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11 results on '"Bernabé, César H."'

4. Building Expertise on FAIR Through Evolving Bring Your Own Data (BYOD) Workshops: Describing the Data, Software, and Management-focused Approaches and Their Evolution

Author

CMM, CMM Groep Cuppen, Bernabé, César H., Thielemans, Lieze, Kaliyaperumal, Rajaram, Carta, Claudio, Zhang, Shuxin, van Gelder, Celia W.G., Benis, Nirupama, Santos, Luiz Olavo Bonino da Silva, Cornet, Ronald, Vieira, Bruna Dos Santos, Lalout, Nawel, Henriques, Ines, Ballesteros, Alberto Cámara, Burger, Kees, Kersloot, Martijn G., Ehrhart, Friederike, Enckevort, Esther van, Evelo, Chris T., Gray, Alasdair J.G., Hanauer, Marc, Hettne, Kristina, Ligt, Joep de, Pereira, Arnaldo, Queralt-Rosinach, Núria, Schultes, Erik, Taruscio, Domenica, Waagmeester, Andra, Wilkinson, Mark D., Willighagen, Egon L., Jansen, Mascha, Mons, Barend, Roos, Marco, Jacobsen, Annika, CMM, CMM Groep Cuppen, Bernabé, César H., Thielemans, Lieze, Kaliyaperumal, Rajaram, Carta, Claudio, Zhang, Shuxin, van Gelder, Celia W.G., Benis, Nirupama, Santos, Luiz Olavo Bonino da Silva, Cornet, Ronald, Vieira, Bruna Dos Santos, Lalout, Nawel, Henriques, Ines, Ballesteros, Alberto Cámara, Burger, Kees, Kersloot, Martijn G., Ehrhart, Friederike, Enckevort, Esther van, Evelo, Chris T., Gray, Alasdair J.G., Hanauer, Marc, Hettne, Kristina, Ligt, Joep de, Pereira, Arnaldo, Queralt-Rosinach, Núria, Schultes, Erik, Taruscio, Domenica, Waagmeester, Andra, Wilkinson, Mark D., Willighagen, Egon L., Jansen, Mascha, Mons, Barend, Roos, Marco, and Jacobsen, Annika

Published
2024

5. Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and management- focused approaches and their evolution

Author

Bernabé, César H., primary, Thielemans, Lieze, additional, Kaliyaperumal, Rajaram, additional, Carta, Claudio, additional, Zhang, Shuxin, additional, van Gelder, Celia W.G., additional, Benis, Nirupama, additional, da Silva Santos, Luiz Olavo Bonino, additional, Cornet, Ronald, additional, Vieira, Bruna dos Santos, additional, Lalout, Nawel, additional, Henriques, Ines, additional, Ballesteros, Alberto Cámara, additional, Burger, Kees, additional, Kersloot, Martijn G., additional, Ehrhart, Friederike, additional, van Enckevort, Esther, additional, Evelo, Chris T., additional, Gray, Alasdair J. G., additional, Hanauer, Marc, additional, Hettne, Kristina, additional, de Ligt, Joep, additional, Pereira, Arnaldo, additional, Queralt-Rosinach, Núria, additional, Schultes, Erik, additional, Taruscio, Domenica, additional, Waagmeester, Andra, additional, Wilkinson, Mark D., additional, Willighagen, Egon L., additional, Jansen, Mascha, additional, Mons, Barend, additional, Roos, Marco, additional, and Jacobsen, Annika, additional

Published
2023
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6. A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR

Author

van Damme, Philip, primary, Moreno, Pablo Alarcón, additional, Bernabé, César H., additional, Ballesteros, Alberto Cámara, additional, Le Cornec, Clémence M. A., additional, Dos Santos Vieira, Bruna, additional, van der Velde, K. Joeri, additional, Zhang, Shuxin, additional, Carta, Claudio, additional, Cornet, Ronald, additional, ’t Hoen, Peter A.C., additional, Jacobsen, Annika, additional, Swertz, Morris A., additional, Roos, Marco, additional, and Benis, Nirupama, additional

Published
2023
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8. Towards FAIRification of Sensitive and Fragmented Rare Disease Patient Data: Challenges and Solutions in European Reference Network Registries

Author

Vieira, Bruna dos Santos, primary, Bernabé, César H., additional, Zhang, Shuxin, additional, Abaza, Haitham, additional, Benis, Nirupama, additional, Cámara, Alberto, additional, Cornet, Ronald, additional, Cornec, Clémence M. A. Le, additional, Hoen, Peter A.C. ’t, additional, Schaefer, Franz, additional, Velde, K. Joeri van der, additional, Swertz, Morris A., additional, Wilkinson, Mark D., additional, Jacobsen, Annika, additional, and Roos, Marco, additional

Published
2022
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11. The COVID-19 epidemiology and monitoring ontology

Author

Queralt-Rosinach, Núria, Schofield, Paul N., Hoehndorf, Robert, Weiland, Claus, Schultes, Erik, Bernabé, César H., and Roos, Marco

Subjects
OBO, COVID-19, epidemiology, ontology, 3. Good health, OWL
Abstract

One year ago, the novel COVID-19 infectious disease emerged and spread, causing high mortality and morbidity rates worldwide. In the OBO Foundry, there are more than one hundred ontologies to share and analyse large-scale datasets for biological and biomedical sciences. However, this pandemic revealed that we lack tools for an efficient and timely exchange of this epidemiological data which is necessary to assess the impact of disease outbreaks, the efficacy of mitigating interventions and to provide a rapid response. Recently, several new COVID-19 ontologies have developed such as the IDO extension or CIDO. Hence, our research question was to determine if there was a good representation of epidemiological quantitative concepts in OBO ontologies. Our objectives were to identify missing COVID-19 epidemiological terms and implement axiom patterns for extensions to existing ontologies or to build a new, logically well-formed, and accurate ontology in OBO. In this study we present our findings and contributions for the bio-ontologies community.

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