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The study of heterotrophic protists in the ocean is still in its early stages, compared to other microorganisms such as bacteria, archaea, and photoautotrophic protists. Labyrinthulomycetes protists (LP) are a type of unicellular protists that are widely distributed in global waters and have the potential to produce high-value products. In this study, the abundance, diversity, and community structure of LP in the coastal zone of Hainan Island in the South China Sea were investigated through quantitative PCR and high-throughput sequencing. The results showed that LP abundance varied by location and depth, with the highest levels (37.3 × 103 copies/L) found in the middle layer offshore and the lowest (0.386 × 103 copies/L) in the bottom layer offshore. The middle layer (chlorophyll maximum layer) had higher LP abundance both inshore and offshore than the surface and bottom layers. Interestingly, the highest LP richness and diversity was found in the inshore bottom. There was a significant difference in LP abundance between the offshore surface and bottom layers. The LP community was dominated by the genus Aplanochytrium, and four different ecotypes were identified. Additionally, the genus Aurantiochytrium had different cooperative and competitive strategies with bacteria in different habitats. This study sheds light on the abundance and community structure of LP in the coastal zone of Hainan Island, explores the potential interactions between LP and bacterial populations, and raises questions about the potential differentiation of LP ecotypes.

Labyrinthulomycetes are a group of ubiquitous and diverse unicellular Stramenopiles and have long been known for their vital role in ocean carbon cycling. However, their ecological function from the perspective of organic matter degradation remains poorly understood. This study reports high-quality genomes of two newly isolated Labyrinthulomycetes strains, namely, Botryochytrium sp. strain S-28 and Oblongichytrium sp. strain S-429, and provides molecular analysis of their ecological functions using comparative genomics and a biochemical assay. Our results suggest that Labyrinthulomycetes may occupy multiple ecological niches in marine ecosystems because of the significant differences in gene function among different genera. Certain strains could degrade wheat bran independently by secreting cellulase. The key glycoside hydrolase families (GH1, GH5, and GH9) related to cellulase and the functional domains of carbohydrate-active enzymes (CAZymes) were more enriched in their genomes. This group can actively participate in marine biochemical cycles as decomposers. In contrast, other strains that could not produce cellulase may thrive as "leftover scavengers" and act as a source of nutrients to the higher-trophic-level plankton. In addition, our findings emphasize the dual roles of endoglucanase, acting as both exo- and endoglucanases, in the process of cellulose degradation. Using genomic, biochemical, and phylogenetic analyses, our study provides a broader insight into the nutritional patterns and ecological functions of Labyrinthulomycetes. IMPORTANCE Unicellular heterotrophic eukaryotes are an important component of marine ecosystems. However, their ecological functions and modes of nutrition remain largely unknown. Our current understanding of marine microbial ecology is incomplete without integrating these heterotrophic microeukaryotes into the food web models. This study focuses on the unicellular fungus-like protists Labyrinthulomycetes and provides two high-quality genomes of cellulase-producing Labyrinthulomycetes. Our study uncovers the basis of their cellulase production by deciphering the results of genomic, biochemical, and phylogenetic analyses. This study instigates a further investigation of the molecular mechanism of organic matter utilization by Labyrinthulomycetes in the world's oceans.

Total hip arthroplasty is a surgical option for patients with symptomatic arthritis secondary to severe hip dysplasia. These cases are associated with difficulty in identifying the true acetabulum and achieving stable fixation of the acetabular component is challenging. On the femoral side, femurs in dysplastic hip have increased anteversion, shorter femoral necks and reduced intramedullary canal size. The outcome of total hip arthroplasty in these patients improves with restoration of the anatomical centre of the hip. But restoration of the hip centre in a dysplastic hip can lead to excessive limb lengthening and traction nerve injury. So, additional femoral shortening is necessary to allow hip reduction and to avoid excessive limb lengthening. Sub-trochanteric femoral shortening osteotomy is therefore a viable option and can be extremely useful in addressing the limb length discrepancy, facilitate reduction, equalize limb lengths, and protect the sciatic nerve. We report a case of post-infective dysplasia of hip where sub-trochanteric femoral shortening osteotomy was done along with total hip arthroplasty.

Upwelling, a common oceanographic event, can make great contributions, directly or indirectly, to deep ocean carbon sequestration. However, the extent of its contribution indirectly depends on the composition of microbial communities and the interactions between bacterioplankton and other microorganisms. This study provides insights into the influence of upwelling on bacterioplankton at the whole community level and predicts their potential functional profiles. The α diversity of the bacterial community exhibited no significant differences between the upwelling area and non-upwelling area, while the community composition varied clearly in different habitats. Proteobacteria, Cyanobacteria, Bacteroidota, Firmicutes, and Actinobacteria were the five dominant phyla in all of the habitats. The proportions of members of Firmicutes were increased whereas Cyanobacteria were reduced in upwelling water. However, the percentage of Cyanobacteria was enhanced in the upwelling deep water. Functional genes that are involved in signal transductions, which belong to environmental information processing, were more active in upwelling surface water than in the other habitats. Closer and more complex relationships between bacterioplankton and microbial eukaryotes were found in the upwelling area, which altered with the variation of the external environmental conditions. Cyanobacteria showed a positive correlation with microbial eukaryotes in upwelling deep water. Combined with the high proportions of Cyanobacteria in upwelling deep water, this might be strong evidence that Cyanobacteria contribute to a deep ocean carbon sink. Overall, our study reveals the impacts of upwelling on the bacterial community composition, metabolic functions, and microbial interactions, which are significant to further understanding the carbon sink effects of upwelling.

Fungi are considered terrestrial and oceans are a “fungal desert”. However, with the considerable progress made over past decades, fungi have emerged as morphologically, phylogenetically, and functionally diverse components of the marine water column. Although their communities are influenced by a plethora of environmental factors, the most influential include salinity, temperature, nutrients, and dissolved oxygen, suggesting that fungi respond to local environmental gradients. The biomass carbon of planktonic fungi exhibits spatiotemporal dynamics and can reach up to 1 μg CL−1 of seawater, rivaling bacteria on some occasions, which suggests their active and important role in the water column. In the nutrient-rich coastal water column, there is increasing evidence for their contribution to biogeochemical cycling and food web dynamics on account of their saprotrophic, parasitic, hyper-parasitic, and pathogenic attributes. Conversely, relatively little is known about their function in the open-ocean water column. Interestingly, methodological advances in sequencing and omics approach, the standardization of sequence data analysis tools, and integration of data through network analyses are enhancing our current understanding of the ecological roles of these multifarious and enigmatic members of the marine water column. This review summarizes the current knowledge of the diversity and abundance of planktonic fungi in the world’s oceans and provides an integrated and holistic view of their ecological roles.

A large amount of terrigenous organic matter (TOM) is constantly transported to the deep sea. However, relatively little is known about the microbial mineralization of TOM therein. Our recent in situ enrichment experiments revealed that Vibrio is especially enriched as one of the predominant taxa in the cultures amended with natural plant materials in the deep sea. Yet their role in the mineralization of plant-derived TOM in the deep sea remains largely unknown. Here we isolated Vibrio strains representing dominant members of the enrichments and verified their potential to degrade lignin and xylan. The isolated strains were closely related to Vibrio harveyi, V. alginolyticus, V. diabolicus, and V. parahaemolyticus. Extracellular enzyme assays, and genome and transcriptome analyses revealed diverse peroxidases, including lignin peroxidase (LiP), catalase-peroxidase (KatG), and decolorizing peroxidase (DyP), which played an important role in the depolymerization and oxidation of lignin. Superoxide dismutase was found to likely promote lignin oxidation by supplying H

Thraustochytrids are well-known unicellular heterotrophic marine protists because of their promising ability to accumulate docosahexaenoic acid (DHA). However, the implications of their unique genomic and metabolic features on DHA production remain poorly understood. Here, the effects of chemical and physical culture conditions on the cell mass and DHA production were investigated for a unique thraustochytrid strain, PKU#SW8, isolated from the seawater of Pearl River Estuary. All the tested fermentation parameters showed a significant influence on the cell mass and concentration and yield of DHA. The addition of monosaccharides (fructose, mannose, glucose, or galactose) or glycerol to the culture medium yielded much higher cell mass and DHA concentrations than that of disaccharides and starch. Similarly, organic nitrogen sources (peptone, yeast extract, tryptone, and sodium glutamate) proved to be beneficial in achieving a higher cell mass and DHA concentration. PKU#SW8 was found to grow and accumulate a considerable amount of DHA over wide ranges of KH2PO4 (0.125–1.0 g/L), salinity (0–140% seawater), pH (3–9), temperature (16–36 °C), and agitation (140–230 rpm). With the optimal culture conditions (glycerol, 20 g/L; peptone, 2.5 g/L; 80% seawater; pH 4.0; 28 °C; and 200 rpm) determined based on the shake-flask experiments, the cell mass and concentration and yield of DHA were improved up to 7.5 ± 0.05 g/L, 2.14 ± 0.03 g/L, and 282.9 ± 3.0 mg/g, respectively, on a 5-L scale fermentation. This study provides valuable information about the fermentation conditions of the PKU#SW8 strain and its unique physiological features, which could be beneficial for strain development and large-scale DHA production.

Schizochytrium species are one of the best oleaginous thraustochytrids for high-yield production of docosahexaenoic acid (DHA, 22:6). However, the DHA yields from most wild-type (WT) strains of Schizochytrium are unsatisfactory for large-scale production. In this study, we applied the atmospheric and room-temperature plasma (ARTP) tool to obtain the mutant library of a previously isolated strain of Schizochytrium (i.e., PKU#Mn4). Two rounds of ARTP mutagenesis coupled with the acetyl-CoA carboxylase (ACCase) inhibitor (clethodim)-based screening yielded the mutant A78 that not only displayed better growth, glucose uptake and ACCase activity, but also increased (54.1%) DHA content than that of the WT strain. Subsequent optimization of medium components and supplementation improved the DHA content by 75.5 and 37.2%, respectively, compared with that of mutant A78 cultivated in the unoptimized medium. Interestingly, the ACCase activity of mutant A78 in a medium supplemented with biotin, citric acid or sodium citrate was significantly greater than that in a medium without supplementation. This study provides an effective bioengineering approach for improving the DHA accumulation in oleaginous microbes.

Species of Schizochytrium are well known for their remarkable ability to produce lipids intracellularly. However, during their lipid accumulation, reactive oxygen species (ROS) are generated inevitably as byproducts, which if in excess results in lipid peroxidation. To alleviate such ROS-induced damage, seven different natural antioxidants (ascorbic acid, α-tocopherol, tea extract, melatonin, mannitol, sesamol, and butylated hydroxytoluene) were evaluated for their effects on the lipid accumulation in Schizochytrium sp. PKU#Mn4 using a fractional factorial design. Among the tested antioxidants, mannitol showed the best increment (44.98%) in total fatty acids concentration. However, the interaction effects of mannitol (1 g/L) and ascorbic acid (1 g/L) resulted in 2.26 ± 0.27 g/L and 1.45 ± 0.04 g/L of saturated and polyunsaturated fatty acids (SFA and PUFA), respectively, in batch fermentation. These concentrations were further increased to 7.68 ± 0.37 g/L (SFA) and 5.86 ± 0.03 g/L (PUFA) through fed-batch fermentation. Notably, the interaction effects yielded 103.7% and 49.6% increment in SFA and PUFA concentrations in batch fermentation. The possible mechanisms underlining those increments were an increased maximum growth rate of strain PKU#Mn4, alleviated ROS level, and the differential expression of lipid biosynthetic genes andupregulated catalase gene. This study provides an applicable strategy for improving the accumulation of SFA and PUFA in thraustochytrids by exogenous antioxidants and the underlying mechanisms.

The element stoichiometry of bacteria has received considerable attention because of their significant role in marine ecosystems. However, relatively little is known about the composition of major structural elements of the unicellular heterotrophic protists—thraustochytrids, despite their widely recognized contribution to marine nutrient cycling. Here, we analyze the cell volume and elemental C, N, H, and S cell content of seven cultured thraustochytrids, isolated from different marine habitats, in the exponential and stationary growth phases. We further derive the relationships between the cell volume and elemental C and N content of the cultured thraustochytrids. The cell volumes varied significantly (p &lt, 0.001) among the isolates, with median values of 96.9 and 212.5 μm3 in the exponential and stationary phases, respectively. Our results showed a significantly higher percentage of C (64.0 to 67.5) and H (9.9 to 13.2) but a lower percentage of N (1.86 to 2.16) and S (0.34 to 0.91) in the stationary phase, along with marked variations of C and N fractions among isolates in the exponential phase. The cell C (5.7 to 203.7 pg) and N (0.65 to 6.1 pg) content exhibited a significant (p &lt, 0.001) linear relationship with the cell volume (27.7 to 510 μm3). On further analysis of the relationship across the two growth phases, we found the equation (cell C (pg) = 0.356 × cell volume (μm3) + 20.922) for stationary phase cells more appropriate for C estimation of natural thraustochytrids. This study provides the first experimental evidence of higher cell C density than the current estimate and relatively larger C contribution of thraustochytrids than bacteria to the marine organic pool.

The category of information has been at the heart of notions about citizenship and governance in all modern societies. This paper constructs a genealogy of information and statehood in India by examining how information as a governing idea was brought into play in successive stages of contemporary Indian history. This first section provides a broad account of the creation of the Aadhaar card project—that attempts to uniquely identify every citizen in the country—and briefly reviews the controversies it has generated. The second portion of the paper provides historical snapshots that illustrate information’s constitutive role in previous versions of the Indian state. Thus, the second section looks at the role information played in constituting colonial government, while the next section examines the nationalist phase in pre-independence India to suggest that information functioned as speculative category that allowed freedom fighters to dream and think the nation. In the fourth section I look at the pre-liberalization period of postcolonial history to trace how information becomes a state “good” that is both strictly controlled and sparsely disseminated while at the same time acting as a spur to a specialized sort of economic activity. Finally, in the fifth and concluding section of the paper, I analyze information’s role in emerging India by revisiting the implications of the Aadhaar card in particular and of informational governance in general, by placing both in the context of contemporary political and administrative developments like the National Population Register and the Citizenship Amendment Act.

Marine fungus-like eukaryotic unicellular protists (thraustochytrids) are considered to play an important role in the marine microbial food web. However, their abundance, distribution, and relative biomass in coastal waters have not yet been examined in detail. By using a flow cytometry method (FCM) for the rapid enumeration of thraustochytrids in nearshore and offshore stations along the Gulf of Bohai, China, we herein expanded current knowledge on their ecological significance. The FCM method allows for the rapid detection and quantification of prokaryotic and eukaryotic cells, but is rarely applied to the enumeration of small eukaryotic protists. Epifluorescence microscopy (EpiM) has been commonly used for the direct detection and enumeration of thraustochytrids; however, this method is time-consuming and inapplicable to a large-scale analysis of complex seawater samples. There is no available FCM method to track the abundance and biomass of thraustochytrids in marine habitats. The FCM enumeration of thraustochytrids in seawater samples ranged between 400 and 4,080 cells mL-1 with a biomass range of 8.15-83.96 μg C L-1. The thraustochytrid biomass contributed 10.9% to 98.1% of the total biomass of the heterotrophic microbial community comprising bacterioplankton and thraustochytrids. Their overall abundance in nearshore stations was significantly different from that in offshore stations (P

Terpenoids are major bioactive compounds produced by microalgae and other eukaryotic microorganisms. Mining metabolic potential of marine microalgae for commercial production of terpenoids suggest thraustochytrids as one of the promising cell factories. The identification of potential thraustochytrid strains and relevant laboratory scale bioprocesses has been pursued largely. Further investigations in the improvement of terpenoids biosynthesis expect relevant molecular mechanisms to be understood directing metabolic engineering of the pathways. In this review, fermentative and mechanistic studies to identify key enzymes and pathways that are associated to terpenoids biosynthesis in thraustochytrids are discussed. Exploration of biosynthesis mechanisms in other model organisms facilitated identification of potential molecular targets for engineering terpenoids biosynthetic pathway in thraustochytrids. In addition, the preliminary genetic manipulation and in silico analysis in this review provides a platform for system-level metabolic engineering towards thraustochytrid strains improvement. Overall, the review contributes comprehensive information to allow better terpenoids productivity in thraustochytrids.

The cultivation of mushrooms generates large amounts of waste polypropylene bags stuffed with wood flour and bacterial nutrients that makes the mushroom waste (MW) a potential feedstock for anaerobic bioH2 fermentation. MW indigenous bacteria were enriched using thermophilic temperature (55°C) for use as the seed inoculum without any external seeding. The peak hydrogen production rate (6.84 mmol H2/L-d) was obtained with cultivation pH 8 and substrate concentration of 60 g MW/L in batch fermentation. Hydrogen production yield (HY) is pH and substrate concentration dependent with an HY decline occurring at pH and substrate concentration increasing from pH 8 to 10 and 60 to 80 g MW/L, respectively. The fermentation bioH2 production from MW is in an acetate-type metabolic path.

Hydrogen production from lignocellulosic biomass (LCB) using dark fermentation is an interesting research niche being developed over the last decade. This review analyses the relevant studies which focused on biohydrogen production from LCB using dark fermentation techniques in terms of substrate characterization, bottlenecks associated with the pretreatment and its subsequent utilization, possible remedies for the scale-up of the most adapted processes and finally the prospects and suggestions which may be envisaged. Studies dealing primarily with the utilization of raw and pretreated LCB have been assessed in terms of biohydrogen production performance for production rate and yield. Energy production analysis and prospecting of suitable cellulosic biomass and efficient cellulolytic microbes have been elucidated towards better cellulose hydrolysis and efficient conversion of LCB to H2 in addition to process economics.

Mycoplankton are a diverse and ubiquitous component of marine environments with a suggested role in ocean biogeochemical cycling. Thus far, the patterns of their abundance, structure, and function against spatial environmental heterogeneity remains poorly understood. Based on in silico and experimental evaluation of multiple markers, we adopted the ITS1 region to determine the composition, guilds, and metabolic potential of mycoplankton communities in contrasting marine environments. The trophic status of estuarine (SB1 and SB2) and coastal (DB1 and DB2) sites, but not oceanic (OS) site, was the major factor that determined their abundances. While ascomycetous fungi dominated the estuarine and coastal sites, basidiomycetous fungi were found to dominate the oceanic site. The zoosporic fungi were relatively more abundant in SB1 and DB2 sites compared to the other sites. The relative abundances of the core fungi, namely Cystobasidium, Phlebia, Rhodotorula, Trichoderma, Alternaria, Penicillium, Malassezia, and Aspergillus varied widely across the sites. Additionally, several fungal genera unique to each site were also identified. DB2 site exhibited the lowest fungal richness while the OS site the highest. Conversely, the diversity and evenness were the lowest for the OS site but highest for the SB1 site. Temperature, pH, and chlorophyll-a were strongly associated with spatial diversity patterns. Of the 11 assigned guilds, some guilds particularly were not detected, including plant pathogen-wood saprotroph in DB2, the endophyte-plant pathogen in OS, the animal pathogen in SB1, and fungal parasite in DB1 and SB2. Within core functions—metabolism of amino acids, carbohydrates and energy, fatty acids and lipids, nitrogen, sulfur, and other compounds—several pathways showed spatial variations. Overall, this study not just broadens the taxonomic and metabolic repertoire of marine mycoplankton but also provides the first evidence of how these are shaped by site-scale environmental heterogeneity.

Docosahexaenoic acid (DHA, C22:6) production in thraustochytrids is known to be mediated independently through polyunsaturated fatty acid (PUFA) synthase and fatty acid synthase systems. This study elucidates the unresolved effects of different carbon and nitrogen sources on the functionality of PUFA synthase subunit B (pfaB) and corresponding DHA production in Thraustochytriidae sp. PKU#SW8. Carbon and nitrogen sources showed significant effect on the pfaB gene expression and DHA production patterns, but these patterns did not correspond with each other, suggesting the strong role of substrates in differential induction of the two synthase systems. Nitrogen starvation increased DHA yield in parallel with upregulated gene expression, showing strong indication of PUFA synthase activity in N-deficient culture. The fully functional catalytic activity of PfaB subunit from strain PKU#SW8 in a heterologous host was also demonstrated. This study provides the direct evidence of pfaB gene actively for DHA biosynthesis in Thraustochytriidae sp. PKU#SW8.

This study reports high rate hydrogen production from cello-lignin fraction of de-oiled jatropha waste (DJW) using hybrid immobilized cells in continuous operation. A continuous stirred tank reactor (1 L) was operated at the hydraulic retention time (HRT) range of 48–8 h to study the hydrogen production rate (HPR) and yield (HY). The cello-lignin fraction used as the substrate was the non-hydrolyzed residue of acid pretreated DJW. Experimental results showed a peak HPR of 3.65 L H2/L d and HY of 150 mL H2/g reducing sugars at the optimum HRT of 12 h and 37 °C. A significant drop in the hydrogen productivity was seen at 8 h HRT. Acetate and butyrate were the major soluble metabolic products at all HRTs, with predominance of butyrate at the optimum HRT. Major hydrogen producers belonged to Eubacterial group as evident from the molecular microbial community analysis. The energy production rate and CO2 emission reduction analyses suggested cello-lignin fraction of DJW as a high energy yielding residue which can produce 2.2 kW electricity/y and an annual CO2 emission reduction of 4.48 ton/y in a coal based power plant.

The water hyacinth, Eichhornia crassipes, impacts the environment in a number of ways. This study develops a continuous cultivation strategy and investigates the effect of these strategies for hydrogen production in anaerobic sequencing batch reactor (ASBR) and intermittent-continuous stirred tank reactor (I-CSTR) systems using the water hyacinth as feedstock. Glucose (10 g/L) was used as the feedstock to start-up the fermentor using pig slurry seed in a batch model. ASBR with increasing water hyacinth concentration was used as the start-up strategy for hydrogen production. However, the hydrogen performance decreased with increasing water hyacinth concentration. Finally, the metabolic pathway shifted to methane production with no hydrogen. A strategy for controlling the substrate and reaction pH and shortening the hydraulic retention time (HRT) in I-CSTR was used to enhance the hydrogen production. Low hydrogen production performance was achieved with a hydrogen production rate of 1.1 with 82.4mL/L-d methane production rate resulting from the I-CSTR operated using pH 4.0 feedstock and HRT 2days.

The major hurdle to produce bioenergy from rice straw is the low yield of fermentable sugars. This study was carried out to evaluate the effect of pretreatment conditions (rice straw concentration, particle size, hydrolysis time, acid concentration, FeCl 3 and enzyme additions) that can yield the maximum sugar monomers for simultaneous production of hydrogen and ethanol by mixed culture fermentation. The results of the evaluation showed that 0.8–1.0 M hydrochloric acid could give the maximum total sugar yield of 52.9%, 2.8 g/L glucose, 14.5 g/L xylose, and 38.6 g/L total reducing sugar from 100 g/L rice straw with particle size 0.15 mm, hydrolysis time 20 min. FeCl 3 addition did not enhance the sugar yield but enzymatic hydrolysis increased the reducing sugar yield to 49.8 g/L. High volumetric hydrogen production of 771 mL/L and ethanol production of 1776 mg COD/L was obtained from the pretreated rice straw hydrolyzate. And the total energy from simultaneous hydrogen and ethanol production was highest at 355 J/g polysaccharides.

The relationship between the online and offline self is one of the most interesting questions faced by new media researchers. This article argues that James Carey’s ritual view of communication can be of immense value in analyzing this complex phenomenon. The article revisits Carey’s famous “ritual view”—that saw mass communication and mass media as the primary ground for modern society—to elucidate how the notion of ritual can function as a theoretical category that is very useful for social and cultural analysis in the contemporary epoch. By discussing the nature of contemporary information processing, the article demonstrates how digital protocols and practices function in a highly ritualistic manner, thereby functioning as tools for the construction of individual and social reality. By applying Carey’s seminal insights to the “world” constructed by computer-mediated communication and social media, the article demonstrates how everyday digital rituals enable the modern subject to emerge in a paradoxical form—extensively networked and connected, yet deeply self-directed and solitary.

Food waste (FW) has been a major concern worldwide due to its large amount of production and improper disposal methods. Nevertheless, FW has been considered as a promising feedstock for the production of bioenergy employing the dark fermentation and anaerobic digestion technologies. The production of bioenergy from FW would not only solve the disposal problems of FW but will also help in the reduction of greenhouse gases while replacing the usage of coal, fuel and natural gas. This paper reviews the biotechnological aspects of the FW to bioenergy conversion processes. The first section covers the present available technologies and various process parameters involved in FW to bioenergy production. Next section describes various works reported on combined handling of FW co-digested along with various other substrates for bioenergy generation. Third section reviews the available microbiomes in FW that can be harnessed for bioenergy production. Subsequent section proposes a framework for FW biorefinery to broaden the scope of FW use in bioenergy sector and presents the case studies of pilot-scale operations of FW to bioenergy.

Mushroom cultivation waste (MCW) is a polypropylene bag stuffed with wood flour and nutrients for growing mushroom, which is a feasible feedstock for anaerobic biohydrogen production owing to its abundant availability, high organic and nutrient content. This study optimized the seed inoculum from various waste sludges (sewage sludge, cow dung and pig slurry), nutrient addition and operation conditions (moisture content and MCW powder particle size) for maximal biohydrogen production by solid-state fermentation (SSF). SSF batch test was operated at a MCW 3 g total volatile solid (TVS)/L, temperature 55 °C and rotation speed of 15 rpm with a vertical rotative shaker. The peak hydrogen production performance of hydrogen production rate (HPR) 9.50 mol H2/kg-d and hydrogen yield (HY) 0.29 mmol H2/g TVS) are obtained using sewage sludge 2 seed inoculum, nutrients addition, moisture content 70 % and particle size of 1.190∼0.590 mm. The results show that the MCW has the potential for hydrogen production by anaerobic mixed microflora using solid-state fermentation. The bioenergy of 1842 kWh while using SSF to conver MCW to produce biohydrogen and it could reduce CO2 emission of 114–178 kg per year comparing using fossil fuel such as coal, fuel oil and natural gas.

Oleaginous microorganisms are among the most promising alternative sources of lipids for oleochemicals and biofuels. However, in the course of lipid production, reactive oxygen species (ROS) are generated inevitably as byproducts of aerobic metabolisms. Although excessive accumulation of ROS leads to lipid peroxidation, DNA damage, and protein denaturation, ROS accumulation has been suggested to enhance lipid synthesis in these microorganisms. There are many unresolved questions concerning this dichotomous view of ROS influence on lipid accumulation. These include what level of ROS triggers lipid overproduction, what mechanisms and targets are vital and whether ROS act as toxic byproducts or cellular messengers in these microorganisms? Here we review the current state of knowledge on ROS generation, antioxidative defense system, the dual effects of ROS on microbial lipid production, and ROS-induced lipid peroxidation and accumulation mechanisms. Toward the end, the review summarizes strategies that enhance lipid production based on ROS manipulation.

This study reports comparative evaluation of the growth and DHA productivity of the thraustochytrid strain Thraustochytriidae PKU#Mn16 fermented with seven different substrate feeding strategies. Of these strategies, fed-batch fermentation of the mixed substrate (glucose & glycerol) yielded the maximum growth (52.2 ± 1.5 g/L), DHA yield (Yp/s: 8.65) and productivity (100.7 ± 2.9 mg/L-h), comparable with those of previously reported Aurantiochytrium strains. Transcriptomics analyses revealed that glucose upregulated some genes of the fatty acid synthase pathway whereas glycerol upregulated a few genes of the polyketide synthase pathway. Co-fermentation of the mixed substrate differentially regulated genes of these two pathways and significantly enhanced the DHA productivity. Furthermore, some genes involved in DNA replication, phagosome, carbon metabolism, and β-oxidation were also found to alter significantly during the mixed-substrate fermentation. Overall, this study provides a unique strategy for enhancing growth and DHA productivity of the strain PKU#Mn16 and the first insight into the mechanisms underlying mixed-substrate fermentation.

Marine plastic waste has become an ever-increasing environmental threat in the world's ocean largely due to their unique properties and ubiquitous occurrence. They include diverse forms of land- and ocean-based sources of plastics and are estimated to account for up to 85% of marine debris worldwide. As secondary pollutants, marine microplastic particles (5 mm) are derived from pellet loss and degradation of macroplastics. Up to now, several reports have proposed negative impacts of both macro-sized and micro-sized plastics on marine biota. As one of the rapidly growing economies, China is the topmost contributor of plastic waste in the world. China's massive impact on the plastic levels of the ocean are a definite cause of concern and is developing multiple economic, environmental and biological complications. The research of plastics impact on coastal environments in China is only incipient. Here we review the available information on plastic waste, their impacts on marine biota and human health, and Chinese government policies and management initiatives. Although Chinese coastal environments (surface water, coastal sediments, water column) are affected by microplastics pollution, both from land-based and sea-based activities, their impacts on marine biota remain to be elucidated. Though national-level policies are modern and well suited for minimizing the impacts of plastic pollution, there is hardly any legislation for containment of microplastic pollution. Our objective is to review and summarize the information about the occurrence, impacts, and management of plastic pollution in the Chinese coastal environments in order to comprehend their widespread repercussions. MAIN FINDING: Microplastics are increasingly being detected and quantified in Chinese coastal environments and legislation for containment of such pollution is highly recommended.

Heterotrophic fungus-like marine protists are recognized to contribute significantly to the coastal carbon cycling largely due to their high biomass and ability to decompose recalcitrant organic matter. Yet, little is known about their dynamics at polluted coastal environments in the context of heterotrophic microbial communities. Here, we present the dynamics of these protists relative to their heterotrophic counterparts in three different environments, namely Pearl River Estuary (ZJK), Shenzhen Bay (SZW) and Daya Bay (DYW) along the coastline of South China Sea. ZJK and SZW were characterized by low salinity and high N levels with large variations, unlike DYW. However, the average abundance of fungus-like protists did not differ significantly (P > 0.05) among these environments, except that it increased in August (422 ± 264 cells/mL, P 0.05) of fungus-like protists relative to heterotrophic bacteria, suggest their invariable contribution to carbon cycling. Thus, dynamics of fungus-like protists in relation to their heterotrophic counterparts is largely regulated by the trophic conditions of coastal environments.

The unicellular heterotrophic thraustochytrids are attractive candidates for commercial polyunsaturated fatty acids (PUFA) production. However, the reactive oxygen species (ROS) generated in their aerobic fermentation process often limits their PUFA titer. Yet, the specific mechanisms of ROS involvement in the crosstalk between oxidative stress and intracellular lipid synthesis remain poorly described. Metabolic engineering to improve the PUFA yield in thraustochytrids without compromising growth is an important aspect of economic feasibility. To fill this gap, we overexpressed the antioxidative gene superoxide dismutase (SOD1) by integrating it into the genome of thraustochytrid Schizochytrium sp. PKU#Mn4 using a novel genetic transformation system. This study reports the ROS alleviation, enhanced PUFA production and transcriptome changes resulting from the SOD1 overexpression. SOD1 activity in the recombinant improved by 5.2–71.6% along with 7.8–38.5% decline in ROS during the fermentation process. Interestingly, the total antioxidant capacity in the recombinant remained higher than wild-type and above zero in the entire process. Although lipid profile was similar to that of wild-type, the concentrations of major fatty acids in the recombinant were significantly (p ≤ 0.05) higher. The PUFA titer increased up to 1232 ± 41 mg/L, which was 32.9% higher (p ≤ 0.001) than the wild type. Transcriptome analysis revealed strong downregulation of genes potentially involved in β-oxidation of fatty acids in peroxisome and upregulation of genes catalyzing lipid biosynthesis. Our results enrich the knowledge on stress-induced PUFA biosynthesis and the putative role of ROS in the regulation of lipid metabolism in oleaginous thraustochytrids. This study provides a new and alternate strategy for cost-effective industrial fermentation of PUFA., Highlights • SOD1 gene overexpressed in Schizochytrium sp. PKU#Mn4 for enhanced PUFA production. • Recombinant strain yielded 1.37-fold higher PUFA production than wild-type strain. • ROS alleviation and increased T-AOC in recombinant strain without affecting growth. • Probing transcriptome revealed strong downregulation of fatty acids β-oxidation. • Most downregulated genes were peroxisomal suggesting reduced β-oxidation of C22:6.

Thraustochytrids, rich in docosahexaenoic acid (DHA, C22:6ω3), represent a potential source of dietary fatty acids. Yet, the effect of culture conditions on growth and fatty acid composition vary widely among different thraustochytrid strains. Two different thraustochytrid strains, Schizochytrium sp. PKU#Mn4 and Thraustochytriidae sp. PKU#Mn16 were studied for their growth and DHA production characteristics under various culture conditions. Although they exhibited similar fatty acid profiles, PKU#Mn4 seemed a good candidate for industrial DHA fermentation while PKU#Mn16 displayed growth tolerance to a wide range of process conditions. Relative DHA content of 48.5% and 49.2% (relative to total fatty acids), respectively, were achieved on glycerol under their optimal flask culture conditions. Maximum DHA yield (Yp/x) of 21.0% and 18.9% and productivity of 27.6 mg/L-h and 31.9 mg/L-h were obtained, respectively, in 5-L bioreactor fermentation operated with optimal conditions and dual oxygen control strategy. A 3.4- and 2.8-fold improvement of DHA production (g/L), respectively, was achieved in this study. Overall, our study provides the potential of two thraustochytrid strains and their culture conditions for efficient production of DHA-rich oil.