706 results on '"Bohrer, Gil"'
Search Results
2. Causality guided machine learning model on wetland CH4 emissions across global wetlands
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Yuan, Kunxiaojia, Zhu, Qing, Li, Fa, Riley, William J, Torn, Margaret, Chu, Housen, McNicol, Gavin, Chen, Min, Knox, Sara, Delwiche, Kyle, Wu, Huayi, Baldocchi, Dennis, Ma, Hongxu, Desai, Ankur R, Chen, Jiquan, Sachs, Torsten, Ueyama, Masahito, Sonnentag, Oliver, Helbig, Manuel, Tuittila, Eeva-Stiina, Jurasinski, Gerald, Koebsch, Franziska, Campbell, David, Schmid, Hans Peter, Lohila, Annalea, Goeckede, Mathias, Nilsson, Mats B, Friborg, Thomas, Jansen, Joachim, Zona, Donatella, Euskirchen, Eugenie, Ward, Eric J, Bohrer, Gil, Jin, Zhenong, Liu, Licheng, Iwata, Hiroki, Goodrich, Jordan, and Jackson, Robert
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Earth Sciences ,Machine Learning and Artificial Intelligence ,Climate Action ,Eddy covariance CH4 emission ,Wetlands ,Causal inference ,Machine learning ,Biological Sciences ,Agricultural and Veterinary Sciences ,Meteorology & Atmospheric Sciences ,Agricultural ,veterinary and food sciences ,Biological sciences ,Earth sciences - Abstract
Wetland CH₄ emissions are among the most uncertain components of the global CH₄ budget. The complex nature of wetland CH₄ processes makes it challenging to identify causal relationships for improving our understanding and predictability of CH₄ emissions. In this study, we used the flux measurements of CH₄ from eddy covariance towers (30 sites from 4 wetlands types: bog, fen, marsh, and wet tundra) to construct a causality-constrained machine learning (ML) framework to explain the regulative factors and to capture CH₄ emissions at sub-seasonal scale. We found that soil temperature is the dominant factor for CH₄ emissions in all studied wetland types. Ecosystem respiration (CO₂) and gross primary productivity exert controls at bog, fen, and marsh sites with lagged responses of days to weeks. Integrating these asynchronous environmental and biological causal relationships in predictive models significantly improved model performance. More importantly, modeled CH₄ emissions differed by up to a factor of 4 under a +1°C warming scenario when causality constraints were considered. These results highlight the significant role of causality in modeling wetland CH₄ emissions especially under future warming conditions, while traditional data-driven ML models may reproduce observations for the wrong reasons. Our proposed causality-guided model could benefit predictive modeling, large-scale upscaling, data gap-filling, and surrogate modeling of wetland CH₄ emissions within earth system land models.
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- 2022
3. Bayesian Optimization for Anything (BOA): An open-source framework for accessible, user-friendly Bayesian optimization
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Scyphers, Madeline E., Missik, Justine E.C., Kujawa, Haley, Paulson, Joel A., and Bohrer, Gil
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- 2024
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4. Water level changes in Lake Erie drive 21st century CO2 and CH4 fluxes from a coastal temperate wetland
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Morin, Timothy H, Riley, William J, Grant, Robert F, Mekonnen, Zelalem, Stefanik, Kay C, Sanchez, A Camilo Rey, Mulhare, Molly A, Villa, Jorge, Wrighton, Kelly, and Bohrer, Gil
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Environmental Sciences ,Biological Sciences ,Ecology ,Climate Action ,Carbon Dioxide ,Greenhouse Gases ,Humans ,Lakes ,Methane ,Water ,Wetlands ,Lake Erie ,Projection ,Mechanistic model ,Eddy covariance - Abstract
Wetland water depth influences microbial and plant communities, which can alter the above- and below-ground carbon cycling of a wetland. Wetland water depths are likely to change due to shifting precipitation patterns, which will affect projections of greenhouse gas emissions; however, these effects are rarely incorporated into wetland greenhouse gas models. Seeking to address this gap, we used a mechanistic model, ecosys, to simulate a range of water depth scenarios in a temperate wetland, and analyzed simulated predictions of carbon dioxide (CO2) and methane (CH4) fluxes over the 21st century. We tested our model using eddy covariance measurements of CO2 and CH4 fluxes collected at the Old Woman Creek National Estuarine Research Reserve (OWC) during 2015 and 2016. OWC is a lacustrine, estuarine, freshwater, mineral-soil marsh. An empirical model found that the wetland water depth is highly dependent on the water depth of the nearby Lake Erie. Future wetland surface water depths were modeled based on projection of Lake Erie's water depth using four separate NOAA projections, resulting in four wetland water-depth scenarios. Two of the four 21st century projections for Lake Erie water depths used in this study indicated that the water depth of the wetland would remain nearly steady; however, the other two indicated decreases in the wetland water depth. In our scenario where the wetland dries out, we project the wetland's climatological warming effect will decrease due to smaller CH4 fluxes to the atmosphere and larger CO2 uptake by the wetland. We also found that increased water level can lower emissions by shifting the site towards more open water areas, which have lower CH4 emissions. We found that decreased water depths would cause more widespread colonization of the wetland by macrophyte vegetation. Using an empirical relationship, we also found that further drying could result in other, non-wetland vegetation to emerge, dramatically altering soil carbon cycling. In three of our four projections, we found that in general the magnitude of CO2 and CH4 fluxes steadily increase over the next 100 years in response to higher temperatures. However, in our driest simulations, we projected a different response due to increased oxidation of soil carbon, with CH4 emissions decreasing substantially from an annual cumulative peak of 224.6 to a minimum of 104.7 gC m-2 year-1. In that same simulation, net cumulative flux of CO2 changed from being a sink of 56.5 gC m-2 year-1 to a source of 369.6 gC m-2 year-1 over the same period, despite a temperature increase from 13.7 °C to 14.2 °C. This temperature shift in our other three cases with greater water depths increased the source strength of CH4 and the sink strength of CO2. We conclude that the magnitude of wetland greenhouse-gas fluxes depended on the water depth primarily as it affected the areal percentage of the wetland available for plant colonization, but dramatic decreases in water depths could cause significant reductions in the wetland CH4 fluxes, while simultaneously altering the wetland vegetation.
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- 2022
5. Forest carbon uptake as influenced by snowpack and length of photosynthesis season in seasonally snow-covered forests of North America
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Yang, Julia C., Bowling, David R., Smith, Kenneth R., Kunik, Lewis, Raczka, Brett, Anderegg, William R.L., Bahn, Michael, Blanken, Peter D., Richardson, Andrew D., Burns, Sean P., Bohrer, Gil, Desai, Ankur R., Arain, M. Altaf, Staebler, Ralf M., Ouimette, Andrew P., Munger, J. William, and Litvak, Marcy E.
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- 2024
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6. On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types
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Richardson, Jessica L., Desai, Ankur R., Thom, Jonathan, Lindgren, Kim, Laudon, Hjalmar, Peichl, Matthias, Nilsson, Mats, Campeau, Audrey, Järveoja, Järvi, Hawman, Peter, Mishra, Deepak R., Smith, Dontrece, D’Acunha, Brenda, Knox, Sara H., Ng, Darian, Johnson, Mark S., Blackstock, Joshua, Malone, Sparkle L., Oberbauer, Steve F., Detto, Matteo, Wickland, Kimberly P., Forbrich, Inke, Weston, Nathaniel, Hung, Jacqueline K. Y., Edgar, Colin, Euskirchen, Eugenie S., Bret-Harte, Syndonia, Dobkowski, Jason, Kling, George, Kane, Evan S., Badiou, Pascal, Bogard, Matthew, Bohrer, Gil, O’Halloran, Thomas, Ritson, Jonny, Arias-Ortiz, Ariane, Baldocchi, Dennis, Oikawa, Patty, Shahan, Julie, and Matsumura, Maiyah
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- 2024
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7. Coupling plant litter quantity to a novel metric for litter quality explains C storage changes in a thawing permafrost peatland
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Hough, Moira, McCabe, Samantha, Vining, S Rose, Pedersen, Emily Pickering, Wilson, Rachel M, Lawrence, Ryan, Chang, Kuang‐Yu, Bohrer, Gil, Frolking, Steve, Hodgkins, Suzanne B, McCalley, Carmody K, Cooper, William T, Chanton, Jeffrey P, Sullivan, Matthew B, Tyson, Gene W, Brodie, Eoin L, Woodcroft, Ben J, Dominguez, Sky, Riley, William J, Crill, Patrick M, Varner, Ruth K, Blazewicz, Steven J, Dorrepaal, Ellen, Tfaily, Malak M, Saleska, Scott R, and Rich, Virginia I
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Biological Sciences ,Climate Action ,Arctic Regions ,Carbon Dioxide ,Ecosystem ,Permafrost ,Plants ,Soil ,C storage ,decomposition ,litter chemistry ,NOSC ,peat ,permafrost thaw ,plant community change ,Stordalen Mire ,IsoGenie Coordinators ,Environmental Sciences ,Ecology ,Biological sciences ,Earth sciences ,Environmental sciences - Abstract
Permafrost thaw is a major potential feedback source to climate change as it can drive the increased release of greenhouse gases carbon dioxide (CO2 ) and methane (CH4 ). This carbon release from the decomposition of thawing soil organic material can be mitigated by increased net primary productivity (NPP) caused by warming, increasing atmospheric CO2 , and plant community transition. However, the net effect on C storage also depends on how these plant community changes alter plant litter quantity, quality, and decomposition rates. Predicting decomposition rates based on litter quality remains challenging, but a promising new way forward is to incorporate measures of the energetic favorability to soil microbes of plant biomass decomposition. We asked how the variation in one such measure, the nominal oxidation state of carbon (NOSC), interacts with changing quantities of plant material inputs to influence the net C balance of a thawing permafrost peatland. We found: (1) Plant productivity (NPP) increased post-thaw, but instead of contributing to increased standing biomass, it increased plant biomass turnover via increased litter inputs to soil; (2) Plant litter thermodynamic favorability (NOSC) and decomposition rate both increased post-thaw, despite limited changes in bulk C:N ratios; (3) these increases caused the higher NPP to cycle more rapidly through both plants and soil, contributing to higher CO2 and CH4 fluxes from decomposition. Thus, the increased C-storage expected from higher productivity was limited and the high global warming potential of CH4 contributed a net positive warming effect. Although post-thaw peatlands are currently C sinks due to high NPP offsetting high CO2 release, this status is very sensitive to the plant community's litter input rate and quality. Integration of novel bioavailability metrics based on litter chemistry, including NOSC, into studies of ecosystem dynamics, is needed to improve the understanding of controls on arctic C stocks under continued ecosystem transition.
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- 2022
8. Changes in inundation drive carbon dioxide and methane fluxes in a temperate wetland
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Hassett, Erin, Bohrer, Gil, Kinsman-Costello, Lauren, Onyango, Yvette, Pope, Talia, Smith, Chelsea, Missik, Justine, Eberhard, Erin, Villa, Jorge, McMurray, Steven E., and Morin, Tim
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- 2024
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9. Gap-filling eddy covariance methane fluxes: Comparison of machine learning model predictions and uncertainties at FLUXNET-CH4 wetlands
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Irvin, Jeremy, Zhou, Sharon, McNicol, Gavin, Lu, Fred, Liu, Vincent, Fluet-Chouinard, Etienne, Ouyang, Zutao, Knox, Sara Helen, Lucas-Moffat, Antje, Trotta, Carlo, Papale, Dario, Vitale, Domenico, Mammarella, Ivan, Alekseychik, Pavel, Aurela, Mika, Avati, Anand, Baldocchi, Dennis, Bansal, Sheel, Bohrer, Gil, Campbell, David I, Chen, Jiquan, Chu, Housen, Dalmagro, Higo J, Delwiche, Kyle B, Desai, Ankur R, Euskirchen, Eugenie, Feron, Sarah, Goeckede, Mathias, Heimann, Martin, Helbig, Manuel, Helfter, Carole, Hemes, Kyle S, Hirano, Takashi, Iwata, Hiroki, Jurasinski, Gerald, Kalhori, Aram, Kondrich, Andrew, Lai, Derrick YF, Lohila, Annalea, Malhotra, Avni, Merbold, Lutz, Mitra, Bhaskar, Ng, Andrew, Nilsson, Mats B, Noormets, Asko, Peichl, Matthias, Rey-Sanchez, A Camilo, Richardson, Andrew D, Runkle, Benjamin RK, Schäfer, Karina VR, Sonnentag, Oliver, Stuart-Haëntjens, Ellen, Sturtevant, Cove, Ueyama, Masahito, Valach, Alex C, Vargas, Rodrigo, Vourlitis, George L, Ward, Eric J, Wong, Guan Xhuan, Zona, Donatella, Alberto, Ma Carmelita R, Billesbach, David P, Celis, Gerardo, Dolman, Han, Friborg, Thomas, Fuchs, Kathrin, Gogo, Sébastien, Gondwe, Mangaliso J, Goodrich, Jordan P, Gottschalk, Pia, Hörtnagl, Lukas, Jacotot, Adrien, Koebsch, Franziska, Kasak, Kuno, Maier, Regine, Morin, Timothy H, Nemitz, Eiko, Oechel, Walter C, Oikawa, Patricia Y, Ono, Keisuke, Sachs, Torsten, Sakabe, Ayaka, Schuur, Edward A, Shortt, Robert, Sullivan, Ryan C, Szutu, Daphne J, Tuittila, Eeva-Stiina, Varlagin, Andrej, Verfaillie, Joeseph G, Wille, Christian, Windham-Myers, Lisamarie, Poulter, Benjamin, and Jackson, Robert B
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Earth Sciences ,Agricultural ,Veterinary and Food Sciences ,Biological Sciences ,Bioengineering ,Networking and Information Technology R&D (NITRD) ,Machine Learning and Artificial Intelligence ,Machine learning ,time series ,imputation ,gap-filling ,methane ,flux ,wetlands ,Agricultural and Veterinary Sciences ,Meteorology & Atmospheric Sciences ,Agricultural ,veterinary and food sciences ,Biological sciences ,Earth sciences - Abstract
Time series of wetland methane fluxes measured by eddy covariance require gap-filling to estimate daily, seasonal, and annual emissions. Gap-filling methane fluxes is challenging because of high variability and complex responses to multiple drivers. To date, there is no widely established gap-filling standard for wetland methane fluxes, with regards both to the best model algorithms and predictors. This study synthesizes results of different gap-filling methods systematically applied at 17 wetland sites spanning boreal to tropical regions and including all major wetland classes and two rice paddies. Procedures are proposed for: 1) creating realistic artificial gap scenarios, 2) training and evaluating gap-filling models without overstating performance, and 3) predicting half-hourly methane fluxes and annual emissions with realistic uncertainty estimates. Performance is compared between a conventional method (marginal distribution sampling) and four machine learning algorithms. The conventional method achieved similar median performance as the machine learning models but was worse than the best machine learning models and relatively insensitive to predictor choices. Of the machine learning models, decision tree algorithms performed the best in cross-validation experiments, even with a baseline predictor set, and artificial neural networks showed comparable performance when using all predictors. Soil temperature was frequently the most important predictor whilst water table depth was important at sites with substantial water table fluctuations, highlighting the value of data on wetland soil conditions. Raw gap-filling uncertainties from the machine learning models were underestimated and we propose a method to calibrate uncertainties to observations. The python code for model development, evaluation, and uncertainty estimation is publicly available. This study outlines a modular and robust machine learning workflow and makes recommendations for, and evaluates an improved baseline of, methane gap-filling models that can be implemented in multi-site syntheses or standardized products from regional and global flux networks (e.g., FLUXNET).
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- 2021
10. Identifying dominant environmental predictors of freshwater wetland methane fluxes across diurnal to seasonal time scales
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Knox, Sara H, Bansal, Sheel, McNicol, Gavin, Schafer, Karina, Sturtevant, Cove, Ueyama, Masahito, Valach, Alex C, Baldocchi, Dennis, Delwiche, Kyle, Desai, Ankur R, Euskirchen, Eugenie, Liu, Jinxun, Lohila, Annalea, Malhotra, Avni, Melling, Lulie, Riley, William, Runkle, Benjamin RK, Turner, Jessica, Vargas, Rodrigo, Zhu, Qing, Alto, Tuula, Fluet‐Chouinard, Etienne, Goeckede, Mathias, Melton, Joe R, Sonnentag, Oliver, Vesala, Timo, Ward, Eric, Zhang, Zhen, Feron, Sarah, Ouyang, Zutao, Alekseychik, Pavel, Aurela, Mika, Bohrer, Gil, Campbell, David I, Chen, Jiquan, Chu, Housen, Dalmagro, Higo J, Goodrich, Jordan P, Gottschalk, Pia, Hirano, Takashi, Iwata, Hiroki, Jurasinski, Gerald, Kang, Minseok, Koebsch, Franziska, Mammarella, Ivan, Nilsson, Mats B, Ono, Keisuke, Peichl, Matthias, Peltola, Olli, Ryu, Youngryel, Sachs, Torsten, Sakabe, Ayaka, Sparks, Jed P, Tuittila, Eeva‐Stiina, Vourlitis, George L, Wong, Guan X, Windham‐Myers, Lisamarie, Poulter, Benjamin, and Jackson, Robert B
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Earth Sciences ,Climate Change Impacts and Adaptation ,Environmental Sciences ,Carbon Dioxide ,Ecosystem ,Fresh Water ,Methane ,Seasons ,Wetlands ,eddy covariance ,generalized additive modeling ,lags ,methane ,mutual information ,predictors ,random forest ,synthesis ,time scales ,wetlands ,Biological Sciences ,Ecology ,Biological sciences ,Earth sciences ,Environmental sciences - Abstract
While wetlands are the largest natural source of methane (CH4 ) to the atmosphere, they represent a large source of uncertainty in the global CH4 budget due to the complex biogeochemical controls on CH4 dynamics. Here we present, to our knowledge, the first multi-site synthesis of how predictors of CH4 fluxes (FCH4) in freshwater wetlands vary across wetland types at diel, multiday (synoptic), and seasonal time scales. We used several statistical approaches (correlation analysis, generalized additive modeling, mutual information, and random forests) in a wavelet-based multi-resolution framework to assess the importance of environmental predictors, nonlinearities and lags on FCH4 across 23 eddy covariance sites. Seasonally, soil and air temperature were dominant predictors of FCH4 at sites with smaller seasonal variation in water table depth (WTD). In contrast, WTD was the dominant predictor for wetlands with smaller variations in temperature (e.g., seasonal tropical/subtropical wetlands). Changes in seasonal FCH4 lagged fluctuations in WTD by ~17 ± 11 days, and lagged air and soil temperature by median values of 8 ± 16 and 5 ± 15 days, respectively. Temperature and WTD were also dominant predictors at the multiday scale. Atmospheric pressure (PA) was another important multiday scale predictor for peat-dominated sites, with drops in PA coinciding with synchronous releases of CH4 . At the diel scale, synchronous relationships with latent heat flux and vapor pressure deficit suggest that physical processes controlling evaporation and boundary layer mixing exert similar controls on CH4 volatilization, and suggest the influence of pressurized ventilation in aerenchymatous vegetation. In addition, 1- to 4-h lagged relationships with ecosystem photosynthesis indicate recent carbon substrates, such as root exudates, may also control FCH4. By addressing issues of scale, asynchrony, and nonlinearity, this work improves understanding of the predictors and timing of wetland FCH4 that can inform future studies and models, and help constrain wetland CH4 emissions.
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- 2021
11. A Digital Ecosystem for Animal Movement Science: Making animal movement datasets, data-linkage techniques, methods, and environmental layers easier to find, interpret, and analyze
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Hoover, Brendan, Bohrer, Gil, Merkle, Jerod, and Miller, Jennifer A.
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Computer Science - Digital Libraries ,Computer Science - Information Retrieval ,Quantitative Biology - Quantitative Methods - Abstract
Movement is a fundamental aspect of animal life and plays a crucial role in determining the structure of population dynamics, communities, ecosystems, and diversity. In recent years, the recording of animal movements via GPS collars, camera traps, acoustic sensors, and citizen science, along with the abundance of environmental and other ancillary data used by researchers to contextualize those movements, has reached a level of volume, velocity, and variety that puts movement ecology research in the realm of big data science. That data growth has spawned increasingly complex methods for movement analysis. Consequently, animal ecologists need a greater understanding of technical skills such as statistics, geographic information systems (GIS), remote sensing, and coding. Therefore, collaboration has become increasingly crucial, as research requires both domain knowledge and technical expertise. Datasets of animal movement and environmental data are typically available in repositories run by government agencies, universities, and non-governmental organizations (NGOs) with methods described in scientific journals. However, there is little connectivity between these entities. The construction of a digital ecosystem for animal movement science is critically important right now. The digital ecosystem represents a setting where movement data, environmental layers, and analysis methods are discoverable and available for efficient storage, manipulation, and analysis. We argue that such a system which will help mature the field of movement ecology by engendering collaboration, facilitating replication, expanding the spatiotemporal range of potential analyses, and limiting redundancy in method development. We describe the key components of the digital ecosystem, the critical challenges that would need addressing, as well as potential solutions to those challenges., Comment: Permission was not granted by the authors
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- 2020
12. Representativeness of Eddy-Covariance flux footprints for areas surrounding AmeriFlux sites
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Chu, Housen, Luo, Xiangzhong, Ouyang, Zutao, Chan, W Stephen, Dengel, Sigrid, Biraud, Sébastien C, Torn, Margaret S, Metzger, Stefan, Kumar, Jitendra, Arain, M Altaf, Arkebauer, Tim J, Baldocchi, Dennis, Bernacchi, Carl, Billesbach, Dave, Black, T Andrew, Blanken, Peter D, Bohrer, Gil, Bracho, Rosvel, Brown, Shannon, Brunsell, Nathaniel A, Chen, Jiquan, Chen, Xingyuan, Clark, Kenneth, Desai, Ankur R, Duman, Tomer, Durden, David, Fares, Silvano, Forbrich, Inke, Gamon, John A, Gough, Christopher M, Griffis, Timothy, Helbig, Manuel, Hollinger, David, Humphreys, Elyn, Ikawa, Hiroki, Iwata, Hiroki, Ju, Yang, Knowles, John F, Knox, Sara H, Kobayashi, Hideki, Kolb, Thomas, Law, Beverly, Lee, Xuhui, Litvak, Marcy, Liu, Heping, Munger, J William, Noormets, Asko, Novick, Kim, Oberbauer, Steven F, Oechel, Walter, Oikawa, Patty, Papuga, Shirley A, Pendall, Elise, Prajapati, Prajaya, Prueger, John, Quinton, William L, Richardson, Andrew D, Russell, Eric S, Scott, Russell L, Starr, Gregory, Staebler, Ralf, Stoy, Paul C, Stuart-Haëntjens, Ellen, Sonnentag, Oliver, Sullivan, Ryan C, Suyker, Andy, Ueyama, Masahito, Vargas, Rodrigo, Wood, Jeffrey D, and Zona, Donatella
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Earth Sciences ,Flux footprint ,Spatial representativeness ,Landsat EVI ,Land cover ,Sensor location bias ,Model-data benchmarking ,Biological Sciences ,Agricultural and Veterinary Sciences ,Meteorology & Atmospheric Sciences ,Agricultural ,veterinary and food sciences ,Biological sciences ,Earth sciences - Abstract
Large datasets of greenhouse gas and energy surface-atmosphere fluxes measured with the eddy-covariance technique (e.g., FLUXNET2015, AmeriFlux BASE) are widely used to benchmark models and remote-sensing products. This study addresses one of the major challenges facing model-data integration: To what spatial extent do flux measurements taken at individual eddy-covariance sites reflect model- or satellite-based grid cells? We evaluate flux footprints—the temporally dynamic source areas that contribute to measured fluxes—and the representativeness of these footprints for target areas (e.g., within 250–3000 m radii around flux towers) that are often used in flux-data synthesis and modeling studies. We examine the land-cover composition and vegetation characteristics, represented here by the Enhanced Vegetation Index (EVI), in the flux footprints and target areas across 214 AmeriFlux sites, and evaluate potential biases as a consequence of the footprint-to-target-area mismatch. Monthly 80% footprint climatologies vary across sites and through time ranging four orders of magnitude from 103 to 107 m2 due to the measurement heights, underlying vegetation- and ground-surface characteristics, wind directions, and turbulent state of the atmosphere. Few eddy-covariance sites are located in a truly homogeneous landscape. Thus, the common model-data integration approaches that use a fixed-extent target area across sites introduce biases on the order of 4%–20% for EVI and 6%–20% for the dominant land cover percentage. These biases are site-specific functions of measurement heights, target area extents, and land-surface characteristics. We advocate that flux datasets need to be used with footprint awareness, especially in research and applications that benchmark against models and data products with explicit spatial information. We propose a simple representativeness index based on our evaluations that can be used as a guide to identify site-periods suitable for specific applications and to provide general guidance for data use.
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- 2021
13. Substantial hysteresis in emergent temperature sensitivity of global wetland CH4 emissions.
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Chang, Kuang-Yu, Riley, William J, Knox, Sara H, Jackson, Robert B, McNicol, Gavin, Poulter, Benjamin, Aurela, Mika, Baldocchi, Dennis, Bansal, Sheel, Bohrer, Gil, Campbell, David I, Cescatti, Alessandro, Chu, Housen, Delwiche, Kyle B, Desai, Ankur R, Euskirchen, Eugenie, Friborg, Thomas, Goeckede, Mathias, Helbig, Manuel, Hemes, Kyle S, Hirano, Takashi, Iwata, Hiroki, Kang, Minseok, Keenan, Trevor, Krauss, Ken W, Lohila, Annalea, Mammarella, Ivan, Mitra, Bhaskar, Miyata, Akira, Nilsson, Mats B, Noormets, Asko, Oechel, Walter C, Papale, Dario, Peichl, Matthias, Reba, Michele L, Rinne, Janne, Runkle, Benjamin RK, Ryu, Youngryel, Sachs, Torsten, Schäfer, Karina VR, Schmid, Hans Peter, Shurpali, Narasinha, Sonnentag, Oliver, Tang, Angela CI, Torn, Margaret S, Trotta, Carlo, Tuittila, Eeva-Stiina, Ueyama, Masahito, Vargas, Rodrigo, Vesala, Timo, Windham-Myers, Lisamarie, Zhang, Zhen, and Zona, Donatella
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Wetland methane (CH4) emissions ([Formula: see text]) are important in global carbon budgets and climate change assessments. Currently, [Formula: see text] projections rely on prescribed static temperature sensitivity that varies among biogeochemical models. Meta-analyses have proposed a consistent [Formula: see text] temperature dependence across spatial scales for use in models; however, site-level studies demonstrate that [Formula: see text] are often controlled by factors beyond temperature. Here, we evaluate the relationship between [Formula: see text] and temperature using observations from the FLUXNET-CH4 database. Measurements collected across the globe show substantial seasonal hysteresis between [Formula: see text] and temperature, suggesting larger [Formula: see text] sensitivity to temperature later in the frost-free season (about 77% of site-years). Results derived from a machine-learning model and several regression models highlight the importance of representing the large spatial and temporal variability within site-years and ecosystem types. Mechanistic advancements in biogeochemical model parameterization and detailed measurements in factors modulating CH4 production are thus needed to improve global CH4 budget assessments.
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- 2021
14. Author Correction: The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data.
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Pastorello, Gilberto, Trotta, Carlo, Canfora, Eleonora, Chu, Housen, Christianson, Danielle, Cheah, You-Wei, Poindexter, Cristina, Chen, Jiquan, Elbashandy, Abdelrahman, Humphrey, Marty, Isaac, Peter, Polidori, Diego, Reichstein, Markus, Ribeca, Alessio, van Ingen, Catharine, Vuichard, Nicolas, Zhang, Leiming, Amiro, Brian, Ammann, Christof, Arain, M Altaf, Ardö, Jonas, Arkebauer, Timothy, Arndt, Stefan K, Arriga, Nicola, Aubinet, Marc, Aurela, Mika, Baldocchi, Dennis, Barr, Alan, Beamesderfer, Eric, Marchesini, Luca Belelli, Bergeron, Onil, Beringer, Jason, Bernhofer, Christian, Berveiller, Daniel, Billesbach, Dave, Black, Thomas Andrew, Blanken, Peter D, Bohrer, Gil, Boike, Julia, Bolstad, Paul V, Bonal, Damien, Bonnefond, Jean-Marc, Bowling, David R, Bracho, Rosvel, Brodeur, Jason, Brümmer, Christian, Buchmann, Nina, Burban, Benoit, Burns, Sean P, Buysse, Pauline, Cale, Peter, Cavagna, Mauro, Cellier, Pierre, Chen, Shiping, Chini, Isaac, Christensen, Torben R, Cleverly, James, Collalti, Alessio, Consalvo, Claudia, Cook, Bruce D, Cook, David, Coursolle, Carole, Cremonese, Edoardo, Curtis, Peter S, D'Andrea, Ettore, da Rocha, Humberto, Dai, Xiaoqin, Davis, Kenneth J, De Cinti, Bruno, de Grandcourt, Agnes, De Ligne, Anne, De Oliveira, Raimundo C, Delpierre, Nicolas, Desai, Ankur R, Di Bella, Carlos Marcelo, di Tommasi, Paul, Dolman, Han, Domingo, Francisco, Dong, Gang, Dore, Sabina, Duce, Pierpaolo, Dufrêne, Eric, Dunn, Allison, Dušek, Jiří, Eamus, Derek, Eichelmann, Uwe, ElKhidir, Hatim Abdalla M, Eugster, Werner, Ewenz, Cacilia M, Ewers, Brent, Famulari, Daniela, Fares, Silvano, Feigenwinter, Iris, Feitz, Andrew, Fensholt, Rasmus, Filippa, Gianluca, Fischer, Marc, Frank, John, Galvagno, Marta, and Gharun, Mana
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The following authors were omitted from the original version of this Data Descriptor: Markus Reichstein and Nicolas Vuichard. Both contributed to the code development and N. Vuichard contributed to the processing of the ERA-Interim data downscaling. Furthermore, the contribution of the co-author Frank Tiedemann was re-evaluated relative to the colleague Corinna Rebmann, both working at the same sites, and based on this re-evaluation a substitution in the co-author list is implemented (with Rebmann replacing Tiedemann). Finally, two affiliations were listed incorrectly and are corrected here (entries 190 and 193). The author list and affiliations have been amended to address these omissions in both the HTML and PDF versions.
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- 2021
15. Global transpiration data from sap flow measurements: the SAPFLUXNET database
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Poyatos, Rafael, Granda, Víctor, Flo, Víctor, Adams, Mark A, Adorján, Balázs, Aguadé, David, Aidar, Marcos PM, Allen, Scott, Alvarado-Barrientos, M Susana, Anderson-Teixeira, Kristina J, Aparecido, Luiza Maria, Arain, M Altaf, Aranda, Ismael, Asbjornsen, Heidi, Baxter, Robert, Beamesderfer, Eric, Berry, Z Carter, Berveiller, Daniel, Blakely, Bethany, Boggs, Johnny, Bohrer, Gil, Bolstad, Paul V, Bonal, Damien, Bracho, Rosvel, Brito, Patricia, Brodeur, Jason, Casanoves, Fernando, Chave, Jérôme, Chen, Hui, Cisneros, Cesar, Clark, Kenneth, Cremonese, Edoardo, Dang, Hongzhong, David, Jorge S, David, Teresa S, Delpierre, Nicolas, Desai, Ankur R, C., Frederic, Dohnal, Michal, Domec, Jean-Christophe, Dzikiti, Sebinasi, Edgar, Colin, Eichstaedt, Rebekka, El-Madany, Tarek S, Elbers, Jan, Eller, Cleiton B, Euskirchen, Eugénie S, Ewers, Brent, Fonti, Patrick, Forner, Alicia, Forrester, David I, Freitas, Helber C, Galvagno, Marta, Garcia-Tejera, Omar, Ghimire, Chandra Prasad, Gimeno, Teresa E, Grace, John, Granier, André, Griebel, Anne, Guangyu, Yan, Gush, Mark B, Hanson, Paul J, Hasselquist, Niles J, Heinrich, Ingo, Hernandez-Santana, Virginia, Herrmann, Valentine, Hölttä, Teemu, Holwerda, Friso, Irvine, James, Ayutthaya, Supat Isarangkool Na, Jarvis, Paul G, Jochheim, Hubert, Joly, Carlos A, Kaplick, Julia, Kim, Hyun Seok, Klemedtsson, Leif, Kropp, Heather, Lagergren, Fredrik, Lane, Patrick, Lang, Petra, Lapenas, Andrei, Lechuga, Víctor, Lee, Minsu, Leuschner, Christoph, Limousin, Jean-Marc, Linares, Juan Carlos, Linderson, Maj-Lena, Lindroth, Anders, Llorens, Pilar, López-Bernal, Álvaro, Loranty, Michael M, Lüttschwager, Dietmar, Macinnis-Ng, Cate, Maréchaux, Isabelle, Martin, Timothy A, Matheny, Ashley, McDowell, Nate, McMahon, Sean, Meir, Patrick, and Mészáros, Ilona
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Life on Land ,Atmospheric Sciences ,Geochemistry ,Physical Geography and Environmental Geoscience - Abstract
Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land-atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80% of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50% of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56% of the datasets. Many datasets contain data for species that make up 90% or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (10.5281/zenodo.3971689; Poyatos et al., 2020a). The "sapfluxnetr"R package-designed to access, visualize, and process SAPFLUXNET data-is available from CRAN.
- Published
- 2021
16. FLUXNET-CH4: a global, multi-ecosystem dataset and analysis of methane seasonality from freshwater wetlands
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Delwiche, Kyle B, Knox, Sara Helen, Malhotra, Avni, Fluet-Chouinard, Etienne, McNicol, Gavin, Feron, Sarah, Ouyang, Zutao, Papale, Dario, Trotta, Carlo, Canfora, Eleonora, Cheah, You-Wei, Christianson, Danielle, Alberto, Ma Carmelita R, Alekseychik, Pavel, Aurela, Mika, Baldocchi, Dennis, Bansal, Sheel, Billesbach, David P, Bohrer, Gil, Bracho, Rosvel, Buchmann, Nina, Campbell, David I, Celis, Gerardo, Chen, Jiquan, Chen, Weinan, Chu, Housen, Dalmagro, Higo J, Dengel, Sigrid, Desai, Ankur R, Detto, Matteo, Dolman, Han, Eichelmann, Elke, Euskirchen, Eugenie, Famulari, Daniela, Fuchs, Kathrin, Goeckede, Mathias, Gogo, Sébastien, Gondwe, Mangaliso J, Goodrich, Jordan P, Gottschalk, Pia, Graham, Scott L, Heimann, Martin, Helbig, Manuel, Helfter, Carole, Hemes, Kyle S, Hirano, Takashi, Hollinger, David, Hörtnagl, Lukas, Iwata, Hiroki, Jacotot, Adrien, Jurasinski, Gerald, Kang, Minseok, Kasak, Kuno, King, John, Klatt, Janina, Koebsch, Franziska, Krauss, Ken W, Lai, Derrick YF, Lohila, Annalea, Mammarella, Ivan, Marchesini, Luca Belelli, Manca, Giovanni, Matthes, Jaclyn Hatala, Maximov, Trofim, Merbold, Lutz, Mitra, Bhaskar, Morin, Timothy H, Nemitz, Eiko, Nilsson, Mats B, Niu, Shuli, Oechel, Walter C, Oikawa, Patricia Y, Ono, Keisuke, Peichl, Matthias, Peltola, Olli, Reba, Michele L, Richardson, Andrew D, Riley, William, Runkle, Benjamin RK, Ryu, Youngryel, Sachs, Torsten, Sakabe, Ayaka, Sanchez, Camilo Rey, Schuur, Edward A, Schäfer, Karina VR, Sonnentag, Oliver, Sparks, Jed P, Stuart-Haëntjens, Ellen, Sturtevant, Cove, Sullivan, Ryan C, Szutu, Daphne J, Thom, Jonathan E, Torn, Margaret S, Tuittila, Eeva-Stiina, Turner, Jessica, Ueyama, Masahito, Valach, Alex C, Vargas, Rodrigo, Varlagin, Andrej, and Vazquez-Lule, Alma
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Earth Sciences ,Atmospheric Sciences ,Climate Action ,Geochemistry ,Physical Geography and Environmental Geoscience ,Atmospheric sciences ,Geoinformatics ,Physical geography and environmental geoscience - Abstract
Methane (CH4) emissions from natural landscapes constitute roughly half of global CH4 contributions to the atmosphere, yet large uncertainties remain in the absolute magnitude and the seasonality of emission quantities and drivers. Eddy covariance (EC) measurements of CH4 flux are ideal for constraining ecosystem-scale CH4 emissions due to quasi-continuous and high-temporal-resolution CH4 flux measurements, coincident carbon dioxide, water, and energy flux measurements, lack of ecosystem disturbance, and increased availability of datasets over the last decade. Here, we (1) describe the newly published dataset, FLUXNET-CH4 Version 1.0, the first open-source global dataset of CH4 EC measurements (available at https://fluxnet.org/data/fluxnet-ch4-community-product/, last access: 7 April 2021). FLUXNET-CH4 includes half-hourly and daily gap-filled and non-gap-filled aggregated CH4 fluxes and meteorological data from 79 sites globally: 42 freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drained ecosystems, 7 rice paddy sites, 2 lakes, and 15 uplands. Then, we (2) evaluate FLUXNET-CH4 representativeness for freshwater wetland coverage globally because the majority of sites in FLUXNET-CH4 Version 1.0 are freshwater wetlands which are a substantial source of total atmospheric CH4 emissions; and (3) we provide the first global estimates of the seasonal variability and seasonality predictors of freshwater wetland CH4 fluxes. Our representativeness analysis suggests that the freshwater wetland sites in the dataset cover global wetland bioclimatic attributes (encompassing energy, moisture, and vegetation-related parameters) in arctic, boreal, and temperate regions but only sparsely cover humid tropical regions. Seasonality metrics of wetland CH4 emissions vary considerably across latitudinal bands. In freshwater wetlands (except those between 20g g€¯S to 20g g€¯N) the spring onset of elevated CH4 emissions starts 3g€¯d earlier, and the CH4 emission season lasts 4g€¯d longer, for each degree Celsius increase in mean annual air temperature. On average, the spring onset of increasing CH4 emissions lags behind soil warming by 1 month, with very few sites experiencing increased CH4 emissions prior to the onset of soil warming. In contrast, roughly half of these sites experience the spring onset of rising CH4 emissions prior to the spring increase in gross primary productivity (GPP). The timing of peak summer CH4 emissions does not correlate with the timing for either peak summer temperature or peak GPP. Our results provide seasonality parameters for CH4 modeling and highlight seasonality metrics that cannot be predicted by temperature or GPP (i.e., seasonality of CH4 peak). FLUXNET-CH4 is a powerful new resource for diagnosing and understanding the role of terrestrial ecosystems and climate drivers in the global CH4 cycle, and future additions of sites in tropical ecosystems and site years of data collection will provide added value to this database. All seasonality parameters are available at 10.5281/zenodo.4672601 (Delwiche et al., 2021). Additionally, raw FLUXNET-CH4 data used to extract seasonality parameters can be downloaded from https://fluxnet.org/data/fluxnet-ch4-community-product/ (last access: 7 April 2021), and a complete list of the 79 individual site data DOIs is provided in Table 2 of this paper.
- Published
- 2021
17. Crop yield prediction via explainable AI and interpretable machine learning: Dangers of black box models for evaluating climate change impacts on crop yield
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Hu, Tongxi, Zhang, Xuesong, Bohrer, Gil, Liu, Yanlan, Zhou, Yuyu, Martin, Jay, Li, Yang, and Zhao, Kaiguang
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- 2023
- Full Text
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18. The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data.
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Pastorello, Gilberto, Trotta, Carlo, Canfora, Eleonora, Chu, Housen, Christianson, Danielle, Cheah, You-Wei, Poindexter, Cristina, Chen, Jiquan, Elbashandy, Abdelrahman, Humphrey, Marty, Isaac, Peter, Polidori, Diego, Reichstein, Markus, Ribeca, Alessio, van Ingen, Catharine, Vuichard, Nicolas, Zhang, Leiming, Amiro, Brian, Ammann, Christof, Arain, M Altaf, Ardö, Jonas, Arkebauer, Timothy, Arndt, Stefan K, Arriga, Nicola, Aubinet, Marc, Aurela, Mika, Baldocchi, Dennis, Barr, Alan, Beamesderfer, Eric, Marchesini, Luca Belelli, Bergeron, Onil, Beringer, Jason, Bernhofer, Christian, Berveiller, Daniel, Billesbach, Dave, Black, Thomas Andrew, Blanken, Peter D, Bohrer, Gil, Boike, Julia, Bolstad, Paul V, Bonal, Damien, Bonnefond, Jean-Marc, Bowling, David R, Bracho, Rosvel, Brodeur, Jason, Brümmer, Christian, Buchmann, Nina, Burban, Benoit, Burns, Sean P, Buysse, Pauline, Cale, Peter, Cavagna, Mauro, Cellier, Pierre, Chen, Shiping, Chini, Isaac, Christensen, Torben R, Cleverly, James, Collalti, Alessio, Consalvo, Claudia, Cook, Bruce D, Cook, David, Coursolle, Carole, Cremonese, Edoardo, Curtis, Peter S, D'Andrea, Ettore, da Rocha, Humberto, Dai, Xiaoqin, Davis, Kenneth J, Cinti, Bruno De, Grandcourt, Agnes de, Ligne, Anne De, De Oliveira, Raimundo C, Delpierre, Nicolas, Desai, Ankur R, Di Bella, Carlos Marcelo, Tommasi, Paul di, Dolman, Han, Domingo, Francisco, Dong, Gang, Dore, Sabina, Duce, Pierpaolo, Dufrêne, Eric, Dunn, Allison, Dušek, Jiří, Eamus, Derek, Eichelmann, Uwe, ElKhidir, Hatim Abdalla M, Eugster, Werner, Ewenz, Cacilia M, Ewers, Brent, Famulari, Daniela, Fares, Silvano, Feigenwinter, Iris, Feitz, Andrew, Fensholt, Rasmus, Filippa, Gianluca, Fischer, Marc, Frank, John, Galvagno, Marta, and Gharun, Mana
- Abstract
The FLUXNET2015 dataset provides ecosystem-scale data on CO2, water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.
- Published
- 2020
19. Carbon sequestration and nitrogen and phosphorus accumulation in a freshwater, estuarine marsh: Effects of microtopography and nutrient loads
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Villa, Jorge A., Bohrer, Gil, Ju, Yang, Wrighton, Kelly, Johnson, Nicholas, and Kinsman-Costello, Lauren
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- 2023
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20. If a tree falls: The role of vegetative environments in boundary layer fluxes
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Bohrer, Gil, primary and Yazbeck, Theresia, additional
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- 2023
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21. Contributors
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Angevine, Wayne M., primary, Arthur, Robert S., additional, Aubinet, Marc, additional, Berry, Kodi L., additional, Bohrer, Gil, additional, Butterworth, Brian, additional, Desai, Ankur R., additional, Hall, Peter K., additional, Hiscox, April L., additional, Kutter, Eric, additional, McCombs, Alexandria G., additional, Monson, Russell K., additional, Nappo, Carmen J., additional, Paleri, Sreenath, additional, Viner, Brian, additional, Yazbeck, Theresia, additional, and Yi, Chuixiang, additional
- Published
- 2023
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22. Disturbance-accelerated succession increases the production of a temperate forest
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Gough, Christopher M., Bohrer, Gil, Hardiman, Brady S., Nave, Lucas E., Vogel, Christoph S., Atkins, Jeff W., Bond-Lamberty, Ben, Fahey, Robert T., Fotis, Alexander T., Grigri, Maxim S., Haber, Lisa T., Ju, Yang, Kleinke, Callie L., Mathes, Kayla C., Nadelhoffer, Knute J., Stuart-Haëntjens, Ellen, and Curtis, Peter S.
- Published
- 2021
23. Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands
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Wilkins, Michael, primary, Bechtold, Emily, additional, Ellenbogen, Jared, additional, Villa, Jorge, additional, Ferreira, Djennyffer de Melo, additional, Oliverio, Angela, additional, Kostka, Joel, additional, Rich, Virginia, additional, Varner, Ruth, additional, Bansal, Sheel, additional, Ward, Eric, additional, Bohrer, Gil, additional, Borton, Mikayla, additional, and Wrighton, Kelly, additional
- Published
- 2024
- Full Text
- View/download PDF
24. Towards an integrated science of movement: converging research on animal movement ecology and human mobility science
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Miller, Harvey J, Dodge, Somayeh, Miller, Jennifer, and Bohrer, Gil
- Subjects
Clinical Research ,Mobility ,mobile objects ,personal movement models ,Physical Geography and Environmental Geoscience ,Information Systems ,Geomatic Engineering ,Geological & Geomatics Engineering - Abstract
There is long-standing scientific interest in understanding purposeful movement by animals and humans. Traditionally, collecting data on individual moving entities was difficult and time-consuming, limiting scientific progress. The growth of location-aware and other geospatial technologies for capturing, managing and analyzing moving objects data are shattering these limitations, leading to revolutions in animal movement ecology and human mobility science. Despite parallel transitions towards massive individual-level data collected automatically via sensors, there is little scientific cross-fertilization across the animal and human divide. There are potential synergies from converging these separate domains towards an integrated science of movement. This paper discusses the data-driven revolutions in the animal movement ecology and human mobility science, their contrasting worldviews and, as examples of complementarity, transdisciplinary questions that span both fields. We also identify research challenges that should be met to develop an integrated science of movement trajectories.
- Published
- 2019
25. FLUXNET-CH4 Synthesis Activity: Objectives, Observations, and Future Directions FLUXNET-CH4 Synthesis Activity: Objectives, Observations, and Future Directions
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Knox, Sara H, Jackson, Robert B, Poulter, Benjamin, McNicol, Gavin, Fluet-Chouinard, Etienne, Zhang, Zhen, Hugelius, Gustaf, Bousquet, Philippe, Canadell, Josep G, Saunois, Marielle, Papale, Dario, Chu, Housen, Keenan, Trevor F, Baldocchi, Dennis, Torn, Margaret S, Mammarella, Ivan, Trotta, Carlo, Aurela, Mika, Bohrer, Gil, Campbell, David I, Cescatti, Alessandro, Chamberlain, Samuel, Chen, Jiquan, Chen, Weinan, Dengel, Sigrid, Desai, Ankur R, Euskirchen, Eugenie, Friborg, Thomas, Gasbarra, Daniele, Goded, Ignacio, Goeckede, Mathias, Heimann, Martin, Helbig, Manuel, Hirano, Takashi, Hollinger, David Y, Iwata, Hiroki, Kang, Minseok, Klatt, Janina, Krauss, Ken W, Kutzbach, Lars, Lohila, Annalea, Mitra, Bhaskar, Morin, Timothy H, Nilsson, Mats B, Niu, Shuli, Noormets, Asko, Oechel, Walter C, Peichl, Matthias, Peltola, Olli, Reba, Michele L, Richardson, Andrew D, Runkle, Benjamin RK, Ryu, Youngryel, Sachs, Torsten, Schäfer, Karina VR, Schmid, Hans Peter, Shurpali, Narasinha, Sonnentag, Oliver, Tang, Angela CI, Ueyama, Masahito, Vargas, Rodrigo, Vesala, Timo, Ward, Eric J, Windham-Myers, Lisamarie, Wohlfahrt, Georg, and Zona, Donatella
- Subjects
Earth Sciences ,Atmospheric Sciences ,Climate Change Science ,Astronomical and Space Sciences ,Physical Geography and Environmental Geoscience ,Meteorology & Atmospheric Sciences ,Atmospheric sciences ,Climate change science - Abstract
We describe a new coordination activity and initial results for a global synthesis of eddy covariance CH4 flux measurements.
- Published
- 2019
26. Biological Earth observation with animal sensors
- Author
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Åkesson, Susanne, Anisimov, Yury, Antonov, Aleksey, Arnold, Walter, Bairlein, Franz, Baltà, Oriol, Baum, Diane, Beck, Mario, Belonovich, Olga, Belyaev, Mikhail, Berger, Matthias, Berthold, Peter, Bittner, Steffen, Blake, Stephen, Block, Barbara, Bloche, Daniel, Boehning-Gaese, Katrin, Bohrer, Gil, Bojarinova, Julia, Bommas, Gerhard, Bourski, Oleg, Bragin, Albert, Bragin, Alexandr, Bristol, Rachel, Brlík, Vojtěch, Bulyuk, Victor, Cagnacci, Francesca, Carlson, Ben, Chapple, Taylor K., Chefira, Kalkidan F., Cheng, Yachang, Chernetsov, Nikita, Cierlik, Grzegorz, Christiansen, Simon S., Clarabuch, Oriol, Cochran, William, Cornelius, Jamie Margaret, Couzin, Iain, Crofoot, Margret C., Cruz, Sebastian, Davydov, Alexander, Davidson, Sarah, Dech, Stefan, Dechmann, Dina, Demidova, Ekaterina, Dettmann, Jan, Dittmar, Sven, Dorofeev, Dmitry, Drenckhahn, Detlev, Dubyanskiy, Vladimir, Egorov, Nikolay, Ehnbom, Sophie, Ellis-Soto, Diego, Ewald, Ralf, Feare, Chris, Fefelov, Igor, Fehérvári, Péter, Fiedler, Wolfgang, Flack, Andrea, Froböse, Magnus, Fufachev, Ivan, Futoran, Pavel, Gabyshev, Vyachaslav, Gagliardo, Anna, Garthe, Stefan, Gashkov, Sergey, Gibson, Luke, Goymann, Wolfgang, Gruppe, Gerd, Guglielmo, Chris, Hartl, Phil, Hedenström, Anders, Hegemann, Arne, Heine, Georg, Ruiz, Mäggi Hieber, Hofer, Heribert, Huber, Felix, Hurme, Edward, Iannarilli, Fabiola, Illa, Marc, Isaev, Arkadiy, Jakobsen, Bent, Jenni, Lukas, Jenni-Eiermann, Susi, Jesmer, Brett, Jiguet, Frédéric, Karimova, Tatiana, Kasdin, N. Jeremy, Kazansky, Fedor, Kirillin, Ruslan, Klinner, Thomas, Knopp, Andreas, Kölzsch, Andrea, Kondratyev, Alexander, Krondorf, Marco, Ktitorov, Pavel, Kulikova, Olga, Kumar, R. Suresh, Künzer, Claudia, Larionov, Anatoliy, Larose, Christine, Liechti, Felix, Linek, Nils, Lohr, Ashley, Lushchekina, Anna, Mansfield, Kate, Matantseva, Maria, Markovets, Mikhail, Marra, Peter, Masello, Juan F., Melzheimer, Jörg, Menz, Myles H.M., Menzie, Stephen, Meshcheryagina, Swetlana, Miquelle, Dale, Morozov, Vladimir, Mukhin, Andrey, Müller, Inge, Mueller, Thomas, Navedo, Juan G., Nathan, Ran, Nelson, Luke, Németh, Zoltán, Newman, Scott, Norris, Ryan, Nsengimana, Olivier, Okhlopkov, Innokentiy, Oleś, Wioleta, Oliver, Ruth, O’Mara, Teague, Palatitz, Peter, Partecke, Jesko, Pavlick, Ryan, Pedenko, Anastasia, Perry, Alys, Pham, Julie, Piechowski, Daniel, Pierce, Allison, Piersma, Theunis, Pitz, Wolfgang, Plettemeier, Dirk, Pokrovskaya, Irina, Pokrovskaya, Liya, Pokrovsky, Ivan, Pot, Morrison, Procházka, Petr, Quillfeldt, Petra, Rakhimberdiev, Eldar, Ramenofsky, Marilyn, Ranipeta, Ajay, Rapczyński, Jan, Remisiewicz, Magdalena, Rozhnov, Viatcheslav, Rienks, Froukje, Rozhnov, Vyacheslav, Rutz, Christian, Sakhvon, Vital, Sapir, Nir, Safi, Kamran, Schäuffelhut, Friedrich, Schimel, David, Schmidt, Andreas, Shamoun-Baranes, Judy, Sharikov, Alexander, Shearer, Laura, Shemyakin, Evgeny, Sherub, Sherub, Shipley, Ryan, Sica, Yanina, Smith, Thomas B., Simonov, Sergey, Snell, Katherine, Sokolov, Aleksandr, Sokolov, Vasiliy, Solomina, Olga, Soloviev, Mikhail, Spina, Fernando, Spoelstra, Kamiel, Storhas, Martin, Sviridova, Tatiana, Swenson, George, Jr, Taylor, Phil, Thorup, Kasper, Tsvey, Arseny, Tucker, Marlee, Tuppen, Sophie, Turner, Woody, Twizeyimana, Innocent, van der Jeugd, Henk, van Schalkwyk, Louis, van Toor, Mariëlle, Viljoen, Pauli, Visser, Marcel E., Volkmer, Tamara, Volkov, Andrei, Volkov, Sergey, Volkov, Oleg, von Rönn, Jan A.C., Vorneweg, Bernd, Wachter, Bettina, Waldenström, Jonas, Weber, Natalie, Wegmann, Martin, Wehr, Aloysius, Weinzierl, Rolf, Weppler, Johannes, Wilcove, David, Wild, Timm, Williams, Hannah J., Wilshire, John, Wingfield, John, Wunder, Michael, Yachmennikova, Anna, Yanco, Scott, Yohannes, Elisabeth, Zeller, Amelie, Ziegler, Christian, Zięcik, Anna, Zook, Cheryl, Jetz, Walter, Tertitski, Grigori, Kays, Roland, Mueller, Uschi, and Wikelski, Martin
- Published
- 2022
- Full Text
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27. Centennial‐Scale Intensification of Wet and Dry Extremes in North America.
- Author
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Sung, Kyungmin, Bohrer, Gil, and Stagge, James H.
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- *
EFFECT of human beings on climate change , *CLIMATE extremes , *ATMOSPHERIC models , *TREE-rings , *CLIMATOLOGY - Abstract
Drought and pluvial extremes are defined as deviations from typical climatology; however, background climatology can shift over time in a non‐stationary climate, impacting interpretations of extremes. This study evaluated trends in meteorological drought and pluvial extremes by merging tree‐ring reconstructions, observations, and climate‐model simulations spanning 850–2100 CE across North America to determine whether modern and projected future precipitation lies outside the range of natural climate variability. Our results found widespread and spatially consistent exacerbation of drought and pluvial extremes, especially summer drought and winter pluvials, with drying in the west and south, wetting trends in the northeast, and intensification of both extremes across the east and north. Our study suggests that climate change has already shifted precipitation climatology beyond pre‐Industrial climatology and is projected to further intensify ongoing shifts. Plain Language Summary: Managing water resources has become challenging due to the effect of human‐caused climate change on precipitation. This study examines trends in droughts and pluvials from the distant past (850 CE) to the projected future (2100 CE) to determine whether precipitation extremes in the modern, Industrial era and future are beyond what is typical of natural climate variability in North America. Trends were generated by merging information from tree rings, observations, and climate models using a novel statistical approach. Results indicate the widespread intensification of both drought and pluvials–especially summer drought and winter pluvials during the modern and future periods. Spatially, southern and western regions of North America are becoming drier, while the northeast is getting wetter, and central areas of North America show a wider range between drought and pluvial years. Our study suggests that anthropogenic climate change has already modified drought and pluvial extremes beyond natural, pre‐Industrial conditions and these ongoing trends are projected to intensify through the future. Key Points: This study models seasonal drought and pluvial trends, merging reconstructions, observations, and projections from 850 to 2100 CEResults show widespread exacerbation of both extremes with overall drying (wetting) in southern (northeastern) North AmericaModern drought and pluvial distributions are outside pre‐Industrial (1850) conditions, and exhibiting substantial shifts in some regions [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
28. Temporal Dynamics of Aerodynamic Canopy Height Derived From Eddy Covariance Momentum Flux Data Across North American Flux Networks
- Author
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Chu, Housen, Baldocchi, Dennis D, Poindexter, Cristina, Abraha, Michael, Desai, Ankur R, Bohrer, Gil, Arain, M Altaf, Griffis, Timothy, Blanken, Peter D, O'Halloran, Thomas L, Thomas, R Quinn, Zhang, Quan, Burns, Sean P, Frank, John M, Christian, Dold, Brown, Shannon, Black, T Andrew, Gough, Christopher M, Law, Beverly E, Lee, Xuhui, Chen, Jiquan, Reed, David E, Massman, William J, Clark, Kenneth, Hatfield, Jerry, Prueger, John, Bracho, Rosvel, Baker, John M, and Martin, Timothy A
- Subjects
Earth Sciences ,Geomatic Engineering ,Engineering ,Life on Land ,momentum flux ,AmeriFlux ,eddy covariance ,canopy height ,phenology ,Meteorology & Atmospheric Sciences - Abstract
Aerodynamic canopy height (ha) is the effective height of vegetation canopy for its influence on atmospheric fluxes and is a key parameter of surface-atmosphere coupling. However, methods to estimate ha from data are limited. This synthesis evaluates the applicability and robustness of the calculation of ha from eddy covariance momentum-flux data. At 69 forest sites, annual ha robustly predicted site-to-site and year-to-year differences in canopy heights (R2 = 0.88, 111 site-years). At 23 cropland/grassland sites, weekly ha successfully captured the dynamics of vegetation canopies over growing seasons (R2 > 0.70 in 74 site-years). Our results demonstrate the potential of flux-derived ha determination for tracking the seasonal, interannual, and/or decadal dynamics of vegetation canopies including growth, harvest, land use change, and disturbance. The large-scale and time-varying ha derived from flux networks worldwide provides a new benchmark for regional and global Earth system models and satellite remote sensing of canopy structure.
- Published
- 2018
29. Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions.
- Author
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Angle, Jordan C, Morin, Timothy H, Solden, Lindsey M, Narrowe, Adrienne B, Smith, Garrett J, Borton, Mikayla A, Rey-Sanchez, Camilo, Daly, Rebecca A, Mirfenderesgi, Golnazalsdat, Hoyt, David W, Riley, William J, Miller, Christopher S, Bohrer, Gil, and Wrighton, Kelly C
- Abstract
The current paradigm, widely incorporated in soil biogeochemical models, is that microbial methanogenesis can only occur in anoxic habitats. In contrast, here we show clear geochemical and biological evidence for methane production in well-oxygenated soils of a freshwater wetland. A comparison of oxic to anoxic soils reveal up to ten times greater methane production and nine times more methanogenesis activity in oxygenated soils. Metagenomic and metatranscriptomic sequencing recover the first near-complete genomes for a novel methanogen species, and show acetoclastic production from this organism was the dominant methanogenesis pathway in oxygenated soils. This organism, Candidatus Methanothrix paradoxum, is prevalent across methane emitting ecosystems, suggesting a global significance. Moreover, in this wetland, we estimate that up to 80% of methane fluxes could be attributed to methanogenesis in oxygenated soils. Together, our findings challenge a widely held assumption about methanogenesis, with significant ramifications for global methane estimates and Earth system modeling.
- Published
- 2017
30. Phenology of Photosynthesis in Winter‐Dormant Temperate and Boreal Forests: Long‐Term Observations From Flux Towers and Quantitative Evaluation of Phenology Models
- Author
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Bowling, David R., primary, Schädel, Christina, additional, Smith, Kenneth R., additional, Richardson, Andrew D., additional, Bahn, Michael, additional, Arain, M. Altaf, additional, Varlagin, Andrej, additional, Ouimette, Andrew P., additional, Frank, John M., additional, Barr, Alan G., additional, Mammarella, Ivan, additional, Šigut, Ladislav, additional, Foord, Vanessa, additional, Burns, Sean P., additional, Montagnani, Leonardo, additional, Litvak, Marcy E., additional, Munger, J. William, additional, Ikawa, Hiroki, additional, Hollinger, David Y., additional, Blanken, Peter D., additional, Ueyama, Masahito, additional, Matteucci, Giorgio, additional, Bernhofer, Christian, additional, Bohrer, Gil, additional, Iwata, Hiroki, additional, Ibrom, Andreas, additional, Pilegaard, Kim, additional, Spittlehouse, David L., additional, Kobayashi, Hideki, additional, Desai, Ankur R., additional, Staebler, Ralf M., additional, and Black, T. Andrew, additional
- Published
- 2024
- Full Text
- View/download PDF
31. Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands
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Bechtold, Emily K, primary, Ellenbogen, Jared B, additional, Villa, Jorge A, additional, de Melo Ferreira, Djennyfer K, additional, Oliverio, Angela M, additional, Kostka, Joel E., additional, Rich, Virginia I., additional, Varner, Ruth K, additional, Bansal, Sheel, additional, Ward, Eric J, additional, Bohrer, Gil, additional, Borton, Mikayla A, additional, Wrighton, Kelly C, additional, and Wilkins, Michael J, additional
- Published
- 2024
- Full Text
- View/download PDF
32. Seasonality in aerodynamic resistance across a range of North American ecosystems
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Young, Adam M., Friedl, Mark A., Seyednasrollah, Bijan, Beamesderfer, Eric, Carrillo, Carlos M., Li, Xiaolu, Moon, Minkyu, Arain, M. Altaf, Baldocchi, Dennis D., Blanken, Peter D., Bohrer, Gil, Burns, Sean P., Chu, Housen, Desai, Ankur R., Griffis, Timothy J., Hollinger, David Y., Litvak, Marcy E., Novick, Kim, Scott, Russell L., Suyker, Andrew E., Verfaillie, Joseph, Wood, Jeffrey D., and Richardson, Andrew D.
- Published
- 2021
- Full Text
- View/download PDF
33. Rendering the metabolic wiring powering wetland soil methane production
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Oliverio, Angela M., primary, Narrowe, Adrienne B., additional, Villa, Jorge A., additional, Rinke, Christian, additional, Hoyt, David W., additional, Liu, Pengfei, additional, McGivern, Bridget B., additional, Bechtold, Emily K., additional, Ellenbogen, Jared B., additional, Daly, Rebecca A., additional, Smith, Garrett J., additional, Angle, Jordan C., additional, Flynn, Rory M., additional, Freiburger, Andrew P., additional, Louie, Katherine B., additional, Stemple, Brooke, additional, Northen, Trent R., additional, Henry, Christopher, additional, Miller, Christopher S., additional, Morin, Timothy H., additional, Bohrer, Gil, additional, Borton, Mikayla A., additional, and Wrighton, Kelly C., additional
- Published
- 2024
- Full Text
- View/download PDF
34. Plant-mediated methane transport in emergent and floating-leaved species of a temperate freshwater mineral-soil wetland
- Author
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Villa, Jorge A., Ju, Yang, Stephen, Taylor, Rey-Sanchez, Camilo, Wrighton, Kelly C., and Bohrer, Gil
- Published
- 2020
35. Effects of spatial heterogeneity of leaf density and crown spacing of canopy patches on dry deposition rates
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Yazbeck, Theresia, Bohrer, Gil, Vines, Chante', De Roo, Frederik, Mauder, Matthias, and Bakshi, Bhavik
- Published
- 2021
- Full Text
- View/download PDF
36. Root lateral interactions drive water uptake patterns under water limitation
- Author
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Agee, Elizabeth, He, Lingli, Bisht, Gautam, Couvreur, Valentin, Shahbaz, Parisa, Meunier, Félicien, Gough, Christopher M., Matheny, Ashley M., Bohrer, Gil, and Ivanov, Valeriy
- Published
- 2021
- Full Text
- View/download PDF
37. Phenology of Photosynthesis in Winter-Dormant Temperate and Boreal Forests:Long-Term Observations From Flux Towers and Quantitative Evaluation of Phenology Models
- Author
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Bowling, David R., Schädel, Christina, Smith, Kenneth R., Richardson, Andrew D., Bahn, Michael, Arain, M. Altaf, Varlagin, Andrej, Ouimette, Andrew P., Frank, John M., Barr, Alan G., Mammarella, Ivan, Šigut, Ladislav, Foord, Vanessa, Burns, Sean P., Montagnani, Leonardo, Litvak, Marcy E., Munger, J. William, Ikawa, Hiroki, Hollinger, David Y., Blanken, Peter D., Ueyama, Masahito, Matteucci, Giorgio, Bernhofer, Christian, Bohrer, Gil, Iwata, Hiroki, Ibrom, Andreas, Pilegaard, Kim, Spittlehouse, David L., Kobayashi, Hideki, Desai, Ankur R., Staebler, Ralf M., Black, T. Andrew, Bowling, David R., Schädel, Christina, Smith, Kenneth R., Richardson, Andrew D., Bahn, Michael, Arain, M. Altaf, Varlagin, Andrej, Ouimette, Andrew P., Frank, John M., Barr, Alan G., Mammarella, Ivan, Šigut, Ladislav, Foord, Vanessa, Burns, Sean P., Montagnani, Leonardo, Litvak, Marcy E., Munger, J. William, Ikawa, Hiroki, Hollinger, David Y., Blanken, Peter D., Ueyama, Masahito, Matteucci, Giorgio, Bernhofer, Christian, Bohrer, Gil, Iwata, Hiroki, Ibrom, Andreas, Pilegaard, Kim, Spittlehouse, David L., Kobayashi, Hideki, Desai, Ankur R., Staebler, Ralf M., and Black, T. Andrew
- Abstract
We examined the seasonality of photosynthesis in 46 evergreen needleleaf (evergreen needleleaf forests (ENF)) and deciduous broadleaf (deciduous broadleaf forests (DBF)) forests across North America and Eurasia. We quantified the onset and end (StartGPP and EndGPP) of photosynthesis in spring and autumn based on the response of net ecosystem exchange of CO2 to sunlight. To test the hypothesis that snowmelt is required for photosynthesis to begin, these were compared with end of snowmelt derived from soil temperature. ENF forests achieved 10% of summer photosynthetic capacity ∼3 weeks before end of snowmelt, while DBF forests achieved that capacity ∼4 weeks afterward. DBF forests increased photosynthetic capacity in spring faster (1.95% d−1) than ENF (1.10% d−1), and their active season length (EndGPP–StartGPP) was ∼50 days shorter. We hypothesized that warming has influenced timing of the photosynthesis season. We found minimal evidence for long-term change in StartGPP, EndGPP, or air temperature, but their interannual anomalies were significantly correlated. Warmer weather was associated with earlier StartGPP (1.3–2.5 days °C−1) or later EndGPP (1.5–1.8 days °C−1, depending on forest type and month). Finally, we tested whether existing phenological models could predict StartGPP and EndGPP. For ENF forests, air temperature- and daylength-based models provided best predictions for StartGPP, while a chilling-degree-day model was best for EndGPP. The root mean square errors (RMSE) between predicted and observed StartGPP and EndGPP were 11.7 and 11.3 days, respectively. For DBF forests, temperature- and daylength-based models yielded the best results (RMSE 6.3 and 10.5 days).
- Published
- 2024
38. Synergistic use of SMAP and OCO-2 data in assessing the responses of ecosystem productivity to the 2018 U.S. drought
- Author
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Li, Xing, Xiao, Jingfeng, Kimball, John S., Reichle, Rolf H., Scott, Russell L., Litvak, Marcy E., Bohrer, Gil, and Frankenberg, Christian
- Published
- 2020
- Full Text
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39. Quantifying CH4 concentration spikes above baseline and attributing CH4 sources to hydraulic fracturing activities by continuous monitoring at an off-site tower
- Author
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Russell, Sarah J., Vines, Chante’ D., Bohrer, Gil, Johnson, Derek R., Villa, Jorge A., Heltzel, Robert, Rey-Sanchez, Camilo, and Matthes, Jaclyn H.
- Published
- 2020
- Full Text
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40. Connecting air quality regulating ecosystem services with beneficiaries through quantitative serviceshed analysis
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Charles, Michael, Ziv, Guy, Bohrer, Gil, and Bakshi, Bhavik R.
- Published
- 2020
- Full Text
- View/download PDF
41. Short-term favorable weather conditions are an important control of interannual variability in carbon and water fluxes.
- Author
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Zscheischler, Jakob, Fatichi, Simone, Wolf, Sebastian, Blanken, Peter D, Bohrer, Gil, Clark, Kenneth, Desai, Ankur R, Hollinger, David, Keenan, Trevor, Novick, Kimberly A, and Seneviratne, Sonia I
- Subjects
ecosystem fluxes ,eddy covariance ,interannual variability ,short time scales ,Geophysics - Abstract
Ecosystem models often perform poorly in reproducing interannual variability in carbon and water fluxes, resulting in considerable uncertainty when estimating the land-carbon sink. While many aggregated variables (growing season length, seasonal precipitation, or temperature) have been suggested as predictors for interannual variability in carbon fluxes, their explanatory power is limited and uncertainties remain as to their relative contributions. Recent results show that the annual count of hours where evapotranspiration (ET) is larger than its 95th percentile is strongly correlated with the annual variability of ET and gross primary production (GPP) in an ecosystem model. This suggests that the occurrence of favorable conditions has a strong influence on the annual carbon budget. Here we analyzed data from eight forest sites of the AmeriFlux network with at least 7 years of continuous measurements. We show that for ET and the carbon fluxes GPP, ecosystem respiration (RE), and net ecosystem production, counting the "most active hours/days" (i.e., hours/days when the flux exceeds a high percentile) correlates well with the respective annual sums, with correlation coefficients generally larger than 0.8. Phenological transitions have much weaker explanatory power. By exploiting the relationship between most active hours and interannual variability, we classify hours as most active or less active and largely explain interannual variability in ecosystem fluxes, particularly for GPP and RE. Our results suggest that a better understanding and modeling of the occurrence of large values in high-frequency ecosystem fluxes will result in a better understanding of interannual variability of these fluxes.
- Published
- 2016
42. Long-legged buzzard Buteo rufinus
- Author
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Friedemann, Guilad, primary, Leshem, Yossi, additional, Bohrer, Gil, additional, Bar-Massada, Avi, additional, and Izhaki, Ido, additional
- Published
- 2021
- Full Text
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43. On the Relationship Between Aquatic CO2 Concentration and Ecosystem Fluxes in Some of the World’s Key Wetland Types
- Author
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Richardson, Jessica L., primary, Desai, Ankur R., additional, Thom, Jonathan, additional, Lindgren, Kim, additional, Laudon, Hjalmar, additional, Peichl, Matthias, additional, Nilsson, Mats, additional, Campeau, Audrey, additional, Järveoja, Järvi, additional, Hawman, Peter, additional, Mishra, Deepak R., additional, Smith, Dontrece, additional, D’Acunha, Brenda, additional, Knox, Sara H., additional, Ng, Darian, additional, Johnson, Mark S., additional, Blackstock, Joshua, additional, Malone, Sparkle L., additional, Oberbauer, Steve F., additional, Detto, Matteo, additional, Wickland, Kimberly P., additional, Forbrich, Inke, additional, Weston, Nathaniel, additional, Hung, Jacqueline K. Y., additional, Edgar, Colin, additional, Euskirchen, Eugenie S., additional, Bret-Harte, Syndonia, additional, Dobkowski, Jason, additional, Kling, George, additional, Kane, Evan S., additional, Badiou, Pascal, additional, Bogard, Matthew, additional, Bohrer, Gil, additional, O’Halloran, Thomas, additional, Ritson, Jonny, additional, Arias-Ortiz, Ariane, additional, Baldocchi, Dennis, additional, Oikawa, Patty, additional, Shahan, Julie, additional, and Matsumura, Maiyah, additional
- Published
- 2023
- Full Text
- View/download PDF
44. Estimating the movements of terrestrial animal populations using broad-scale occurrence data
- Author
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Supp, Sarah R., Bohrer, Gil, Fieberg, John, and La Sorte, Frank A.
- Published
- 2021
- Full Text
- View/download PDF
45. Greenness indices from digital cameras predict the timing and seasonal dynamics of canopy‐scale photosynthesis
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Toomey, Michael, Friedl, Mark A, Frolking, Steve, Hufkens, Koen, Klosterman, Stephen, Sonnentag, Oliver, Baldocchi, Dennis D, Bernacchi, Carl J, Biraud, Sebastien C, Bohrer, Gil, Brzostek, Edward, Burns, Sean P, Coursolle, Carole, Hollinger, David Y, Margolis, Hank A, Mccaughey, Harry, Monson, Russell K, Munger, J William, Pallardy, Stephen, Phillips, Richard P, Torn, Margaret S, Wharton, Sonia, Zeri, Marcelo, And, Andrew D, and Richardson, Andrew D
- Subjects
Plant Biology ,Biological Sciences ,Forests ,Photography ,Photosynthesis ,Pigments ,Biological ,Plants ,Seasons ,Time Factors ,deciduous broadleaf forest ,digital repeat photography ,evergreen needleleaf forest ,grassland ,gross primary productivity ,PhenoCam ,phenology ,photosynthesis ,seasonality ,Environmental Sciences ,Agricultural and Veterinary Sciences ,Ecology ,Agricultural ,veterinary and food sciences ,Biological sciences ,Environmental sciences - Abstract
The proliferation of digital cameras co-located with eddy covariance instrumentation provides new opportunities to better understand the relationship between canopy phenology and the seasonality of canopy photosynthesis. In this paper we analyze the abilities and limitations of canopy color metrics measured by digital repeat photography to track seasonal canopy development and photosynthesis, determine phenological transition dates, and estimate intra-annual and interannual variability in canopy photosynthesis. We used 59 site-years of camera imagery and net ecosystem exchange measurements from 17 towers spanning three plant functional types (deciduous broadleaf forest, evergreen needleleaf forest, and grassland/crops) to derive color indices and estimate gross primary productivity (GPP). GPP was strongly correlated with greenness derived from camera imagery in all three plant functional types. Specifically, the beginning of the photosynthetic period in deciduous broadleaf forest and grassland/crops and the end of the photosynthetic period in grassland/crops were both correlated with changes in greenness; changes in redness were correlated with the end of the photosynthetic period in deciduous broadleaf forest. However, it was not possible to accurately identify the beginning or ending of the photosynthetic period using camera greenness in evergreen needleleaf forest. At deciduous broadleaf sites, anomalies in integrated greenness and total GPP were significantly correlated up to 60 days after the mean onset date for the start of spring. More generally, results from this work demonstrate that digital repeat photography can be used to quantify both the duration of the photosynthetically active period as well as total GPP in deciduous broadleaf forest and grassland/crops, but that new and different approaches are required before comparable results can be achieved in evergreen needleleaf forest.
- Published
- 2015
46. Environmental drivers of variability in the movement ecology of turkey vultures (Cathartes aura) in North and South America
- Author
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Dodge, Somayeh, Bohrer, Gil, Bildstein, Keith, Davidson, Sarah C, Weinzierl, Rolf, Bechard, Marc J, Barber, David, Kays, Roland, Brandes, David, Han, Jiawei, and Wikelski, Martin
- Subjects
Biological Sciences ,Ecology ,Adaptation ,Physiological ,Animal Migration ,Animals ,Birds ,Ecosystem ,Logistic Models ,North America ,Satellite Imagery ,Seasons ,South America ,avian scavengers ,vultures ,movement ecology ,migration ,geographical variability ,remote-sensing observations ,Medical and Health Sciences ,Evolutionary Biology ,Biological sciences ,Biomedical and clinical sciences - Abstract
Variation is key to the adaptability of species and their ability to survive changes to the Earth's climate and habitats. Plasticity in movement strategies allows a species to better track spatial dynamics of habitat quality. We describe the mechanisms that shape the movement of a long-distance migrant bird (turkey vulture, Cathartes aura) across two continents using satellite tracking coupled with remote-sensing science. Using nearly 10 years of data from 24 satellite-tracked vultures in four distinct populations, we describe an enormous amount of variation in their movement patterns. We related vulture movement to environmental conditions and found important correlations explaining how far they need to move to find food (indexed by the Normalized Difference Vegetation Index) and how fast they can move based on the prevalence of thermals and temperature. We conclude that the extensive variability in the movement ecology of turkey vultures, facilitated by their energetically efficient thermal soaring, suggests that this species is likely to do well across periods of modest climate change. The large scale and sample sizes needed for such analysis in a widespread migrant emphasizes the need for integrated and collaborative efforts to obtain tracking data and for policies, tools and open datasets to encourage such collaborations and data sharing.
- Published
- 2014
47. Integrating NDVI-Based Within-Wetland Vegetation Classification in a Land Surface Model Improves Methane Emission Estimations.
- Author
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Yazbeck, Theresia, Bohrer, Gil, Shchehlov, Oleksandr, Ward, Eric, Bordelon, Robert, Villa, Jorge A., and Ju, Yang
- Subjects
- *
VEGETATION classification , *GREENHOUSE gases , *COASTAL wetlands , *PHRAGMITES , *METHANE , *LANDSAT satellites - Abstract
Earth system models (ESMs) are a common tool for estimating local and global greenhouse gas emissions under current and projected future conditions. Efforts are underway to expand the representation of wetlands in the Energy Exascale Earth System Model (E3SM) Land Model (ELM) by resolving the simultaneous contributions to greenhouse gas fluxes from multiple, different, sub-grid-scale patch-types, representing different eco-hydrological patches within a wetland. However, for this effort to be effective, it should be coupled with the detection and mapping of within-wetland eco-hydrological patches in real-world wetlands, providing models with corresponding information about vegetation cover. In this short communication, we describe the application of a recently developed NDVI-based method for within-wetland vegetation classification on a coastal wetland in Louisiana and the use of the resulting yearly vegetation cover as input for ELM simulations. Processed Harmonized Landsat and Sentinel-2 (HLS) datasets were used to drive the sub-grid composition of simulated wetland vegetation each year, thus tracking the spatial heterogeneity of wetlands at sufficient spatial and temporal resolutions and providing necessary input for improving the estimation of methane emissions from wetlands. Our results show that including NDVI-based classification in an ELM reduced the uncertainty in predicted methane flux by decreasing the model's RMSE when compared to Eddy Covariance measurements, while a minimal bias was introduced due to the resampling technique involved in processing HLS data. Our study shows promising results in integrating the remote sensing-based classification of within-wetland vegetation cover into earth system models, while improving their performances toward more accurate predictions of important greenhouse gas emissions. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
48. Three Decades of Wetland Methane Surface Flux Modeling by Earth System Models‐Advances, Applications, and Challenges.
- Author
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Forbrich, Inke, Yazbeck, Theresia, Sulman, Benjamin, Morin, Timothy H., Tang, Angela Che Ing, and Bohrer, Gil
- Subjects
ATMOSPHERIC methane ,WETLANDS ,GREENHOUSE gases ,METHANE ,NATURAL gas ,WATER table ,CARBON dioxide - Abstract
Earth System Models (ESMs) simulate the exchange of mass and energy between the land surface and the atmosphere, with a key focus on modeling natural greenhouse gas feedbacks. Methane is the second most important greenhouse gas after carbon dioxide. There are growing concerns over the rapidly increasing methane concentration in the atmosphere, underscoring the need for accurate global modeling of its emissions using ESMs. Of the multitude of sources of methane globally, wetlands are the largest natural emitters for methane, leading to significant efforts targeting their representation in ESMs with a special focus on their methane emissions. In this review, we first provide a historical overview of including wetland‐methane components in ESMs and how methane modeling approaches have evolved over time. Second, we discuss recent modeling advancements that show promise for improvements in methane emissions predictions, namely the coupling of surface and atmospheric modules of ESMs, the representation of microtopography and transport mechanisms, the resolution of microbial processes at different spatial‐temporal scales, and the improved mapping of wetland area extent across the different wetland types. Third, we shed light on the different challenges hindering accurate estimations of wetland‐methane emissions, as shown by the consistent discrepancy between bottom‐up and top‐down models' predictions. Finally, we emphasize that more detailed representation of biogeochemistry and dynamic hydrology while resolving the within‐wetland vegetation heterogeneity should improve model predictions, especially when coupled with expanding ground‐based measurement networks and high‐resolution remote sensing mapping of methane‐relevant variables, such as water elevation, water table depth, and methane concentration. Plain Language Summary: Earth system models (ESMs) are computer‐based tools to study and predict the complex relationships between the climate and ecosystem. One key aspect ESMs are used to study is the ecosystem role in emissions and uptake of greenhouse gases. Methane is the second most important greenhouse gas, and wetlands are the largest natural emitters for methane. In this review, we first provide a historical overview of including wetland‐methane components in ESMs and how methane modeling approaches have evolved over time. Second, we discuss recent modeling advancements that show promise for improvements in methane emissions predictions. Third, we shed light on the different challenges hindering accurate estimations of wetland‐methane emissions. Finally, we explore the knowledge gaps and point out some areas where models of wetland methane flux can improve. Key Points: Recent decades have seen significant improvements in simulating wetland‐methane dynamics in ESMs at both local and global scalesChallenges lie in discrepancies in model predictions and global mapping of different wetland typesImproving transport and microbial mechanisms coupled with expanding high‐resolution data sets should improve wetland‐methane estimations [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
49. Corrigendum: Diel, seasonal, and inter-annual variation in carbon dioxide effluxes from lakes and reservoirs (2023 Environ. Res. Lett. 18 034046)
- Author
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Golub, Malgorzata, primary, Koupaei-Abyazani, Nikaan, additional, Vesala, Timo, additional, Mammarella, Ivan, additional, Ojala, Anne, additional, Bohrer, Gil, additional, Weyhenmeyer, Gesa A, additional, Blanken, Peter D, additional, Eugster, Werner, additional, Koebsch, Franziska, additional, Chen, Jiquan, additional, Czajkowski, Kevin, additional, Deshmukh, Chandrashekhar, additional, Guérin, Frederic, additional, Heiskanen, Jouni, additional, Humphreys, Elyn, additional, Jonsson, Anders, additional, Karlsson, Jan, additional, Kling, George, additional, Lee, Xuhui, additional, Liu, Heping, additional, Lohila, Annalea, additional, Lundin, Erik, additional, Morin, Tim, additional, Podgrajsek, Eva, additional, Provenzale, Maria, additional, Rutgersson, Anna, additional, Sachs, Torsten, additional, Sahlée, Erik, additional, Serça, Dominique, additional, Shao, Changliang, additional, Spence, Christopher, additional, Strachan, Ian B, additional, Xiao, Wei, additional, and Desai, Ankur R, additional
- Published
- 2023
- Full Text
- View/download PDF
50. Track Annotation: Determining the Environmental Context of Movement Through the Air
- Author
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Obringer, Renee, Bohrer, Gil, Weinzierl, Rolf, Dodge, Somayeh, Deppe, Jill, Ward, Michael, Brandes, David, Kays, Roland, Flack, Andrea, Wikelski, Martin, Chilson, Phillip B., editor, Frick, Winifred F., editor, Kelly, Jeffrey F., editor, and Liechti, Felix, editor
- Published
- 2017
- Full Text
- View/download PDF
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