P., Walunas, Theresa L., Schiltz, Gary E., Amidei, Christina, Sanchez-Gomez, Pilar, Thakkar, Jigisha P., Lukas, Rimas V., and Wainwright, Derek A.
- Abstract
Increased age is a strong and unfavorable prognostic factor for patients with glioblastoma (GBM). However, the relationships between stratified patient age, comorbidities, and medications have yet to be explored in GBM patient survival analyses.
- Published
- 2024
- Full Text
- View/download PDF
36. Assertion-Based Verification for the SpaceCAKE Multiprocessor - A Case Study.
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Ur, Shmuel, Bin, Eyal, Wolfsthal, Yaron, Kulkarni, Milind, and Bommi J., Benita
- Abstract
This paper presents a case study of the application of assertion-based verification to a multi-million-gate design of the SpaceCAKE architecture with shared L2 cache. SpaceCAKE L2 cache is highly configurable and implements Distributed Shared Memory (DSM) architecture. This paper discusses the issues faced during the functional verification of this architecture. A number of techniques are employed to verify the design. The paper serves as a case study for verification of such a complex architecture. A description of the different techniques that were used to verify this architecture and an assessment of using a comprehensive coverage-driven verification plan that exploits the benefits of the traditional simulation techniques through the use of assertions is presented. We have found that the tools, currently provided by the market, for assertion-based static verification approach need more maturity. A 50% reduction in debug time has been achieved through the use of assertions. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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37. Tissue‐specific genetically regulated expression in late‐onset Alzheimer's disease implicates risk genes within known and 30 novel loci: Genetics: Genetics and omics of AD II.
- Author
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Chen, Hung‐Hsin, Petty, Lauren, Lee, Bommi, Sha, Jin, Zhao, Yi, Gamazon, Eric, Bush, William S., Naj, Adam C., and Below, Jennifer
- Abstract
Background: Late‐Onset Alzheimer Disease (LOAD) is the most common neurodegenerative disease. Its heritability is estimated to be 40‐80%, yet the numerous genome‐wide studies (GWAS) conducted to date have identified risk variants that explain only ∼8% phenotypic variance. Method: To improve understanding of the functional genetic etiology of LOAD, we used 39 GWAS datasets including 58,713 cases and controls from the Alzheimer's Disease Genetics Consortium (ADGC) and the International Genomics of Alzheimer's Project (IGAP). For the 31 ADGC datasets, high quality variants were used to impute gene expression with PrediXcan, an approach that infers the genetically‐regulated portion of gene expression (GReX) from common expression quantitative trait loci. GReX was modeled using models from 50 different tissue types including 48 tissues from Genotype‐Tissue Expression Project, whole blood samples from the Depression Genes and Networks dataset, and dorsolateral prefrontal cortex samples from the CommonMind Consortium. Also, a multi‐tissues model was applied principal components analysis to extract the common expression pattern across all tissues. In addition, the summary GWAS statistics from the 8 IGAP studies were used to evaluate the GReX‐phenotype associations through S‐PrediXcan with the same 50 diverse tissue models. Result: Meta‐analysis across all studies identified 225 unique genes reaching Benjamini‐Hochberg (BH)‐corrected genome‐wide significance (BH‐adjusted p < 0.05) across all tissue‐specific models, including 26 with no previously‐reported GWAS associations with LOAD. Top hits included BLOC1S3 (p = 2.95 × 10−273), CD3EAP (p = 7.19 × 10−239), and RELB (p = 1.52 × 10−167). In a multi‐tissues model, 33 genes had significant effect, including BLOC1S3 (p = 1.21 × 10−64), APOC1 (p = 2.94 × 10−61), and CD3EAP (p = 1.10 × 10−56). Conditional analysis of previously reported loci using prior LOAD GWAS risk variants identified 8 genes reaching genome‐wide significance independent of known signals, including SLC39A13, SDHD, and MTCH2. Further independent validation of identified genes was performed in ∼23,000 individuals in a large, electronic health record‐linked DNA databank. In a phenome‐wide enrichment analysis with a million times permutation, our identified genes were enriched for associations with insomnia (p < 1 × 10−5) and degenerative disease of the spinal cord (p = 1 × 10−5). Conclusion: In conclusion, leveraging genotype‐based GReX in ∼60,000 individuals illustrates the utility of gene regulatory models in the discovery of new loci and function‐based fine mapping of known regions for LOAD and highlights other potential clinical consequences of disrupted regulation at LOAD‐associated genes. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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38. A systematic review of pharmacologic treatment efficacy for depression in older patients with cancer
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Rabin, Erik E., Kim, Miri, Mozny, Andreas, Cardoza, Krislyn, Bell, April C., Zhai, Lijie, Bommi, Prashant, Lauing, Kristen L., King, Amanda L., Armstrong, Terri S., Walunas, Theresa L., Fang, Deyu, Roy, Ishan, Peipert, John D., Sieg, Erica, Mi, Xinlei, Amidei, Christina, Lukas, Rimas V., and Wainwright, Derek A.
- Abstract
Older adults ≥65 years of age represent the majority of new cancer diagnoses and are vulnerable to developing depression-like symptoms. Evaluation and management of depression in older cancer patients is underappreciated despite its high prevalence and impact on health-related quality of life. Although antidepressants are the primary pharmacologics used to treat depressive-like symptoms, the efficacy and overall benefit(s) are not well-characterized in older adult patients with cancer. The objective of this investigation was to review what is known about the efficacy of pharmacologic treatment for older adults with depression and cancer.
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- 2022
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39. βTrCP regulates BMI1 protein turnover via ubiquitination and degradation
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Sahasrabuddhe, Anagh A., Dimri, Manjari, Bommi, Prashant V., and Dimri, Goberdhan P.
- Abstract
The polycomb group protein BMI1 has been linked to proliferation, senescence, cancer progression and stem cell phenotype. At present, very little is known about its regulation. Here, we report that BMI1 contains a functional recognition motif for the F box protein βTrCP, which regulates ubiquitination and proteasome-mediated degradation of various proteins. We show that overexpression of wild-type βTrCP but not the ΔF mutant of it promotes BMI1 ubiquitination and degradation, and knockdown of βTrCP results in increased expression of BMI1. Furthermore, a mutant of BMI1 with an altered βTrCP recognition motif is much more stable than wild-type BMI1. We also show that wild-type BMI1 but not the mutant BMI1 interacts with βTrCP. Accordingly, compared to wild-type BMI1, mutant protein exhibited increased pro-oncogenic activity. In summary, our findings suggest that βTrCP regulates turnover of BMI1 and its function relevant to oncogenesis, cellular senescence and aging.
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- 2011
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40. The polycomb group protein BMI1 is a transcriptional target of HDAC inhibitors
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Bommi, Prashant V., Dimri, Manjari, Sahasrabuddhe, Anagh A., Khandekar, Janardan, and Dimri, Goberdhan P.
- Abstract
Polycomb group (PcG) proteins are overexpressed in several human malignancies including breast cancer. In particular, aberrant expression of BMI1 and EZH2 has been linked to metastasis and poor prognosis in cancer patients. At present, very little is known about the pharmacological inhibitors of PcG proteins. Here we show that histone deacetylase inhibitors (HDACi) downregulate expression of BMI1. Treatment of MCF10A cells, which are immortal non-transformed breast epithelial cells, and breast cancer cells with HDACi led to decreased expression of BMI1. We further show that downregulation of BMI1 by HDACi results due to the transcriptional downregulation of BMI1gene. Specifically, we show that primary transcription and promoter activity of BMI1is suppressed upon treatment with HDACi. Furthermore, downregulation of BMI1 was accompanied by a decrease in histone 2A lysine 119 ubiquitination (H2AK119Ub), which is catalyzed by BMI1 containing polycomb repressive complex 1. HDACi treatment also led to derepression of growth inhibitory genes and putative tumor suppressors, which are known to be silenced by PcG proteins and polycomb repressive complexes (PRCs). In summary, our findings suggest that BMI1 is an important therapy target of HDACi, and that HDACi can be used alone or in combination with other therapies to inhibit growth of tumors that overexpress PcG proteins such as BMI1.
- Published
- 2010
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41. Hypoxic preconditioning protects against ischemic kidney injury through the IDO1/kynurenine pathway
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Torosyan, Rafael, Huang, Shengping, Bommi, Prashant V., Tiwari, Ratnakar, An, Si Young, Schonfeld, Michael, Rajendran, Ganeshkumar, Kavanaugh, Matthew A., Gibbs, Benjamin, Truax, Agnieszka D., Bohney, Samuel, Calcutt, M. Wade, Kerr, Evan W., Leonardi, Roberta, Gao, Peng, Chandel, Navdeep S., and Kapitsinou, Pinelopi P.
- Abstract
Prolonged cellular hypoxia leads to energetic failure and death. However, sublethal hypoxia can trigger an adaptive response called hypoxic preconditioning. While prolyl-hydroxylase (PHD) enzymes and hypoxia-inducible factors (HIFs) have been identified as key elements of oxygen-sensing machinery, the mechanisms by which hypoxic preconditioning protects against insults remain unclear. Here, we perform serum metabolomic profiling to assess alterations induced by two potent cytoprotective approaches, hypoxic preconditioning and pharmacologic PHD inhibition. We discover that both approaches increase serum kynurenine levels and enhance kynurenine biotransformation, leading to preservation of NAD+in the post-ischemic kidney. Furthermore, we show that indoleamine 2,3-dioxygenase 1 (Ido1) deficiency abolishes the systemic increase of kynurenine and the subsequent renoprotection generated by hypoxic preconditioning and PHD inhibition. Importantly, exogenous administration of kynurenine restores the hypoxic preconditioning in the context of Ido1deficiency. Collectively, our findings demonstrate a critical role of the IDO1-kynurenine axis in mediating hypoxic preconditioning.
- Published
- 2021
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42. The polycomb group protein BMI1 is a transcriptional target of HDAC inhibitors
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Bommi, P. V., Dimri, M., Anagh Sahasrabuddhe, Khandekar, J. D., and Dimri, G. P.
43. A systematic review of pharmacologic treatment efficacy for depression in older patients with cancer
- Author
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Erik E. Rabin, Miri Kim, Andreas Mozny, Krislyn Cardoza, April C. Bell, Lijie Zhai, Prashant Bommi, Kristen L. Lauing, Amanda L. King, Terri S. Armstrong, Theresa L. Walunas, Deyu Fang, Ishan Roy, John D. Peipert, Erica Sieg, Xinlei Mi, Christina Amidei, Rimas V. Lukas, and Derek A. Wainwright
- Subjects
Aging ,Elderly ,SSRI ,Senescence ,Neuroinflammation ,Glioblastoma ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: Older adults ≥65 years of age represent the majority of new cancer diagnoses and are vulnerable to developing depression-like symptoms. Evaluation and management of depression in older cancer patients is underappreciated despite its high prevalence and impact on health-related quality of life. Although antidepressants are the primary pharmacologics used to treat depressive-like symptoms, the efficacy and overall benefit(s) are not well-characterized in older adult patients with cancer. The objective of this investigation was to review what is known about the efficacy of pharmacologic treatment for older adults with depression and cancer. Methods: PubMed (Medline) and EMBASE (Elsevier) databases were analyzed for relevant literature in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Results: 1,919 unique studies were identified for title and abstract screening. Forty-eight publications were retrieved for full review. None of the identified studies evaluated the potential for benefit after pharmacological treatment among older adults with cancer and depression. Twenty-seven publications met all study criteria except for an analysis focused on older patients. Conclusion: We discovered a universal absence of literature with a relevance to pharmacologic antidepressant treatment effects in older adult patients with cancer. This included a lack of evaluation in patients with brain tumors who have an unusually high predilection for developing depression. Our findings suggest that new research is critically needed for understanding optimal clinical management strategies in older adults with cancer and depression who are treated with antidepressants.
- Published
- 2022
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44. Correction: Bromodomain inhibition of the transcriptional coactivators CBP/EP300 as a therapeutic strategy to target the IRF4 network in multiple myeloma
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Andrew R Conery, Richard C Centore, Adrianne Neiss, Patricia J Keller, Shivangi Joshi, Kerry L Spillane, Peter Sandy, Charlie Hatton, Eneida Pardo, Laura Zawadzke, Archana Bommi-Reddy, Karen E Gascoigne, Barbara M Bryant, Jennifer A Mertz, and Robert J Sims III
- Subjects
Medicine ,Science ,Biology (General) ,QH301-705.5 - Published
- 2016
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45. Bromodomain inhibition of the transcriptional coactivators CBP/EP300 as a therapeutic strategy to target the IRF4 network in multiple myeloma
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Andrew R Conery, Richard C Centore, Adrianne Neiss, Patricia J Keller, Shivangi Joshi, Kerry L Spillane, Peter Sandy, Charlie Hatton, Eneida Pardo, Laura Zawadzke, Archana Bommi-Reddy, Karen E Gascoigne, Barbara M Bryant, Jennifer A Mertz, and Robert J Sims III
- Subjects
CBP ,EP300 ,bromodomain ,IRF4 ,MYC ,myeloma ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Pharmacological inhibition of chromatin co-regulatory factors represents a clinically validated strategy to modulate oncogenic signaling through selective attenuation of gene expression. Here, we demonstrate that CBP/EP300 bromodomain inhibition preferentially abrogates the viability of multiple myeloma cell lines. Selective targeting of multiple myeloma cell lines through CBP/EP300 bromodomain inhibition is the result of direct transcriptional suppression of the lymphocyte-specific transcription factor IRF4, which is essential for the viability of myeloma cells, and the concomitant repression of the IRF4 target gene c-MYC. Ectopic expression of either IRF4 or MYC antagonizes the phenotypic and transcriptional effects of CBP/EP300 bromodomain inhibition, highlighting the IRF4/MYC axis as a key component of its mechanism of action. These findings suggest that CBP/EP300 bromodomain inhibition represents a viable therapeutic strategy for targeting multiple myeloma and other lymphoid malignancies dependent on the IRF4 network.
- Published
- 2016
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- View/download PDF
46. Advanced Age in Humans and Mouse Models of Glioblastoma Show Decreased Survival from Extratumoral Influence.
- Author
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Johnson M, Bell A, Lauing KL, Ladomersky E, Zhai L, Penco-Campillo M, Shah Y, Mauer E, Xiu J, Nicolaides T, Drumm M, McCortney K, Elemento O, Kim M, Bommi P, Low JT, Memon R, Wu J, Zhao J, Mi X, Glantz MJ, Sengupta S, Castro B, Yamini B, Horbinski C, Baker DJ, Walunas TL, Schiltz GE, Lukas RV, and Wainwright DA
- Subjects
- Humans, Animals, Mice, Aged, Senotherapeutics, Mutation, DNA Methylation, Glioblastoma drug therapy, Glioblastoma genetics, Glioblastoma metabolism, Brain Neoplasms drug therapy, Brain Neoplasms genetics, Brain Neoplasms metabolism
- Abstract
Purpose: Glioblastoma (GBM) is the most common aggressive primary malignant brain tumor in adults with a median age of onset of 68 to 70 years old. Although advanced age is often associated with poorer GBM patient survival, the predominant source(s) of maladaptive aging effects remains to be established. Here, we studied intratumoral and extratumoral relationships between adult patients with GBM and mice with brain tumors across the lifespan., Experimental Design: Electronic health records at Northwestern Medicine and the NCI SEER databases were evaluated for GBM patient age and overall survival. The commercial Tempus and Caris databases, as well as The Cancer Genome Atlas were profiled for gene expression, DNA methylation, and mutational changes with varying GBM patient age. In addition, gene expression analysis was performed on the extratumoral brain of younger and older adult mice with or without a brain tumor. The survival of young and old wild-type or transgenic (INK-ATTAC) mice with a brain tumor was evaluated after treatment with or without senolytics and/or immunotherapy., Results: Human patients with GBM ≥65 years of age had a significantly decreased survival compared with their younger counterparts. While the intra-GBM molecular profiles were similar between younger and older patients with GBM, non-tumor brain tissue had a significantly different gene expression profile between young and old mice with a brain tumor and the eradication of senescent cells improved immunotherapy-dependent survival of old but not young mice., Conclusions: This work suggests a potential benefit for combining senolytics with immunotherapy in older patients with GBM., (©2023 The Authors; Published by the American Association for Cancer Research.)
- Published
- 2023
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47. Bmi1 functions as an oncogene independent of Ink4A/Arf repression in hepatic carcinogenesis.
- Author
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Xu CR, Lee S, Ho C, Bommi P, Huang SA, Cheung ST, Dimri GP, and Chen X
- Subjects
- Animals, Carcinoma, Hepatocellular genetics, Carcinoma, Hepatocellular pathology, Cell Cycle, Cell Line, Tumor, Cell Proliferation, Cyclin-Dependent Kinase Inhibitor p16 genetics, Cyclin-Dependent Kinase Inhibitor p16 metabolism, Down-Regulation genetics, Enzyme Activation, Gene Expression Regulation, Neoplastic, Gene Knockdown Techniques, Hepatocytes metabolism, Humans, Liver Neoplasms genetics, Liver Neoplasms pathology, Mice, Nuclear Proteins genetics, Polycomb Repressive Complex 1, Proto-Oncogene Mas, Proto-Oncogene Proteins genetics, RNA, Small Interfering metabolism, Repressor Proteins genetics, Tumor Suppressor Protein p14ARF genetics, Tumor Suppressor Protein p14ARF metabolism, Up-Regulation genetics, ras Proteins metabolism, Carcinoma, Hepatocellular metabolism, Liver Neoplasms metabolism, Nuclear Proteins metabolism, Proto-Oncogene Proteins metabolism, Repressor Proteins metabolism
- Abstract
Bmi1 is a polycomb group proto-oncogene that has been implicated in multiple tumor types. However, its role in hepatocellular carcinoma (HCC) development has not been well studied. In this article, we report that Bmi1 is overexpressed in human HCC samples. When Bmi1 expression is knocked down in human HCC cell lines, it significantly inhibits cell proliferation and perturbs cell cycle regulation. To investigate the role of Bmi1 in promoting liver cancer development in vivo, we stably expressed Bmi1 and/or an activated form of Ras (RasV12) in mouse liver. We found that while Bmi1 or RasV12 alone is not sufficient to promote liver cancer development, coexpression of Bmi1 and RasV12 promotes HCC formation in mice. Tumors induced by Bmi1/RasV12 resemble human HCC by deregulation of genes involved in cell proliferation, apoptosis, and angiogenesis. Intriguingly, we found no evidence that Bmi1 regulates Ink4A/Arf expression in both in vitro and in vivo systems of liver tumor development. In summary, our study shows that Bmi1 can cooperate with other oncogenic signals to promote hepatic carcinogenesis in vivo. Yet Bmi1 functions independent of Ink4A/Arf repression in liver cancer development.
- Published
- 2009
- Full Text
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48. Bmi-1 cooperates with H-Ras to transform human mammary epithelial cells via dysregulation of multiple growth-regulatory pathways.
- Author
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Datta S, Hoenerhoff MJ, Bommi P, Sainger R, Guo WJ, Dimri M, Band H, Band V, Green JE, and Dimri GP
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- Animals, Breast Neoplasms pathology, Cell Line, Cell Proliferation, Cyclin-Dependent Kinase 4 genetics, Cyclin-Dependent Kinase Inhibitor p16 physiology, DNA Damage, Extracellular Signal-Regulated MAP Kinases physiology, Female, Genes, bcl-1, Humans, Intracellular Signaling Peptides and Proteins physiology, Ki-67 Antigen analysis, Mice, Mice, SCID, Phosphorylation, Platelet Endothelial Cell Adhesion Molecule-1 analysis, Polycomb Repressive Complex 1, Protein Serine-Threonine Kinases physiology, Proto-Oncogene Proteins c-akt physiology, Tumor Suppressor Protein p53 metabolism, Breast Neoplasms etiology, Cell Transformation, Neoplastic, Genes, ras, Nuclear Proteins physiology, Proto-Oncogene Proteins physiology, Repressor Proteins physiology
- Abstract
Elevated expression of Bmi-1 is associated with many cancers, including breast cancer. Here, we examined the oncogenic potential of Bmi-1 in MCF10A cells, a spontaneously immortalized, nontransformed strain of human mammary epithelial cells (HMEC). Bmi-1 overexpression alone in MCF10A cells did not result in oncogenic transformation. However, Bmi-1 co-overexpression with activated H-Ras (RasG12V) resulted in efficient transformation of MCF10A cells in vitro. Although early-passage H-Ras-expressing MCF10A cells were not transformed, late-passage H-Ras-expressing cells exhibited features of transformation in vitro. Early- and late-passage H-Ras-expressing cells also differed in levels of expression of H-Ras and Ki-67, a marker of proliferation. Subsets of early-passage H-Ras-expressing cells exhibited high Ras expression and were negative for Ki-67, whereas most late-passage H-Ras-expressing cells expressed low levels of Ras and were Ki-67 positive. Injection of late-passage H-Ras-expressing cells in severe combined immunodeficient mice formed carcinomas with leiomatous, hemangiomatous, and mast cell components; these tumors were quite distinct from those induced by late-passage cells co-overexpressing Bmi-1 and H-Ras, which formed poorly differentiated carcinomas with spindle cell features. Bmi-1 and H-Ras co-overexpression in MCF10A cells also induced features of epithelial-to-mesenchymal transition. Importantly, Bmi-1 inhibited senescence and permitted proliferation of cells expressing high levels of Ras. Examination of various growth-regulatory pathways suggested that Bmi-1 overexpression together with H-Ras promotes HMEC transformation and breast oncogenesis by deregulation of multiple growth-regulatory pathways by p16(INK4a)-independent mechanisms.
- Published
- 2007
- Full Text
- View/download PDF
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