11 results on '"Bodra N"'
Search Results
2. Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis thaliana
- Author
-
Young, D.R., primary, Pallo, A., additional, Bodra, N., additional, and Messens, J., additional
- Published
- 2017
- Full Text
- View/download PDF
3. Effect of Lubrication on the Wear Resistance of Plasma Sprayed Composite Coatings (Al2O3+ZrO2·5CaO).
- Author
-
Abhinav, Ribeiroa, R., Bodra, N., Goala, B., Raghav, R., Vardhan, A., and Ali, Md. Mahaboob
- Subjects
PLASMA sprayed coatings ,MECHANICAL abrasion ,WEAR resistance ,LUBRICATION & lubricants ,INTERNAL combustion engines ,FRETTING corrosion - Abstract
Tribological investigations were carried out as per ASTM G134 standard, on plasma sprayed composite coatings (Al
2 O3 +ZrO2 ·5CaO), under dry and wet abrasive conditions. 20W40 lubricating engine oil was used as a lubricant. Experiments were carried out under normal loads of 10, 15, & 20N, and at a rotational speed of 200 rpm. Scanning Electron Microscopy was used to study the surface characteristics of the as-sprayed and worn out topcoat. Results obtained from the SEM analysis revealed that abrasive wear was mainly governed by third-body abrasion (twinning effect) under dry abrasive conditions. A significant drop in wear rate was realized under the wet lubricated condition, between 10 and 15 N normal loads and a rise in wear rate was observed above 15 N normal load. At higher load, the lubrication was not very effective. At higher loads, It was also observed that the connection between grains improved leading to reduced micro porosity. This caused less abrasion and greater sliding. Experimental data obtained in this work is of good engineering significance as it can be applied to various engineering applications viz. internal combustion engines, cutting tools, etc. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
4. MakC and MakD are two proteins associated with a tripartite toxin of Vibrio cholerae .
- Author
-
Bodra N, Toh E, Nadeem A, Wai SN, and Persson K
- Abstract
Pathogenic serotypes of Vibrio cholerae , transmitted through contaminated water and food, are responsible for outbreaks of cholera, an acute diarrheal disease. While the cholera toxin is the primary virulence factor, V. cholerae also expresses other virulence factors, such as the tripartite toxin MakABE that is secreted via the bacterial flagellum. These three proteins are co-expressed with two accessory proteins, MakC and MakD, whose functions remain unknown. Here, we present the crystal structures of MakC and MakD, revealing that they are similar in both sequence and structure but lack other close structural relatives. Our study further investigates the roles of MakC and MakD, focusing on their impact on the expression and secretion of the components of the MakABE tripartite toxin. Through deletion mutant analysis, we found that individual deletions of makC or makD do not significantly affect MakA expression or secretion. However, the deletion of both makC and makD impairs the expression of MakB, which is directly downstream, and decreases the expression of MakE, which is separated from makCD by two genes. Conversely, MakA, encoded by the makA gene located between makB and makE, is expressed normally but its secretion is impaired. Additionally, our findings indicate that MakC, in contrast to MakD, exhibits strong interactions with other proteins. Furthermore, both MakC and MakD were observed to be localized within the cytosol of the bacterial cell. This study provides new insights into the regulatory mechanisms affecting the Mak protein family in V. cholerae and highlights the complex interplay between gene proximity and protein expression., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Bodra, Toh, Nadeem, Wai and Persson.)
- Published
- 2024
- Full Text
- View/download PDF
5. Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites.
- Author
-
Huang J, Willems P, Wei B, Tian C, Ferreira RB, Bodra N, Martínez Gache SA, Wahni K, Liu K, Vertommen D, Gevaert K, Carroll KS, Van Montagu M, Yang J, Van Breusegem F, and Messens J
- Subjects
- Catalytic Domain physiology, Cysteine metabolism, Humans, Hydrogen Peroxide metabolism, Mitogen-Activated Protein Kinase 1 metabolism, Oxidation-Reduction, RNA metabolism, Serine metabolism, Signal Transduction physiology, Sulfenic Acids metabolism, Arabidopsis metabolism, Proteins metabolism, Sulfhydryl Compounds metabolism
- Abstract
Hydrogen peroxide (H
2 O2 ) is an important messenger molecule for diverse cellular processes. H2 O2 oxidizes proteinaceous cysteinyl thiols to sulfenic acid, also known as S-sulfenylation, thereby affecting the protein conformation and functionality. Although many proteins have been identified as S-sulfenylation targets in plants, site-specific mapping and quantification remain largely unexplored. By means of a peptide-centric chemoproteomics approach, we mapped 1,537 S-sulfenylated sites on more than 1,000 proteins in Arabidopsis thaliana cells. Proteins involved in RNA homeostasis and metabolism were identified as hotspots for S-sulfenylation. Moreover, S-sulfenylation frequently occurred on cysteines located at catalytic sites of enzymes or on cysteines involved in metal binding, hinting at a direct mode of action for redox regulation. Comparison of human and Arabidopsis S-sulfenylation datasets provided 155 conserved S-sulfenylated cysteines, including Cys181 of the Arabidopsis MITOGEN-ACTIVATED PROTEIN KINASE4 (AtMAPK4) that corresponds to Cys161 in the human MAPK1, which has been identified previously as being S-sulfenylated. We show that, by replacing Cys181 of recombinant AtMAPK4 by a redox-insensitive serine residue, the kinase activity decreased, indicating the importance of this noncatalytic cysteine for the kinase mechanism. Altogether, we quantitatively mapped the S-sulfenylated cysteines in Arabidopsis cells under H2 O2 stress and thereby generated a comprehensive view on the S-sulfenylation landscape that will facilitate downstream plant redox studies., Competing Interests: The authors declare no competing interest.- Published
- 2019
- Full Text
- View/download PDF
6. Protein Promiscuity in H 2 O 2 Signaling.
- Author
-
Young D, Pedre B, Ezeriņa D, De Smet B, Lewandowska A, Tossounian MA, Bodra N, Huang J, Astolfi Rosado L, Van Breusegem F, and Messens J
- Subjects
- Animals, Gene Expression Regulation drug effects, Humans, Oxidative Stress, Signal Transduction, Transcription Factors metabolism, Gene Regulatory Networks, Hydrogen Peroxide pharmacology, Peroxidases metabolism
- Abstract
Significance: Decrypting the cellular response to oxidative stress relies on a comprehensive understanding of the redox signaling pathways stimulated under oxidizing conditions. Redox signaling events can be divided into upstream sensing of oxidants, midstream redox signaling of protein function, and downstream transcriptional redox regulation. Recent Advances: A more and more accepted theory of hydrogen peroxide (H
2 O2 ) signaling is that of a thiol peroxidase redox relay, whereby protein thiols with low reactivity toward H2 O2 are instead oxidized through an oxidative relay with thiol peroxidases., Critical Issues: These ultrareactive thiol peroxidases are the upstream redox sensors, which form the first cellular port of call for H2 O2 . Not all redox-regulated interactions between thiol peroxidases and cellular proteins involve a transfer of oxidative equivalents, and the nature of redox signaling is further complicated through promiscuous functions of redox-regulated "moonlighting" proteins, of which the precise cellular role under oxidative stress can frequently be obscured by "polygamous" interactions. An ultimate goal of redox signaling is to initiate a rapid response, and in contrast to prokaryotic oxidant-responsive transcription factors, mammalian systems have developed redox signaling pathways, which intersect both with kinase-dependent activation of transcription factors, as well as direct oxidative regulation of transcription factors through peroxiredoxin (Prx) redox relays., Future Directions: We highlight that both transcriptional regulation and cell fate can be modulated either through oxidative regulation of kinase pathways, or through distinct redox-dependent associations involving either Prxs or redox-responsive moonlighting proteins with functional promiscuity. These protein associations form systems of crossregulatory networks with multiple nodes of potential oxidative regulation for H2 O2 -mediated signaling.- Published
- 2019
- Full Text
- View/download PDF
7. Self-protection of cytosolic malate dehydrogenase against oxidative stress in Arabidopsis.
- Author
-
Huang J, Niazi AK, Young D, Rosado LA, Vertommen D, Bodra N, Abdelgawwad MR, Vignols F, Wei B, Wahni K, Bashandy T, Bariat L, Van Breusegem F, Messens J, and Reichheld JP
- Subjects
- Arabidopsis enzymology, Cytosol metabolism, Hydrogen Peroxide metabolism, Oxidation-Reduction, Arabidopsis metabolism, Malate Dehydrogenase metabolism, Oxidative Stress
- Abstract
Plant malate dehydrogenase (MDH) isoforms are found in different cell compartments and function in key metabolic pathways. It is well known that the chloroplastic NADP-dependent MDH activities are strictly redox regulated and controlled by light. However, redox dependence of other NAD-dependent MDH isoforms have been less studied. Here, we show by in vitro biochemical characterization that the major cytosolic MDH isoform (cytMDH1) is sensitive to H2O2 through sulfur oxidation of cysteines and methionines. CytMDH1 oxidation affects the kinetics, secondary structure, and thermodynamic stability of cytMDH1. Moreover, MS analyses and comparison of crystal structures between the reduced and H2O2-treated cytMDH1 further show that thioredoxin-reversible homodimerization of cytMDH1 through Cys330 disulfide formation protects the protein from overoxidation. Consistently, we found that cytosolic thioredoxins interact specifically with cytMDH in a yeast two-hybrid system. Importantly, we also show that cytosolic and chloroplastic, but not mitochondrial NAD-MDH activities are sensitive to H2O2 stress in Arabidopsis. NAD-MDH activities decreased both in a catalase2 mutant and in an NADP-thioredoxin reductase mutant, emphasizing the importance of the thioredoxin-reducing system to protect MDH from oxidation in vivo. We propose that the redox switch of the MDH activity contributes to adapt the cell metabolism to environmental constraints.
- Published
- 2018
- Full Text
- View/download PDF
8. Erratum: Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis.
- Author
-
Bodra N, Young D, Rosado LA, Pallo A, Wahni K, De Proft F, Huang J, Van Breusegem F, and Messens J
- Abstract
This corrects the article DOI: 10.1038/srep42494.
- Published
- 2017
- Full Text
- View/download PDF
9. Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis.
- Author
-
Bodra N, Young D, Astolfi Rosado L, Pallo A, Wahni K, De Proft F, Huang J, Van Breusegem F, and Messens J
- Abstract
Dehydroascorbate reductase (DHAR) catalyzes the glutathione (GSH)-dependent reduction of dehydroascorbate and plays a direct role in regenerating ascorbic acid, an essential plant antioxidant vital for defense against oxidative stress. DHAR enzymes bear close structural homology to the glutathione transferase (GST) superfamily of enzymes and contain the same active site motif, but most GSTs do not exhibit DHAR activity. The presence of a cysteine at the active site is essential for the catalytic functioning of DHAR, as mutation of this cysteine abolishes the activity. Here we present the crystal structure of DHAR2 from Arabidopsis thaliana with GSH bound to the catalytic cysteine. This structure reveals localized conformational differences around the active site which distinguishes the GSH-bound DHAR2 structure from that of DHAR1. We also unraveled the enzymatic step in which DHAR releases oxidized glutathione (GSSG). To consolidate our structural and kinetic findings, we investigated potential conformational flexibility in DHAR2 by normal mode analysis and found that subdomain mobility could be linked to GSH binding or GSSG release., Competing Interests: The authors declare no competing financial interests.
- Published
- 2017
- Full Text
- View/download PDF
10. DYn-2 Based Identification of Arabidopsis Sulfenomes.
- Author
-
Akter S, Huang J, Bodra N, De Smet B, Wahni K, Rombaut D, Pauwels J, Gevaert K, Carroll K, Van Breusegem F, and Messens J
- Subjects
- Arabidopsis drug effects, Arabidopsis genetics, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Avidin chemistry, Biotin chemistry, Cell Compartmentation, Cell Culture Techniques, Hydrogen Peroxide metabolism, Hydrogen Peroxide pharmacology, Molecular Sequence Annotation, Organelles drug effects, Organelles metabolism, Oxidation-Reduction, Oxidative Stress, Proteomics methods, Signal Transduction, Sulfenic Acids chemistry, Arabidopsis metabolism, Arabidopsis Proteins analysis, Cyclohexanones chemistry, Molecular Probes chemistry, Protein Processing, Post-Translational, Sulfenic Acids metabolism
- Abstract
Identifying the sulfenylation state of stressed cells is emerging as a strategic approach for the detection of key reactive oxygen species signaling proteins. Here, we optimized an in vivo trapping method for cysteine sulfenic acids in hydrogen peroxide (H2O2) stressed plant cells using a dimedone based DYn-2 probe. We demonstrated that DYn-2 specifically detects sulfenylation events in an H2O2 dose- and time-dependent way. With mass spectrometry, we identified 226 sulfenylated proteins after H2O2 treatment of Arabidopsis cells, residing in the cytoplasm (123); plastid (68); mitochondria (14); nucleus (10); endoplasmic reticulum, Golgi and plasma membrane (7) and peroxisomes (4). Of these, 123 sulfenylated proteins have never been reported before to undergo cysteine oxidative post-translational modifications in plants. All in all, with this DYn-2 approach, we have identified new sulfenylated proteins, and gave a first glance on the locations of the sulfenomes of Arabidopsis thaliana., (© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2015
- Full Text
- View/download PDF
11. Sulfenome mining in Arabidopsis thaliana.
- Author
-
Waszczak C, Akter S, Eeckhout D, Persiau G, Wahni K, Bodra N, Van Molle I, De Smet B, Vertommen D, Gevaert K, De Jaeger G, Van Montagu M, Messens J, and Van Breusegem F
- Subjects
- Arabidopsis drug effects, Arabidopsis Proteins metabolism, Cysteine metabolism, Glutathione metabolism, Hydrogen Peroxide pharmacology, Kinetics, Models, Biological, Multiprotein Complexes metabolism, Oxidation-Reduction drug effects, Oxidative Stress drug effects, Protein Binding drug effects, Proteolysis drug effects, Recombinant Fusion Proteins metabolism, Signal Transduction drug effects, Time Factors, Arabidopsis metabolism, Metabolome drug effects, Sulfenic Acids metabolism
- Abstract
Reactive oxygen species (ROS) have been shown to be potent signaling molecules. Today, oxidation of cysteine residues is a well-recognized posttranslational protein modification, but the signaling processes steered by such oxidations are poorly understood. To gain insight into the cysteine thiol-dependent ROS signaling in Arabidopsis thaliana, we identified the hydrogen peroxide (H2O2)-dependent sulfenome: that is, proteins with at least one cysteine thiol oxidized to a sulfenic acid. By means of a genetic construct consisting of a fusion between the C-terminal domain of the yeast (Saccharomyces cerevisiae) AP-1-like (YAP1) transcription factor and a tandem affinity purification tag, we detected ∼ 100 sulfenylated proteins in Arabidopsis cell suspensions exposed to H2O2 stress. The in vivo YAP1-based trapping of sulfenylated proteins was validated by a targeted in vitro analysis of dehydroascorbate reductase2 (DHAR2). In DHAR2, the active site nucleophilic cysteine is regulated through a sulfenic acid-dependent switch, leading to S-glutathionylation, a protein modification that protects the protein against oxidative damage.
- Published
- 2014
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.