46 results on '"Binti S"'
Search Results
2. Development of Water Quality System to Monitor Turbidity and Temperature of Water Using GSM Module.
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Suzi Seroja Sarnin, Athirah Bt. Hussein, Danial B. Zahidi, Nani Fadzlina Naim, Ros Shilawani Binti S. Abdul Kadir, and Mohd Nor Md Tan
- Published
- 2020
- Full Text
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3. Kisah hati di ujung jari [sumber elektronis] : kumpulan cerita pendek
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Latif, Nashrudin, primary, Mughis, M. Samsul, additional, Pangestuti, Dwi M., additional, Anadiroh, Manapiah, additional, Jannah, Binti S., additional, Thahirah, Khadijah A., additional, Rukmini, Meme, additional, Hakimah, Ema N., additional, Yuliana, Rita, additional, Arintowati, Dyan, additional, and Elifi, Fitri R., additional
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- 2020
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4. The preliminary investigation of electromagnetics radiation for the left hemisphere stroke.
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Ros Shilawani Binti S. Abdul Kadir, Zunairah binti Hj. Murat, M. Z. Sulaiman, Mohd Nasir Taib, Fazah Akhtar Hanapiah, and W. R. W. Omar
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- 2014
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5. Summative EEG alpha classification relates learning style and openness.
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Nazre bin Abdul Rashid, Mohd Nasir Taib, Zunairah binti Hj. Murat, Ros Shilawani Binti S. Abdul Kadir, Sahrim bin Lias, and Norizam bin Sulaiman
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- 2014
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6. Improve Coal Blending Optimization in CFPP by Cromosom and Fitness Function Redefinition of the Genetic Algorithm
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Binti Solihah, Ahmad Zuhdi, Abdul Rochman, Edo Yulistama, and Hilda Dwi Utari
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coal blending, cofiring, genetic algorithm ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Blending coal before it enters the power plant boiler unit is necessary to adjust the coal categories according to the boiler unit specifications. The power plant must also comply with the regulations regarding coal-biomass co-firing through blending. Applying a Genetic Algorithm that only considers the composition and fitness based on the blend's quality leads to accumulation issues, decreasing coal quality. This research proposes redefining chromosomes, fitness functions, mutation rules, population determination, and output as the best chromosome used in the Genetic Algorithm. Testing uses various compositions of coal inputs from the barge, coal yard, and biomass to simulate different conditions. The test results demonstrate that the developed algorithm can provide all possible alternative blends between the coal in the barge and at the coal yard. Under specific conditions, operators can choose a blend composition that involves coal stored in the coal yard for an extended period.
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- 2024
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7. THE SWEET POTATO YIELD EFFECT OF CULTIVATION IN MONOCULTURE IN 2016-2022.
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SZARVAS, A., BINTI, S. AFIQAH IZZATI, DAI, Z., and BORDÉ, Á.
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SWEET potatoes , *CLAY loam soils , *CROP rotation , *FARMERS , *CROP quality , *POTATO growing - Abstract
More and more people are growing sweet potatoes in Hungary, but no one has yet tested how long they can be grown successfully on the same soil type. This means the quantitative and qualitative variables of the yield. From 2016 to 2022, I planted sweet potato slips in the same area and after four years, the yields decrease significantly. To reduce problems caused by soilborne pathogens, a three to five year rotation of crops is recommended. In Deszk, we set up the experiment on a 300 m2 area for all seven years. Based on clay loam soil. The area was fallowed for 5 years before 2016 and then planted with sweet potatoes for seven years. We always used the same field, so sweet potatoes were grown in monoculture. We also used the practices of growers in the area for soil preparation and the application of soil disinfectant. There was a significant difference in yields between seven years (p<0.05), with the highest yield (41.01 t/ha) in 2018, followed by 2016 (37.19 t/ha) and the lowest yield in 2022 (10.01 t/ha) (p<0.05). The total rainfall and average temperature of the 2017 growing season were not favourable, which was also reflected in the yield to a significant extent. The year 2019 was 30 t/ha, which can be considered as good results. From 2020 onwards, we have seen a continuous decrease in yields, which can be attributed to the effect of monoculture. The studies show that sweet potatoes can be grown successfully on clay loam soil for four years. In the following years the yield significantly decreased. Thus, it is advisable to set the field aside after four years. I recommend the use of ridges techology because using rides technology the harvesting is much easier, there will be fewer damaged tubers and the tubers have more room to grow in the ridges. Soil-dwelling pests need to be controlled, as soil-dwelling pests can cause serious problems in crop quality. It is advisable to change soil disinfectants every two years so that soil-dwelling pests do not become resistant to the active ingredient. [ABSTRACT FROM AUTHOR]
- Published
- 2023
8. Green procurement in the construction industry: unfolding new underlying barriers for a developing country context
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Jeffrey Boon Hui Yap, Yu Han Teh, Siaw Chuing Loo, Kamran Shavarebi, and Binti Sulaiman Zamharira
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green procurement ,barriers ,construction industry ,developing country ,underlying dimensions ,Building construction ,TH1-9745 - Abstract
Despite the construction industry’s detrimental effects on environmental sustainability, the concept of green procurement (GP) is still relatively new in the developing world. The barriers hindering GP adoption need detailed investigation as studies in the context of developing countries are still limited and the underlying dimensions remain a known-unknown. This study appraised the critical barriers to GP adoption in the Malaysian construction industry. Twenty (20) barriers were identified from the detailed literature review and a field survey was conducted with 150 professionals. The ranking analysis results indicated the top five barriers are: high initial cost; lack of expertise and regulations; lack of government regulations; lack of top management commitment and lack of awareness among construction stakeholders. A factor analysis further identified five major underlying dimensions. The study showed that both government and organisational commitments are crucial in promoting GP adoption. This study adds to incremental knowledge in GP literature by analysing the critical barriers and the associated underlying dimensions to GP adoption in a developing country, which could help practitioners and policymakers in evaluating the organisation’s or industry’s readiness to adopt GP practices along with devising apt measures to mitigate the barriers to shift to sustainable and environmentally friendly construction.
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- 2024
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9. Netnografi in action
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Harkaneri, Firman Sujatmiko, Rahmawati Ramli, Maria Assumpta, Dika F. Anjarwati, Muhammad Yusran, Lusiana Kanji, Mustakim Muchlis, Binti S. Jannah, Wa O. Rayyani, Ahmad Kudhori, Ratna A. Aripratiwi, Syahrul Djafar, Ria A. Sholihah, Luky Patricia, Eka Siskawati, Abdul Mun'im, Adib A. Nizar, Ahmad F. Fathoni, A'isyah M. Sholihah, Wijaya, Dita M. Agustina, Virginia N. Rahmanti, Dani Sugiri, Rian Vebrianto, Ayudia Sokarina, A A Gde Satia Utama, Erika Takidah, Selvia E. Aristantia, and Dwi I.F. Wijaya
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Action (philosophy) ,Psychology ,Neuroscience - Published
- 2021
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10. Kisah hati di ujung jari [sumber elektronis] : kumpulan cerita pendek
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Khadijah A. Thahirah, Fitri R. Elifi, Binti S. Jannah, Nashrudin Latif, Meme Rukmini, Dwi M. Pangestuti, Ema N. Hakimah, Dyan Arintowati, Rita Yuliana, M. Samsul Mughis, and Manapiah Anadiroh
- Published
- 2020
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11. Efficacy and Safety of Autologous Cell-based Therapy in Patients with No-option Critical Limb Ischaemia: A Meta-Analysis
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Mohamad Azim Mohamad Idris, Nor Asiah Muhamad, Fadilah binti S Abdul Wahid, Nor Azimah Ismail, Nai Ming Lai, and Wan Fariza Wan Jamaludin
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0301 basic medicine ,medicine.medical_specialty ,medicine.medical_treatment ,Population ,Cell- and Tissue-Based Therapy ,Medicine (miscellaneous) ,Bone Marrow Cells ,Cochrane Library ,Transplantation, Autologous ,03 medical and health sciences ,Ischemia ,Internal medicine ,medicine ,Limb perfusion ,Humans ,education ,Bone Marrow Transplantation ,Peripheral Vascular Diseases ,education.field_of_study ,business.industry ,General Medicine ,Critical limb ischemia ,Clinical trial ,Regimen ,030104 developmental biology ,medicine.anatomical_structure ,Amputation ,Bone marrow ,medicine.symptom ,business - Abstract
Background Revascularisation therapy is the current gold standard of care for critical limb ischemia (CLI), although a significant proportion of patients with CLI either are not fit for or do not respond well to this procedure. Recently, novel angiogenic therapies such as the use of autologous cellbased therapy (CBT) have been examined, but the results of individual trials were inconsistent. Objective To pool all published studies that compared the safety and efficacy of autologous CBT derived from different sources and phenotypes with non cell-based therapy (NCT) in CLI patients. Methods We searched Medline, Embase, Cochrane Library and ClinicalTrials.gov from 1974-2017. Sixteen randomised clinical trials (RCTs) involving 775 patients receiving the following interventions: mobilised peripheral blood stem cells(m-PBSC), bone marrow mononuclear cells(BM-MNC), bone marrow mesenchymal stem cells(BM-MSC), cultured BM-MNC(Ixmyelocel-T), cultured PB cells(VesCell) and CD34+ cells were included in the meta-analysis. Results High-quality evidence (QoE) showed similar all-cause mortality rates between CBT and NCT. AR reduction by approximately 60% were observed in patients receiving CBT compared to NCT (moderate QoE). CBT patients experienced improvement in ulcer healing, ABI, TcO2, pain free walking capacity and collateral vessel formation (moderate QoE). Low-to-moderate QoE showed that compared to NCT, intramuscular BM-MNC and m-PBSC may reduce amputation rate, rest pain, and improve ulcer healing and ankle-brachial pressure index, while intramuscular BM-MSC appeared to improve rest pain, ulcer healing and pain-free walking distance but not AR. Efficacy of other types of CBT could not be confirmed due to limited data. Cell harvesting and implantation appeared safe and well-tolerated with similar rates of adverse-events between groups. Conclusion Implantation of autologous CBT may be an effective therapeutic strategy for no-option CLI patients. BM-MNC and m-PSBC appear more effective than NCT in improving AR and other limb perfusion parameters. BM-MSC may be beneficial in improving perfusion parameters but not AR, however, this observation needs to be confirmed in a larger population of patients. Generally, treatment using various sources and phenotypes of cell products appeared safe and well tolerated. Large-size RCTs with long follow-up are warranted to determine the superiority and durability of angiogenic potential of a particular CBT and the optimal treatment regimen for CLI.
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- 2018
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12. Is It Important To Integrate Islamic Values In Accounting Education?
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Binti Shofiatul Jannah
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accounting education ,accounting scandal ,islamic values ,olah rasa ,Accounting. Bookkeeping ,HF5601-5689 - Abstract
Various accounting scandals involving the accounting profession are indicated because of the dominance of reason in accounting education. So, this research aims to understand and examine the perceptions of accounting educators about integrating Islamic values into accounting education. An interpretive perspective is used in this qualitative research. Data collection techniques through interviews. In-depth interviews were conducted with three accounting lecturers with open questions. Furthermore, the results of the interviews were transcribed and analyzed using the Miles and Huberman model, namely data reduction, data presentation, and conclusion. Islamic values are essential to be integrated into accounting education. Integrating Islamic values in accounting education includes praying together before learning, reading Quran verses, and practising "olah rasa" in class. The research results prove that Islamic values must be integrated into accounting education.
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- 2023
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13. Comparison of in vitro Susceptibilities of Talaromyces marneffei in Mold and Yeast Forms in Malaysia
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Tan XT, binti Mohd Shuhairi N, Jane Ginsapu S, Binti Shukor S, and Amran F
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talaromyces marneffei ,susceptibility ,yeast ,mold ,Infectious and parasitic diseases ,RC109-216 - Abstract
Xue Ting Tan, Nurliyana binti Mohd Shuhairi, Stephanie Jane Ginsapu, Surianti Binti Shukor, Fairuz Amran Bacteriology Unit, Infectious Diseases Research Centre, Institute for Medical Research, National Institutes of Health, Ministry of Health Malaysia, Setia Alam, Selangor, MalaysiaCorrespondence: Xue Ting Tan, Bacteriology unit, Infectious Diseases Research Centre, Institute for Medical Research, National Institutes of Health, Ministry of Health Malaysia, Setia Alam, Selangor, Malaysia, Tel +60 333628968, Email tanxt@moh.gov.myPurpose: This study was aimed to determine minimum inhibitory concentration (MIC) differences between yeast and mold forms of T. marneffei in Malaysia.Patients and Methods: Ninety-seven clinical strains of T. marneffei were received from various Malaysian hospitals from the year 2020 until 2022. Their identities were determined using microscopic, macroscopic and molecular methods. Next, the susceptibility of yeast and mold forms of each isolate against amphotericin B, itraconazole, voriconazole, posaconazole, ketoconazole, isavuconazole, terbinafine, caspofungin and micafungin were tested according to the broth microdilution according to the Clinical and Laboratory Standards Institute (CLSI) M38 and M27 guidelines. The geometric means of minimal inhibitory concentration (GM MIC), MIC50, and MIC90 were determined for each antifungal. Additionally, Wilcoxon signed-rank test was used to compare the significant difference of GM MICs for each antifungal, GM MIC, MIC50 and MIC90 for the combined nine antifungals against different growth forms of T. marneffei. The significance was set at p< 0.05.Results: Micafungin had the highest GM MIC, MIC50 and MIC90 for mold form of T. marneffei. For yeast form, amphotericin B achieved the highest GM MIC and MIC50 while micafungin achieved the highest MIC90. However, the GM MIC, MIC50 and MIC90 of terbinafine and azole antifungals on T. marneffei were similar to each other, namely between 0.03 and 0.60μg/mL. The difference of GM MIC of all tested antifungals except caspofungin and micafungin was insignificant. Overall, GM MIC, MIC50 and MIC90 of the combined nine antifungals against two growth forms were insignificant.Conclusion: The findings suggested either yeast or mold form can be used in the susceptibility testing of T. marneffei against amphotericin B, itraconazole, voriconazole, posaconazole, ketoconazole, isavuconazole and terbinafine.Keywords: Talaromyces marneffei, susceptibility, yeast, mold
- Published
- 2023
14. Summative EEG-based Assessment of the Relations between Learning Styles and Personality Traits of Openness
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Zunairah binti Murat, Ros Shilawani binti S. Abd. Kadir, Mohd Nasir Taib, Khairulanuar Samsudin, Norizam Sulaiman, Sahrim Lias, and Nazre Abdul Rashid
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medicine.diagnostic_test ,Learning Styles ,Openness ,Electroencephalography ,Summative EEG ,Dreyfus model of skill acquisition ,Learning styles ,Learning Style ,Beta band ,Summative assessment ,medicine ,Openness to experience ,Cluster Analysis ,Profiling (information science) ,General Materials Science ,Big Five personality traits ,Psychology ,Social psychology ,Cognitive psychology - Abstract
Learning styles (LS), being one of the important attributes of a learner's profile, are relevant to different aspects of teaching and learning such as the learner's achievement and motivation. Equally important is the personality traits of ‘Openness’, which relate positively to knowledge and skill acquisition, thus making them relevant to learning and learners differences. Recognizing the importance of LS and Openness in profiling learners, the researchers carried out this study to examine the relationship between these two factors using a novel method based on Electroencephalogram (EEG) technology. In this research, Kolb's Learning Style Inventory (KLSI) was used to determine 131 participants’ LS: Diverger, Assimilator, Converger or Accommodator . The EEG technology was used to record the participants’ brain signals (with their eyes closed) to generate the dataset of EEG Beta band of baseline condition. Later, the dataset was processed and classified based on the LS using the 2-Step Cluster Analysis . The result showed that the brain signals could be processed effectively to classify the participants’ LS. More importantly, among the LS studied, convergers and assimilators were observed to have positive and strong relation with Openness. Between the two learning styles, assimilators were found to have stronger relation with Openness than convergers.
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- 2013
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15. Cytotoxicity of synthesized silver nanoparticles on breast cancer cells
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Darmadi Jason, Anwar Ayaz, and binti Shamsul Anuar Nurshafida Adzlin
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Environmental sciences ,GE1-350 - Abstract
Breast cancers are becoming harder to treat due to the acquisition of chemo-drug resistance. In this study, silver nanoparticles (AgNPs) were synthesized using reducing agent NaBH4, where resulting nanoparticles were characterized using UV-vis spectroscopy, FTIR spectroscopy, SEM, and DLS. Cytotoxicity of synthesized AgNPs was evaluated against MCF-7, MCF-7-CR, and MDA-MB-231 using MTT assays. NaBH4-reduced AgNPs were unstable as a colloidal system, with zeta potential noted to be around -21 mV and a polydispersity index of around 15%, making them highly prone to aggregation. However, AgNPs significantly reduced the cell viability of MCF-7 breast cancer cell lines, while slight toxicity was seen in multi-drug resistant breast cancer cells MCF-7-CR and MDA-MB-231 at 10 µM.
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- 2024
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16. Current Progress on Gold Nanoparticle-Mediated Gene Delivery for Human Cancer Treatment
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Darmadi Jason, Anwar Ayaz, and binti Shamsul Anuar Nurshafida Adzlin
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Environmental sciences ,GE1-350 - Abstract
Cancer treatments have become less effective in recent years, with cancer cells mutating into more non-sensitive against a plethora of chemotherapeutics. While gene therapy can lead to cancer cell sensitization and effective treatment, gene-related drugs are prone to degradation and highly unstable. Nanoparticles can thus be used for the delivery of genes as well as other therapeutic compounds into cancer cells. Gold nanoparticles (AuNPs) have been used in cancer therapy especially for drug delivery due to their ease of synthesis and modification. AuNPs were also considered versatile nanoparticles as their characteristics could be easily customized and modulated for therapy, monitoring, or delivery. Another important characteristic that made AuNPs viable for cancer therapy is surface plasmonic resonance (SPR) which enables hyperthermia-based therapy and imaging. Therefore, utilizing AuNPs novel approaches in multi-modal therapies is achievable, where targeted gene and chemotherapy coupled with other modalities such as hyperthermia-based therapy could be performed. This article reviews several reported cases of AuNPs-based gene therapy as well as notable theranostic therapy that includes SPR characteristic utilization for therapy as well as cancer imaging.
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- 2024
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17. Appraisal of EEG Beta summative power towards Learning Style classification
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Zunairah Hj Murat, Sahrim Lias, Norizam Sulaiman, Nazre Abdul Rashid, Mohd Nasir Taib, and Ros Shilawani binti S. Abd. Kadir
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medicine.diagnostic_test ,business.industry ,Computer science ,BETA (programming language) ,Electroencephalography ,Machine learning ,computer.software_genre ,Summative assessment ,medicine ,Artificial intelligence ,Cluster analysis ,business ,computer ,computer.programming_language - Abstract
Advancement in Neuroscience namely EEG technology had been serving in education-related research with immense contributions. On the other hand, Learning Style (LS) had emerged as an important study in education frontier. In this research, the classification of participants (N=131) LS is implemented using EEG Beta Summative Power Spectrum Density (PSD) and Kolb's Learning Style Inventory questionnaire. The LS clustering process with EEG Beta Summative PSD dataset is fulfilled using SPSS Two-steps Cluster Analysis tool. The findings established that EEG Beta Summative power had been successful in classifying the LS with high percentage obtained. Meanwhile, the classification dissimilarity caused by EEG Beta Summative PSD in different construct was considered as minimal and Accommodators had been discovered as the best LS classified using EEG Beta Summative PSD.
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- 2015
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18. Breaking the [Sacredness] Costs in Management Accounting: Periphery Case Analysis
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Binti Shofiatul Jannah and Husnul Hatimah
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mainstream accounting ,cost concept ,construction ,Accounting. Bookkeeping ,HF5601-5689 - Abstract
This study aims to explain and construct the concept of cost beyond the reasoning in mainstream accounting. This construction is carried out by redefning the cost based on the “periphery” case. I reference to the Nusantara paradigm, the four principles (kaidah) in building Siraman Gong Kiai Pradah methodology have been fulflled. Therefore, the method used has been out of the ordinary research methods. First, it prepares a “periphery” case to be investigated for the costs. Second, it draws the position closer to God by doing penances so that they are given instructions in reducing and classifying the data. Third, doing the charity. Fourth, it includes the “value” of the “periphery” case in the new cost concept. Finally, this article proposes a change to the defnition of cost. Through the “periphery” case, the concept of cost transcends materialism. Cost is a number of expenses incurred, based on sincerity aimed at helping others in order to obtain the benefts both for the world and the hereafter by prioritizing the principle of mutual help.
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- 2022
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19. Sustainability reports disclosures: Siapakah stakeholder yang paling penting?
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Binti Shofiatul Jannah, Hans Wakhida Rakhmatullah, and Yohan Bakhtiar
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analisis konten ,sustainability reports ,tipologi stakeholder ,Accounting. Bookkeeping ,HF5601-5689 - Abstract
This study aims to analyze the most important stakeholders in Indonesian companies. One of the main reporting principles in GRI 101 is stakeholder inclusiveness. Content analysis was used to identify stakeholders in 38 companies that participated in the 2017 Sustainability Reporting Awards. The first step taken is coding the stakeholders. The next step is to record the symbols and interpret the results according to the typology of stakeholder Mitchell et al (1997). The findings of the study show that shareholders and government are the most important stakeholders, regardless of industry differences in the sample. Abstrak Penelitian ini bertujuan untuk menganalisis stakeholder yang paling penting di perusahaan Indonesia. Salah satu prinsip pelaporan utama dalam GRI 101 adalah inklusivitas stakeholder. Analisis konten digunakan untuk mengidentifikasi stakeholder di 38 perusahaan yang mengikuti Sustainability Reporting Awards 2017. Langkah pertama yang dilakukan adalah melakukan coding terhadap stakeholder. Langkah selanjutnya adalah merekam simbol dan menafsirkan hasilnya sesuai kerangka typology stakeholder Mitchell et al (1997). Temuan penelitian menunjukkan bahwa pemegang saham dan pemerintah menjadi pemangku kepentingan yang paling penting, terlepas dari perbedaan industri dalam sampel.
- Published
- 2021
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20. The comparison of human body Electromagnetic radiation between Down Syndrome and Non Down Syndrome person for brain, chakra and energy field stability score analysis
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Ros Shilawani binti S. Abd. Kadir, Zunairah Hj Murat, Mastura Rosdi, and Nadiah Kamaruzaman
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medicine.medical_specialty ,Down syndrome ,Aura ,business.industry ,media_common.quotation_subject ,Energy (esotericism) ,Frequency data ,Chakra ,Human body ,Audiology ,medicine.disease ,medicine ,Personality ,Data recording ,business ,Simulation ,media_common - Abstract
This paper present a study on the comparison of human body Electromagnetic radiation of Down Syndrome and Non Down Syndrome persons. Frequency data were recorded using human body radiation detector from 15 persons from National Association of Down Syndrome Malaysia and 15 persons from Universiti Teknologi MARA, Shah Alam with age range between 6–28 years old. The body Electromagnetic radiation was analyzed based on three analyses which are brain analysis, chakra analysis and energy field stability score analysis. The data was analyzed using software by converting the frequency into color and categorized the human aura. From these findings, Brain Analysis indicated that Non Down Syndrome persons were slightly relax and creative by 93.33% as compared to Down Syndrome persons by 80%. For Chakra Analysis, Non Down Syndrome persons are better in communication, handling stress and their mind rather than person with Down Syndrome by 80%. For the Energy Field Stability Score Analysis, results demonstrated that 26.67% of Non Down Syndrome persons having a stable personality while 20% persons for Down Syndrome persons. Additionally, 80% of Down Syndrome persons have dynamic personalities while 73.33% for Non Down Syndrome persons. By completing this research, it can be concluded that the human body radiation detector can identify the human body Electromagnetic radiation or aura between Down Syndrome and Non Down Syndrome person.
- Published
- 2012
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21. Appraisal of EEG Beta summative power towards Learning Style classification
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bin Abdul Rashid, Nazre, primary, bin Taib, Mohd. Nasir, additional, Murat, Zunairah binti Hj., additional, Kadir, Ros Shilawani binti S. Abd., additional, bin Lias, Sahrim, additional, and bin Sulaiman, Norizam, additional
- Published
- 2015
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22. The Empirical Comparison of Machine Learning Algorithm for the Class Imbalanced Problem in Conformational Epitope Prediction
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Binti Solihah, Azhari Azhari, and Aina Musdholifah
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sampling-based method, class imbalance, conformational epitope, b-cell, machine learning-based ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
A conformational epitope is a part of a protein-based vaccine. It is challenging to identify using an experiment. A computational model is developed to support identification. However, the imbalance class is one of the constraints to achieving optimal performance on the conformational epitope B cell prediction. In this paper, we compare several conformational epitope B cell prediction models from non-ensemble and ensemble approaches. A sampling method from Random undersampling, SMOTE, and cluster-based undersampling is combined with a decision tree or SVM to build a non-ensemble model. A random forest model and several variants of the bagging method is used to construct the ensemble model. A 10-fold cross-validation method is used to validate the model. The experiment results show that the combination of the cluster-based under-sampling and decision tree outperformed the other sampling method when combined with the non-ensemble and the ensemble method. This study provides a baseline to improve existing models for dealing with the class imbalance in the conformational epitope prediction.
- Published
- 2021
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23. An investigation of square split-ring resonator as antenna operating at Terahertz frequency
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Aziati Husna Awang, Mohd Asmidar bin Abdul Wahab, and Ros Shilawani binti S. Abd. Kadir
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Patch antenna ,Materials science ,Coaxial antenna ,business.industry ,Loop antenna ,Antenna aperture ,Antenna measurement ,Antenna factor ,law.invention ,Optics ,law ,Optoelectronics ,Dipole antenna ,business ,Monopole antenna - Abstract
This paper describes the investigation of antenna characteristics of split-ring resonators (SRRs). Antenna propagating at terahertz (THz) region which varies from 0.1 to 10THz is very useful mainly for medical purposes. In order to have antenna propagating at terahertz region, square SRRs which have negative permittivity and permeability are designed accordingly at terahertz region and studied whether they can act as antenna or not. From these models, the antenna characteristics which is the voltage standing wave ratio (VSWR), return loss (S 11 ) and resonant frequency (f c ) are observed and analyzed. The antenna characteristics are investigated by designing various types of SRRs which is 1-, 2-, 4-cut single-ring and double SRRs using different kinds of substrates which is Teflon, GaAs and quartz.
- Published
- 2007
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24. Summative EEG alpha classification relates learning style and openness
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Bin Abdul Rashid, Nazre, primary, Bin Taib, Mohd Nasir, additional, Binti Hj Murat, Zunairah, additional, binti S. Abd Kadir, Ros Shilawani, additional, Bin Lias, Sahrim, additional, and Bin Sulaiman, Norizam, additional
- Published
- 2014
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25. Acute leukaemia masquerading as acute abdomen
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Raymond bin Azman Ali, Cheong Soon Keng, and Fadilah binti S Abdul Wahid
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Adult ,medicine.medical_specialty ,Abdominal pain ,Adolescent ,Blood count ,Disease ,Diagnosis, Differential ,Fatal Outcome ,hemic and lymphatic diseases ,medicine ,Humans ,Abdomen, Acute ,General Veterinary ,business.industry ,Cytotoxic chemotherapy ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Appendix ,Surgery ,medicine.anatomical_structure ,Acute abdomen ,Leukemia, Myeloid ,Acute Disease ,Female ,Abdominal symptoms ,Radiology ,medicine.symptom ,Differential diagnosis ,business - Abstract
This article reports three patients with acute leukaemia who presented with acute abdomen as the first manifestation of the disease. Leukaemic infiltrates of the bowel and appendix may have caused the abdominal symptoms in these patients. Acute leukaemia should be included in the differential diagnosis of severe abdominal pain associated with an abnormal blood count. This report highlights the importance of early diagnosis of acute leukaemia as initiation of cytotoxic chemotherapy results in prompt resolution of the abdominal catastrophe and obviates the need for surgery.
- Published
- 2002
26. ANALISIS PENGENDALIAN MUTU PADA PROSES PEMBEKUAN UDANG VANAME (Litopenaeus vannamei)
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IFFAN MAFLAHAH, Binti Sri Rahayu, and Asfan Asfan
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udang beku, pengendalian mutu, six sigma ,Agricultural industries ,HD9000-9495 - Abstract
PT. XYZ is a company that processes vaname shrimp into frozen shrimp products. Frozen shrimp is a product that serves for export, so that it must meet predetermined quality standards. Quality measurement is determined to monitor a process under controlled or uncontrolled conditions. The method of measuring is the six sigma method. The purpose of this research is an alarm that is responsive, alert, and alert, attentive, alert and responds to frozen products using the six sigma method at PT. XYZ. The frozen peeled shrimp production process stages start from receiving raw materials, cutting shrimp heads, quality sorting and size separation, peeling the skin and taking the intestines, soaking, freezing shrimp, packaging, metal detection, and product packaging. The results showed that 1,904 frozen peeled shrimp with 43 defective products had a sigma level of 3,22 with possible damage of 40.363,38 for one million products (DPMO) and the proportion of wrong causes of defects, namely 44,2%. The proposed improvements to be carried out are to provide direction and advice to employees to be careful and thorough, and the company offers a unique tool for cleavage of shrimp.
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- 2020
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27. Sentiment analysis using naive bayes for reviews of visitors to Padang City beach tourism after the COVID-19 pandemic
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Astri Renita, Po Hung Lai, Binti Sura Suaini, Kamal Ahmad, and Yuliet Rina
- Subjects
Environmental sciences ,GE1-350 - Abstract
The COVID-19 pandemic has an impact on the economy of Padang City. To revive the economy, especially in the tourism sector, the government is trying to improve services to visitors so that the number of tourist visits increases again. As one of the efforts is to find out the opinion of tourists on the beach tourism area visited. This research aims to assist the Padang City government in knowing the positive or negative responses of tourists through the sentiment analysis process to the beach tourism they visit so that The Government of Padang City can determine the policies to be taken in connection with the reviews given by beach tourism visitors. By using reviews on Google Maps on the attractions of Air Manis Beach, Padang Beach, Pasir Jambak Beach, Nirwana Beach, and Pasir Putih Beach, clustering is carried out with the Naive Bayes classification algorithm. Based on the results of the analysis that has been done, 2 of the 5 beaches get negative reviews, namely Pasir Jambak Beach and Pasir Putih Beach which get negative values of 0.550 and 0.650.
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- 2023
- Full Text
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28. Feasibility Study on Plant Chili Disease Detection Using Image Processing Techniques
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Husin, Zulkifli Bin, primary, Shakaff, Ali Yeon Bin Md., additional, Aziz, Abdul Hallis Bin Abdul, additional, and Farook, Rohani Binti S. Mohamed, additional
- Published
- 2012
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29. Analogue diagnosis of CMOS floating gate defect (FGD) using Genetic Algorithms (GAs).
- Author
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Wong Yan Chiew, Binti, S., and Radzi, A.
- Published
- 2008
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30. Acute leukaemia masquerading as acute abdomen
- Author
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Wahid, Fadilah binti S Abdul, primary, Keng, Cheong Soon, additional, and Ali, Raymond bin Azman, additional
- Published
- 2002
- Full Text
- View/download PDF
31. Factors Affecting Entrepreneurial Intention Among The Malaysian University Students
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Binti Shamsudin, Siti Farhah Fazira, Mamun, Abdullah Al, Che Nawi, Noorshella Binti, Md Nasir, Noorul Azwin Binti, and Bin Zakaria, Mohd Nazri
- Published
- 2017
- Full Text
- View/download PDF
32. Enhancement of conformational B-cell epitope prediction using CluSMOTE
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Binti Solihah, Azhari Azhari, and Aina Musdholifah
- Subjects
Cluster-based undersampling ,SMOTE ,Class imbalance ,Hybrid sampling ,Hierarchical DBSCAN ,Vaccine design ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Background A conformational B-cell epitope is one of the main components of vaccine design. It contains separate segments in its sequence, which are spatially close in the antigen chain. The availability of Ag-Ab complex data on the Protein Data Bank allows for the development predictive methods. Several epitope prediction models also have been developed, including learning-based methods. However, the performance of the model is still not optimum. The main problem in learning-based prediction models is class imbalance. Methods This study proposes CluSMOTE, which is a combination of a cluster-based undersampling method and Synthetic Minority Oversampling Technique. The approach is used to generate other sample data to ensure that the dataset of the conformational epitope is balanced. The Hierarchical DBSCAN algorithm is performed to identify the cluster in the majority class. Some of the randomly selected data is taken from each cluster, considering the oversampling degree, and combined with the minority class data. The balance data is utilized as the training dataset to develop a conformational epitope prediction. Furthermore, two binary classification methods, Support Vector Machine and Decision Tree, are separately used to develop model prediction and to evaluate the performance of CluSMOTE in predicting conformational B-cell epitope. The experiment is focused on determining the best parameter for optimal CluSMOTE. Two independent datasets are used to compare the proposed prediction model with state of the art methods. The first and the second datasets represent the general protein and the glycoprotein antigens respectively. Result The experimental result shows that CluSMOTE Decision Tree outperformed the Support Vector Machine in terms of AUC and Gmean as performance measurements. The mean AUC of CluSMOTE Decision Tree in the Kringelum and the SEPPA 3 test sets are 0.83 and 0.766, respectively. This shows that CluSMOTE Decision Tree is better than other methods in the general protein antigen, though comparable with SEPPA 3 in the glycoprotein antigen.
- Published
- 2020
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33. Development and validation of a new knowledge, attitude, belief and practice questionnaire on leptospirosis in Malaysia
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Wan Mohd Zahiruddin, Wan Nor Arifin, Shafei Mohd-Nazri, Surianti Sukeri, Idris Zawaha, Rahman Abu Bakar, Rukman Awang Hamat, Osman Malina, Tengku Zetty Maztura Tengku Jamaludin, Arumugam Pathman, Ab Rahman Mas-Harithulfadhli-Agus, Idris Norazlin, Binti Samsudin Suhailah, Siti Nor Sakinah Saudi, Nurul Munirah Abdullah, Noramira Nozmi, Abdul Wahab Zainuddin, and Daud Aziah
- Subjects
Leptospirosis ,Knowledge ,Attitude ,Belief ,Practice ,Questionnaires ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background In Malaysia, leptospirosis is considered an endemic disease, with sporadic outbreaks following rainy or flood seasons. The objective of this study was to develop and validate a new knowledge, attitude, belief and practice (KABP) questionnaire on leptospirosis for use in urban and rural populations in Malaysia. Methods The questionnaire comprised development and validation stages. The development phase encompassed a literature review, expert panel review, focus-group testing, and evaluation. The validation phase consisted of exploratory and confirmatory parts to verify the psychometric properties of the questionnaire. A total of 214 and 759 participants were recruited from two Malaysian states, Kelantan and Selangor respectively, for the validation phase. The participants comprised urban and rural communities with a high reported incidence of leptospirosis. The knowledge section of the validation phase utilized item response theory (IRT) analysis. The attitude and belief sections utilized exploratory factor analysis (EFA) and confirmatory factor analysis (CFA). Results The development phase resulted in a questionnaire that included four main sections: knowledge, attitude, belief, and practice. In the exploratory phase, as shown by the IRT analysis of knowledge about leptospirosis, the difficulty and discrimination values of the items were acceptable, with the exception of two items. Based on the EFA, the psychometric properties of the attitude, belief, and practice sections were poor. Thus, these sections were revised, and no further factor analysis of the practice section was conducted. In the confirmatory stage, the difficulty and discrimination values of the items in the knowledge section remained within the acceptable range. The CFA of the attitude section resulted in a good-fitting two-factor model. The CFA of the belief section retained low number of items, although the analysis resulted in a good fit in the final three-factor model. Conclusions Based on the IRT analysis and factor analytic evidence, the knowledge and attitude sections of the KABP questionnaire on leptospirosis were psychometrically valid. However, the psychometric properties of the belief section were unsatisfactory, despite being revised after the initial validation study. Further development of this section is warranted in future studies.
- Published
- 2018
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34. Integrating Design and Planning in Informal Settlements
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Manoj Parmar and Binti Singh
- Subjects
Informality ,Slums ,Mumbai ,Planning ,Design ,Resilience ,Architecture ,NA1-9428 ,City planning ,HT165.5-169.9 - Abstract
Informal settlements are often not included in the development plan of cities. Urban planning has increasingly been less concerned about provision of basic infrastructure and services to vulnerable communities living and working in informal conditions. Increasing official apathy pose major challenges to achieving the globally accepted goal of inclusive urbanization as envisaged in Sustainable Development Goals / SDGs.. Goal 11 that aims at creating Safe, resilient, inclusive and sustainable cities will remain distant until we factor in the informal living and working conditions into our current urban planning narrative. GazdharBandh is a Notified Slum by Slum Redevelopment Authority (SRA) of MMRDA (Maharashtra Metropolitan Region Development Authority). The slum pocket is located in western suburb of Santacruz west, Mumbai. Gazdhar Bandh shows high density informal housing within the “no development zone” as per the development plan 2034, in estuary conditions that is vulnerable to recurrent floods. Slum upgradation faces multiple challenges with the complex interplay of local diversities, relocation and livelihood concerns. Using the case study of Gazdar Bandh slum, we examine how community responses to housing and other design strategies like public spaces, streetscapes, and makeshift spaces as immediate responses can go a long way to build long term resilience and factored into the broader city level planning narrative. The findings broadly examine the question: How can urban planning and design embrace uncertainty and concludes with an operational framework drawing on participatory planning and good urban place engaging multiple stakeholders.
- Published
- 2019
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35. A PANACEA FOR TEACHING LISTENING AT ISLAMIC REALM: INTERACTIVE VIDEO VIEWING TECHNIQUE
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Hesty Puspitasari and Binti Suaidah Hanur
- Subjects
interactive video ,listening skill ,language exposure ,Education (General) ,L7-991 ,English language ,PE1-3729 - Abstract
This study is designed to solve the classroom problem dealing with the improvement of listening skill of the students of one private Islamic college that also study at pesantren in which they have lack of exposure in learning English. To cater a new way to overcome this issue, a classroom action research focusing on the implementation of interactive video viewing technique was employed. The findings exemplify that the students show better listening achievement after the implementation of second research cycle.
- Published
- 2016
36. NORMALISASI DAN PEMBOBOTAN UNTUK KLONING MULUS PADA PENCAMPURAN CITRA MENGGUNAKAN METODE POISSON
- Author
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Ratna Shofiati, Binti Solihah, and Sari Irmadani
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Information technology ,T58.5-58.64 - Abstract
Pada penelitian ini diterapkan normalisasi dan pembobotan pada teknik pencampuran dengan metode Poisson sehingga dapat diperoleh citra hasil pencampuran. Dengan teknik ini, daerah batas antara dua citra yang dicampur dapat menyatu dengan sempurna tanpa harus melakukan penyuntingan gambar secara manual. Citra asal yang akan dicampur ke dalam citra target disegmentasi terlebih dahulu menggunakan metode ambang batas untuk membuat topeng. Metode Poisson diterapkan pada citra masukan dan target untuk mendapatkan nilai yang setelah dinormalisasi ke dalam [0 1] akan menjadi bobot dalam perhitungan nilai piksel baru pada daerah perbatasan antara citra asal dan target. Percobaan yang dilakukan pada sejumlah citra menunjukkan bahwa penggunaan bobot ternormalisasi hasil perhitungan Poisson memberikan efek keabuan yang makin meningkat mendekati batas luar citra asal. Hal ini menunjukkan bahwa prosentase nilai piksel pada batas terluar citra asal lebih besar dibandingkan dengan daerah batas bagian dalam. Perhitungan Kloning Mulus yang dilakukan dengan pembobotan tersebut menghasilkan gambar asal yang menyatu secara sempurna dengan citra target.
- Published
- 2013
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37. Geographical Information System (GIS) as an Innovative Adoption to Ease Customers in Locating SME Business Premises in Malacca
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Arshad Yusri bin, bin Mohd Sani Muhammad Syahir, and binti Syed Ibrahim Sharifah Norhafiza
- Subjects
Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Geographical Information System (GIS) is one of the recent innovation to ease users in locating places. GIS is a system designed to capture, store, manipulate, analyze, manage, and present all types of spatial or geographical data. It can also be used by customers in locating business premises. Research related to application of GIS in locating SME business premises especially in Malacca as a tourist state is still very limited. This study used a survey method to produce more generalizable findings. Quantitative procedures for data collection and analysis were rigorously applied to ensure reliability and validity of the findings. A total of 160 usable responses was collected from 400 distributed questionnaires. This study found all variables significant and therefore, all hypotheses were accepted. In the future, researchers may extend this study to other areas to understand more about current usage patterns and reasons for its adoption. Studies which cover non-Malaysian respondents and different education levels can further document different perspectives of GIS adoption.
- Published
- 2018
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38. Thermoluminescence Properties of Aluminium Oxide doped Strontium, Lithium and Germanium prepared by Combustion Synthesis method
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Binti Saharin Nurnl Syazlin, Ahmad N.E, Tajuddin H.A, and Tamuri Abdul Rahman
- Subjects
Combustion synthesis ,Aluminium oxide ,Thermoluminescent dosimeter ,Physics ,QC1-999 - Abstract
In this work, Al2O3 doped with Sr, Li and Ge was prepared by combustion synthesis techniques for thermoluminescent (TL) ionizing radiation dosimetry applications. Dopants sample concentration were varied from 0.1 mol% to 5 mol% in order to study the effect of the concentration on the TL response. The optimum concentration was found to be 0.3 mol% for Sr and Li and 3.0 mol% for Ge. Based from the comparison of this doped material, the highest sensitivity was found for Ge doped and linear response for doses studied range of 10-80 Gy. X-Ray diffraction (XRD) patterns of the samples were recorded to confirm the formation of the sample. The sharp peaks present in the XRD confirms the sample is crystalline. The TL response of these samples for Co -60 gamma radiation were evaluated. It was observed a TL glow peak around 175̊C for doped sample which is suitable for radiation dosimetry.
- Published
- 2017
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39. Acute leukaemia masquerading as acute abdomen
- Author
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Wahid, Fadilah binti S Abdul, Keng, Cheong Soon, and Ali, Raymond bin Azman
- Abstract
This article reports three patients with acute leukaemia who presented with acute abdomen as the first manifestation of the disease. Leukaemic infiltrates of the bowel and appendix may have caused the abdominal symptoms in these patients. Acute leukaemia should be included in the differential diagnosis of severe abdominal pain associated with an abnormal blood count. This report highlights the importance of early diagnosis of acute leukaemia as initiation of cytotoxic chemotherapy results in prompt resolution of the abdominal catastrophe and obviates the need for surgery.
- Published
- 2002
- Full Text
- View/download PDF
40. Loss of the Na+/K+ cation pump CATP-1 suppresses nekl-associated molting defects.
- Author
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Binti S, Edeen PT, and Fay DS
- Abstract
The conserved Caenorhabditis elegans protein kinases NEKL-2 and NEKL-3 regulate membrane trafficking and are required for larval molting. Through a forward genetic screen we identified a mutation in catp-1 as a suppressor of molting defects in synthetically lethal nekl-2; nekl-3 double mutants. catp-1 encodes a membrane-associated P4-type ATPase involved in Na+-K+ exchange. A previous study found that wild-type worms exposed to the nicotinic agonist dimethylphenylpiperazinium (DMPP) exhibited larval arrest and molting-associated defects, which were suppressed by inhibition of catp-1. By testing a spectrum catp-1 alleles, we found that resistance to DMPP toxicity and the suppression of nekl defects did not strongly correlate, suggesting key differences in the mechanism of catp-1-mediated suppression. Through whole genome sequencing of additional nekl-2; nekl-3 suppressor strains, we identified two additional coding-altering mutations in catp-1. However, neither mutation, when introduced into nekl-2; nekl-3 mutants using CRISPR, was sufficient to elicit robust suppression of molting defects, suggesting the involvement of other loci. Endogenously tagged CATP-1 was primarily expressed in epidermal cells within punctate structures located near the apical plasma membrane, consistent with a role in regulating cellular processes within the epidermis. Based on previous studies, we tested the hypothesis that catp-1 inhibition induces entry into the pre-dauer L2d stage, potentially accounting for the ability of catp-1 mutants to suppress nekl molting defects. However, we found no evidence that loss of catp-1 leads to entry into L2d. As such, loss of catp-1 may suppress nekl-associated and DMPP-induced defects by altering electrochemical gradients within membrane-bound compartments., (© The Author(s) 2024. Published by Oxford University Press on behalf of The Genetics Society of America.)
- Published
- 2024
- Full Text
- View/download PDF
41. A conserved protein tyrosine phosphatase, PTPN-22, functions in diverse developmental processes in C. elegans.
- Author
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Binti S, Linder AG, Edeen PT, and Fay DS
- Subjects
- Animals, Humans, Molting genetics, Cell Adhesion genetics, NIMA-Related Kinases genetics, NIMA-Related Kinases metabolism, Protein Tyrosine Phosphatases, Non-Receptor genetics, Protein Tyrosine Phosphatases, Non-Receptor metabolism, Protein Tyrosine Phosphatases metabolism, Protein Tyrosine Phosphatases genetics, Guanine Nucleotide Exchange Factors metabolism, Guanine Nucleotide Exchange Factors genetics, Gene Expression Regulation, Developmental, Cytoskeleton metabolism, Cytoskeleton genetics, Loss of Function Mutation, Caenorhabditis elegans genetics, Caenorhabditis elegans Proteins metabolism, Caenorhabditis elegans Proteins genetics
- Abstract
Protein tyrosine phosphatases non-receptor type (PTPNs) have been studied extensively in the context of the adaptive immune system; however, their roles beyond immunoregulation are less well explored. Here we identify novel functions for the conserved C. elegans phosphatase PTPN-22, establishing its role in nematode molting, cell adhesion, and cytoskeletal regulation. Through a non-biased genetic screen, we found that loss of PTPN-22 phosphatase activity suppressed molting defects caused by loss-of-function mutations in the conserved NIMA-related kinases NEKL-2 (human NEK8/NEK9) and NEKL-3 (human NEK6/NEK7), which act at the interface of membrane trafficking and actin regulation. To better understand the functions of PTPN-22, we carried out proximity labeling studies to identify candidate interactors of PTPN-22 during development. Through this approach we identified the CDC42 guanine-nucleotide exchange factor DNBP-1 (human DNMBP) as an in vivo partner of PTPN-22. Consistent with this interaction, loss of DNBP-1 also suppressed nekl-associated molting defects. Genetic analysis, co-localization studies, and proximity labeling revealed roles for PTPN-22 in several epidermal adhesion complexes, including C. elegans hemidesmosomes, suggesting that PTPN-22 plays a broad role in maintaining the structural integrity of tissues. Localization and proximity labeling also implicated PTPN-22 in functions connected to nucleocytoplasmic transport and mRNA regulation, particularly within the germline, as nearly one-third of proteins identified by PTPN-22 proximity labeling are known P granule components. Collectively, these studies highlight the utility of combined genetic and proteomic approaches for identifying novel gene functions., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Binti et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
- Full Text
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42. Loss of the Na + /K + cation pump CATP-1 suppresses nekl -associated molting defects.
- Author
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Binti S, Edeen PT, and Fay DS
- Abstract
The conserved C. elegans protein kinases NEKL-2 and NEKL-3 regulate multiple steps of membrane trafficking and are required for larval molting. Through a forward genetic screen we identified a loss-of-function mutation in catp-1 as a suppressor of molting defects in synthetically lethal nekl-2; nekl-3 double mutants. catp-1 is predicted to encode a membrane- associated P4-type ATPase involved in Na
+ -K+ exchange. Moreover, a mutation predicted to abolish CATP-1 ion-pump activity also suppressed nekl-2; nekl-3 mutants. Endogenously tagged CATP-1 was primarily expressed in epidermal (hypodermal) cells within punctate structures located at or near the apical plasma membrane. Through whole genome sequencing, we identified two additional nekl-2; nekl-3 suppressor strains containing coding-altering mutations in catp-1 but found that neither mutation, when introduced into nekl-2; nekl-3 mutants using CRISPR methods, was sufficient to elicit robust suppression of molting defects. Our data also suggested that the two catp-1 isoforms, catp-1a and catp-1b , may in some contexts be functionally redundant. On the basis of previously published studies, we tested the hypothesis that loss of catp-1 may suppress nekl -associated defects by inducing partial entry into the dauer pathway. Contrary to expectations, however, we failed to obtain evidence that loss of catp-1 suppresses nekl-2; nekl-3 defects through a dauer-associated mechanism or that loss of catp-1 leads to entry into the pre-dauer L2d stage. As such, loss of catp-1 may suppress nekl- associated molting and membrane trafficking defects by altering electrochemical gradients within membrane-bound compartments.- Published
- 2024
- Full Text
- View/download PDF
43. Conserved NIMA kinases regulate multiple steps of endocytic trafficking.
- Author
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Joseph BB, Naslavsky N, Binti S, Conquest S, Robison L, Bai G, Homer RO, Grant BD, Caplan S, and Fay DS
- Subjects
- Animals, Humans, Endocytosis genetics, Endosomes genetics, Endosomes metabolism, NIMA-Related Kinases genetics, NIMA-Related Kinases metabolism, Clathrin genetics, Clathrin metabolism, Bone Morphogenetic Protein Receptors metabolism, Protein Transport genetics, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins genetics, Caenorhabditis elegans Proteins metabolism
- Abstract
Human NIMA-related kinases have primarily been studied for their roles in cell cycle progression (NEK1/2/6/7/9), checkpoint-DNA-damage control (NEK1/2/4/5/10/11), and ciliogenesis (NEK1/4/8). We previously showed that Caenorhabditis elegans NEKL-2 (NEK8/9 homolog) and NEKL-3 (NEK6/7 homolog) regulate apical clathrin-mediated endocytosis (CME) in the worm epidermis and are essential for molting. Here we show that NEKL-2 and NEKL-3 also have distinct roles in controlling endosome function and morphology. Specifically, loss of NEKL-2 led to enlarged early endosomes with long tubular extensions but showed minimal effects on other compartments. In contrast, NEKL-3 depletion caused pronounced defects in early, late, and recycling endosomes. Consistently, NEKL-2 was strongly localized to early endosomes, whereas NEKL-3 was localized to multiple endosomal compartments. Loss of NEKLs also led to variable defects in the recycling of two resident cargoes of the trans-Golgi network (TGN), MIG-14/Wntless and TGN-38/TGN38, which were missorted to lysosomes after NEKL depletion. In addition, defects were observed in the uptake of clathrin-dependent (SMA-6/Type I BMP receptor) and independent cargoes (DAF-4/Type II BMP receptor) from the basolateral surface of epidermal cells after NEKL-2 or NEKL-3 depletion. Complementary studies in human cell lines further showed that siRNA knockdown of the NEKL-3 orthologs NEK6 and NEK7 led to missorting of the mannose 6-phosphate receptor from endosomes. Moreover, in multiple human cell types, depletion of NEK6 or NEK7 disrupted both early and recycling endosomal compartments, including the presence of excess tubulation within recycling endosomes, a defect also observed after NEKL-3 depletion in worms. Thus, NIMA family kinases carry out multiple functions during endocytosis in both worms and humans, consistent with our previous observation that human NEKL-3 orthologs can rescue molting and trafficking defects in C. elegans nekl-3 mutants. Our findings suggest that trafficking defects could underlie some of the proposed roles for NEK kinases in human disease., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Joseph et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
- Full Text
- View/download PDF
44. An unexpected role for the conserved ADAM-family metalloprotease ADM-2 in Caenorhabditis elegans molting.
- Author
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Joseph BB, Edeen PT, Meadows S, Binti S, and Fay DS
- Subjects
- Animals, Endocytosis genetics, Mammals metabolism, Metalloproteases genetics, Metalloproteases metabolism, Molting genetics, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins metabolism
- Abstract
Molting is a widespread developmental process in which the external extracellular matrix (ECM), the cuticle, is remodeled to allow for organismal growth and environmental adaptation. Studies in the nematode Caenorhabditis elegans have identified a diverse set of molting-associated factors including signaling molecules, intracellular trafficking regulators, ECM components, and ECM-modifying enzymes such as matrix metalloproteases. C. elegans NEKL-2 and NEKL-3, two conserved members of the NEK family of protein kinases, are essential for molting and promote the endocytosis of environmental steroid-hormone precursors by the epidermis. Steroids in turn drive the cyclic induction of many genes required for molting. Here we report a role for the sole C. elegans ADAM-meltrin metalloprotease family member, ADM-2, as a mediator of molting. Loss of adm-2, including mutations that disrupt the metalloprotease domain, led to the strong suppression of molting defects in partial loss-of-function nekl mutants. ADM-2 is expressed in the epidermis, and its trafficking through the endo-lysosomal network was disrupted after NEKL depletion. We identified the epidermally expressed low-density lipoprotein receptor-related protein, LRP-1, as a candidate target of ADM-2 regulation. Whereas loss of ADM-2 activity led to the upregulation of apical epidermal LRP-1, ADM-2 overexpression caused a reduction in LRP-1 levels. Consistent with this, several mammalian ADAMs, including the meltrin ADAM12, have been shown to regulate mammalian LRP1 via proteolysis. In contrast to mammalian homologs, however, the regulation of LRP-1 by ADM-2 does not appear to involve the metalloprotease function of ADM-2, nor is proteolytic processing of LRP-1 strongly affected in adm-2 mutants. Our findings suggest a noncanonical role for an ADAM family member in the regulation of a lipoprotein-like receptor and lead us to propose that endocytic trafficking may be important for both the internalization of factors that promote molting as well as the removal of proteins that can inhibit the process., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
- Full Text
- View/download PDF
45. A life cycle alteration can correct molting defects in Caenorhabditis elegans.
- Author
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Binti S, Melinda RV, Joseph BB, Edeen PT, Miller SD, and Fay DS
- Subjects
- Alleles, Animals, Animals, Genetically Modified, CRISPR-Cas Systems, Caenorhabditis elegans Proteins genetics, Caenorhabditis elegans Proteins metabolism, Endocytosis genetics, Epidermis metabolism, Forkhead Transcription Factors genetics, Forkhead Transcription Factors metabolism, Larva genetics, Larva metabolism, Loss of Function Mutation, Signal Transduction genetics, Starvation, Sterols metabolism, Up-Regulation genetics, Caenorhabditis elegans genetics, Caenorhabditis elegans metabolism, Gene Expression Regulation, Developmental, Life Cycle Stages genetics, Molting genetics, NIMA-Related Kinases genetics, NIMA-Related Kinases metabolism
- Abstract
Molting is a widespread feature in the development of many invertebrates, including nematodes and arthropods. In Caenorhabditis elegans, the highly conserved protein kinases NEKL-2/NEK8/9 and NEKL-3/NEK6/7 (NEKLs) promote molting through their involvement in the uptake and intracellular trafficking of epidermal cargos. We found that the relative requirements for NEKL-2 and NEKL-3 differed at different life-cycle stages and under different environmental conditions. Most notably, the transition from the second to the third larval stage (L2→L3 molt) required a higher level of NEKL function than during several other life stages or when animals had experienced starvation at the L1 stage. Specifically, larvae that entered the pre-dauer L2d stage could escape molting defects when transiting to the (non-dauer) L3 stage. Consistent with this, mutations that promote entry into L2d suppressed nekl-associated molting defects, whereas mutations that inhibit L2d entry reduced starvation-mediated suppression. We further showed that loss or reduction of NEKL functions led to defects in the transcription of cyclically expressed molting genes, many of which are under the control of systemic steroid hormone regulation. Moreover, the timing and severity of these transcriptional defects correlated closely with the strength of nekl alleles and with their stage of arrest. Interestingly, transit through L2d rescued nekl-associated expression defects in suppressed worms, providing an example of how life-cycle decisions can impact subsequent developmental events. Given that NEKLs are implicated in the uptake of sterols by the epidermis, we propose that loss of NEKLs leads to a physiological reduction in steroid-hormone signaling and consequent defects in the transcription of genes required for molting., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
46. Acute leukaemia masquerading as acute abdomen.
- Author
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Abdul Wahid Fb, Keng CS, and Ali Rb
- Subjects
- Acute Disease, Adolescent, Adult, Diagnosis, Differential, Fatal Outcome, Female, Humans, Leukemia, Myeloid diagnosis, Precursor Cell Lymphoblastic Leukemia-Lymphoma diagnosis, Abdomen, Acute etiology, Leukemia, Myeloid complications, Precursor Cell Lymphoblastic Leukemia-Lymphoma complications
- Published
- 2002
- Full Text
- View/download PDF
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