23 results on '"Blindheim S"'
Search Results
2. Desmozoon lepeophtherii (microsporidian) infections and pancreas disease (PD) outbreaks in farmed Atlantic salmon (Salmo salar L.)
- Author
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Gunnarsson, G.S., Blindheim, S., Karlsbakk, E., Plarre, H., Imsland, A.K., Handeland, S., Sveier, H., and Nylund, A.
- Published
- 2017
- Full Text
- View/download PDF
3. Experimental challenge of Atlantic salmon Salmo salar using clones of Paramoeba perurans, P. pemaquidensis and Tetramitus sp.
- Author
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Nylund, A, primary, Røed, M, additional, Blindheim, S, additional, Trösse, C, additional, and Andersen, L, additional
- Published
- 2021
- Full Text
- View/download PDF
4. Overview of sun photometer measurements of aerosol properties in Scandinavia and Svalbard
- Author
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Toledano, C., Cachorro, V.E., Gausa, M., Stebel, K., Aaltonen, V., Berjón, A., Ortiz de Galisteo, J.P., Frutos, A.M. de, Bennouna, Y., Blindheim, S., Myhre, C.L., Zibordi, G., Wehrli, C., Kratzer, S., Hakansson, B., Carlund, T., Leeuw, G. de, Herber, A., and Torres, B.
- Subjects
Sun photometer ,Arctic ,Urban Development ,Climate ,Earth & Environment ,Scandinavia ,CAS - Climate, Air and Sustainability ,Built Environment ,EELS - Earth, Environmental and Life Sciences ,Aerosol - Abstract
An overview on the data of columnar aerosol properties measured in Northern Europe is provided. Apart from the necessary data gathered in the Arctic, the knowledge of the aerosol loading in nearby areas (e.g. sub-Arctic) is of maximum interest to achieve a correct analysis of the Arctic aerosols and transport patterns. This work evaluates data from operational sites with sun photometer measurements belonging either to national or international networks (AERONET, GAW-PFR) and programs conducted in Scandinavia and Svalbard. We enumerate a list of sites, measurement type and periods together with observed aerosol properties. An evaluation and analysis of aerosol data was carried out with a review of previous results as well. Aerosol optical depth (AOD) and ångström exponent (AE) are the current parameters with sufficient long-term records for a first evaluation of aerosol properties. AOD (500 nm) ranges from 0.08 to 0.10 in Arctic and sub-Arctic sites (Ny-ålesund: 0.09; Andenes: 0.10; Sodankylä: 0.08), and it is somewhat higher in more populated areas in Southern Scandinavia (AOD about 0.10-0.12 at 500 nm). On the Norwegian coast, aerosols show larger mean size (AE = 1.2 at Andenes) than in Finland, with continental climate (AE = 1.5 at Sodankylä). Columnar particle size distributions and related parameters derived from inversion of sun/sky radiances were also investigated. This work makes special emphasis in the joint and collaborative effort of the various groups from different countries involved in this study. Part of the measurements presented here were involved in the IPY projects Polar-AOD and POLARCAT. © 2011 Elsevier Ltd.
- Published
- 2012
5. Tilførselsprogrammet 2010. Atmosfærisk tilførsel - overvåking på Andøya
- Author
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Blindheim, S., Aas, W., Manø, S., and Krognes, T.
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Andøyaobservatoriet ,Miljøovervåkning ,Langtransportert forurensning ,Miljøgifter ,Atmosfære og klima - Abstract
I denne rapporten presenteres det første årssettet (2010) med atmosfæriske tilførsler fra det nyetablerte observatoriet på Andøya. Overvåkingsprogrammet inkluderer organiske miljøgifter, hovedkomponenter og sporelementer samt målinger av CO/CO2. Observasjonene viser at de høyeste episodene kommer når luft transporteres østfra. Når man sammenligner nivåene på Andøya med hva som observeres på andre norske stasjoner, er det relativt høye svovelkonsentrasjoner muligens pga påvirkning fra Kolahalvøya. En del organiske miljøgifter er overraskende en del lavere enn på Zeppelin på Svalbard og dette kan komme av at sistnevnte muligens er påvirket av utslipp fra de nærliggende havområdene. In this report the first annual dataset of atmospheric composition is reported from the new observatory establish at Andøya. The Monitoring includes measurements of organic contaminant, trace elements, main components and CO/CO2. The highest episodes are generally seen when air is transported from east. When comparing the level at Andøya with other observations in Norway, the sulphur level is relatively high probably due to influence of emissions in the Kola peninsula. The level of several organic pollutants is surprisingly somewhat lower than what’s observed at Zeppelin in Svalbard. This may be due to the possibility that the latter site is influence by emissions from the nearby ocean areas.
- Published
- 2011
6. Aerosol optical properties in Northern Norway and Svalbard
- Author
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Chen, Y.-C., primary, Hamre, B., additional, Frette, Ø., additional, Blindheim, S., additional, Stebel, K., additional, Sobolewski, P., additional, Toledano, C., additional, and Stamnes, J. J., additional
- Published
- 2013
- Full Text
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7. Aerosols in polar regions : A historical overview based on optical depth and in situ observations
- Author
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Tomasi, C., Vitale, V., Lupi, A., Di Carmine, C., Campanelli, M., Herber, A., Treffeisen, R., Stone, R. S., Andrews, E., Sharma, S., Radionov, V., von Hoyningen-Huene, W., Stebel, K., Hansen, G. H., Myhre, C. L., Wehrli, C., Aaltonen, V., Lihavainen, H., Virkkula, A., Hillamo, R., Ström, Johan, Toledano, C., Cachorro, V. E., Ortiz, P., de Frutos, A. M., Blindheim, S., Frioud, M., Gausa, M., Zielinski, T., Petelski, T., Yamanouchi, T., Tomasi, C., Vitale, V., Lupi, A., Di Carmine, C., Campanelli, M., Herber, A., Treffeisen, R., Stone, R. S., Andrews, E., Sharma, S., Radionov, V., von Hoyningen-Huene, W., Stebel, K., Hansen, G. H., Myhre, C. L., Wehrli, C., Aaltonen, V., Lihavainen, H., Virkkula, A., Hillamo, R., Ström, Johan, Toledano, C., Cachorro, V. E., Ortiz, P., de Frutos, A. M., Blindheim, S., Frioud, M., Gausa, M., Zielinski, T., Petelski, T., and Yamanouchi, T.
- Abstract
Large sets of filtered actinometer, filtered pyrheliometer and Sun photometer measurements have been carried out over the past 30 years by various groups at different Arctic and Antarctic sites and for different time periods. They were examined to estimate ensemble average, long-term trends of the summer background aerosol optical depth AOD(500 nm) in the polar regions ( omitting the data influenced by Arctic haze and volcanic eruptions). The trend for the Arctic was estimated to be between -1.6% and -2.0% per year over 30 years, depending on location. No significant trend was observed for Antarctica. The time patterns of AOD( 500 nm) and angstrom ngstrom's parameters a and beta measured with Sun photometers during the last 20 years at various Arctic and Antarctic sites are also presented. They give a measure of the large variations of these parameters due to El Chichon, Pinatubo, and Cerro Hudson volcanic particles, Arctic haze episodes most frequent in winter and spring, and the transport of Asian dust and boreal smokes to the Arctic region. Evidence is also shown of marked differences between the aerosol optical parameters measured at coastal and high-altitude sites in Antarctica. In situ optical and chemical composition parameters of aerosol particles measured at Arctic and Antarctic sites are also examined to achieve more complete information on the multimodal size distribution shape parameters and their radiative properties. A characterization of aerosol radiative parameters is also defined by plotting the daily mean values of a as a function of AOD( 500 nm), separately for the two polar regions, allowing the identification of different clusters related to fifteen aerosol classes, for which the spectral values of complex refractive index and single scattering albedo were evaluated., authorCount :31
- Published
- 2007
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8. Aerosols in Polar Regions: An Historical Overview on the Basis of Optical Depth and In-Situ Observations
- Author
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Tomasi, C., Vitale, V., Lupi, A., Di Carmine, C., Campaneli, M., Herber, A., Treffeisen, R., Stone, R.S., Andrews, E., Sharma, S., Radionov, V., von Hoyningen-Huene, W., Stebel, K., Hansen, G.H., Myhre, C.L., Wehrli, C., Aaltonen, V., Lihavainen, H., Virkkula, A., Hillamo, R., Ström, Johan, Toledano, C., Cachorro, V.E., Oritz, P., de Frutos, A.M., Blindheim, S., Frioud, M., Gausa, M., Zielinski, T., Petelski, T., Yamanouchi, T., Tomasi, C., Vitale, V., Lupi, A., Di Carmine, C., Campaneli, M., Herber, A., Treffeisen, R., Stone, R.S., Andrews, E., Sharma, S., Radionov, V., von Hoyningen-Huene, W., Stebel, K., Hansen, G.H., Myhre, C.L., Wehrli, C., Aaltonen, V., Lihavainen, H., Virkkula, A., Hillamo, R., Ström, Johan, Toledano, C., Cachorro, V.E., Oritz, P., de Frutos, A.M., Blindheim, S., Frioud, M., Gausa, M., Zielinski, T., Petelski, T., and Yamanouchi, T.
- Published
- 2007
9. Aerosols in Polar Regions
- Author
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Tomasi, C., Vitale, V., Lupi, A., Di Carmine, C., Campanelli, M., Herber, Andreas, Treffeisen, Renate, Stone, R. S., Andrews, E., Sharma, S., Radionov, V., von Hoyningen-Huene, Wolfgang, Stebel, K., Hansen, G. H., Myhre, C. L., Wehrli, C., Aaltonen, V., Lihavainen, H., Virkkula, A., Hillamo, R., Ström, J., Toledano, C., Cachorro, V. E., Ortiz, P., De Frutos, A. M., Blindheim, S., Frioud, M., Gausa, M., Zielinski, T., Petelski, T., Yamanouchi, T., Tomasi, C., Vitale, V., Lupi, A., Di Carmine, C., Campanelli, M., Herber, Andreas, Treffeisen, Renate, Stone, R. S., Andrews, E., Sharma, S., Radionov, V., von Hoyningen-Huene, Wolfgang, Stebel, K., Hansen, G. H., Myhre, C. L., Wehrli, C., Aaltonen, V., Lihavainen, H., Virkkula, A., Hillamo, R., Ström, J., Toledano, C., Cachorro, V. E., Ortiz, P., De Frutos, A. M., Blindheim, S., Frioud, M., Gausa, M., Zielinski, T., Petelski, T., and Yamanouchi, T.
- Published
- 2007
10. Overview of sun photometer measurements of aerosol properties in Scandinavia and Svalbard
- Author
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Toledano, C., primary, Cachorro, V.E., additional, Gausa, M., additional, Stebel, K., additional, Aaltonen, V., additional, Berjón, A., additional, Ortiz de Galisteo, J.P., additional, de Frutos, A.M., additional, Bennouna, Y., additional, Blindheim, S., additional, Myhre, C.L., additional, Zibordi, G., additional, Wehrli, C., additional, Kratzer, S., additional, Hakansson, B., additional, Carlund, T., additional, de Leeuw, G., additional, Herber, A., additional, and Torres, B., additional
- Published
- 2012
- Full Text
- View/download PDF
11. Aerosol characterization at the sub-Arctic site Andenes (69°N, 16°E), by the analysis of columnar optical properties
- Author
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Rodríguez, E., primary, Toledano, C., additional, Cachorro, V. E., additional, Ortiz, P., additional, Stebel, K., additional, Berjón, A., additional, Blindheim, S., additional, Gausa, M., additional, and de Frutos, A. M., additional
- Published
- 2011
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12. Characterization of Sub‐Arctic Aerosols at ALOMAR (69 N,16 E) using Sun Photometer Measurements (2002–2007)
- Author
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Rodríguez, E., primary, Cachorro, V., additional, Toledano, C., additional, Berjón, A., additional, Mogo, S., additional, Montilla, E., additional, Torres, B., additional, Blindheim, S., additional, de Frutos, A., additional, Gausa, M., additional, and Stebel, K., additional
- Published
- 2009
- Full Text
- View/download PDF
13. Aerosols in polar regions: A historical overview based on optical depth and in situ observations
- Author
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Tomasi, C., primary, Vitale, V., additional, Lupi, A., additional, Di Carmine, C., additional, Campanelli, M., additional, Herber, A., additional, Treffeisen, R., additional, Stone, R. S., additional, Andrews, E., additional, Sharma, S., additional, Radionov, V., additional, von Hoyningen‐Huene, W., additional, Stebel, K., additional, Hansen, G. H., additional, Myhre, C. L., additional, Wehrli, C., additional, Aaltonen, V., additional, Lihavainen, H., additional, Virkkula, A., additional, Hillamo, R., additional, Ström, J., additional, Toledano, C., additional, Cachorro, V. E., additional, Ortiz, P., additional, de Frutos, A. M., additional, Blindheim, S., additional, Frioud, M., additional, Gausa, M., additional, Zielinski, T., additional, Petelski, T., additional, and Yamanouchi, T., additional
- Published
- 2007
- Full Text
- View/download PDF
14. Characterization of Sub-Arctic Aerosols at ALOMAR (69 N,16 E) using Sun Photometer Measurements (2002–2007).
- Author
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Rodríguez, E., Cachorro, V., Toledano, C., Berjón, A., Mogo, S., Montilla, E., Torres, B., Blindheim, S., de Frutos, A., Gausa, M., and Stebel, K.
- Subjects
AEROSOLS ,METEOROLOGICAL optics ,OPTICAL properties ,AIR pollution ,PHOTOMETRY ,SPECTRORADIOMETER - Abstract
The Atmospheric Optics Group (GOA-UVA) at the University of Valladolid has carried out seven field campaigns to investigate Sub-Arctic aerosols. The measurements have been made between 2002 and 2007 at the Arctic Lidar Observatory for Middle Atmosphere Research (ALOMAR), Ando\ya Rocket Range, Norway (69 N, 16 E, elev. 380 m) in order to investigate the main characteristics of the columnar aerosol properties in this area. Different sun photometers and spectroradiometers have been used for this purpose. The main systems have been sun photometer from Cimel. From the measurements we can retrieve the aerosol optical depth (AOD) and the derived Ångström exponent (alpha) and provide information on pollution and Arctic haze events in the region. The optical properties are analyzed jointly with air mass back trajectories in order to investigate the prevailing aerosol types and determine the origin of the aerosols. Routine measurements carried out since 2006, in collaboration with NILU and ALOMAR, will provide better statistic and will lead to an improved characterization of Sub-Arctic aerosols in the near future. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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15. Aerosol optical properties in Northern Norway and Svalbard.
- Author
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Chen, Y. C., Hamre, B., Frette, Ø., Blindheim, S., Stebel, K., Sobolewski, P., Toledano, C., and Stamnes, J. J.
- Subjects
ATMOSPHERIC aerosol measurement ,OPTICAL properties of atmospheric aerosols ,ATMOSPHERIC aerosols - Abstract
\We present comparisons between estimates of the aerosol optical thickness and the Ångström exponent in Northern Norway and Svalbard based on data from AERONET (Aerosol Robotic Network) stations at Andenes (69.28° N, 16.01° E, 379m altitude) and Hornsund (77.00° N, 15.56° E, 10m altitude) for the period 2008-2011. The four-year annual mean values for the aerosol optical thickness at 500nm °(500) at Andenes and Hornsund both were 0.10. At Hornsund, there was less variation of the monthly mean value of °(500) than at Andenes. The annual mean values of the Ångström exponent ° at Andenes and Hornsund were 1.25 and 1.37, respectively. At Andenes and Hornsund ° was found to be larger than 1.1 in 64% and 86% of the observations, respectively, indicating that fine-mode particles were dominating at both sites. Both sites had a similar seasonal variation of the aerosol size distribution although one site is in an arctic area while the other site is in a sub-arctic area. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
16. Aerosol characterization at the sub-Arctic site Andenes (69°N, 16°E), by the analysis of columnar optical properties.
- Author
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Rodríguez, E., Toledano, C., Cachorro, V. E., Ortiz, P., Stebel, K., Berjón, A., Blindheim, S., Gausa, M., and de Frutos, A. M.
- Published
- 2012
- Full Text
- View/download PDF
17. Growth characteristics and morphology of Paramoeba perurans from Atlantic salmon Salmo salar L. and ballan wrasse Labrus bergylta in Norway.
- Author
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Blindheim S, Andersen L, Trösse C, Karlsbakk E, and Nylund A
- Subjects
- Animals, Real-Time Polymerase Chain Reaction, Gills, Salmo salar, Amebiasis veterinary, Amebiasis epidemiology, Perciformes, Fish Diseases epidemiology
- Abstract
Background: Paramoeba perurans is the causative agent of amoebic gill disease (AGD) in Atlantic salmon Salmo salar L. and many other farmed marine fish species worldwide. The first cases of AGD in Norway were reported in 2006, and it has subsequently become established as a significant gill disease that affects the country's salmonid aquaculture industry. Despite several decades of research on AGD, there is still a lack of knowledge of the biology of P. perurans and its interactions with its hosts and the environment., Methods: The growth and morphology of 10 clonal isolates of P. perurans were studied. The isolates were from farmed Atlantic salmon and ballan wrasse that had been obtained from different sites along the Norwegian coast between 2013 and 2015. The morphology and population growth patterns of these clonal amoeba isolates were examined in vitro using light microscopy and real-time reverse transcription polymerase chain reaction under a range of temperatures (4, 12, 15 and 21 °C) and salinities (20, 25, 30 and 34 ‰)., Results: We found distinct morphological differences between both locomotive and floating forms of the amoeba isolates. The locomotive amoebae of the clonal isolates varied in size (area) from 453 µm
2 to 802 µm2 . There were differences in the growth patterns of the clonal amoeba isolates under similar conditions, and in their responses to variations in temperature and salinity. While most of the isolates grew well at salinities of 25-34 ‰, a significant reduction in growth was seen at 20 ‰. Most of the amoeba isolates grew well at 12 °C and 15 °C. At 4 °C, amoebae grew slower and, in contrast to the other temperatures, no extended pseudopodia could be seen in their floating form. The isolates seemed to reach a plateau phase faster at 21 °C, with a higher number of smaller, rounded amoebae., Conclusions: The differences observed here between clonal isolates of P. perurans should be further examined in experimental in vivo challenge studies, as they may be of relevance to the virulence and proliferation potential of this amoeba on gills. Potential differences in virulence within P. perurans could have implications for management strategies for AGD., (© 2023. The Author(s).)- Published
- 2023
- Full Text
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18. Method for cryopreservation of Paramoeba perurans.
- Author
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Tröße C, Kindt M, Blindheim S, Andersen L, and Nylund A
- Subjects
- Amebiasis diagnosis, Amebiasis parasitology, Amebiasis veterinary, Cryopreservation methods, Fish Diseases diagnosis, Fish Diseases parasitology, Norway, Amoebozoa physiology, Cryopreservation veterinary
- Abstract
Paramoeba perurans causes amoebic gill disease (AGD), which is a major problem in aquaculture worldwide. The parasite can be cultured in vitro, but to this date, no method for long-term storage of the clones exists. In this study, we describe a method for cryopreservation of Paramoeba perurans. The method was successfully employed on four out the five clones we tested. The thawing success rate, that is the percentage of successfully thawed vials relative to the total number of vials that were thawed, differed for the clones and ranged from 25% to 100%. The age of the clones seemed to have a negative impact on the ability to survive cryopreservation., (© 2020 The Authors. Journal of Fish Diseases published by John Wiley & Sons Ltd.)
- Published
- 2021
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19. Atlantic salmon Salmo salar and ballan wrasse Labrus bergylta display different susceptibility to clonal strains of Paramoeba perurans.
- Author
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Dahle OMV, Blindheim SH, Nylund A, Karlsbakk E, Breck O, Glosvik H, and Andersen L
- Subjects
- Animals, Gills, Norway, Amebiasis veterinary, Fish Diseases, Perciformes, Salmo salar
- Abstract
Amoebic gill disease (AGD), caused by the marine amoeba Paramoeba perurans, is an important disease of farmed Atlantic salmon Salmo salar L. in Norway. The use of wrasse as cleaner fish in salmon net pens raises questions about interspecies transmission of pathogens such as P. perurans. In this study, cohabitant transmission of clonal isolates of P. perurans between Atlantic salmon and ballan wrasse Labrus bergylta Ascanius was examined, using isolates originating from both salmon and wrasse. The challenges resulted in AGD in both species, although less severely in wrasse. The amoeba isolate originating from ballan wrasse was more virulent than that originating from salmon, suggesting P. perurans strain-related virulence differences. The isolate originating from salmon showed limited proliferation in bath-challenged wrasse and salmon, and limited transfer to cohabitants. Our results support previous observations suggesting that salmon may be more susceptible to P. perurans and AGD than ballan wrasse. Treatment of P. perurans infection in wrasse is challenging, as it is a strictly marine fish species. In this study, brackish water (<15‰ seawater) treatment of AGD affected salmon and wrasse was examined. Both salmon and wrasse were treated for short periods (3 h and 24 h), and treatment of wrasse over longer periods (3-5 d) was also examined. Short exposure to brackish water was not enough to remove P. perurans, although the 24 h treatment reduced amoeba levels. It was not possible to culture or detect P. perurans from wrasse exposed to brackish water for 3 d, suggesting that this treatment would be effective in controlling the parasite.
- Published
- 2020
- Full Text
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20. Genotyping of Candidatus Syngnamydia salmonis (chlamydiales; Simkaniaceae) co-cultured in Paramoeba perurans (amoebozoa; Paramoebidae).
- Author
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Nylund A, Pistone D, Trösse C, Blindheim S, Andersen L, and Plarre H
- Subjects
- Amoebozoa growth & development, Animals, Bacterial Infections, Chlamydiales growth & development, Coculture Techniques, Fish Diseases microbiology, Genotype, Gills microbiology, Norway, RNA, Ribosomal, 16S genetics, Salmo salar microbiology, Amoebozoa microbiology, Chlamydiales genetics, Chlamydiales isolation & purification
- Abstract
Candidatus Syngnamydia salmonis (Chlamydiales, Simkaniaceae) was described as an epitheliocystis-causing bacterium from the gills of Atlantic salmon (Salmo salar) in Norway. A bacterium showing 99.2% 16S rRNA identity to Cand. S. salmonis is able to multiply in Paramoeba perurans and based on the classification criteria this bacterium could represent the same species as Cand. S. salmonis. Sequencing the genome of the cultured bacterium has made it possible to fulfill the minimal standards for genetic characterization of species within the order Chlamydiales. The complete rRNA genes, the amino acid sequences of SucA, PepF, Adk, HemL, DnaA, FtsK and FabI, are presented in addition to the morphology of the Chlamydia-like morphs in the cytoplasm of P. perurans.
- Published
- 2018
- Full Text
- View/download PDF
21. Aerosol optical properties in Northern Norway and Svalbard.
- Author
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Chen YC, Hamre B, Frette Ø, Muyimbwa D, Blindheim S, Stebel K, Sobolewski P, Toledano C, and Stamnes JJ
- Abstract
We present comparisons between estimates of the aerosol optical thickness and the Ångström exponent in Northern Norway and Svalbard based on data from AERONET (Aerosol Robotic Network) stations at Andenes (69.28°N, 16.01°E, 379 m altitude) and Hornsund (77.00°N, 15.56°E, 10 m altitude) for the period 2008-2013. The five/six-year annual mean values for the aerosol optical thickness at 500 nm τ(500) at Andenes and Hornsund both were 0.09. At Hornsund, there was less variation of the monthly mean value of τ(500) than at Andenes. The annual mean values of the Ångström exponent α at Andenes and Hornsund were 1.29 and 1.34, respectively. At Andenes and Hornsund α was found to be larger than 1.1 in 68% and 84% of the observations, respectively, indicating that fine-mode particles were dominating at both sites. Both sites had a similar aerosol size distribution during summer although one site is in an arctic area while the other site is in a subarctic area.
- Published
- 2016
- Full Text
- View/download PDF
22. A new aquareovirus causing high mortality in farmed Atlantic halibut fry in Norway.
- Author
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Blindheim S, Nylund A, Watanabe K, Plarre H, Erstad B, and Nylund S
- Subjects
- Animals, Fish Diseases epidemiology, Fish Diseases mortality, Norway epidemiology, Phylogeny, Reoviridae genetics, Reoviridae Infections epidemiology, Reoviridae Infections mortality, Reoviridae Infections virology, Aquaculture, Fish Diseases virology, Flounder, Reoviridae isolation & purification, Reoviridae Infections veterinary
- Abstract
A new aquareovirus was isolated from cultured Atlantic halibut (Hippoglossus hippoglossus) fry at a facility where massive mortalities had occurred during the start-feeding phase. The same virus was also detected in juveniles (about 10 grams) of the 2013 generation at two other production sites, but not in larger fish from generations 2007-2012. The virus replicated in BF-2 and CHSE-214 cell cultures and produced syncytia and plaque-like cytopathic effects. This Atlantic halibut reovirus (AHRV) was associated with necrosis of the liver and pancreas, syncytium formation in these tissues, and distinct viroplasm areas within the syncytium in halibut fry. Transmission electron microscopy revealed that the viroplasm contained virions, non-enveloped, icosahedral particles approximately 70 nm in diameter with a double capsid layer, amorphous material, and tubular structures. The RNA-dependent RNA polymerase (RdRp) gene from the AHRV isolates showed the highest amino acid sequence identity (80 %) to an isolate belonging to the species Aquareovirus A, Atlantic salmon reovirus TS (ASRV-TS). A partial sequence from the putative fusion-associated small transmembrane (FAST) protein of AHRV was obtained, and this sequence showed the highest amino acid sequence identity (46.8 %) to Green River Chinook virus which is an unassigned member of the genus Aquareovirus, while a comparison with isolates belonging to the species Aquareovirus A showed <33 % identity. A proper assessment of the relationship of AHRV to all members of the genus Aquareovirus, however, is hampered by the absence of genetic data from members of several Aquareovirus species. AHRV is the first aquareovirus isolated from a marine coldwater fish species and the second reovirus detected in farmed fish in Norway. A similar disease of halibut fry, as described in this paper, has also been described in halibut production facilities in Canada and Scotland.
- Published
- 2015
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23. Genomic characterization and phylogenetic position of two new species in Rhabdoviridae infecting the parasitic copepod, salmon louse (Lepeophtheirus salmonis).
- Author
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Økland AL, Nylund A, Øvergård AC, Blindheim S, Watanabe K, Grotmol S, Arnesen CE, and Plarre H
- Subjects
- 3' Untranslated Regions, 5' Untranslated Regions, Animals, Base Sequence, Female, Fish Diseases virology, High-Throughput Nucleotide Sequencing, Rhabdoviridae ultrastructure, Viral Proteins chemistry, Viral Proteins genetics, Copepoda virology, Genome, Viral, Genomics, Phylogeny, Rhabdoviridae classification, Rhabdoviridae genetics
- Abstract
Several new viruses have emerged during farming of salmonids in the North Atlantic causing large losses to the industry. Still the blood feeding copepod parasite, Lepeophtheirus salmonis, remains the major challenge for the industry. Histological examinations of this parasite have revealed the presence of several virus-like particles including some with morphologies similar to rhabdoviruses. This study is the first description of the genome and target tissues of two new species of rhabdoviruses associated with pathology in the salmon louse. Salmon lice were collected at different Atlantic salmon (Salmo salar) farming sites on the west coast of Norway and prepared for histology, transmission electron microscopy and Illumina sequencing of the complete RNA extracted from these lice. The nearly complete genomes, around 11,600 nucleotides encoding the five typical rhabdovirus genes N, P, M, G and L, of two new species were obtained. The genome sequences, the putative protein sequences, and predicted transcription strategies for the two viruses are presented. Phylogenetic analyses of the putative N and L proteins indicated closest similarity to the Sigmavirus/Dimarhabdoviruses cluster, however, the genomes of both new viruses are significantly diverged with no close affinity to any of the existing rhabdovirus genera. In situ hybridization, targeting the N protein genes, showed that the viruses were present in the same glandular tissues as the observed rhabdovirus-like particles. Both viruses were present in all developmental stages of the salmon louse, and associated with necrosis of glandular tissues in adult lice. As the two viruses were present in eggs and free-living planktonic stages of the salmon louse vertical, transmission of the viruses are suggested. The tissues of the lice host, Atlantic salmon, with the exception of skin at the attachment site for the salmon louse chalimi stages, were negative for these two viruses.
- Published
- 2014
- Full Text
- View/download PDF
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