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Relativistic study of xenotime, YPO$_4$, containing atoms thorium and uranium as point defects is performed in the framework of cluster model with using the compound-tunable embedding potential (CTEP) method proposed by us recently. The Y-(PO$_4$)$_6$-Y'$_{22}$-O'$_{104}$ cluster for xenotime is considered, in which central part, [Y-(PO$_4$)$_6$]$^{-15}$, is the main cluster, whereas outermost 22 atoms of yttrium and 104 atoms of oxygen are treated as its environment and compose electron-free CTEP with the total charge of $+15$. The P and O atoms of the orthophosphate groups nearest to the central Y atom are treated at all-electron level. The central Y, its substitutes, Th and U, together with environmental Y atoms are described within different versions of the generalized relativistic pseudopotential method. Correctness of our cluster and CTEP models, constructed in the paper, is justified by comparing the Y-O and P-O bond lengths with corresponding periodic structure values of the \ypo4 crystal, both experimental and theoretical. Using this cluster model, chemical properties of solitary point defects, X = U, Th, in xenotime are analyzed. It has been shown that the oxidation state ${+3}$ is energetically more profitable than ${+4}$ not only for thorium but for uranium as well ($\Delta E \approx 5$ eV) despite the notably higher ionic radius of U$^{+3}$ compared to Y$^{+3}$, whereas ionic radii of U$^{+4}$ and Y$^{+3}$ are close. This leads to notable local deformation of crystal geometry around the U$^{+3}$ impurity in xenotime and contradicts to widespread opinion about favorite oxidation state of uranium in such kind of minerals., Comment: 8 pages, 4 figures, 3 tables. Advanced version of this paper is available at https://doi.org/10.1039/D0CP02277B