1. Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain V H H antibodies.
- Author
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Ikeuchi E, Kuroda D, Nakakido M, Murakami A, and Tsumoto K
- Subjects
- Amino Acid Sequence, Animals, Biophysical Phenomena immunology, Humans, Molecular Conformation, Molecular Dynamics Simulation, Protein Binding physiology, Single-Domain Antibodies chemistry, Single-Domain Antibodies immunology, Antibodies immunology, Single-Chain Antibodies chemistry, Single-Chain Antibodies immunology
- Abstract
The high binding affinities and specificities of antibodies have led to their use as drugs and biosensors. Single-domain V
H H antibodies exhibit high specificity and affinity but have higher stability and solubility than conventional antibodies as they are single-domain proteins. In this work, based on physicochemical measurements and molecular dynamics (MD) simulations, we have gained insight that will facilitate rational design of single-chain VH H antibodies. We first assessed two homologous VH H antibodies by differential scanning calorimetry (DSC); one had a high (64.8 °C) and the other a low (58.6 °C) melting temperature. We then generated a series of the variants of the low stability antibody and analyzed their thermal stabilities by DSC and characterized their structures through MD simulations. We found that a single mutation that resulted in 8.2 °C improvement in melting temperature resulted in binding affinity an order of magnitude lower than the parent antibody, likely due to a shift of conformational space explored by the single-chain VH H antibody. These results suggest that the delicate balance among conformational stability, binding capability, and conformational space explored by antibodies must be considered in design of fully functional single-chain VH H antibodies., (© 2021. The Author(s).)- Published
- 2021
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